AutoCloner

Multiple sequence alignment - TraesCS3D01G269400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G269400	chr3D	100.000	4018	0	0	1	4018	374058054	374062071	0.000000e+00	7420.0
1	TraesCS3D01G269400	chr3D	89.806	618	61	2	1	617	587508773	587508157	0.000000e+00	791.0
2	TraesCS3D01G269400	chr3A	94.819	3590	130	21	1	3560	496511566	496515129	0.000000e+00	5548.0
3	TraesCS3D01G269400	chr3A	90.115	607	57	3	1	605	46874417	46873812	0.000000e+00	785.0
4	TraesCS3D01G269400	chr3B	95.479	2986	67	27	616	3573	487855039	487857984	0.000000e+00	4704.0
5	TraesCS3D01G269400	chr3B	91.885	419	28	4	3605	4018	487872118	487872535	7.490000e-162	580.0
6	TraesCS3D01G269400	chr3B	94.094	254	14	1	3277	3530	487871837	487872089	6.300000e-103	385.0
7	TraesCS3D01G269400	chr4D	91.248	617	53	1	1	616	425281649	425281033	0.000000e+00	839.0
8	TraesCS3D01G269400	chr5D	90.438	617	57	2	1	616	389442529	389441914	0.000000e+00	811.0
9	TraesCS3D01G269400	chr1D	90.391	614	54	5	1	611	22188440	22189051	0.000000e+00	802.0
10	TraesCS3D01G269400	chr1D	89.806	618	61	2	1	617	198903024	198902408	0.000000e+00	791.0
11	TraesCS3D01G269400	chr1D	89.644	618	62	2	1	617	88381462	88382078	0.000000e+00	785.0
12	TraesCS3D01G269400	chr1D	75.196	895	182	28	1993	2858	465147454	465146571	1.750000e-103	387.0
13	TraesCS3D01G269400	chr1B	89.806	618	61	2	1	617	350635134	350635750	0.000000e+00	791.0
14	TraesCS3D01G269400	chr1B	74.385	894	191	30	1993	2858	642065397	642064514	8.260000e-92	348.0
15	TraesCS3D01G269400	chr1A	74.805	897	182	32	1993	2858	557552082	557551199	8.210000e-97	364.0
16	TraesCS3D01G269400	chr1A	78.035	346	63	9	2513	2850	557541746	557541406	5.260000e-49	206.0
17	TraesCS3D01G269400	chr4A	86.567	67	8	1	3804	3869	693446315	693446381	5.570000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G269400	chr3D	374058054	374062071	4017	False	7420.0	7420	100.0000	1	4018	1	chr3D.!!$F1	4017
1	TraesCS3D01G269400	chr3D	587508157	587508773	616	True	791.0	791	89.8060	1	617	1	chr3D.!!$R1	616
2	TraesCS3D01G269400	chr3A	496511566	496515129	3563	False	5548.0	5548	94.8190	1	3560	1	chr3A.!!$F1	3559
3	TraesCS3D01G269400	chr3A	46873812	46874417	605	True	785.0	785	90.1150	1	605	1	chr3A.!!$R1	604
4	TraesCS3D01G269400	chr3B	487855039	487857984	2945	False	4704.0	4704	95.4790	616	3573	1	chr3B.!!$F1	2957
5	TraesCS3D01G269400	chr3B	487871837	487872535	698	False	482.5	580	92.9895	3277	4018	2	chr3B.!!$F2	741
6	TraesCS3D01G269400	chr4D	425281033	425281649	616	True	839.0	839	91.2480	1	616	1	chr4D.!!$R1	615
7	TraesCS3D01G269400	chr5D	389441914	389442529	615	True	811.0	811	90.4380	1	616	1	chr5D.!!$R1	615
8	TraesCS3D01G269400	chr1D	22188440	22189051	611	False	802.0	802	90.3910	1	611	1	chr1D.!!$F1	610
9	TraesCS3D01G269400	chr1D	198902408	198903024	616	True	791.0	791	89.8060	1	617	1	chr1D.!!$R1	616
10	TraesCS3D01G269400	chr1D	88381462	88382078	616	False	785.0	785	89.6440	1	617	1	chr1D.!!$F2	616
11	TraesCS3D01G269400	chr1D	465146571	465147454	883	True	387.0	387	75.1960	1993	2858	1	chr1D.!!$R2	865
12	TraesCS3D01G269400	chr1B	350635134	350635750	616	False	791.0	791	89.8060	1	617	1	chr1B.!!$F1	616
13	TraesCS3D01G269400	chr1B	642064514	642065397	883	True	348.0	348	74.3850	1993	2858	1	chr1B.!!$R1	865
14	TraesCS3D01G269400	chr1A	557551199	557552082	883	True	364.0	364	74.8050	1993	2858	1	chr1A.!!$R2	865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
458	460	1.001406	CCCGGACTATGAGCATCCTTC	59.999	57.143	0.73	0.0	0.00	3.46	F
1480	1485	0.097674	GATTTGCTTCTCGCGTGCAT	59.902	50.000	5.77	0.0	43.27	3.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2043	2048	0.038526	TCGTTGGCGAAGAGGAAGAC	60.039	55.000	0.00	0.0	44.92	3.01	R
3112	3138	2.654863	CTACGCCCCATGGAAATCTTT	58.345	47.619	15.22	0.0	0.00	2.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	1.005097	TGGAGTGGCTTCATCTTGCAT	59.995	47.619	0.00	0.00	0.00	3.96
84	85	3.116531	GCCGACAGGTGTTACGCC	61.117	66.667	6.88	6.88	40.50	5.68
136	137	5.674008	CACGACAGATCTTTCAAAGACTTG	58.326	41.667	0.68	6.58	41.01	3.16
165	166	2.345991	GCTGGTGGTACTTGGCGA	59.654	61.111	0.00	0.00	0.00	5.54
170	172	1.644786	GGTGGTACTTGGCGACATGC	61.645	60.000	3.64	0.00	42.32	4.06
234	236	3.390521	CGCAGGGAGGTGGTGCTA	61.391	66.667	0.00	0.00	34.92	3.49
299	301	2.365582	TGATGCGTCAGTACAGCTCTA	58.634	47.619	3.97	0.00	0.00	2.43
372	374	3.633116	GTGTGCCCCGTACCTGGT	61.633	66.667	4.05	4.05	0.00	4.00
448	450	2.028385	GTGGTATTAGGCCCGGACTATG	60.028	54.545	0.73	0.00	0.00	2.23
458	460	1.001406	CCCGGACTATGAGCATCCTTC	59.999	57.143	0.73	0.00	0.00	3.46
517	519	1.270839	TGGTGGCTTCAGACTTACTGC	60.271	52.381	0.00	0.00	45.38	4.40
570	573	3.196039	TCAATAAAGTGGCTGCATGCATT	59.804	39.130	22.97	13.89	45.15	3.56
590	593	3.473647	CCAGATGCAGAGGCCGGA	61.474	66.667	5.05	0.00	40.13	5.14
942	947	2.431771	TCGCGACGACACAATGGG	60.432	61.111	3.71	0.00	0.00	4.00
990	995	5.414789	TTCCATTCTCCACAAGATCGTAA	57.585	39.130	0.00	0.00	32.82	3.18
1020	1025	1.493861	TGAGGGGCATCTTCTCTCTG	58.506	55.000	0.00	0.00	0.00	3.35
1480	1485	0.097674	GATTTGCTTCTCGCGTGCAT	59.902	50.000	5.77	0.00	43.27	3.96
1515	1520	1.009829	CGTGCCTGCAGATCTTAACC	58.990	55.000	17.39	0.00	0.00	2.85
1730	1735	3.804325	TCGTGCTTCATGATTTAGCTAGC	59.196	43.478	16.69	6.62	35.93	3.42
1830	1835	8.073467	TCAAGAAGGAATTTACAACTGGTTTT	57.927	30.769	0.00	0.00	0.00	2.43
1988	1993	1.329292	CCGCTTCTTCAACAAACGACA	59.671	47.619	0.00	0.00	0.00	4.35
2073	2078	2.885644	CCAACGACCGCTCCATCG	60.886	66.667	0.00	0.00	43.97	3.84
2177	2182	2.790791	CGCTCTGCTTCCCCTCGAT	61.791	63.158	0.00	0.00	0.00	3.59
2216	2236	1.299468	GAGCGCGGAGGTGATAGTG	60.299	63.158	8.83	0.00	0.00	2.74
2846	2869	1.016130	CACACGGCTTCTCGCAGAAT	61.016	55.000	0.00	0.00	41.67	2.40
3403	3455	4.065088	TGGTGTCACTAGCATTCAAGTTC	58.935	43.478	2.35	0.00	0.00	3.01
3546	3599	6.039382	ACATTAGTCGGAATGGATTTTTAGGC	59.961	38.462	9.43	0.00	40.50	3.93
3560	3613	6.476706	GGATTTTTAGGCCTTCGATTTGATTG	59.523	38.462	12.58	0.00	0.00	2.67
3568	3621	4.987912	GCCTTCGATTTGATTGGTGAAAAA	59.012	37.500	0.00	0.00	0.00	1.94
3569	3622	5.639082	GCCTTCGATTTGATTGGTGAAAAAT	59.361	36.000	0.00	0.00	0.00	1.82
3571	3624	6.646240	CCTTCGATTTGATTGGTGAAAAATGT	59.354	34.615	0.00	0.00	0.00	2.71
3572	3625	7.359431	CCTTCGATTTGATTGGTGAAAAATGTG	60.359	37.037	0.00	0.00	0.00	3.21
3573	3626	5.404968	TCGATTTGATTGGTGAAAAATGTGC	59.595	36.000	0.00	0.00	0.00	4.57
3574	3627	5.389725	CGATTTGATTGGTGAAAAATGTGCC	60.390	40.000	0.00	0.00	0.00	5.01
3575	3628	3.023946	TGATTGGTGAAAAATGTGCCG	57.976	42.857	0.00	0.00	0.00	5.69
3576	3629	2.363680	TGATTGGTGAAAAATGTGCCGT	59.636	40.909	0.00	0.00	0.00	5.68
3578	3631	0.249238	TGGTGAAAAATGTGCCGTGC	60.249	50.000	0.00	0.00	0.00	5.34
3579	3632	0.943835	GGTGAAAAATGTGCCGTGCC	60.944	55.000	0.00	0.00	0.00	5.01
3580	3633	1.007964	TGAAAAATGTGCCGTGCCG	60.008	52.632	0.00	0.00	0.00	5.69
3581	3634	1.007849	GAAAAATGTGCCGTGCCGT	60.008	52.632	0.00	0.00	0.00	5.68
3582	3635	0.238817	GAAAAATGTGCCGTGCCGTA	59.761	50.000	0.00	0.00	0.00	4.02
3583	3636	0.039888	AAAAATGTGCCGTGCCGTAC	60.040	50.000	0.00	0.00	0.00	3.67
3584	3637	0.887387	AAAATGTGCCGTGCCGTACT	60.887	50.000	0.00	0.00	0.00	2.73
3585	3638	0.037139	AAATGTGCCGTGCCGTACTA	60.037	50.000	0.00	0.00	0.00	1.82
3586	3639	0.177141	AATGTGCCGTGCCGTACTAT	59.823	50.000	0.00	0.00	0.00	2.12
3587	3640	1.034356	ATGTGCCGTGCCGTACTATA	58.966	50.000	0.00	0.00	0.00	1.31
3588	3641	1.034356	TGTGCCGTGCCGTACTATAT	58.966	50.000	0.00	0.00	0.00	0.86
3589	3642	1.001048	TGTGCCGTGCCGTACTATATC	60.001	52.381	0.00	0.00	0.00	1.63
3590	3643	1.001048	GTGCCGTGCCGTACTATATCA	60.001	52.381	0.00	0.00	0.00	2.15
3591	3644	1.890489	TGCCGTGCCGTACTATATCAT	59.110	47.619	0.00	0.00	0.00	2.45
3592	3645	3.083293	TGCCGTGCCGTACTATATCATA	58.917	45.455	0.00	0.00	0.00	2.15
3593	3646	3.506844	TGCCGTGCCGTACTATATCATAA	59.493	43.478	0.00	0.00	0.00	1.90
3594	3647	4.022155	TGCCGTGCCGTACTATATCATAAA	60.022	41.667	0.00	0.00	0.00	1.40
3595	3648	4.925054	GCCGTGCCGTACTATATCATAAAA	59.075	41.667	0.00	0.00	0.00	1.52
3596	3649	5.579511	GCCGTGCCGTACTATATCATAAAAT	59.420	40.000	0.00	0.00	0.00	1.82
3597	3650	6.753279	GCCGTGCCGTACTATATCATAAAATA	59.247	38.462	0.00	0.00	0.00	1.40
3598	3651	7.437267	GCCGTGCCGTACTATATCATAAAATAT	59.563	37.037	0.00	0.00	0.00	1.28
3599	3652	9.309516	CCGTGCCGTACTATATCATAAAATATT	57.690	33.333	0.00	0.00	0.00	1.28
3642	3695	8.192743	TCTTGGCATATATTTTTGTGGCATAT	57.807	30.769	0.00	0.00	44.86	1.78
3655	3708	4.583871	TGTGGCATATTGTACACATGTCA	58.416	39.130	16.28	16.28	38.76	3.58
3656	3709	4.635324	TGTGGCATATTGTACACATGTCAG	59.365	41.667	19.29	0.00	38.76	3.51
3658	3711	4.635324	TGGCATATTGTACACATGTCAGTG	59.365	41.667	16.28	0.00	44.93	3.66
3663	3716	5.862924	ATTGTACACATGTCAGTGCTTAC	57.137	39.130	0.00	0.00	43.23	2.34
3689	3742	4.041567	TGATGACCTAAGTTTCTCTGCCAA	59.958	41.667	0.00	0.00	0.00	4.52
3738	3791	4.452114	GCATTTCCAACATTCCTTTTGTCC	59.548	41.667	0.00	0.00	0.00	4.02
3743	3796	6.306643	TCCAACATTCCTTTTGTCCTTTTT	57.693	33.333	0.00	0.00	0.00	1.94
3771	3824	8.201554	TCTTTATCGATGGAATGCTTATATGC	57.798	34.615	8.54	3.70	0.00	3.14
3848	3901	1.004918	AAGGAACTCCCAGCGAACG	60.005	57.895	0.00	0.00	38.49	3.95
3857	3910	2.664851	CAGCGAACGCCCTCACAA	60.665	61.111	15.44	0.00	43.17	3.33
3866	3919	0.591170	CGCCCTCACAACGTTTGATT	59.409	50.000	0.00	0.00	0.00	2.57
3873	3926	4.692625	CCTCACAACGTTTGATTGAGATCT	59.307	41.667	20.00	0.00	36.44	2.75
3882	3935	6.710744	ACGTTTGATTGAGATCTTTTGGTAGT	59.289	34.615	0.00	0.00	33.28	2.73
3937	3991	5.734720	TCCCATGCTAGTCTAAAGAAACTG	58.265	41.667	0.00	0.00	0.00	3.16
3999	4056	1.152881	GCCATCTTCCCCAGCGAAT	60.153	57.895	0.00	0.00	0.00	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	0.904865	ACATCTCCACCGAAGCTCCA	60.905	55.000	0.00	0.00	0.00	3.86
78	79	1.739929	CAGGCATGACACGGCGTAA	60.740	57.895	14.22	1.17	0.00	3.18
84	85	2.815211	CCGACCAGGCATGACACG	60.815	66.667	0.00	2.31	0.00	4.49
136	137	1.507141	CCACCAGCCGACACAACTTC	61.507	60.000	0.00	0.00	0.00	3.01
165	166	0.036010	GGTACACCTCAGCAGCATGT	60.036	55.000	0.00	0.00	39.31	3.21
170	172	0.456221	CTACCGGTACACCTCAGCAG	59.544	60.000	11.16	0.00	0.00	4.24
299	301	2.564062	CAACTGCCACCATTCCATCTTT	59.436	45.455	0.00	0.00	0.00	2.52
364	366	1.350019	ACCAAGCCACTTACCAGGTAC	59.650	52.381	0.00	0.00	0.00	3.34
372	374	0.111639	GACCCCAACCAAGCCACTTA	59.888	55.000	0.00	0.00	0.00	2.24
497	499	1.270839	GCAGTAAGTCTGAAGCCACCA	60.271	52.381	0.00	0.00	46.27	4.17
548	550	2.169330	TGCATGCAGCCACTTTATTGA	58.831	42.857	18.46	0.00	44.83	2.57
549	551	2.658373	TGCATGCAGCCACTTTATTG	57.342	45.000	18.46	0.00	44.83	1.90
570	573	4.119363	GGCCTCTGCATCTGGGCA	62.119	66.667	17.30	0.00	45.68	5.36
671	675	6.089476	TCATATGCACGTGGTAATTTGTTTG	58.911	36.000	18.88	0.00	0.00	2.93
767	772	3.575256	TCTCTTTTACGCAGGTGAACCTA	59.425	43.478	0.62	0.00	46.65	3.08
942	947	1.304464	CCCTCCCTTCCCTTTGTGC	60.304	63.158	0.00	0.00	0.00	4.57
990	995	1.673767	TGCCCCTCATTCTTCCTTCT	58.326	50.000	0.00	0.00	0.00	2.85
1480	1485	2.125552	CGCTCCCGATGAACAGCA	60.126	61.111	0.00	0.00	36.29	4.41
1515	1520	1.933041	CGACGAGCACCACGTATCG	60.933	63.158	0.00	0.00	43.97	2.92
1830	1835	1.988834	CTGCGAGCTCATGCATGCAA	61.989	55.000	26.68	8.38	45.80	4.08
1988	1993	1.971357	AGGTTGTTCTCCACGTCATCT	59.029	47.619	0.00	0.00	0.00	2.90
2043	2048	0.038526	TCGTTGGCGAAGAGGAAGAC	60.039	55.000	0.00	0.00	44.92	3.01
2073	2078	1.232621	CCGTTCTGGGGGTCGAAAAC	61.233	60.000	0.00	0.00	0.00	2.43
2234	2254	1.376553	GCCGAGCTTGAAGGCTTCT	60.377	57.895	26.26	7.61	46.83	2.85
3112	3138	2.654863	CTACGCCCCATGGAAATCTTT	58.345	47.619	15.22	0.00	0.00	2.52
3210	3262	5.789710	TTGGATCGATTAACCTTTTCGAC	57.210	39.130	0.00	0.00	43.80	4.20
3532	3585	6.154363	TCAAATCGAAGGCCTAAAAATCCATT	59.846	34.615	5.16	0.00	0.00	3.16
3534	3587	5.013547	TCAAATCGAAGGCCTAAAAATCCA	58.986	37.500	5.16	0.00	0.00	3.41
3546	3599	6.646240	ACATTTTTCACCAATCAAATCGAAGG	59.354	34.615	0.00	0.00	0.00	3.46
3560	3613	0.943835	GGCACGGCACATTTTTCACC	60.944	55.000	0.00	0.00	0.00	4.02
3595	3648	9.778993	CAAGAAAATTCATTCGACTGTGAATAT	57.221	29.630	15.97	10.59	42.52	1.28
3596	3649	8.236586	CCAAGAAAATTCATTCGACTGTGAATA	58.763	33.333	15.97	0.00	42.52	1.75
3597	3650	7.086376	CCAAGAAAATTCATTCGACTGTGAAT	58.914	34.615	11.89	11.89	44.55	2.57
3598	3651	6.437928	CCAAGAAAATTCATTCGACTGTGAA	58.562	36.000	2.44	6.15	38.57	3.18
3599	3652	5.562696	GCCAAGAAAATTCATTCGACTGTGA	60.563	40.000	2.44	0.00	34.46	3.58
3600	3653	4.618489	GCCAAGAAAATTCATTCGACTGTG	59.382	41.667	2.44	0.00	34.46	3.66
3601	3654	4.278170	TGCCAAGAAAATTCATTCGACTGT	59.722	37.500	2.44	0.00	34.46	3.55
3602	3655	4.797471	TGCCAAGAAAATTCATTCGACTG	58.203	39.130	0.00	0.00	34.46	3.51
3603	3656	5.649782	ATGCCAAGAAAATTCATTCGACT	57.350	34.783	0.00	0.00	34.46	4.18
3604	3657	9.683069	AATATATGCCAAGAAAATTCATTCGAC	57.317	29.630	0.00	0.00	34.46	4.20
3612	3665	8.676401	GCCACAAAAATATATGCCAAGAAAATT	58.324	29.630	0.00	0.00	0.00	1.82
3613	3666	7.828223	TGCCACAAAAATATATGCCAAGAAAAT	59.172	29.630	0.00	0.00	0.00	1.82
3614	3667	7.164122	TGCCACAAAAATATATGCCAAGAAAA	58.836	30.769	0.00	0.00	0.00	2.29
3642	3695	4.698575	TGTAAGCACTGACATGTGTACAA	58.301	39.130	1.15	0.00	39.89	2.41
3655	3708	6.054860	ACTTAGGTCATCAATGTAAGCACT	57.945	37.500	0.00	0.00	0.00	4.40
3656	3709	6.743575	AACTTAGGTCATCAATGTAAGCAC	57.256	37.500	0.00	0.00	0.00	4.40
3658	3711	7.550906	AGAGAAACTTAGGTCATCAATGTAAGC	59.449	37.037	0.00	0.00	0.00	3.09
3663	3716	5.065731	GGCAGAGAAACTTAGGTCATCAATG	59.934	44.000	0.00	0.00	0.00	2.82
3689	3742	3.324846	TCACTCGCATGGGAATATAAGCT	59.675	43.478	14.01	0.00	0.00	3.74
3738	3791	9.956720	AGCATTCCATCGATAAAGATTAAAAAG	57.043	29.630	0.00	0.00	0.00	2.27
3751	3804	4.080129	AGGGCATATAAGCATTCCATCGAT	60.080	41.667	1.93	0.00	35.83	3.59
3790	3843	8.210946	TGCCAGTTAGCATTTCTATACAACTAT	58.789	33.333	0.00	0.00	38.00	2.12
3796	3849	6.183360	ACGTTTGCCAGTTAGCATTTCTATAC	60.183	38.462	0.00	0.00	43.64	1.47
3848	3901	1.606668	TCAATCAAACGTTGTGAGGGC	59.393	47.619	0.00	0.00	0.00	5.19
3854	3907	6.183360	ACCAAAAGATCTCAATCAAACGTTGT	60.183	34.615	0.00	0.00	34.07	3.32
3855	3908	6.208644	ACCAAAAGATCTCAATCAAACGTTG	58.791	36.000	0.00	0.00	34.07	4.10
3857	3910	6.710744	ACTACCAAAAGATCTCAATCAAACGT	59.289	34.615	0.00	0.00	34.07	3.99
3903	3957	1.755179	AGCATGGGAATTCCTTCGTG	58.245	50.000	23.63	18.76	36.20	4.35
3904	3958	2.505819	ACTAGCATGGGAATTCCTTCGT	59.494	45.455	23.63	7.03	36.20	3.85
3905	3959	3.134458	GACTAGCATGGGAATTCCTTCG	58.866	50.000	23.63	12.81	36.20	3.79
3915	3969	4.333926	GCAGTTTCTTTAGACTAGCATGGG	59.666	45.833	0.00	0.00	0.00	4.00
3916	3970	4.333926	GGCAGTTTCTTTAGACTAGCATGG	59.666	45.833	0.00	0.00	0.00	3.66
3937	3991	3.808834	ATTTTAGCTATAGGGGGTGGC	57.191	47.619	1.04	0.00	0.00	5.01
3973	4030	1.037030	GGGGAAGATGGCATTTGCGA	61.037	55.000	0.00	0.00	43.26	5.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.