Multiple sequence alignment - TraesCS3D01G268600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G268600 chr3D 100.000 7640 0 0 1961 9600 373319137 373326776 0.000000e+00 14109.0
1 TraesCS3D01G268600 chr3D 100.000 1700 0 0 1 1700 373317177 373318876 0.000000e+00 3140.0
2 TraesCS3D01G268600 chr3D 87.556 225 26 2 6444 6667 20936251 20936028 9.560000e-65 259.0
3 TraesCS3D01G268600 chr3D 87.111 225 27 2 6444 6667 20928509 20928286 4.450000e-63 254.0
4 TraesCS3D01G268600 chr3A 93.232 6974 308 51 1961 8858 494719408 494726293 0.000000e+00 10113.0
5 TraesCS3D01G268600 chr3A 88.812 1591 159 17 2355 3939 461147611 461149188 0.000000e+00 1934.0
6 TraesCS3D01G268600 chr3A 96.979 960 20 3 746 1700 494718400 494719355 0.000000e+00 1604.0
7 TraesCS3D01G268600 chr3A 88.343 712 60 11 1 694 494717432 494718138 0.000000e+00 833.0
8 TraesCS3D01G268600 chr3A 84.268 820 79 18 6441 7243 644923118 644923904 0.000000e+00 754.0
9 TraesCS3D01G268600 chr3A 81.818 385 38 12 9156 9515 494726920 494727297 2.620000e-75 294.0
10 TraesCS3D01G268600 chr3A 92.683 205 6 2 8938 9133 494726587 494726791 4.390000e-73 287.0
11 TraesCS3D01G268600 chr3A 100.000 28 0 0 27 54 142162759 142162732 1.700000e-02 52.8
12 TraesCS3D01G268600 chr3B 91.650 3018 131 44 5910 8877 487043620 487046566 0.000000e+00 4065.0
13 TraesCS3D01G268600 chr3B 87.606 1880 209 17 2330 4189 60370432 60372307 0.000000e+00 2159.0
14 TraesCS3D01G268600 chr3B 87.868 1764 193 17 2435 4190 157354159 157355909 0.000000e+00 2052.0
15 TraesCS3D01G268600 chr3B 93.034 890 48 6 746 1626 487029731 487030615 0.000000e+00 1288.0
16 TraesCS3D01G268600 chr3B 89.776 714 48 15 1 694 487028764 487029472 0.000000e+00 891.0
17 TraesCS3D01G268600 chr3B 81.996 461 41 16 9156 9596 487047285 487047723 4.260000e-93 353.0
18 TraesCS3D01G268600 chr3B 94.904 157 8 0 8977 9133 487047000 487047156 7.450000e-61 246.0
19 TraesCS3D01G268600 chr3B 100.000 28 0 0 24 51 721989395 721989368 1.700000e-02 52.8
20 TraesCS3D01G268600 chr4D 88.600 2228 225 21 1977 4189 132209748 132207535 0.000000e+00 2680.0
21 TraesCS3D01G268600 chr4D 89.470 1567 152 9 2634 4189 314637161 314635597 0.000000e+00 1967.0
22 TraesCS3D01G268600 chr4D 85.492 386 36 7 8034 8408 57028212 57027836 1.510000e-102 385.0
23 TraesCS3D01G268600 chr1B 85.855 2241 265 24 2000 4192 677536643 677534407 0.000000e+00 2335.0
24 TraesCS3D01G268600 chr1B 85.727 2249 235 48 1987 4189 216485491 216487699 0.000000e+00 2296.0
25 TraesCS3D01G268600 chr1B 86.390 1881 226 26 2063 3932 305417464 305419325 0.000000e+00 2028.0
26 TraesCS3D01G268600 chr1B 84.908 815 71 16 6445 7244 8688611 8689388 0.000000e+00 776.0
27 TraesCS3D01G268600 chr1B 84.908 815 71 21 6445 7244 8968763 8967986 0.000000e+00 776.0
28 TraesCS3D01G268600 chr1B 85.948 427 40 8 7993 8408 8690658 8691075 1.140000e-118 438.0
29 TraesCS3D01G268600 chr1B 85.948 427 40 8 7993 8408 8966330 8965913 1.140000e-118 438.0
30 TraesCS3D01G268600 chr1B 91.304 138 11 1 7433 7569 8690350 8690487 4.580000e-43 187.0
31 TraesCS3D01G268600 chr1B 87.349 166 16 5 7640 7801 8966539 8966375 1.650000e-42 185.0
32 TraesCS3D01G268600 chr1B 84.906 159 19 3 2000 2154 322425005 322424848 1.290000e-33 156.0
33 TraesCS3D01G268600 chr1B 92.045 88 6 1 7797 7883 289087293 289087380 1.310000e-23 122.0
34 TraesCS3D01G268600 chr1B 94.595 37 2 0 7877 7913 8690606 8690642 3.740000e-04 58.4
35 TraesCS3D01G268600 chr1B 97.059 34 1 0 7880 7913 8966379 8966346 3.740000e-04 58.4
36 TraesCS3D01G268600 chr4B 85.848 2240 264 37 1977 4189 392652415 392650202 0.000000e+00 2331.0
37 TraesCS3D01G268600 chr1D 87.422 1924 216 20 2289 4199 463989842 463987932 0.000000e+00 2189.0
38 TraesCS3D01G268600 chr1D 80.529 832 133 17 4737 5543 18395359 18394532 6.370000e-171 612.0
39 TraesCS3D01G268600 chr1D 85.751 386 35 7 8034 8408 464635923 464636299 3.250000e-104 390.0
40 TraesCS3D01G268600 chr1D 92.391 92 4 3 7797 7886 442374243 442374153 2.810000e-25 128.0
41 TraesCS3D01G268600 chr1D 93.103 87 5 1 7797 7882 201495069 201494983 1.010000e-24 126.0
42 TraesCS3D01G268600 chr1D 90.217 92 8 1 5777 5867 18392669 18392578 1.690000e-22 119.0
43 TraesCS3D01G268600 chr1D 90.909 88 7 1 7797 7883 201494984 201495071 6.090000e-22 117.0
44 TraesCS3D01G268600 chr4A 87.224 1675 183 22 2035 3698 161285172 161286826 0.000000e+00 1879.0
45 TraesCS3D01G268600 chr4A 89.601 1154 100 10 3046 4189 521531122 521532265 0.000000e+00 1448.0
46 TraesCS3D01G268600 chr2B 84.698 1686 217 23 2524 4189 195611229 195612893 0.000000e+00 1646.0
47 TraesCS3D01G268600 chr2B 77.723 808 136 25 4755 5536 21214955 21214166 1.140000e-123 455.0
48 TraesCS3D01G268600 chr2B 78.676 136 27 2 4054 4189 790699852 790699719 1.330000e-13 89.8
49 TraesCS3D01G268600 chr2B 77.465 142 30 2 4049 4189 332435372 332435512 6.180000e-12 84.2
50 TraesCS3D01G268600 chr2B 75.497 151 26 8 6060 6208 656515340 656515481 8.050000e-06 63.9
51 TraesCS3D01G268600 chr6D 84.493 819 78 16 6441 7243 360610527 360611312 0.000000e+00 763.0
52 TraesCS3D01G268600 chr6D 85.751 386 35 7 8034 8408 28648463 28648087 3.250000e-104 390.0
53 TraesCS3D01G268600 chr5B 84.211 817 75 18 6445 7244 693099449 693100228 0.000000e+00 745.0
54 TraesCS3D01G268600 chr5B 90.972 144 12 1 7427 7569 693101177 693101320 9.840000e-45 193.0
55 TraesCS3D01G268600 chr5B 91.379 58 5 0 5844 5901 38013638 38013695 7.990000e-11 80.5
56 TraesCS3D01G268600 chr2A 84.099 805 75 17 6445 7234 80997436 80998202 0.000000e+00 728.0
57 TraesCS3D01G268600 chr2A 85.514 428 41 8 7993 8408 80999511 80999929 2.480000e-115 427.0
58 TraesCS3D01G268600 chr2A 90.210 143 13 1 7428 7569 80999164 80999306 1.650000e-42 185.0
59 TraesCS3D01G268600 chr2A 90.698 86 7 1 7797 7882 593655910 593655826 7.880000e-21 113.0
60 TraesCS3D01G268600 chr2A 94.595 37 2 0 7877 7913 80999459 80999495 3.740000e-04 58.4
61 TraesCS3D01G268600 chr6A 80.756 847 126 21 4717 5536 108256008 108256844 2.280000e-175 627.0
62 TraesCS3D01G268600 chr6B 81.888 784 103 26 4633 5402 680802574 680801816 8.190000e-175 625.0
63 TraesCS3D01G268600 chr6B 81.472 788 107 26 4628 5402 258004774 258004013 2.290000e-170 610.0
64 TraesCS3D01G268600 chr6B 80.930 215 18 12 5700 5908 172463714 172463911 2.160000e-31 148.0
65 TraesCS3D01G268600 chr7D 82.627 708 97 21 4710 5402 631647580 631648276 3.840000e-168 603.0
66 TraesCS3D01G268600 chr7D 80.940 787 104 32 4633 5402 5505528 5504771 1.800000e-161 580.0
67 TraesCS3D01G268600 chr7D 78.133 375 55 16 5552 5909 5504639 5504275 7.550000e-51 213.0
68 TraesCS3D01G268600 chr7D 78.676 272 51 7 5644 5911 54065566 54065834 3.560000e-39 174.0
69 TraesCS3D01G268600 chr7D 88.421 95 9 1 7796 7890 602187853 602187761 7.880000e-21 113.0
70 TraesCS3D01G268600 chr5D 80.982 794 107 30 4624 5402 57581064 57580300 2.990000e-164 590.0
71 TraesCS3D01G268600 chr5D 78.723 282 49 8 5623 5901 242955864 242955591 2.750000e-40 178.0
72 TraesCS3D01G268600 chr5D 95.455 44 2 0 11 54 214928359 214928316 4.810000e-08 71.3
73 TraesCS3D01G268600 chr2D 80.940 787 103 31 4633 5402 552108826 552109582 6.460000e-161 579.0
74 TraesCS3D01G268600 chr2D 85.751 386 35 7 8034 8408 375659702 375659326 3.250000e-104 390.0
75 TraesCS3D01G268600 chr2D 97.059 34 1 0 18 51 474487605 474487572 3.740000e-04 58.4
76 TraesCS3D01G268600 chr1A 92.857 84 5 1 7801 7883 255486679 255486762 4.710000e-23 121.0
77 TraesCS3D01G268600 chr1A 86.000 100 13 1 5769 5867 20368200 20368101 1.320000e-18 106.0
78 TraesCS3D01G268600 chr7A 76.113 247 41 12 5661 5901 68053097 68052863 7.880000e-21 113.0
79 TraesCS3D01G268600 chr7A 100.000 28 0 0 27 54 22557785 22557758 1.700000e-02 52.8
80 TraesCS3D01G268600 chrUn 81.203 133 21 4 5781 5910 70451697 70451828 4.740000e-18 104.0
81 TraesCS3D01G268600 chr7B 75.862 203 41 7 2000 2197 189434435 189434634 7.940000e-16 97.1
82 TraesCS3D01G268600 chr5A 96.875 32 0 1 24 55 329749711 329749681 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G268600 chr3D 373317177 373326776 9599 False 8624.500000 14109 100.000000 1 9600 2 chr3D.!!$F1 9599
1 TraesCS3D01G268600 chr3A 494717432 494727297 9865 False 2626.200000 10113 90.611000 1 9515 5 chr3A.!!$F3 9514
2 TraesCS3D01G268600 chr3A 461147611 461149188 1577 False 1934.000000 1934 88.812000 2355 3939 1 chr3A.!!$F1 1584
3 TraesCS3D01G268600 chr3A 644923118 644923904 786 False 754.000000 754 84.268000 6441 7243 1 chr3A.!!$F2 802
4 TraesCS3D01G268600 chr3B 60370432 60372307 1875 False 2159.000000 2159 87.606000 2330 4189 1 chr3B.!!$F1 1859
5 TraesCS3D01G268600 chr3B 157354159 157355909 1750 False 2052.000000 2052 87.868000 2435 4190 1 chr3B.!!$F2 1755
6 TraesCS3D01G268600 chr3B 487043620 487047723 4103 False 1554.666667 4065 89.516667 5910 9596 3 chr3B.!!$F4 3686
7 TraesCS3D01G268600 chr3B 487028764 487030615 1851 False 1089.500000 1288 91.405000 1 1626 2 chr3B.!!$F3 1625
8 TraesCS3D01G268600 chr4D 132207535 132209748 2213 True 2680.000000 2680 88.600000 1977 4189 1 chr4D.!!$R2 2212
9 TraesCS3D01G268600 chr4D 314635597 314637161 1564 True 1967.000000 1967 89.470000 2634 4189 1 chr4D.!!$R3 1555
10 TraesCS3D01G268600 chr1B 677534407 677536643 2236 True 2335.000000 2335 85.855000 2000 4192 1 chr1B.!!$R2 2192
11 TraesCS3D01G268600 chr1B 216485491 216487699 2208 False 2296.000000 2296 85.727000 1987 4189 1 chr1B.!!$F1 2202
12 TraesCS3D01G268600 chr1B 305417464 305419325 1861 False 2028.000000 2028 86.390000 2063 3932 1 chr1B.!!$F3 1869
13 TraesCS3D01G268600 chr1B 8688611 8691075 2464 False 364.850000 776 89.188750 6445 8408 4 chr1B.!!$F4 1963
14 TraesCS3D01G268600 chr1B 8965913 8968763 2850 True 364.350000 776 88.816000 6445 8408 4 chr1B.!!$R3 1963
15 TraesCS3D01G268600 chr4B 392650202 392652415 2213 True 2331.000000 2331 85.848000 1977 4189 1 chr4B.!!$R1 2212
16 TraesCS3D01G268600 chr1D 463987932 463989842 1910 True 2189.000000 2189 87.422000 2289 4199 1 chr1D.!!$R3 1910
17 TraesCS3D01G268600 chr1D 18392578 18395359 2781 True 365.500000 612 85.373000 4737 5867 2 chr1D.!!$R4 1130
18 TraesCS3D01G268600 chr4A 161285172 161286826 1654 False 1879.000000 1879 87.224000 2035 3698 1 chr4A.!!$F1 1663
19 TraesCS3D01G268600 chr4A 521531122 521532265 1143 False 1448.000000 1448 89.601000 3046 4189 1 chr4A.!!$F2 1143
20 TraesCS3D01G268600 chr2B 195611229 195612893 1664 False 1646.000000 1646 84.698000 2524 4189 1 chr2B.!!$F1 1665
21 TraesCS3D01G268600 chr2B 21214166 21214955 789 True 455.000000 455 77.723000 4755 5536 1 chr2B.!!$R1 781
22 TraesCS3D01G268600 chr6D 360610527 360611312 785 False 763.000000 763 84.493000 6441 7243 1 chr6D.!!$F1 802
23 TraesCS3D01G268600 chr5B 693099449 693101320 1871 False 469.000000 745 87.591500 6445 7569 2 chr5B.!!$F2 1124
24 TraesCS3D01G268600 chr2A 80997436 80999929 2493 False 349.600000 728 88.604500 6445 8408 4 chr2A.!!$F1 1963
25 TraesCS3D01G268600 chr6A 108256008 108256844 836 False 627.000000 627 80.756000 4717 5536 1 chr6A.!!$F1 819
26 TraesCS3D01G268600 chr6B 680801816 680802574 758 True 625.000000 625 81.888000 4633 5402 1 chr6B.!!$R2 769
27 TraesCS3D01G268600 chr6B 258004013 258004774 761 True 610.000000 610 81.472000 4628 5402 1 chr6B.!!$R1 774
28 TraesCS3D01G268600 chr7D 631647580 631648276 696 False 603.000000 603 82.627000 4710 5402 1 chr7D.!!$F2 692
29 TraesCS3D01G268600 chr7D 5504275 5505528 1253 True 396.500000 580 79.536500 4633 5909 2 chr7D.!!$R2 1276
30 TraesCS3D01G268600 chr5D 57580300 57581064 764 True 590.000000 590 80.982000 4624 5402 1 chr5D.!!$R1 778
31 TraesCS3D01G268600 chr2D 552108826 552109582 756 False 579.000000 579 80.940000 4633 5402 1 chr2D.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 661 0.036388 CCAGTGCATCACCGTTACCT 60.036 55.000 0.0 0.0 34.49 3.08 F
641 663 1.066858 CAGTGCATCACCGTTACCTCT 60.067 52.381 0.0 0.0 34.49 3.69 F
902 1134 1.755008 CGACCTGTCCTCTCCTCCC 60.755 68.421 0.0 0.0 0.00 4.30 F
2559 2851 1.079127 CACATCTCCACCACGACCC 60.079 63.158 0.0 0.0 0.00 4.46 F
4318 4698 0.034186 ATCGTGCCATGTGTTCCCAT 60.034 50.000 0.0 0.0 0.00 4.00 F
4474 4857 0.252103 TAGGCGACTTGAGGGGAGTT 60.252 55.000 0.0 0.0 43.67 3.01 F
5414 5826 0.266152 CCATCCCTACCAGACCCTCT 59.734 60.000 0.0 0.0 0.00 3.69 F
5750 7825 0.603975 GCTATCATTGAGCGGGGGAC 60.604 60.000 0.0 0.0 0.00 4.46 F
6252 8374 1.105457 TGGTTAGCTTGATGCCATGC 58.895 50.000 0.0 0.0 44.23 4.06 F
6850 8990 2.821546 TGCTGATACATAACACGCCTC 58.178 47.619 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2207 0.036388 GAGTTGCCCTGAATCGACCA 60.036 55.000 0.00 0.0 0.00 4.02 R
1967 2208 0.744771 GGAGTTGCCCTGAATCGACC 60.745 60.000 0.00 0.0 0.00 4.79 R
2760 3052 0.258774 TGGCCTTTCTCCCTATTGCC 59.741 55.000 3.32 0.0 37.90 4.52 R
4326 4706 0.687757 ATCTCGTGCCCTTAGAGCCA 60.688 55.000 0.00 0.0 32.42 4.75 R
5284 5694 1.081092 CCTCACCCTCTCCTTCCCA 59.919 63.158 0.00 0.0 0.00 4.37 R
5462 5887 1.284313 CCCTCCCTTGAGCTTCTTCT 58.716 55.000 0.00 0.0 37.29 2.85 R
6811 8947 1.198178 CAAAAATGGCATGGCAGCAAC 59.802 47.619 27.02 0.0 35.83 4.17 R
7234 9376 2.069273 CGTCCAGTTTTCTGCTAGGTG 58.931 52.381 0.00 0.0 45.76 4.00 R
8130 11419 1.168407 TGCCAGAGTGCAAGTTGAGC 61.168 55.000 7.16 0.0 38.56 4.26 R
8757 12060 0.890683 CCTGCTAGGCACAAAAAGGG 59.109 55.000 0.00 0.0 33.79 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.682209 GGATGGGCAACTGACATGCT 60.682 55.000 0.00 0.00 43.34 3.79
56 57 3.063084 AGGACTCCGTCACTCCGC 61.063 66.667 0.00 0.00 33.68 5.54
97 99 1.687494 GACTCAGCGTCCACGATTGC 61.687 60.000 2.58 0.00 43.02 3.56
118 120 1.004595 GCCTGGATAAACGACCGAAC 58.995 55.000 0.00 0.00 0.00 3.95
165 167 1.280746 CAGGCAGCAACAACACGAG 59.719 57.895 0.00 0.00 0.00 4.18
174 176 0.687354 AACAACACGAGCAGATCCCT 59.313 50.000 0.00 0.00 0.00 4.20
320 339 1.153429 GCGCAACTCGAGGGGTTAT 60.153 57.895 18.41 0.00 41.67 1.89
392 412 5.754782 AGTGCCATTCAACACTAATATGGA 58.245 37.500 0.00 0.00 45.09 3.41
410 430 3.376636 TGGACCATCGTTATGTAGGGAA 58.623 45.455 0.00 0.00 0.00 3.97
435 455 3.623060 GGATGCTTGAAATGCTTCTACGA 59.377 43.478 0.00 0.00 39.89 3.43
442 462 6.582295 GCTTGAAATGCTTCTACGAATGAAAA 59.418 34.615 0.00 0.00 33.64 2.29
586 608 2.184579 GGTGGAGGCGTAGTGAGC 59.815 66.667 0.00 0.00 0.00 4.26
620 642 4.752101 ACGAGATTTATGGCACTTATGAGC 59.248 41.667 0.00 0.00 0.00 4.26
639 661 0.036388 CCAGTGCATCACCGTTACCT 60.036 55.000 0.00 0.00 34.49 3.08
640 662 1.359848 CAGTGCATCACCGTTACCTC 58.640 55.000 0.00 0.00 34.49 3.85
641 663 1.066858 CAGTGCATCACCGTTACCTCT 60.067 52.381 0.00 0.00 34.49 3.69
776 1008 4.591321 AGGGCCTATTTGAATCAAGTGA 57.409 40.909 2.82 0.00 0.00 3.41
902 1134 1.755008 CGACCTGTCCTCTCCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
1180 1417 2.426024 GCTTTACGGGAGGGGATTTTTC 59.574 50.000 0.00 0.00 0.00 2.29
1510 1747 3.912496 TCTTTGCTCTGGCTATTGCTA 57.088 42.857 0.00 0.00 39.59 3.49
1546 1783 4.312443 TCTTCGTGTAGGTTCCATTTGTC 58.688 43.478 0.00 0.00 0.00 3.18
1593 1834 4.988540 GCTTTGTTTACCCCAACTGAATTC 59.011 41.667 0.00 0.00 0.00 2.17
1648 1889 5.423015 GAGCTCTCTCAATCAATTGGTGTA 58.577 41.667 6.43 0.00 39.16 2.90
1652 1893 6.238593 GCTCTCTCAATCAATTGGTGTATTCC 60.239 42.308 5.42 0.00 38.30 3.01
2012 2253 4.376170 ACCCCGACCCCAAATGGC 62.376 66.667 0.00 0.00 0.00 4.40
2095 2338 2.226330 CCAATGTCCGTTTTCAGTCCA 58.774 47.619 0.00 0.00 0.00 4.02
2395 2679 2.909965 TGGTTCCTTGTTGCCGGC 60.910 61.111 22.73 22.73 0.00 6.13
2416 2700 1.248785 TGAGAGAAGCTACGGCCGTT 61.249 55.000 38.94 19.76 39.73 4.44
2451 2737 2.919494 GCAACAACTTCCGGCAGGG 61.919 63.158 5.96 0.00 38.33 4.45
2559 2851 1.079127 CACATCTCCACCACGACCC 60.079 63.158 0.00 0.00 0.00 4.46
2561 2853 3.075005 ATCTCCACCACGACCCCG 61.075 66.667 0.00 0.00 42.50 5.73
2760 3052 1.361668 CCATGCTCCGTCCTTGAACG 61.362 60.000 0.00 0.00 42.24 3.95
2813 3105 3.609853 TGCCGATTACTTTGAGAATGCT 58.390 40.909 0.00 0.00 0.00 3.79
2967 3266 4.201763 GCTTCTCTTCTTACCAGAAATGCG 60.202 45.833 0.00 0.00 38.63 4.73
3031 3336 2.117137 CGTGGATGAGTATGTGCGTAC 58.883 52.381 0.00 0.00 0.00 3.67
3062 3367 6.266558 AGTCCATATGTCTCCTCTCAATGTAC 59.733 42.308 1.24 0.00 0.00 2.90
3069 3374 5.869344 TGTCTCCTCTCAATGTACAATTTCG 59.131 40.000 0.00 0.00 0.00 3.46
3117 3423 1.748493 CTGAGTACCTGAGAGAGCCAC 59.252 57.143 0.00 0.00 0.00 5.01
3238 3547 3.384532 ATTTGCTTGGCAGGGGCG 61.385 61.111 0.00 0.00 40.61 6.13
3252 3564 2.044352 GGCGGTACAAGGGGCATT 60.044 61.111 0.00 0.00 0.00 3.56
3418 3731 2.106511 CCCCAGAGGTCAACTTTGAGAA 59.893 50.000 0.00 0.00 37.98 2.87
3569 3883 3.031736 GCTAGGAAGGATGTGGAGTGTA 58.968 50.000 0.00 0.00 0.00 2.90
3575 3889 4.695928 GGAAGGATGTGGAGTGTACTTTTC 59.304 45.833 0.00 0.00 0.00 2.29
3596 3910 2.350522 GTGTGCTTCAATCTCGATGGT 58.649 47.619 0.00 0.00 0.00 3.55
4234 4614 5.519927 CCACAACAATCCAGAGTTTGTTTTC 59.480 40.000 0.00 0.00 41.69 2.29
4249 4629 3.238597 TGTTTTCCTCCTTTCCCCATTG 58.761 45.455 0.00 0.00 0.00 2.82
4276 4656 1.081242 GTGTTGACCATGCCTTGCG 60.081 57.895 0.00 0.00 0.00 4.85
4304 4684 1.442769 CCCAGGTGAAGTCAATCGTG 58.557 55.000 0.00 0.00 0.00 4.35
4318 4698 0.034186 ATCGTGCCATGTGTTCCCAT 60.034 50.000 0.00 0.00 0.00 4.00
4326 4706 0.605319 ATGTGTTCCCATCGCGTTGT 60.605 50.000 15.50 0.00 0.00 3.32
4334 4714 0.739462 CCATCGCGTTGTGGCTCTAA 60.739 55.000 15.50 0.00 0.00 2.10
4366 4746 0.387239 CTTTTACTGTTGCGCTGGCC 60.387 55.000 9.73 0.00 38.85 5.36
4389 4769 2.727123 TGGACAAGGAAAAGACAGCA 57.273 45.000 0.00 0.00 0.00 4.41
4391 4771 1.609072 GGACAAGGAAAAGACAGCACC 59.391 52.381 0.00 0.00 0.00 5.01
4474 4857 0.252103 TAGGCGACTTGAGGGGAGTT 60.252 55.000 0.00 0.00 43.67 3.01
4476 4859 1.446272 GCGACTTGAGGGGAGTTCG 60.446 63.158 0.00 0.00 0.00 3.95
4485 4868 0.602060 AGGGGAGTTCGACGTCTTTC 59.398 55.000 14.70 5.56 0.00 2.62
4525 4908 1.226974 GCGAGCATGCGTCTAGGAA 60.227 57.895 13.01 0.00 0.00 3.36
4530 4913 2.104331 ATGCGTCTAGGAACGGCG 59.896 61.111 4.80 4.80 42.81 6.46
4536 4919 1.082679 GTCTAGGAACGGCGGCTTTC 61.083 60.000 18.43 18.43 0.00 2.62
4566 4949 0.890542 ATTCAGCGGTTGCAAGCAGA 60.891 50.000 26.71 17.96 46.23 4.26
4579 4962 3.490890 GCAGACGGCTGGATGTTC 58.509 61.111 22.33 0.00 42.53 3.18
4580 4963 1.375908 GCAGACGGCTGGATGTTCA 60.376 57.895 22.33 0.00 42.53 3.18
4631 5014 2.154462 CTTTCCTGGCAGTTGACGAAT 58.846 47.619 14.43 0.00 0.00 3.34
4636 5019 2.354704 CCTGGCAGTTGACGAATAAGGA 60.355 50.000 14.43 0.00 0.00 3.36
4700 5083 8.920665 CACAAGTTCATACAAGTCAAAACAAAA 58.079 29.630 0.00 0.00 0.00 2.44
4773 5158 2.158608 AGCAAAGGAGCCACTAACAAGT 60.159 45.455 0.00 0.00 34.23 3.16
4833 5219 1.291877 GGCGAACAAGACGAGCACAT 61.292 55.000 0.00 0.00 0.00 3.21
4838 5224 2.462456 ACAAGACGAGCACATGATGT 57.538 45.000 0.00 0.00 0.00 3.06
4862 5248 4.509737 GACGAGGTAGTGGCCCGC 62.510 72.222 0.00 0.00 0.00 6.13
4909 5295 0.980231 CAACTCCCTAGAGGCCAGCT 60.980 60.000 5.01 4.10 45.11 4.24
5202 5611 1.954146 CGACCACCACTCCGTTGTG 60.954 63.158 0.00 0.00 37.66 3.33
5258 5668 2.351276 GCCGTCACCACCCAATCT 59.649 61.111 0.00 0.00 0.00 2.40
5284 5694 0.486879 TTTGGGCTTTCACCTGGGAT 59.513 50.000 0.00 0.00 0.00 3.85
5414 5826 0.266152 CCATCCCTACCAGACCCTCT 59.734 60.000 0.00 0.00 0.00 3.69
5589 6069 0.969149 TGATTCTCGACTGTGGCTGT 59.031 50.000 0.00 0.00 0.00 4.40
5739 7814 2.029073 CCCGCGTCGGCTATCATT 59.971 61.111 4.92 0.00 46.86 2.57
5750 7825 0.603975 GCTATCATTGAGCGGGGGAC 60.604 60.000 0.00 0.00 0.00 4.46
5940 8034 1.666872 CGTTCGGTGGTTGAGACCC 60.667 63.158 0.00 0.00 45.92 4.46
5984 8078 3.138304 TGTGGTGTATTCTGTTGTGCTC 58.862 45.455 0.00 0.00 0.00 4.26
5998 8092 2.503331 TGTGCTCTTGTGTGGTAATGG 58.497 47.619 0.00 0.00 0.00 3.16
6057 8151 3.266636 TGTTGCCACCAATACTATCACG 58.733 45.455 0.00 0.00 32.75 4.35
6252 8374 1.105457 TGGTTAGCTTGATGCCATGC 58.895 50.000 0.00 0.00 44.23 4.06
6388 8510 6.206634 AGGAAGTTGCGTTGATAGAAATTTCA 59.793 34.615 19.99 6.84 0.00 2.69
6408 8530 5.101648 TCATGAGGTCATAGATGTGCAAA 57.898 39.130 0.00 0.00 34.26 3.68
6458 8580 5.066634 TGTTTCGCTGTAACCTTTTTGATGA 59.933 36.000 0.00 0.00 0.00 2.92
6504 8626 7.089770 TGTAAACTTGAATTGCTAACACACA 57.910 32.000 0.00 0.00 0.00 3.72
6678 8800 8.819974 GCCATGTTTAAATATCAATGGAGTTTG 58.180 33.333 15.35 0.00 0.00 2.93
6713 8835 6.591935 TGGATGGCTTTATCTAACCTGTAAG 58.408 40.000 0.00 0.00 0.00 2.34
6715 8837 6.706716 GGATGGCTTTATCTAACCTGTAAGTC 59.293 42.308 0.00 0.00 0.00 3.01
6850 8990 2.821546 TGCTGATACATAACACGCCTC 58.178 47.619 0.00 0.00 0.00 4.70
6890 9032 4.263771 GGGAACTGATTTACTTTCTCCCCA 60.264 45.833 0.00 0.00 36.09 4.96
6938 9080 6.109359 CAGCTACTTTCTATTACAGGTTGCT 58.891 40.000 0.00 0.00 36.56 3.91
7044 9186 8.325787 TCTCTGTTCCCTTTTTGCATATACTTA 58.674 33.333 0.00 0.00 0.00 2.24
7075 9217 4.240881 TGAATTAAGAAGCATGGCTCCT 57.759 40.909 0.00 0.00 38.25 3.69
7095 9237 6.677781 TCCTAATTTCGTTTAGCATGGAAG 57.322 37.500 0.00 0.00 0.00 3.46
7337 9496 6.148480 CGAGAACTTTCAAGTCCATTTCTCAT 59.852 38.462 14.43 0.00 37.58 2.90
7338 9497 7.446001 AGAACTTTCAAGTCCATTTCTCATC 57.554 36.000 0.00 0.00 38.57 2.92
7339 9498 5.869753 ACTTTCAAGTCCATTTCTCATCG 57.130 39.130 0.00 0.00 32.86 3.84
7340 9499 5.551233 ACTTTCAAGTCCATTTCTCATCGA 58.449 37.500 0.00 0.00 32.86 3.59
7341 9500 5.997746 ACTTTCAAGTCCATTTCTCATCGAA 59.002 36.000 0.00 0.00 32.86 3.71
7342 9501 5.862924 TTCAAGTCCATTTCTCATCGAAC 57.137 39.130 0.00 0.00 0.00 3.95
7343 9502 5.152623 TCAAGTCCATTTCTCATCGAACT 57.847 39.130 0.00 0.00 0.00 3.01
7344 9503 5.171476 TCAAGTCCATTTCTCATCGAACTC 58.829 41.667 0.00 0.00 0.00 3.01
7345 9504 4.808414 AGTCCATTTCTCATCGAACTCA 57.192 40.909 0.00 0.00 0.00 3.41
7961 11250 7.713734 AGTTTGATGATCTCCAAAACATCAT 57.286 32.000 12.40 0.00 45.05 2.45
8042 11331 8.047911 TCCATTCGTATTGGTCAAGGTATTTTA 58.952 33.333 0.00 0.00 35.64 1.52
8130 11419 8.964476 ATAACTGTATTTAGATCACCCTTGTG 57.036 34.615 0.00 0.00 44.18 3.33
8309 11609 2.795175 AAACACTGACGATCACGAGT 57.205 45.000 0.00 0.00 42.66 4.18
8439 11740 6.513180 TCGAGTTCAATGGGTATGTATCTTC 58.487 40.000 0.00 0.00 0.00 2.87
8442 11744 8.141909 CGAGTTCAATGGGTATGTATCTTCTTA 58.858 37.037 0.00 0.00 0.00 2.10
8478 11780 4.141937 TGTCCATATTAGCAGTTCGAGCTT 60.142 41.667 0.00 0.00 43.25 3.74
8485 11787 0.992802 GCAGTTCGAGCTTCTAACCG 59.007 55.000 0.00 0.00 0.00 4.44
8757 12060 7.728847 AGATTTTAACCTGCAAATTTTGTCC 57.271 32.000 10.65 0.00 0.00 4.02
8827 12130 8.282592 CGTATATGTGCTGCTATGTAAACATTT 58.717 33.333 0.00 0.00 37.76 2.32
8841 12145 3.971032 AACATTTATAGCAGCTTCGGC 57.029 42.857 0.00 0.00 42.17 5.54
8866 12170 5.228635 GCACAAGCTTCGTTGATTATCATTG 59.771 40.000 0.00 0.00 37.91 2.82
8877 12181 9.112725 TCGTTGATTATCATTGATGATCTGTTT 57.887 29.630 23.92 0.00 43.72 2.83
8881 12185 8.843262 TGATTATCATTGATGATCTGTTTGTCC 58.157 33.333 23.92 4.37 43.72 4.02
8882 12186 8.991783 ATTATCATTGATGATCTGTTTGTCCT 57.008 30.769 9.61 0.00 43.72 3.85
8884 12188 9.551734 TTATCATTGATGATCTGTTTGTCCTAG 57.448 33.333 9.61 0.00 43.72 3.02
8885 12189 6.950842 TCATTGATGATCTGTTTGTCCTAGT 58.049 36.000 0.00 0.00 0.00 2.57
8886 12190 6.820152 TCATTGATGATCTGTTTGTCCTAGTG 59.180 38.462 0.00 0.00 0.00 2.74
8887 12191 5.745312 TGATGATCTGTTTGTCCTAGTGT 57.255 39.130 0.00 0.00 0.00 3.55
8888 12192 6.114187 TGATGATCTGTTTGTCCTAGTGTT 57.886 37.500 0.00 0.00 0.00 3.32
8889 12193 6.166279 TGATGATCTGTTTGTCCTAGTGTTC 58.834 40.000 0.00 0.00 0.00 3.18
8890 12194 5.808366 TGATCTGTTTGTCCTAGTGTTCT 57.192 39.130 0.00 0.00 0.00 3.01
8891 12195 6.174720 TGATCTGTTTGTCCTAGTGTTCTT 57.825 37.500 0.00 0.00 0.00 2.52
8892 12196 6.591935 TGATCTGTTTGTCCTAGTGTTCTTT 58.408 36.000 0.00 0.00 0.00 2.52
8893 12197 7.054124 TGATCTGTTTGTCCTAGTGTTCTTTT 58.946 34.615 0.00 0.00 0.00 2.27
8894 12198 6.920569 TCTGTTTGTCCTAGTGTTCTTTTC 57.079 37.500 0.00 0.00 0.00 2.29
8895 12199 5.820947 TCTGTTTGTCCTAGTGTTCTTTTCC 59.179 40.000 0.00 0.00 0.00 3.13
8896 12200 4.885325 TGTTTGTCCTAGTGTTCTTTTCCC 59.115 41.667 0.00 0.00 0.00 3.97
8897 12201 5.131067 GTTTGTCCTAGTGTTCTTTTCCCT 58.869 41.667 0.00 0.00 0.00 4.20
8898 12202 5.382664 TTGTCCTAGTGTTCTTTTCCCTT 57.617 39.130 0.00 0.00 0.00 3.95
8899 12203 4.714632 TGTCCTAGTGTTCTTTTCCCTTG 58.285 43.478 0.00 0.00 0.00 3.61
8900 12204 4.072839 GTCCTAGTGTTCTTTTCCCTTGG 58.927 47.826 0.00 0.00 0.00 3.61
8901 12205 2.820197 CCTAGTGTTCTTTTCCCTTGGC 59.180 50.000 0.00 0.00 0.00 4.52
8902 12206 2.452600 AGTGTTCTTTTCCCTTGGCA 57.547 45.000 0.00 0.00 0.00 4.92
8903 12207 2.745968 AGTGTTCTTTTCCCTTGGCAA 58.254 42.857 0.00 0.00 0.00 4.52
8904 12208 2.695147 AGTGTTCTTTTCCCTTGGCAAG 59.305 45.455 20.31 20.31 0.00 4.01
8905 12209 2.430694 GTGTTCTTTTCCCTTGGCAAGT 59.569 45.455 24.57 0.00 0.00 3.16
8906 12210 2.693074 TGTTCTTTTCCCTTGGCAAGTC 59.307 45.455 24.57 5.42 0.00 3.01
8907 12211 2.693074 GTTCTTTTCCCTTGGCAAGTCA 59.307 45.455 24.57 8.75 0.00 3.41
8908 12212 3.243359 TCTTTTCCCTTGGCAAGTCAT 57.757 42.857 24.57 0.00 0.00 3.06
8909 12213 3.575805 TCTTTTCCCTTGGCAAGTCATT 58.424 40.909 24.57 0.00 0.00 2.57
8910 12214 3.966665 TCTTTTCCCTTGGCAAGTCATTT 59.033 39.130 24.57 0.00 0.00 2.32
8911 12215 5.144100 TCTTTTCCCTTGGCAAGTCATTTA 58.856 37.500 24.57 5.88 0.00 1.40
8912 12216 5.600484 TCTTTTCCCTTGGCAAGTCATTTAA 59.400 36.000 24.57 10.49 0.00 1.52
8913 12217 4.864704 TTCCCTTGGCAAGTCATTTAAC 57.135 40.909 24.57 0.00 0.00 2.01
8914 12218 4.112634 TCCCTTGGCAAGTCATTTAACT 57.887 40.909 24.57 0.00 0.00 2.24
8915 12219 4.479158 TCCCTTGGCAAGTCATTTAACTT 58.521 39.130 24.57 0.00 40.08 2.66
8916 12220 4.898861 TCCCTTGGCAAGTCATTTAACTTT 59.101 37.500 24.57 0.00 37.38 2.66
8917 12221 5.010617 TCCCTTGGCAAGTCATTTAACTTTC 59.989 40.000 24.57 0.00 37.38 2.62
8918 12222 5.011023 CCCTTGGCAAGTCATTTAACTTTCT 59.989 40.000 24.57 0.00 37.38 2.52
8919 12223 6.208599 CCCTTGGCAAGTCATTTAACTTTCTA 59.791 38.462 24.57 0.00 37.38 2.10
8920 12224 7.255801 CCCTTGGCAAGTCATTTAACTTTCTAA 60.256 37.037 24.57 0.00 37.38 2.10
8921 12225 7.595130 CCTTGGCAAGTCATTTAACTTTCTAAC 59.405 37.037 24.57 0.00 37.38 2.34
8922 12226 7.575414 TGGCAAGTCATTTAACTTTCTAACA 57.425 32.000 0.00 0.00 37.38 2.41
8923 12227 8.001881 TGGCAAGTCATTTAACTTTCTAACAA 57.998 30.769 0.00 0.00 37.38 2.83
8924 12228 7.918562 TGGCAAGTCATTTAACTTTCTAACAAC 59.081 33.333 0.00 0.00 37.38 3.32
8925 12229 7.918562 GGCAAGTCATTTAACTTTCTAACAACA 59.081 33.333 0.00 0.00 37.38 3.33
8926 12230 8.958043 GCAAGTCATTTAACTTTCTAACAACAG 58.042 33.333 0.00 0.00 37.38 3.16
8934 12238 8.996988 TTAACTTTCTAACAACAGTTAATGCG 57.003 30.769 0.00 0.00 36.99 4.73
8935 12239 6.613755 ACTTTCTAACAACAGTTAATGCGT 57.386 33.333 0.00 0.00 0.00 5.24
8936 12240 6.427150 ACTTTCTAACAACAGTTAATGCGTG 58.573 36.000 0.00 0.00 0.00 5.34
8937 12241 5.351233 TTCTAACAACAGTTAATGCGTGG 57.649 39.130 0.00 0.00 0.00 4.94
8938 12242 4.633175 TCTAACAACAGTTAATGCGTGGA 58.367 39.130 0.00 0.00 0.00 4.02
8939 12243 3.619233 AACAACAGTTAATGCGTGGAC 57.381 42.857 0.00 0.00 0.00 4.02
9073 12720 6.547880 TCGATACTTCTTCCTTCTAAGCTCAT 59.452 38.462 0.00 0.00 0.00 2.90
9107 12754 4.577875 CTGAGAGCTGAAAGAAATGTCCT 58.422 43.478 0.00 0.00 34.07 3.85
9133 12780 3.012518 AGCTGCATTTGCTACTTGGTAG 58.987 45.455 1.02 0.82 42.66 3.18
9134 12781 2.098117 GCTGCATTTGCTACTTGGTAGG 59.902 50.000 3.94 0.00 42.66 3.18
9135 12782 3.609853 CTGCATTTGCTACTTGGTAGGA 58.390 45.455 3.94 1.33 42.66 2.94
9136 12783 4.202441 CTGCATTTGCTACTTGGTAGGAT 58.798 43.478 3.94 0.00 36.44 3.24
9137 12784 3.947196 TGCATTTGCTACTTGGTAGGATG 59.053 43.478 3.94 2.30 36.44 3.51
9138 12785 4.199310 GCATTTGCTACTTGGTAGGATGA 58.801 43.478 6.81 0.00 36.44 2.92
9139 12786 4.640201 GCATTTGCTACTTGGTAGGATGAA 59.360 41.667 6.81 0.00 36.44 2.57
9140 12787 5.220931 GCATTTGCTACTTGGTAGGATGAAG 60.221 44.000 6.81 0.00 36.44 3.02
9141 12788 5.499004 TTTGCTACTTGGTAGGATGAAGT 57.501 39.130 6.81 0.00 36.44 3.01
9143 12790 6.614694 TTGCTACTTGGTAGGATGAAGTTA 57.385 37.500 6.81 0.00 36.44 2.24
9144 12791 6.808321 TGCTACTTGGTAGGATGAAGTTAT 57.192 37.500 6.81 0.00 36.71 1.89
9146 12793 5.467063 GCTACTTGGTAGGATGAAGTTATGC 59.533 44.000 6.81 0.00 36.71 3.14
9150 12797 6.719370 ACTTGGTAGGATGAAGTTATGCAAAA 59.281 34.615 0.00 0.00 0.00 2.44
9151 12798 7.397192 ACTTGGTAGGATGAAGTTATGCAAAAT 59.603 33.333 0.00 0.00 0.00 1.82
9152 12799 7.099266 TGGTAGGATGAAGTTATGCAAAATG 57.901 36.000 0.00 0.00 0.00 2.32
9153 12800 5.979517 GGTAGGATGAAGTTATGCAAAATGC 59.020 40.000 0.00 0.00 45.29 3.56
9188 12942 5.862323 TCGTCTGTGATTTAGAAACTGCTAC 59.138 40.000 0.00 0.00 0.00 3.58
9220 12974 8.429641 AGTTCGGAACATATAGTCACCATAAAT 58.570 33.333 21.86 0.00 0.00 1.40
9235 12989 7.819415 GTCACCATAAATATCTGGATCATTCGA 59.181 37.037 0.00 0.00 36.35 3.71
9272 13026 3.379452 CTCCCCCTTGAGATTAGACAGT 58.621 50.000 0.00 0.00 34.11 3.55
9273 13027 4.547671 CTCCCCCTTGAGATTAGACAGTA 58.452 47.826 0.00 0.00 34.11 2.74
9274 13028 4.287552 TCCCCCTTGAGATTAGACAGTAC 58.712 47.826 0.00 0.00 0.00 2.73
9278 13032 4.202030 CCCTTGAGATTAGACAGTACCGAC 60.202 50.000 0.00 0.00 0.00 4.79
9342 13126 2.956333 CGGGTTTGGGGATTAGGATTTC 59.044 50.000 0.00 0.00 0.00 2.17
9347 13131 3.864789 TGGGGATTAGGATTTCAGCTC 57.135 47.619 0.00 0.00 0.00 4.09
9368 13152 5.488341 CTCGAGGAGGAAGATAAACCAAAA 58.512 41.667 3.91 0.00 0.00 2.44
9371 13155 7.626390 TCGAGGAGGAAGATAAACCAAAATTA 58.374 34.615 0.00 0.00 0.00 1.40
9395 13179 1.539388 GATGTCAATCCAACGGCACAA 59.461 47.619 0.00 0.00 0.00 3.33
9412 13196 4.442753 GGCACAAAAGTTTCCAAGAATCCA 60.443 41.667 0.00 0.00 0.00 3.41
9430 13214 3.204526 TCCAACGGCGAAGTTCTTTTAA 58.795 40.909 16.62 0.00 30.96 1.52
9436 13220 3.846335 CGGCGAAGTTCTTTTAAAGCATC 59.154 43.478 0.00 0.00 0.00 3.91
9437 13221 4.378459 CGGCGAAGTTCTTTTAAAGCATCT 60.378 41.667 0.00 0.00 0.00 2.90
9438 13222 5.163893 CGGCGAAGTTCTTTTAAAGCATCTA 60.164 40.000 0.00 0.00 0.00 1.98
9440 13224 6.348213 GGCGAAGTTCTTTTAAAGCATCTACA 60.348 38.462 0.00 0.00 0.00 2.74
9445 13229 6.372937 AGTTCTTTTAAAGCATCTACAGCCTC 59.627 38.462 0.00 0.00 0.00 4.70
9446 13230 5.804639 TCTTTTAAAGCATCTACAGCCTCA 58.195 37.500 0.00 0.00 0.00 3.86
9460 13244 4.401022 ACAGCCTCAATGAACAAATCTGA 58.599 39.130 0.00 0.00 0.00 3.27
9461 13245 4.217118 ACAGCCTCAATGAACAAATCTGAC 59.783 41.667 0.00 0.00 0.00 3.51
9474 13261 7.567250 TGAACAAATCTGACCCCTATATGTCTA 59.433 37.037 0.00 0.00 32.67 2.59
9476 13263 6.015350 ACAAATCTGACCCCTATATGTCTACG 60.015 42.308 0.00 0.00 32.67 3.51
9486 13273 3.587095 TGTCTACGGACAGGAGCG 58.413 61.111 0.00 0.00 46.19 5.03
9505 13292 3.140814 GCCGGCCCTCATTTGTCC 61.141 66.667 18.11 0.00 0.00 4.02
9506 13293 2.354729 CCGGCCCTCATTTGTCCA 59.645 61.111 0.00 0.00 0.00 4.02
9515 13302 1.811965 CTCATTTGTCCATGTCCGCAA 59.188 47.619 0.00 0.00 0.00 4.85
9516 13303 1.539388 TCATTTGTCCATGTCCGCAAC 59.461 47.619 0.00 0.00 0.00 4.17
9517 13304 0.887933 ATTTGTCCATGTCCGCAACC 59.112 50.000 0.00 0.00 0.00 3.77
9518 13305 0.466372 TTTGTCCATGTCCGCAACCA 60.466 50.000 0.00 0.00 0.00 3.67
9519 13306 1.169661 TTGTCCATGTCCGCAACCAC 61.170 55.000 0.00 0.00 0.00 4.16
9520 13307 1.599518 GTCCATGTCCGCAACCACA 60.600 57.895 0.00 0.00 0.00 4.17
9521 13308 1.599518 TCCATGTCCGCAACCACAC 60.600 57.895 0.00 0.00 0.00 3.82
9522 13309 2.625823 CCATGTCCGCAACCACACC 61.626 63.158 0.00 0.00 0.00 4.16
9523 13310 1.896183 CATGTCCGCAACCACACCA 60.896 57.895 0.00 0.00 0.00 4.17
9524 13311 1.896660 ATGTCCGCAACCACACCAC 60.897 57.895 0.00 0.00 0.00 4.16
9525 13312 3.284449 GTCCGCAACCACACCACC 61.284 66.667 0.00 0.00 0.00 4.61
9528 13315 2.597217 CGCAACCACACCACCCAT 60.597 61.111 0.00 0.00 0.00 4.00
9555 13342 3.188159 ACCATCAATTCCATGCAATGC 57.812 42.857 0.00 0.00 44.97 3.56
9556 13343 2.502130 ACCATCAATTCCATGCAATGCA 59.498 40.909 11.44 11.44 44.97 3.96
9576 13366 1.014352 GCGGCCGTCATACAAAGATT 58.986 50.000 28.70 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.988145 CCTGGATTAGGGGGTGCTCA 60.988 60.000 0.00 0.00 43.33 4.26
86 87 3.499737 CAGGCGGCAATCGTGGAC 61.500 66.667 13.08 0.00 41.72 4.02
97 99 1.881252 CGGTCGTTTATCCAGGCGG 60.881 63.158 0.00 0.00 0.00 6.13
147 149 1.280746 CTCGTGTTGTTGCTGCCTG 59.719 57.895 0.00 0.00 0.00 4.85
174 176 2.275089 CCGGTGATGGGAATGGCA 59.725 61.111 0.00 0.00 0.00 4.92
273 279 3.154473 CGATTGAGGGCGAGGGGA 61.154 66.667 0.00 0.00 0.00 4.81
274 280 4.918201 GCGATTGAGGGCGAGGGG 62.918 72.222 0.00 0.00 0.00 4.79
278 284 4.161295 CAGGGCGATTGAGGGCGA 62.161 66.667 0.00 0.00 0.00 5.54
306 325 0.043637 TCCCCATAACCCCTCGAGTT 59.956 55.000 12.31 2.54 0.00 3.01
307 326 0.690077 GTCCCCATAACCCCTCGAGT 60.690 60.000 12.31 0.00 0.00 4.18
311 330 0.398098 TCGAGTCCCCATAACCCCTC 60.398 60.000 0.00 0.00 0.00 4.30
320 339 1.685765 CCCATGAGTCGAGTCCCCA 60.686 63.158 17.48 0.00 0.00 4.96
375 395 6.591935 ACGATGGTCCATATTAGTGTTGAAT 58.408 36.000 3.72 0.00 0.00 2.57
392 412 3.134081 CCAGTTCCCTACATAACGATGGT 59.866 47.826 0.00 0.00 37.39 3.55
410 430 3.428532 AGAAGCATTTCAAGCATCCAGT 58.571 40.909 0.00 0.00 35.70 4.00
435 455 6.836242 ACCCACACATTTGGTATTTTTCATT 58.164 32.000 0.00 0.00 34.44 2.57
442 462 5.598005 CCATATGACCCACACATTTGGTATT 59.402 40.000 3.65 0.00 39.87 1.89
544 565 8.689972 CCTCTGCCTTCTTATACAAAATGAAAT 58.310 33.333 0.00 0.00 0.00 2.17
552 573 4.101114 TCCACCTCTGCCTTCTTATACAA 58.899 43.478 0.00 0.00 0.00 2.41
558 579 1.846712 GCCTCCACCTCTGCCTTCTT 61.847 60.000 0.00 0.00 0.00 2.52
564 585 2.352032 ACTACGCCTCCACCTCTGC 61.352 63.158 0.00 0.00 0.00 4.26
586 608 5.692814 CCATAAATCTCGTGCATGTATTGG 58.307 41.667 5.68 3.00 0.00 3.16
620 642 0.036388 AGGTAACGGTGATGCACTGG 60.036 55.000 10.76 0.55 44.25 4.00
624 646 2.829720 ACTAAGAGGTAACGGTGATGCA 59.170 45.455 0.00 0.00 46.39 3.96
902 1134 7.097834 CCCTTTACCAGAGTAGTAACTTTCAG 58.902 42.308 0.00 0.00 35.56 3.02
940 1177 4.236147 GGAAGAGAGAGGTCGTGTAAAAC 58.764 47.826 0.00 0.00 0.00 2.43
1180 1417 3.256383 TGCATCAATCAAGAAACCCACAG 59.744 43.478 0.00 0.00 0.00 3.66
1510 1747 5.028549 ACACGAAGATTGGAATCTGCTAT 57.971 39.130 2.62 0.00 44.67 2.97
1546 1783 2.380084 TTCTCCGACAAAATCCCTCG 57.620 50.000 0.00 0.00 0.00 4.63
1593 1834 7.229506 CCTTCTAACCTAAATTGGCCATTCTAG 59.770 40.741 6.09 3.25 0.00 2.43
1648 1889 4.042062 TGTGGACTGAATCTCAACTGGAAT 59.958 41.667 0.00 0.00 0.00 3.01
1652 1893 5.954296 AATTGTGGACTGAATCTCAACTG 57.046 39.130 0.00 0.00 0.00 3.16
1962 2203 2.808543 GTTGCCCTGAATCGACCATATC 59.191 50.000 0.00 0.00 0.00 1.63
1963 2204 2.439507 AGTTGCCCTGAATCGACCATAT 59.560 45.455 0.00 0.00 0.00 1.78
1964 2205 1.837439 AGTTGCCCTGAATCGACCATA 59.163 47.619 0.00 0.00 0.00 2.74
1965 2206 0.620556 AGTTGCCCTGAATCGACCAT 59.379 50.000 0.00 0.00 0.00 3.55
1966 2207 0.036388 GAGTTGCCCTGAATCGACCA 60.036 55.000 0.00 0.00 0.00 4.02
1967 2208 0.744771 GGAGTTGCCCTGAATCGACC 60.745 60.000 0.00 0.00 0.00 4.79
2012 2253 4.067016 CAAACGAACGCGGACGGG 62.067 66.667 25.03 7.24 46.04 5.28
2063 2306 2.228582 CGGACATTGGTTCATTTGCTCA 59.771 45.455 0.00 0.00 0.00 4.26
2095 2338 1.298667 CCGGGAATGGGTCGAAAGT 59.701 57.895 0.00 0.00 0.00 2.66
2174 2418 3.264845 GGGCCAGGGGGAGAACAA 61.265 66.667 4.39 0.00 35.59 2.83
2282 2565 3.998672 GGTGGAAGGCGACACGGA 61.999 66.667 0.00 0.00 38.46 4.69
2286 2569 2.429930 CCTTGGTGGAAGGCGACA 59.570 61.111 0.00 0.00 45.17 4.35
2352 2635 1.211709 CGGCAAAAAGCTTACCGGG 59.788 57.895 17.62 0.00 44.79 5.73
2395 2679 1.226717 GGCCGTAGCTTCTCTCACG 60.227 63.158 0.00 0.00 39.73 4.35
2430 2714 2.058829 CTGCCGGAAGTTGTTGCGTT 62.059 55.000 5.05 0.00 45.33 4.84
2433 2717 2.644992 CCTGCCGGAAGTTGTTGC 59.355 61.111 9.15 0.00 0.00 4.17
2451 2737 4.824166 CTCTGCCGCAATGCACGC 62.824 66.667 5.91 6.69 36.04 5.34
2478 2769 2.511900 GTTTGGGGTCGGTGGTGA 59.488 61.111 0.00 0.00 0.00 4.02
2727 3019 1.457604 CATGGCCGGGGATTGATCT 59.542 57.895 2.18 0.00 0.00 2.75
2760 3052 0.258774 TGGCCTTTCTCCCTATTGCC 59.741 55.000 3.32 0.00 37.90 4.52
2813 3105 2.929641 TGATGTGGTTTGAAGAGTGCA 58.070 42.857 0.00 0.00 0.00 4.57
3031 3336 3.218453 AGGAGACATATGGACTCACTCG 58.782 50.000 23.57 0.00 33.00 4.18
3117 3423 1.537776 CCTCTCTGTATCAGCGGCAAG 60.538 57.143 1.45 0.00 0.00 4.01
3238 3547 2.233676 CCTTTCAAATGCCCCTTGTACC 59.766 50.000 0.00 0.00 0.00 3.34
3252 3564 5.435686 AGTATGATAGTGGCACCTTTCAA 57.564 39.130 15.27 3.99 0.00 2.69
3569 3883 3.059597 CGAGATTGAAGCACACGAAAAGT 60.060 43.478 0.00 0.00 0.00 2.66
3575 3889 1.325640 CCATCGAGATTGAAGCACACG 59.674 52.381 0.00 0.00 0.00 4.49
3596 3910 1.001068 TGCAGGGTTTCGAACGATACA 59.999 47.619 16.36 0.00 0.00 2.29
3905 4233 9.103861 TCTTACAACCCAATCAAAATTTGTTTC 57.896 29.630 5.56 0.00 0.00 2.78
3937 4266 8.082334 ACCCAATTGAAACAAAAACAATATCG 57.918 30.769 7.12 0.00 34.48 2.92
4203 4583 0.770499 TGGATTGTTGTGGGCTCTCA 59.230 50.000 0.00 0.00 0.00 3.27
4234 4614 0.704076 TGACCAATGGGGAAAGGAGG 59.296 55.000 3.55 0.00 41.15 4.30
4318 4698 1.080093 CCTTAGAGCCACAACGCGA 60.080 57.895 15.93 0.00 0.00 5.87
4326 4706 0.687757 ATCTCGTGCCCTTAGAGCCA 60.688 55.000 0.00 0.00 32.42 4.75
4334 4714 3.008049 ACAGTAAAAGAATCTCGTGCCCT 59.992 43.478 0.00 0.00 0.00 5.19
4366 4746 3.125316 GCTGTCTTTTCCTTGTCCATACG 59.875 47.826 0.00 0.00 0.00 3.06
4391 4771 3.075005 TTTCCCCTCTCCGCCTCG 61.075 66.667 0.00 0.00 0.00 4.63
4461 4844 0.826672 ACGTCGAACTCCCCTCAAGT 60.827 55.000 0.00 0.00 0.00 3.16
4474 4857 1.007038 CAACCGGGAAAGACGTCGA 60.007 57.895 10.46 0.00 0.00 4.20
4476 4859 3.961729 CCAACCGGGAAAGACGTC 58.038 61.111 7.70 7.70 40.01 4.34
4514 4897 4.124351 CCGCCGTTCCTAGACGCA 62.124 66.667 0.00 0.00 41.50 5.24
4732 5117 5.606505 TGCTATCATGTATCTTTGCCGTTA 58.393 37.500 0.00 0.00 0.00 3.18
4833 5219 4.395231 CACTACCTCGTCTTAGTCACATCA 59.605 45.833 0.00 0.00 0.00 3.07
4838 5224 2.089980 GCCACTACCTCGTCTTAGTCA 58.910 52.381 0.00 0.00 0.00 3.41
4862 5248 0.609957 TGGCAATCCTTCTGCAGTGG 60.610 55.000 14.67 16.76 41.78 4.00
4863 5249 0.524862 GTGGCAATCCTTCTGCAGTG 59.475 55.000 14.67 8.01 41.78 3.66
4864 5250 0.957395 CGTGGCAATCCTTCTGCAGT 60.957 55.000 14.67 0.00 41.78 4.40
4871 5257 2.436646 CGGAGCGTGGCAATCCTT 60.437 61.111 11.53 0.00 0.00 3.36
5258 5668 4.335416 CAGGTGAAAGCCCAAAATCTCTA 58.665 43.478 0.00 0.00 32.25 2.43
5284 5694 1.081092 CCTCACCCTCTCCTTCCCA 59.919 63.158 0.00 0.00 0.00 4.37
5414 5826 4.028490 CTAGCGGTTGGTGGGGCA 62.028 66.667 0.00 0.00 0.00 5.36
5462 5887 1.284313 CCCTCCCTTGAGCTTCTTCT 58.716 55.000 0.00 0.00 37.29 2.85
5940 8034 6.315891 ACAACAACCAAAAATCAGACAATTGG 59.684 34.615 10.83 7.93 44.75 3.16
5984 8078 2.485426 CAGCTGACCATTACCACACAAG 59.515 50.000 8.42 0.00 0.00 3.16
6057 8151 2.362503 GTTTGGCAGCCCCCTACC 60.363 66.667 9.64 0.00 0.00 3.18
6252 8374 4.978099 ACATACCATGCTCTAAATCCCAG 58.022 43.478 0.00 0.00 0.00 4.45
6388 8510 5.748402 TCTTTTGCACATCTATGACCTCAT 58.252 37.500 0.00 0.00 40.22 2.90
6458 8580 7.756395 ACATTCATGACAGAAAAACATCTCT 57.244 32.000 0.00 0.00 0.00 3.10
6678 8800 3.893326 AAGCCATCCAAAATTACAGCC 57.107 42.857 0.00 0.00 0.00 4.85
6811 8947 1.198178 CAAAAATGGCATGGCAGCAAC 59.802 47.619 27.02 0.00 35.83 4.17
6850 8990 6.994496 TCAGTTCCCAAGCATATATCTTTGAG 59.006 38.462 7.11 0.00 0.00 3.02
6890 9032 6.042781 TGGTTGAGGTAGTTAATGACTCAAGT 59.957 38.462 12.24 0.00 45.53 3.16
7013 9155 3.885901 GCAAAAAGGGAACAGAGAAGTCT 59.114 43.478 0.00 0.00 0.00 3.24
7075 9217 7.771361 TCCATACTTCCATGCTAAACGAAATTA 59.229 33.333 0.00 0.00 0.00 1.40
7095 9237 6.253727 CGACACTCTTTGTATCAGTTCCATAC 59.746 42.308 0.00 0.00 39.17 2.39
7234 9376 2.069273 CGTCCAGTTTTCTGCTAGGTG 58.931 52.381 0.00 0.00 45.76 4.00
7337 9496 4.891627 TTTTGCAGTTTGATGAGTTCGA 57.108 36.364 0.00 0.00 0.00 3.71
7692 10977 7.175641 CCTTCTTGTTCCTAATCTTGTTGACAT 59.824 37.037 0.00 0.00 0.00 3.06
7693 10978 6.486657 CCTTCTTGTTCCTAATCTTGTTGACA 59.513 38.462 0.00 0.00 0.00 3.58
8130 11419 1.168407 TGCCAGAGTGCAAGTTGAGC 61.168 55.000 7.16 0.00 38.56 4.26
8298 11589 5.634896 ACGTATCTTTTTACTCGTGATCGT 58.365 37.500 0.00 0.00 38.33 3.73
8442 11744 9.851686 TGCTAATATGGACAGAAGTATGAAAAT 57.148 29.630 0.00 0.00 0.00 1.82
8446 11748 7.603180 ACTGCTAATATGGACAGAAGTATGA 57.397 36.000 6.22 0.00 34.25 2.15
8456 11758 3.983741 AGCTCGAACTGCTAATATGGAC 58.016 45.455 0.00 0.00 39.21 4.02
8485 11787 2.100605 AAAGAGAGTTGCGGACATCC 57.899 50.000 0.00 0.00 0.00 3.51
8684 11987 8.918202 ATAAACTAGGTCAAGTTTTCATGACA 57.082 30.769 7.24 0.00 45.20 3.58
8757 12060 0.890683 CCTGCTAGGCACAAAAAGGG 59.109 55.000 0.00 0.00 33.79 3.95
8827 12130 1.591594 GTGCGCCGAAGCTGCTATA 60.592 57.895 4.18 0.00 38.68 1.31
8841 12145 2.873170 TAATCAACGAAGCTTGTGCG 57.127 45.000 2.10 3.68 45.42 5.34
8866 12170 6.402222 AGAACACTAGGACAAACAGATCATC 58.598 40.000 0.00 0.00 0.00 2.92
8877 12181 4.445735 CCAAGGGAAAAGAACACTAGGACA 60.446 45.833 0.00 0.00 0.00 4.02
8879 12183 3.497942 GCCAAGGGAAAAGAACACTAGGA 60.498 47.826 0.00 0.00 0.00 2.94
8880 12184 2.820197 GCCAAGGGAAAAGAACACTAGG 59.180 50.000 0.00 0.00 0.00 3.02
8881 12185 3.486383 TGCCAAGGGAAAAGAACACTAG 58.514 45.455 0.00 0.00 0.00 2.57
8882 12186 3.586470 TGCCAAGGGAAAAGAACACTA 57.414 42.857 0.00 0.00 0.00 2.74
8883 12187 2.452600 TGCCAAGGGAAAAGAACACT 57.547 45.000 0.00 0.00 0.00 3.55
8884 12188 2.430694 ACTTGCCAAGGGAAAAGAACAC 59.569 45.455 9.64 0.00 0.00 3.32
8885 12189 2.693074 GACTTGCCAAGGGAAAAGAACA 59.307 45.455 9.64 0.00 0.00 3.18
8886 12190 2.693074 TGACTTGCCAAGGGAAAAGAAC 59.307 45.455 9.64 1.65 0.00 3.01
8887 12191 3.025322 TGACTTGCCAAGGGAAAAGAA 57.975 42.857 9.64 0.00 0.00 2.52
8888 12192 2.746279 TGACTTGCCAAGGGAAAAGA 57.254 45.000 9.64 0.00 0.00 2.52
8889 12193 4.341366 AAATGACTTGCCAAGGGAAAAG 57.659 40.909 9.64 0.00 0.00 2.27
8890 12194 5.365314 AGTTAAATGACTTGCCAAGGGAAAA 59.635 36.000 9.64 0.00 0.00 2.29
8891 12195 4.898861 AGTTAAATGACTTGCCAAGGGAAA 59.101 37.500 9.64 0.00 0.00 3.13
8892 12196 4.479158 AGTTAAATGACTTGCCAAGGGAA 58.521 39.130 9.64 0.00 0.00 3.97
8893 12197 4.112634 AGTTAAATGACTTGCCAAGGGA 57.887 40.909 9.64 0.00 0.00 4.20
8894 12198 4.871933 AAGTTAAATGACTTGCCAAGGG 57.128 40.909 9.64 0.00 38.39 3.95
8895 12199 6.089249 AGAAAGTTAAATGACTTGCCAAGG 57.911 37.500 9.64 0.00 39.68 3.61
8896 12200 8.134895 TGTTAGAAAGTTAAATGACTTGCCAAG 58.865 33.333 2.11 2.11 39.68 3.61
8897 12201 8.001881 TGTTAGAAAGTTAAATGACTTGCCAA 57.998 30.769 0.00 0.00 39.68 4.52
8898 12202 7.575414 TGTTAGAAAGTTAAATGACTTGCCA 57.425 32.000 0.00 0.00 39.68 4.92
8899 12203 7.918562 TGTTGTTAGAAAGTTAAATGACTTGCC 59.081 33.333 0.00 0.00 39.68 4.52
8900 12204 8.850454 TGTTGTTAGAAAGTTAAATGACTTGC 57.150 30.769 0.00 0.00 39.68 4.01
8908 12212 9.440784 CGCATTAACTGTTGTTAGAAAGTTAAA 57.559 29.630 2.69 0.00 44.11 1.52
8909 12213 8.614346 ACGCATTAACTGTTGTTAGAAAGTTAA 58.386 29.630 2.69 8.74 44.67 2.01
8910 12214 8.065407 CACGCATTAACTGTTGTTAGAAAGTTA 58.935 33.333 2.69 0.00 39.49 2.24
8911 12215 6.910433 CACGCATTAACTGTTGTTAGAAAGTT 59.090 34.615 2.69 0.00 39.49 2.66
8912 12216 6.427150 CACGCATTAACTGTTGTTAGAAAGT 58.573 36.000 2.69 0.00 39.49 2.66
8913 12217 5.851177 CCACGCATTAACTGTTGTTAGAAAG 59.149 40.000 2.69 0.00 39.49 2.62
8914 12218 5.527951 TCCACGCATTAACTGTTGTTAGAAA 59.472 36.000 2.69 0.00 39.49 2.52
8915 12219 5.049954 GTCCACGCATTAACTGTTGTTAGAA 60.050 40.000 2.69 0.00 39.49 2.10
8916 12220 4.449743 GTCCACGCATTAACTGTTGTTAGA 59.550 41.667 2.69 0.00 39.49 2.10
8917 12221 4.665645 CGTCCACGCATTAACTGTTGTTAG 60.666 45.833 2.69 0.00 39.49 2.34
8918 12222 3.184783 CGTCCACGCATTAACTGTTGTTA 59.815 43.478 2.69 0.00 37.59 2.41
8919 12223 2.032377 CGTCCACGCATTAACTGTTGTT 60.032 45.455 2.69 0.00 39.98 2.83
8920 12224 1.529438 CGTCCACGCATTAACTGTTGT 59.471 47.619 2.69 0.00 0.00 3.32
8921 12225 1.795872 TCGTCCACGCATTAACTGTTG 59.204 47.619 2.69 0.00 39.60 3.33
8922 12226 2.066262 CTCGTCCACGCATTAACTGTT 58.934 47.619 0.00 0.00 39.60 3.16
8923 12227 1.000506 ACTCGTCCACGCATTAACTGT 59.999 47.619 0.00 0.00 39.60 3.55
8924 12228 1.390123 CACTCGTCCACGCATTAACTG 59.610 52.381 0.00 0.00 39.60 3.16
8925 12229 1.271379 TCACTCGTCCACGCATTAACT 59.729 47.619 0.00 0.00 39.60 2.24
8926 12230 1.705256 TCACTCGTCCACGCATTAAC 58.295 50.000 0.00 0.00 39.60 2.01
8927 12231 2.267426 CATCACTCGTCCACGCATTAA 58.733 47.619 0.00 0.00 39.60 1.40
8928 12232 1.921243 CATCACTCGTCCACGCATTA 58.079 50.000 0.00 0.00 39.60 1.90
8929 12233 1.361668 GCATCACTCGTCCACGCATT 61.362 55.000 0.00 0.00 39.60 3.56
8930 12234 1.811266 GCATCACTCGTCCACGCAT 60.811 57.895 0.00 0.00 39.60 4.73
8931 12235 2.432456 GCATCACTCGTCCACGCA 60.432 61.111 0.00 0.00 39.60 5.24
8932 12236 2.125912 AGCATCACTCGTCCACGC 60.126 61.111 0.00 0.00 39.60 5.34
8933 12237 4.079090 GAGCATCACTCGTCCACG 57.921 61.111 0.00 0.00 35.18 4.94
9029 12673 9.416794 AGTATCGATAATCTTGCTACTGATTTG 57.583 33.333 6.72 0.00 35.01 2.32
9073 12720 3.703052 TCAGCTCTCAGCATTATGTCAGA 59.297 43.478 0.00 0.00 45.56 3.27
9107 12754 4.589216 AAGTAGCAAATGCAGCTTGAAA 57.411 36.364 13.96 0.20 45.16 2.69
9146 12793 8.898792 CACAGACGAAATATATCATGCATTTTG 58.101 33.333 0.00 0.00 0.00 2.44
9150 12797 8.557592 AATCACAGACGAAATATATCATGCAT 57.442 30.769 0.00 0.00 0.00 3.96
9151 12798 7.967890 AATCACAGACGAAATATATCATGCA 57.032 32.000 0.00 0.00 0.00 3.96
9152 12799 9.964253 CTAAATCACAGACGAAATATATCATGC 57.036 33.333 0.00 0.00 0.00 4.06
9160 12914 7.602644 AGCAGTTTCTAAATCACAGACGAAATA 59.397 33.333 0.00 0.00 0.00 1.40
9182 12936 3.190744 TGTTCCGAACTCTGTAGTAGCAG 59.809 47.826 12.43 0.00 33.75 4.24
9188 12942 7.133513 GTGACTATATGTTCCGAACTCTGTAG 58.866 42.308 12.43 12.42 0.00 2.74
9233 12987 1.678101 GAGGGGGCTCATTCAAAATCG 59.322 52.381 0.00 0.00 0.00 3.34
9235 12989 1.343377 GGGAGGGGGCTCATTCAAAAT 60.343 52.381 0.00 0.00 0.00 1.82
9245 12999 4.767892 CTCAAGGGGGAGGGGGCT 62.768 72.222 0.00 0.00 0.00 5.19
9288 13042 2.683933 TTCCTCCTCTGGCGTCCC 60.684 66.667 0.00 0.00 0.00 4.46
9315 13099 1.731324 AATCCCCAAACCCGAACCCA 61.731 55.000 0.00 0.00 0.00 4.51
9316 13100 0.332293 TAATCCCCAAACCCGAACCC 59.668 55.000 0.00 0.00 0.00 4.11
9317 13101 1.683938 CCTAATCCCCAAACCCGAACC 60.684 57.143 0.00 0.00 0.00 3.62
9318 13102 1.282738 TCCTAATCCCCAAACCCGAAC 59.717 52.381 0.00 0.00 0.00 3.95
9319 13103 1.671293 TCCTAATCCCCAAACCCGAA 58.329 50.000 0.00 0.00 0.00 4.30
9320 13104 1.901648 ATCCTAATCCCCAAACCCGA 58.098 50.000 0.00 0.00 0.00 5.14
9342 13126 3.491792 GGTTTATCTTCCTCCTCGAGCTG 60.492 52.174 6.99 1.13 0.00 4.24
9347 13131 6.759497 AATTTTGGTTTATCTTCCTCCTCG 57.241 37.500 0.00 0.00 0.00 4.63
9392 13176 5.348164 CGTTGGATTCTTGGAAACTTTTGT 58.652 37.500 0.00 0.00 0.00 2.83
9395 13179 3.243737 GCCGTTGGATTCTTGGAAACTTT 60.244 43.478 0.00 0.00 0.00 2.66
9412 13196 3.065648 TGCTTTAAAAGAACTTCGCCGTT 59.934 39.130 0.00 0.00 0.00 4.44
9430 13214 3.920231 TCATTGAGGCTGTAGATGCTT 57.080 42.857 0.00 0.00 0.00 3.91
9436 13220 5.645067 TCAGATTTGTTCATTGAGGCTGTAG 59.355 40.000 0.00 0.00 0.00 2.74
9437 13221 5.412594 GTCAGATTTGTTCATTGAGGCTGTA 59.587 40.000 0.00 0.00 0.00 2.74
9438 13222 4.217118 GTCAGATTTGTTCATTGAGGCTGT 59.783 41.667 0.00 0.00 0.00 4.40
9440 13224 3.760684 GGTCAGATTTGTTCATTGAGGCT 59.239 43.478 0.00 0.00 0.00 4.58
9445 13229 7.503566 ACATATAGGGGTCAGATTTGTTCATTG 59.496 37.037 0.00 0.00 0.00 2.82
9446 13230 7.586349 ACATATAGGGGTCAGATTTGTTCATT 58.414 34.615 0.00 0.00 0.00 2.57
9505 13292 1.896183 TGGTGTGGTTGCGGACATG 60.896 57.895 0.00 0.00 0.00 3.21
9506 13293 1.896660 GTGGTGTGGTTGCGGACAT 60.897 57.895 0.00 0.00 0.00 3.06
9533 13320 4.161754 TGCATTGCATGGAATTGATGGTTA 59.838 37.500 10.07 0.00 31.71 2.85
9553 13340 3.597675 TTGTATGACGGCCGCTGCA 62.598 57.895 28.58 21.64 40.13 4.41
9555 13342 0.739462 TCTTTGTATGACGGCCGCTG 60.739 55.000 28.58 0.00 0.00 5.18
9556 13343 0.178068 ATCTTTGTATGACGGCCGCT 59.822 50.000 28.58 13.18 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.