Multiple sequence alignment - TraesCS3D01G267500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G267500 chr3D 100.000 4776 0 0 1 4776 371369381 371364606 0.000000e+00 8820.0
1 TraesCS3D01G267500 chr3D 96.296 216 6 2 592 806 610892979 610893193 2.110000e-93 353.0
2 TraesCS3D01G267500 chr3D 90.909 242 20 2 1 242 482259577 482259338 1.660000e-84 324.0
3 TraesCS3D01G267500 chr3D 88.843 242 25 1 1 242 39619398 39619637 3.610000e-76 296.0
4 TraesCS3D01G267500 chr3D 89.076 238 23 3 1 237 39617092 39617327 4.680000e-75 292.0
5 TraesCS3D01G267500 chr3D 88.477 243 26 2 1 242 39618140 39618381 4.680000e-75 292.0
6 TraesCS3D01G267500 chr3D 91.139 158 14 0 2342 2499 84502037 84502194 1.040000e-51 215.0
7 TraesCS3D01G267500 chr3D 93.617 47 3 0 502 548 127332849 127332803 2.380000e-08 71.3
8 TraesCS3D01G267500 chr3B 92.273 1553 93 14 795 2344 482416280 482414752 0.000000e+00 2178.0
9 TraesCS3D01G267500 chr3B 97.417 271 6 1 324 593 482419530 482419260 1.210000e-125 460.0
10 TraesCS3D01G267500 chr3B 91.556 225 15 4 583 806 696974802 696974581 1.670000e-79 307.0
11 TraesCS3D01G267500 chr3B 92.391 184 14 0 2557 2740 482414750 482414567 3.670000e-66 263.0
12 TraesCS3D01G267500 chr3B 93.220 177 12 0 2808 2984 482408884 482408708 1.320000e-65 261.0
13 TraesCS3D01G267500 chr3A 91.153 1492 87 15 863 2346 492202186 492200732 0.000000e+00 1982.0
14 TraesCS3D01G267500 chr3A 89.431 1107 52 31 2808 3893 492197030 492195968 0.000000e+00 1336.0
15 TraesCS3D01G267500 chr3A 91.312 587 37 6 4192 4776 543015522 543014948 0.000000e+00 789.0
16 TraesCS3D01G267500 chr3A 94.249 313 16 2 243 553 492204593 492204281 1.200000e-130 477.0
17 TraesCS3D01G267500 chr3A 89.796 245 15 3 2556 2800 492200733 492200499 6.000000e-79 305.0
18 TraesCS3D01G267500 chr3A 87.671 219 12 10 3933 4151 492195967 492195764 1.720000e-59 241.0
19 TraesCS3D01G267500 chr3A 92.308 91 7 0 2467 2557 555335959 555335869 3.880000e-26 130.0
20 TraesCS3D01G267500 chr3A 92.754 69 4 1 795 863 492203227 492203160 1.090000e-16 99.0
21 TraesCS3D01G267500 chr4B 96.954 591 18 0 4186 4776 454989107 454988517 0.000000e+00 992.0
22 TraesCS3D01G267500 chr4B 86.408 206 24 4 2348 2551 464158277 464158480 6.220000e-54 222.0
23 TraesCS3D01G267500 chr4B 90.566 53 4 1 502 554 4405410 4405359 8.580000e-08 69.4
24 TraesCS3D01G267500 chr4B 90.566 53 4 1 502 554 4438718 4438667 8.580000e-08 69.4
25 TraesCS3D01G267500 chr4B 90.566 53 4 1 502 554 4473271 4473220 8.580000e-08 69.4
26 TraesCS3D01G267500 chr4B 91.667 48 4 0 502 549 4446378 4446331 3.080000e-07 67.6
27 TraesCS3D01G267500 chr5D 91.597 238 15 5 1 237 190052456 190052689 1.660000e-84 324.0
28 TraesCS3D01G267500 chr5D 92.958 213 13 2 596 807 229552569 229552358 4.640000e-80 309.0
29 TraesCS3D01G267500 chr5D 87.190 242 30 1 1 242 521085561 521085801 1.690000e-69 274.0
30 TraesCS3D01G267500 chr5D 92.857 154 8 2 2342 2493 175786654 175786806 2.240000e-53 220.0
31 TraesCS3D01G267500 chr5D 90.588 85 8 0 2474 2558 395728127 395728043 3.910000e-21 113.0
32 TraesCS3D01G267500 chr6A 92.694 219 14 2 590 807 606228651 606228868 9.980000e-82 315.0
33 TraesCS3D01G267500 chr6A 89.256 242 25 1 1 242 74978988 74978748 7.770000e-78 302.0
34 TraesCS3D01G267500 chr6A 92.000 150 12 0 2348 2497 602454242 602454093 1.350000e-50 211.0
35 TraesCS3D01G267500 chr1D 93.839 211 8 3 595 804 475818205 475818411 3.590000e-81 313.0
36 TraesCS3D01G267500 chr7A 92.593 216 14 2 590 804 39211258 39211044 4.640000e-80 309.0
37 TraesCS3D01G267500 chr7D 93.333 210 11 3 596 804 599589148 599589355 1.670000e-79 307.0
38 TraesCS3D01G267500 chr7D 91.121 214 19 0 2348 2561 234351369 234351156 1.680000e-74 291.0
39 TraesCS3D01G267500 chr7D 95.775 142 6 0 2358 2499 266214245 266214386 3.720000e-56 230.0
40 TraesCS3D01G267500 chr7D 93.289 149 10 0 2345 2493 436663612 436663760 2.240000e-53 220.0
41 TraesCS3D01G267500 chr7D 93.976 83 3 2 2492 2574 498229903 498229823 1.800000e-24 124.0
42 TraesCS3D01G267500 chr7D 89.773 88 6 1 2474 2558 184494108 184494195 5.050000e-20 110.0
43 TraesCS3D01G267500 chr7D 92.157 51 2 1 501 549 117677347 117677397 2.380000e-08 71.3
44 TraesCS3D01G267500 chr6B 92.925 212 11 4 596 805 682314348 682314557 6.000000e-79 305.0
45 TraesCS3D01G267500 chrUn 92.130 216 15 2 592 806 108498972 108498758 2.160000e-78 303.0
46 TraesCS3D01G267500 chrUn 93.377 151 10 0 2347 2497 87983111 87983261 1.730000e-54 224.0
47 TraesCS3D01G267500 chr4D 86.561 253 30 3 1 253 485406917 485407165 4.710000e-70 276.0
48 TraesCS3D01G267500 chr1A 87.603 242 25 4 1 242 429980776 429980540 4.710000e-70 276.0
49 TraesCS3D01G267500 chr1B 88.596 228 18 4 2335 2558 471753543 471753766 2.190000e-68 270.0
50 TraesCS3D01G267500 chr4A 92.258 155 11 1 2343 2497 556761606 556761759 8.050000e-53 219.0
51 TraesCS3D01G267500 chr2A 92.683 82 6 0 2476 2557 238012907 238012826 8.400000e-23 119.0
52 TraesCS3D01G267500 chr2D 91.837 49 4 0 501 549 544854512 544854560 8.580000e-08 69.4
53 TraesCS3D01G267500 chr7B 100.000 31 0 0 2348 2378 5513090 5513060 1.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G267500 chr3D 371364606 371369381 4775 True 8820.000000 8820 100.000000 1 4776 1 chr3D.!!$R2 4775
1 TraesCS3D01G267500 chr3D 39617092 39619637 2545 False 293.333333 296 88.798667 1 242 3 chr3D.!!$F3 241
2 TraesCS3D01G267500 chr3B 482414567 482419530 4963 True 967.000000 2178 94.027000 324 2740 3 chr3B.!!$R3 2416
3 TraesCS3D01G267500 chr3A 543014948 543015522 574 True 789.000000 789 91.312000 4192 4776 1 chr3A.!!$R1 584
4 TraesCS3D01G267500 chr3A 492195764 492204593 8829 True 740.000000 1982 90.842333 243 4151 6 chr3A.!!$R3 3908
5 TraesCS3D01G267500 chr4B 454988517 454989107 590 True 992.000000 992 96.954000 4186 4776 1 chr4B.!!$R5 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 614 0.469892 AGGGCCAGTTCTTTTGGTGG 60.470 55.0 6.18 0.0 38.02 4.61 F
641 643 0.763223 TAAGCTGCCCCCTACCTAGC 60.763 60.0 0.00 0.0 34.71 3.42 F
1797 6431 0.904865 TCGATTGCCACCTCCTGACT 60.905 55.0 0.00 0.0 0.00 3.41 F
3573 12744 0.447406 TGCAATCTCAATGCGTTCCG 59.553 50.0 0.00 0.0 46.76 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 7372 0.655733 ACAACTCCAGCGAAACGTTG 59.344 50.000 0.00 0.00 40.41 4.10 R
2367 7571 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85 R
3592 12763 0.240945 CCAACAATCACCTTCCGTGC 59.759 55.000 0.00 0.00 42.69 5.34 R
4656 13831 1.344114 TCACCCAGGCAAAAGAATTGC 59.656 47.619 4.64 4.64 44.22 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.683069 AAGACAAAATCAACATTGACACTATTC 57.317 29.630 0.00 0.00 40.49 1.75
53 54 9.630098 GACAAAATCAACATTGACACTATTCAT 57.370 29.630 0.00 0.00 40.49 2.57
104 105 5.471556 TGTACATTTCGAGTTTGGACCTA 57.528 39.130 0.00 0.00 0.00 3.08
117 118 6.253758 AGTTTGGACCTAAAATTTCTAGGGG 58.746 40.000 20.84 10.32 40.37 4.79
119 120 5.871324 TGGACCTAAAATTTCTAGGGGTT 57.129 39.130 20.84 8.44 40.37 4.11
131 132 5.836024 TTCTAGGGGTTGTAGTCACATTT 57.164 39.130 0.00 0.00 33.76 2.32
137 138 3.568007 GGGTTGTAGTCACATTTCTTGCA 59.432 43.478 0.00 0.00 33.76 4.08
144 145 7.264221 TGTAGTCACATTTCTTGCAAACATTT 58.736 30.769 0.00 0.00 0.00 2.32
148 149 6.036953 GTCACATTTCTTGCAAACATTTCCAA 59.963 34.615 0.00 0.00 0.00 3.53
206 207 4.985538 TTTTTAAACTTGAAGCACGGGA 57.014 36.364 0.00 0.00 0.00 5.14
212 213 1.270678 ACTTGAAGCACGGGAAGTACC 60.271 52.381 0.00 0.00 38.08 3.34
252 253 5.704515 CCAGATATTTTCCCAGCAGATGTAG 59.295 44.000 0.00 0.00 0.00 2.74
257 258 5.705609 TTTTCCCAGCAGATGTAGAAAAC 57.294 39.130 8.88 0.00 35.75 2.43
261 262 2.932614 CCAGCAGATGTAGAAAACGAGG 59.067 50.000 0.00 0.00 0.00 4.63
262 263 3.368427 CCAGCAGATGTAGAAAACGAGGA 60.368 47.826 0.00 0.00 0.00 3.71
304 305 3.117491 TGTGAGAGCAAGAGAAACTGG 57.883 47.619 0.00 0.00 0.00 4.00
312 313 2.548067 GCAAGAGAAACTGGTCGAGGAA 60.548 50.000 0.00 0.00 0.00 3.36
317 318 2.028020 AGAAACTGGTCGAGGAACATCC 60.028 50.000 0.00 0.00 36.58 3.51
318 319 1.348064 AACTGGTCGAGGAACATCCA 58.652 50.000 0.00 0.00 39.61 3.41
369 370 2.496817 GCTGCTCCAGTAGACCCG 59.503 66.667 0.00 0.00 33.43 5.28
592 594 2.504367 AGACAAACTGTAATGGCGCTT 58.496 42.857 7.64 0.00 0.00 4.68
594 596 3.684788 AGACAAACTGTAATGGCGCTTAG 59.315 43.478 7.64 0.00 0.00 2.18
596 598 2.038387 AACTGTAATGGCGCTTAGGG 57.962 50.000 7.64 0.00 0.00 3.53
605 607 1.377333 GCGCTTAGGGCCAGTTCTT 60.377 57.895 10.30 0.00 37.74 2.52
606 608 0.960861 GCGCTTAGGGCCAGTTCTTT 60.961 55.000 10.30 0.00 37.74 2.52
607 609 1.534729 CGCTTAGGGCCAGTTCTTTT 58.465 50.000 6.18 0.00 37.74 2.27
608 610 1.200020 CGCTTAGGGCCAGTTCTTTTG 59.800 52.381 6.18 0.00 37.74 2.44
609 611 1.546029 GCTTAGGGCCAGTTCTTTTGG 59.454 52.381 6.18 0.00 38.78 3.28
610 612 2.876581 CTTAGGGCCAGTTCTTTTGGT 58.123 47.619 6.18 0.00 38.02 3.67
611 613 2.286365 TAGGGCCAGTTCTTTTGGTG 57.714 50.000 6.18 0.00 38.02 4.17
612 614 0.469892 AGGGCCAGTTCTTTTGGTGG 60.470 55.000 6.18 0.00 38.02 4.61
616 618 2.800881 CCAGTTCTTTTGGTGGCTTC 57.199 50.000 0.00 0.00 0.00 3.86
617 619 2.310538 CCAGTTCTTTTGGTGGCTTCT 58.689 47.619 0.00 0.00 0.00 2.85
618 620 3.486383 CCAGTTCTTTTGGTGGCTTCTA 58.514 45.455 0.00 0.00 0.00 2.10
619 621 3.503748 CCAGTTCTTTTGGTGGCTTCTAG 59.496 47.826 0.00 0.00 0.00 2.43
620 622 4.389374 CAGTTCTTTTGGTGGCTTCTAGA 58.611 43.478 0.00 0.00 0.00 2.43
621 623 4.821805 CAGTTCTTTTGGTGGCTTCTAGAA 59.178 41.667 4.81 4.81 0.00 2.10
622 624 5.474876 CAGTTCTTTTGGTGGCTTCTAGAAT 59.525 40.000 5.44 0.00 0.00 2.40
623 625 6.655003 CAGTTCTTTTGGTGGCTTCTAGAATA 59.345 38.462 5.44 0.00 0.00 1.75
624 626 7.174946 CAGTTCTTTTGGTGGCTTCTAGAATAA 59.825 37.037 5.44 0.00 0.00 1.40
625 627 7.391833 AGTTCTTTTGGTGGCTTCTAGAATAAG 59.608 37.037 5.44 0.00 0.00 1.73
626 628 5.648092 TCTTTTGGTGGCTTCTAGAATAAGC 59.352 40.000 5.44 5.98 46.90 3.09
627 629 4.844349 TTGGTGGCTTCTAGAATAAGCT 57.156 40.909 13.28 0.00 46.81 3.74
628 630 4.142609 TGGTGGCTTCTAGAATAAGCTG 57.857 45.455 13.28 0.00 46.81 4.24
629 631 2.875317 GGTGGCTTCTAGAATAAGCTGC 59.125 50.000 13.28 8.77 46.81 5.25
630 632 2.875317 GTGGCTTCTAGAATAAGCTGCC 59.125 50.000 19.30 19.30 46.81 4.85
631 633 2.158755 TGGCTTCTAGAATAAGCTGCCC 60.159 50.000 21.85 9.72 46.81 5.36
632 634 2.499197 GCTTCTAGAATAAGCTGCCCC 58.501 52.381 5.44 0.00 44.75 5.80
633 635 2.812243 GCTTCTAGAATAAGCTGCCCCC 60.812 54.545 5.44 0.00 44.75 5.40
634 636 2.496679 TCTAGAATAAGCTGCCCCCT 57.503 50.000 0.00 0.00 0.00 4.79
635 637 3.630625 TCTAGAATAAGCTGCCCCCTA 57.369 47.619 0.00 0.00 0.00 3.53
636 638 3.240302 TCTAGAATAAGCTGCCCCCTAC 58.760 50.000 0.00 0.00 0.00 3.18
637 639 1.141185 AGAATAAGCTGCCCCCTACC 58.859 55.000 0.00 0.00 0.00 3.18
638 640 1.141185 GAATAAGCTGCCCCCTACCT 58.859 55.000 0.00 0.00 0.00 3.08
639 641 2.090153 AGAATAAGCTGCCCCCTACCTA 60.090 50.000 0.00 0.00 0.00 3.08
640 642 2.031495 ATAAGCTGCCCCCTACCTAG 57.969 55.000 0.00 0.00 0.00 3.02
641 643 0.763223 TAAGCTGCCCCCTACCTAGC 60.763 60.000 0.00 0.00 34.71 3.42
642 644 2.446802 GCTGCCCCCTACCTAGCT 60.447 66.667 0.00 0.00 0.00 3.32
643 645 2.073101 GCTGCCCCCTACCTAGCTT 61.073 63.158 0.00 0.00 0.00 3.74
644 646 0.763223 GCTGCCCCCTACCTAGCTTA 60.763 60.000 0.00 0.00 0.00 3.09
645 647 2.031495 CTGCCCCCTACCTAGCTTAT 57.969 55.000 0.00 0.00 0.00 1.73
646 648 2.339769 CTGCCCCCTACCTAGCTTATT 58.660 52.381 0.00 0.00 0.00 1.40
647 649 2.303311 CTGCCCCCTACCTAGCTTATTC 59.697 54.545 0.00 0.00 0.00 1.75
648 650 2.090153 TGCCCCCTACCTAGCTTATTCT 60.090 50.000 0.00 0.00 0.00 2.40
649 651 3.143359 TGCCCCCTACCTAGCTTATTCTA 59.857 47.826 0.00 0.00 0.00 2.10
650 652 4.165760 GCCCCCTACCTAGCTTATTCTAA 58.834 47.826 0.00 0.00 0.00 2.10
651 653 4.596212 GCCCCCTACCTAGCTTATTCTAAA 59.404 45.833 0.00 0.00 0.00 1.85
652 654 5.072736 GCCCCCTACCTAGCTTATTCTAAAA 59.927 44.000 0.00 0.00 0.00 1.52
653 655 6.744622 GCCCCCTACCTAGCTTATTCTAAAAG 60.745 46.154 0.00 0.00 0.00 2.27
669 671 8.791327 ATTCTAAAAGCCCAACCAAATTTATG 57.209 30.769 0.00 0.00 0.00 1.90
672 674 8.214364 TCTAAAAGCCCAACCAAATTTATGTTT 58.786 29.630 3.25 0.00 0.00 2.83
673 675 7.652524 AAAAGCCCAACCAAATTTATGTTTT 57.347 28.000 3.25 0.00 0.00 2.43
674 676 7.652524 AAAGCCCAACCAAATTTATGTTTTT 57.347 28.000 3.25 0.73 0.00 1.94
676 678 7.977789 AGCCCAACCAAATTTATGTTTTTAG 57.022 32.000 3.25 0.00 0.00 1.85
677 679 7.740805 AGCCCAACCAAATTTATGTTTTTAGA 58.259 30.769 3.25 0.00 0.00 2.10
679 681 8.503196 GCCCAACCAAATTTATGTTTTTAGAAG 58.497 33.333 3.25 0.00 0.00 2.85
680 682 8.503196 CCCAACCAAATTTATGTTTTTAGAAGC 58.497 33.333 3.25 0.00 0.00 3.86
681 683 8.503196 CCAACCAAATTTATGTTTTTAGAAGCC 58.497 33.333 3.25 0.00 0.00 4.35
682 684 9.271828 CAACCAAATTTATGTTTTTAGAAGCCT 57.728 29.630 3.25 0.00 0.00 4.58
694 696 9.702494 TGTTTTTAGAAGCCTAGTAGTTAAGAC 57.298 33.333 0.00 0.00 0.00 3.01
695 697 9.926158 GTTTTTAGAAGCCTAGTAGTTAAGACT 57.074 33.333 0.00 0.00 39.97 3.24
697 699 9.924650 TTTTAGAAGCCTAGTAGTTAAGACTTG 57.075 33.333 0.00 0.00 37.33 3.16
699 701 7.160547 AGAAGCCTAGTAGTTAAGACTTGAC 57.839 40.000 1.94 1.94 37.33 3.18
700 702 6.949463 AGAAGCCTAGTAGTTAAGACTTGACT 59.051 38.462 16.02 16.02 37.33 3.41
703 705 8.826293 AGCCTAGTAGTTAAGACTTGACTAAT 57.174 34.615 19.74 19.74 34.13 1.73
704 706 9.917887 AGCCTAGTAGTTAAGACTTGACTAATA 57.082 33.333 18.46 19.22 34.13 0.98
709 711 9.257428 AGTAGTTAAGACTTGACTAATAGGCTT 57.743 33.333 18.46 0.00 42.30 4.35
739 741 8.437360 AAAGAAAATTTTGTTTGGGCTTCTAG 57.563 30.769 21.37 0.00 33.13 2.43
740 742 7.360113 AGAAAATTTTGTTTGGGCTTCTAGA 57.640 32.000 8.47 0.00 0.00 2.43
741 743 7.791029 AGAAAATTTTGTTTGGGCTTCTAGAA 58.209 30.769 8.47 4.81 0.00 2.10
743 745 9.705290 GAAAATTTTGTTTGGGCTTCTAGAATA 57.295 29.630 8.47 0.00 0.00 1.75
746 748 5.897377 TTGTTTGGGCTTCTAGAATAAGC 57.103 39.130 5.44 5.98 46.90 3.09
747 749 5.179452 TGTTTGGGCTTCTAGAATAAGCT 57.821 39.130 13.28 0.00 46.81 3.74
748 750 4.943705 TGTTTGGGCTTCTAGAATAAGCTG 59.056 41.667 13.28 0.00 46.81 4.24
749 751 3.845781 TGGGCTTCTAGAATAAGCTGG 57.154 47.619 13.28 0.00 46.81 4.85
750 752 3.384168 TGGGCTTCTAGAATAAGCTGGA 58.616 45.455 13.28 0.00 46.81 3.86
753 755 5.247110 TGGGCTTCTAGAATAAGCTGGATAG 59.753 44.000 13.28 0.00 46.81 2.08
754 756 5.337975 GGGCTTCTAGAATAAGCTGGATAGG 60.338 48.000 13.28 0.00 46.81 2.57
755 757 5.337975 GGCTTCTAGAATAAGCTGGATAGGG 60.338 48.000 13.28 0.00 46.81 3.53
756 758 5.337975 GCTTCTAGAATAAGCTGGATAGGGG 60.338 48.000 5.44 0.00 44.75 4.79
757 759 4.689062 TCTAGAATAAGCTGGATAGGGGG 58.311 47.826 0.00 0.00 0.00 5.40
774 1121 2.027385 GGGGGCAGCTTATTCTGAAAG 58.973 52.381 0.00 0.00 36.19 2.62
801 1148 1.539157 AGCTAGCAAAAGAACTGGCC 58.461 50.000 18.83 0.00 40.92 5.36
849 4502 1.748879 CTACGGCCCACCCATGTTG 60.749 63.158 0.00 0.00 0.00 3.33
897 5524 2.885266 TGCTCGCCTCTAGTTATAGGTG 59.115 50.000 2.96 2.96 43.43 4.00
982 5609 2.272146 CCATGAAGGACCGGGTGG 59.728 66.667 3.30 0.00 41.22 4.61
1021 5648 2.622436 CAGTTCCAGAATCGTCTTCCC 58.378 52.381 0.00 0.00 28.78 3.97
1075 5702 2.435059 GCCGTTGAGGAGCAGGAC 60.435 66.667 0.00 0.00 45.00 3.85
1136 5763 4.704833 CAGCGGTCCCCCACACAG 62.705 72.222 0.00 0.00 0.00 3.66
1162 5789 2.962253 GACTATGACGGCAGCGCC 60.962 66.667 2.29 9.20 46.75 6.53
1381 6008 1.361668 CCAAGATGAAGTCCGTGCCG 61.362 60.000 0.00 0.00 0.00 5.69
1465 6092 4.471386 TCACCTGCCTAGCTTATTTCTCTT 59.529 41.667 0.00 0.00 0.00 2.85
1497 6124 2.177394 TGCGTTTGTGGATCAGCTAA 57.823 45.000 0.00 0.00 0.00 3.09
1499 6126 3.081061 TGCGTTTGTGGATCAGCTAATT 58.919 40.909 0.00 0.00 0.00 1.40
1503 6130 4.176271 GTTTGTGGATCAGCTAATTTGCC 58.824 43.478 8.30 0.00 0.00 4.52
1507 6134 4.199310 GTGGATCAGCTAATTTGCCTACA 58.801 43.478 8.30 0.00 0.00 2.74
1538 6165 3.246936 GCCCGAGTTGACCGAATAAATAC 59.753 47.826 0.00 0.00 0.00 1.89
1539 6166 4.435425 CCCGAGTTGACCGAATAAATACA 58.565 43.478 0.00 0.00 0.00 2.29
1540 6167 4.506654 CCCGAGTTGACCGAATAAATACAG 59.493 45.833 0.00 0.00 0.00 2.74
1541 6168 5.107133 CCGAGTTGACCGAATAAATACAGT 58.893 41.667 0.00 0.00 0.00 3.55
1542 6169 6.267817 CCGAGTTGACCGAATAAATACAGTA 58.732 40.000 0.00 0.00 0.00 2.74
1588 6215 4.202121 GGGTGTAGCTGTCTATCGAATTCA 60.202 45.833 6.22 0.00 0.00 2.57
1684 6311 3.338249 CGGACCTGTTCAAGTGATGATT 58.662 45.455 0.00 0.00 38.03 2.57
1760 6387 6.913873 ATGACATAGCAAATTGGCATTTTC 57.086 33.333 7.75 0.00 38.44 2.29
1761 6388 5.177326 TGACATAGCAAATTGGCATTTTCC 58.823 37.500 7.75 0.00 35.83 3.13
1770 6397 1.710816 TGGCATTTTCCCGGTTTCTT 58.289 45.000 0.00 0.00 0.00 2.52
1797 6431 0.904865 TCGATTGCCACCTCCTGACT 60.905 55.000 0.00 0.00 0.00 3.41
1842 6941 2.631062 CCCCCACCTCCAACTTTAAAAC 59.369 50.000 0.00 0.00 0.00 2.43
1850 6949 7.335673 CCACCTCCAACTTTAAAACAAAATTGT 59.664 33.333 0.00 0.00 44.72 2.71
1867 6966 8.257306 ACAAAATTGTCCTTTCTTTGCTTCTAA 58.743 29.630 0.00 0.00 36.50 2.10
1880 6979 9.466497 TTCTTTGCTTCTAAGATTATGTTCCAT 57.534 29.630 0.00 0.00 32.09 3.41
2003 7139 2.224066 CCAGATGAACCGGTATGAGTCC 60.224 54.545 8.00 0.00 0.00 3.85
2009 7145 1.553706 ACCGGTATGAGTCCTTTCGT 58.446 50.000 4.49 0.00 0.00 3.85
2021 7157 5.067936 TGAGTCCTTTCGTAGATCTGGATTC 59.932 44.000 5.18 9.02 37.07 2.52
2060 7196 7.450074 TGAAAAAGGTAAGACTGCTTCTATCA 58.550 34.615 0.00 0.00 35.56 2.15
2061 7197 8.103305 TGAAAAAGGTAAGACTGCTTCTATCAT 58.897 33.333 0.00 0.00 35.56 2.45
2243 7447 4.372656 GCTGGAGTTGTCATACATAGGTC 58.627 47.826 0.00 0.00 0.00 3.85
2257 7461 2.380084 TAGGTCTGCCTGTTAAAGCG 57.620 50.000 0.00 0.00 46.47 4.68
2273 7477 7.469260 TGTTAAAGCGCACCTATTATTTTCTC 58.531 34.615 11.47 0.00 0.00 2.87
2295 7499 8.690203 TCTCATACATCTTTCCTTTTGTCAAA 57.310 30.769 0.00 0.00 0.00 2.69
2296 7500 9.300681 TCTCATACATCTTTCCTTTTGTCAAAT 57.699 29.630 0.00 0.00 0.00 2.32
2297 7501 9.350357 CTCATACATCTTTCCTTTTGTCAAATG 57.650 33.333 0.00 1.55 0.00 2.32
2299 7503 5.299949 ACATCTTTCCTTTTGTCAAATGCC 58.700 37.500 0.00 0.00 0.00 4.40
2300 7504 5.070847 ACATCTTTCCTTTTGTCAAATGCCT 59.929 36.000 0.00 0.00 0.00 4.75
2301 7505 5.612725 TCTTTCCTTTTGTCAAATGCCTT 57.387 34.783 0.00 0.00 0.00 4.35
2362 7566 8.749026 TGTCTTATAGTACTCCCTCTGTAAAG 57.251 38.462 0.00 0.00 0.00 1.85
2363 7567 8.554870 TGTCTTATAGTACTCCCTCTGTAAAGA 58.445 37.037 0.00 0.00 0.00 2.52
2364 7568 9.406113 GTCTTATAGTACTCCCTCTGTAAAGAA 57.594 37.037 0.00 0.00 0.00 2.52
2365 7569 9.986157 TCTTATAGTACTCCCTCTGTAAAGAAA 57.014 33.333 0.00 0.00 0.00 2.52
2369 7573 9.939424 ATAGTACTCCCTCTGTAAAGAAATACT 57.061 33.333 0.00 0.00 0.00 2.12
2370 7574 8.296211 AGTACTCCCTCTGTAAAGAAATACTC 57.704 38.462 0.00 0.00 0.00 2.59
2371 7575 6.547930 ACTCCCTCTGTAAAGAAATACTCC 57.452 41.667 0.00 0.00 0.00 3.85
2372 7576 5.425862 ACTCCCTCTGTAAAGAAATACTCCC 59.574 44.000 0.00 0.00 0.00 4.30
2373 7577 5.600749 TCCCTCTGTAAAGAAATACTCCCT 58.399 41.667 0.00 0.00 0.00 4.20
2374 7578 5.661759 TCCCTCTGTAAAGAAATACTCCCTC 59.338 44.000 0.00 0.00 0.00 4.30
2375 7579 5.163290 CCCTCTGTAAAGAAATACTCCCTCC 60.163 48.000 0.00 0.00 0.00 4.30
2376 7580 5.452077 CCTCTGTAAAGAAATACTCCCTCCG 60.452 48.000 0.00 0.00 0.00 4.63
2377 7581 5.021458 TCTGTAAAGAAATACTCCCTCCGT 58.979 41.667 0.00 0.00 0.00 4.69
2378 7582 5.126707 TCTGTAAAGAAATACTCCCTCCGTC 59.873 44.000 0.00 0.00 0.00 4.79
2379 7583 3.908643 AAAGAAATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
2380 7584 1.790818 AGAAATACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
2381 7585 1.007963 AGAAATACTCCCTCCGTCCCA 59.992 52.381 0.00 0.00 0.00 4.37
2382 7586 1.835531 GAAATACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
2383 7587 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2384 7588 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2385 7589 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2386 7590 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2387 7591 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2388 7592 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2389 7593 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2390 7594 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2391 7595 2.554344 CCCTCCGTCCCAAAATTCTTGA 60.554 50.000 3.00 0.00 0.00 3.02
2392 7596 2.488153 CCTCCGTCCCAAAATTCTTGAC 59.512 50.000 3.00 0.00 0.00 3.18
2393 7597 3.412386 CTCCGTCCCAAAATTCTTGACT 58.588 45.455 3.00 0.00 0.00 3.41
2394 7598 3.821033 CTCCGTCCCAAAATTCTTGACTT 59.179 43.478 3.00 0.00 0.00 3.01
2395 7599 4.975631 TCCGTCCCAAAATTCTTGACTTA 58.024 39.130 3.00 0.00 0.00 2.24
2396 7600 5.001232 TCCGTCCCAAAATTCTTGACTTAG 58.999 41.667 3.00 0.00 0.00 2.18
2397 7601 5.001232 CCGTCCCAAAATTCTTGACTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2398 7602 5.648092 CCGTCCCAAAATTCTTGACTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2399 7603 6.151144 CCGTCCCAAAATTCTTGACTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2400 7604 7.309194 CCGTCCCAAAATTCTTGACTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2401 7605 7.538678 CGTCCCAAAATTCTTGACTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2402 7606 8.360390 GTCCCAAAATTCTTGACTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2403 7607 8.576442 TCCCAAAATTCTTGACTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2404 7608 8.579863 CCCAAAATTCTTGACTTAGATTTGTCT 58.420 33.333 0.00 0.00 34.57 3.41
2436 7640 9.740239 TGGATGTATCTAATACTAAAACGTGAC 57.260 33.333 0.00 0.00 36.70 3.67
2437 7641 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
2448 7652 7.045725 ACTAAAACGTGACTTGATACATTCG 57.954 36.000 0.00 0.00 0.00 3.34
2449 7653 5.917541 AAAACGTGACTTGATACATTCGT 57.082 34.783 0.00 0.00 0.00 3.85
2450 7654 7.809331 ACTAAAACGTGACTTGATACATTCGTA 59.191 33.333 0.00 0.00 0.00 3.43
2451 7655 7.591006 AAAACGTGACTTGATACATTCGTAT 57.409 32.000 0.00 0.00 41.16 3.06
2452 7656 7.591006 AAACGTGACTTGATACATTCGTATT 57.409 32.000 0.00 0.00 38.48 1.89
2453 7657 7.591006 AACGTGACTTGATACATTCGTATTT 57.409 32.000 0.00 0.00 38.48 1.40
2454 7658 8.692110 AACGTGACTTGATACATTCGTATTTA 57.308 30.769 0.00 0.00 38.48 1.40
2455 7659 8.336498 ACGTGACTTGATACATTCGTATTTAG 57.664 34.615 0.00 0.00 38.48 1.85
2456 7660 8.186163 ACGTGACTTGATACATTCGTATTTAGA 58.814 33.333 0.00 0.00 38.48 2.10
2457 7661 8.469902 CGTGACTTGATACATTCGTATTTAGAC 58.530 37.037 0.00 0.00 38.48 2.59
2480 8166 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2482 8168 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2489 8175 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2492 8178 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2493 8179 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2495 8181 2.852714 TTGGGACGGAGGGAGTATAA 57.147 50.000 0.00 0.00 0.00 0.98
2496 8182 2.376695 TGGGACGGAGGGAGTATAAG 57.623 55.000 0.00 0.00 0.00 1.73
2497 8183 1.854939 TGGGACGGAGGGAGTATAAGA 59.145 52.381 0.00 0.00 0.00 2.10
2500 8186 2.584236 GACGGAGGGAGTATAAGAGCA 58.416 52.381 0.00 0.00 0.00 4.26
2504 8190 5.145564 ACGGAGGGAGTATAAGAGCATTTA 58.854 41.667 0.00 0.00 0.00 1.40
2505 8191 5.244178 ACGGAGGGAGTATAAGAGCATTTAG 59.756 44.000 0.00 0.00 0.00 1.85
2506 8192 5.477291 CGGAGGGAGTATAAGAGCATTTAGA 59.523 44.000 0.00 0.00 0.00 2.10
2507 8193 6.153680 CGGAGGGAGTATAAGAGCATTTAGAT 59.846 42.308 0.00 0.00 0.00 1.98
2509 8195 7.179338 GGAGGGAGTATAAGAGCATTTAGATCA 59.821 40.741 0.00 0.00 34.30 2.92
2512 8198 9.026121 GGGAGTATAAGAGCATTTAGATCACTA 57.974 37.037 0.00 0.00 34.30 2.74
2513 8199 9.849166 GGAGTATAAGAGCATTTAGATCACTAC 57.151 37.037 0.00 0.00 34.30 2.73
2533 8219 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2534 8220 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2535 8221 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2548 8234 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2551 8237 7.035840 ACGCTCTTATATTTCTTTACGGAGA 57.964 36.000 0.00 0.00 0.00 3.71
2552 8238 7.140048 ACGCTCTTATATTTCTTTACGGAGAG 58.860 38.462 0.00 0.00 33.16 3.20
2553 8239 7.013083 ACGCTCTTATATTTCTTTACGGAGAGA 59.987 37.037 0.00 0.00 32.02 3.10
2554 8240 7.535940 CGCTCTTATATTTCTTTACGGAGAGAG 59.464 40.741 0.00 0.00 32.02 3.20
2578 8264 3.678056 TTGTTAGACTGTAGGTGCAGG 57.322 47.619 0.00 0.00 40.59 4.85
2593 8279 6.515272 AGGTGCAGGTAAAACTTAATGATG 57.485 37.500 0.00 0.00 0.00 3.07
2606 8292 4.220602 ACTTAATGATGGTTGCTTTCACCC 59.779 41.667 0.00 0.00 0.00 4.61
2631 8317 9.689501 CCTAGTTGGGGACTAATTTATTTTACA 57.310 33.333 0.00 0.00 40.25 2.41
2634 8320 8.899771 AGTTGGGGACTAATTTATTTTACATCG 58.100 33.333 0.00 0.00 36.65 3.84
2730 8421 8.873215 AATATCTGTTCGTACTGAGTTATTGG 57.127 34.615 7.73 0.00 35.96 3.16
2744 8435 0.623194 TATTGGCAGCTAAGTGGGCA 59.377 50.000 0.00 0.00 35.11 5.36
2746 8437 0.966875 TTGGCAGCTAAGTGGGCATG 60.967 55.000 0.00 0.00 36.94 4.06
2747 8438 2.779033 GGCAGCTAAGTGGGCATGC 61.779 63.158 9.90 9.90 35.10 4.06
2748 8439 1.751927 GCAGCTAAGTGGGCATGCT 60.752 57.895 18.92 0.00 34.01 3.79
2750 8441 2.018644 GCAGCTAAGTGGGCATGCTTA 61.019 52.381 18.92 7.29 34.01 3.09
2751 8442 2.579873 CAGCTAAGTGGGCATGCTTAT 58.420 47.619 18.92 2.57 0.00 1.73
2752 8443 3.743521 CAGCTAAGTGGGCATGCTTATA 58.256 45.455 18.92 3.63 0.00 0.98
2753 8444 3.750130 CAGCTAAGTGGGCATGCTTATAG 59.250 47.826 18.92 13.42 0.00 1.31
2764 8455 7.547370 GTGGGCATGCTTATAGAATACTAGAAG 59.453 40.741 18.92 0.00 45.30 2.85
2810 8501 9.581289 TTCCTTCTAATATTTTTGTGAACTGGA 57.419 29.630 0.00 0.00 0.00 3.86
2811 8502 9.753674 TCCTTCTAATATTTTTGTGAACTGGAT 57.246 29.630 0.00 0.00 0.00 3.41
2812 8503 9.793252 CCTTCTAATATTTTTGTGAACTGGATG 57.207 33.333 0.00 0.00 0.00 3.51
2834 11986 1.899814 TGACCATGTACCTGGAGTCAC 59.100 52.381 22.41 9.24 39.73 3.67
2852 12004 6.350612 GGAGTCACCAGGTCTATAATATGCTC 60.351 46.154 0.00 0.00 38.79 4.26
2853 12005 5.482175 AGTCACCAGGTCTATAATATGCTCC 59.518 44.000 0.00 0.00 0.00 4.70
2855 12007 5.246203 TCACCAGGTCTATAATATGCTCCAC 59.754 44.000 0.00 0.00 0.00 4.02
2869 12029 3.569210 CCACTGGTGGCAGGGACA 61.569 66.667 6.84 0.00 44.73 4.02
2898 12058 9.295825 TGTTTGATGTATTTTCTCATTAGTGGT 57.704 29.630 0.00 0.00 0.00 4.16
2926 12086 9.926751 CAAATCAGTGTGTGCTTAGATATTTAG 57.073 33.333 0.00 0.00 0.00 1.85
3002 12162 6.653183 CAGTCAAAAGATATCTATGCCAACG 58.347 40.000 5.46 0.00 0.00 4.10
3008 12168 5.078411 AGATATCTATGCCAACGACCATC 57.922 43.478 2.53 0.00 0.00 3.51
3113 12273 5.055265 TCCTTGTGGAACCATTGAAGTTA 57.945 39.130 0.00 0.00 39.87 2.24
3116 12276 7.235079 TCCTTGTGGAACCATTGAAGTTATTA 58.765 34.615 0.00 0.00 39.87 0.98
3117 12277 7.175990 TCCTTGTGGAACCATTGAAGTTATTAC 59.824 37.037 0.00 0.00 39.87 1.89
3118 12278 7.040062 CCTTGTGGAACCATTGAAGTTATTACA 60.040 37.037 0.00 0.00 34.36 2.41
3133 12294 6.110033 AGTTATTACATACGTGTTGGCATGA 58.890 36.000 0.00 0.00 39.77 3.07
3141 12302 1.336148 CGTGTTGGCATGACAAGCAAT 60.336 47.619 16.10 0.00 33.58 3.56
3186 12349 9.678941 TCTCGAGCTGTTATATGTTAATAGTTG 57.321 33.333 7.81 0.00 0.00 3.16
3218 12388 6.601613 TGTAGTTATCCCTGCCAAAAGTAATG 59.398 38.462 0.00 0.00 0.00 1.90
3221 12391 3.517296 TCCCTGCCAAAAGTAATGTCA 57.483 42.857 0.00 0.00 0.00 3.58
3222 12392 4.046286 TCCCTGCCAAAAGTAATGTCAT 57.954 40.909 0.00 0.00 0.00 3.06
3226 12396 5.047092 CCCTGCCAAAAGTAATGTCATTTCT 60.047 40.000 2.79 0.78 0.00 2.52
3227 12397 6.095377 CCTGCCAAAAGTAATGTCATTTCTC 58.905 40.000 2.79 0.00 0.00 2.87
3228 12398 5.698832 TGCCAAAAGTAATGTCATTTCTCG 58.301 37.500 2.79 0.00 0.00 4.04
3230 12400 5.335661 GCCAAAAGTAATGTCATTTCTCGGT 60.336 40.000 2.79 0.00 0.00 4.69
3233 12403 8.293867 CCAAAAGTAATGTCATTTCTCGGTTTA 58.706 33.333 2.79 0.00 0.00 2.01
3234 12404 9.329913 CAAAAGTAATGTCATTTCTCGGTTTAG 57.670 33.333 2.79 0.00 0.00 1.85
3286 12457 8.667463 GTTGTTTGTTAGTAAACTGTTGGTAGA 58.333 33.333 0.00 0.00 40.36 2.59
3298 12469 4.827284 ACTGTTGGTAGAATGGTTTCCTTG 59.173 41.667 0.00 0.00 31.84 3.61
3300 12471 3.449746 TGGTAGAATGGTTTCCTTGGG 57.550 47.619 0.00 0.00 31.84 4.12
3456 12627 2.099427 GCGATCCGTTCCTAGACTCTTT 59.901 50.000 0.00 0.00 0.00 2.52
3517 12688 3.187637 GTCGTATGATTCTCTCTCGGAGG 59.812 52.174 4.96 0.00 42.10 4.30
3546 12717 7.266905 AGGTTATGGTAACTGTAATGGAACT 57.733 36.000 0.51 0.00 37.61 3.01
3549 12720 7.066645 GGTTATGGTAACTGTAATGGAACTTCC 59.933 40.741 0.20 0.20 35.18 3.46
3563 12734 1.896220 ACTTCCGCTTTGCAATCTCA 58.104 45.000 0.00 0.00 0.00 3.27
3573 12744 0.447406 TGCAATCTCAATGCGTTCCG 59.553 50.000 0.00 0.00 46.76 4.30
3592 12763 1.920574 CGACACTTCTACTTGCCATCG 59.079 52.381 0.00 0.00 0.00 3.84
3618 12790 3.486383 GAAGGTGATTGTTGGGAGAACA 58.514 45.455 0.00 0.00 0.00 3.18
3661 12833 4.202010 GCGTGATGGTATTTTATGGTGCTT 60.202 41.667 0.00 0.00 0.00 3.91
3663 12835 5.043248 GTGATGGTATTTTATGGTGCTTGC 58.957 41.667 0.00 0.00 0.00 4.01
3669 12841 5.588648 GGTATTTTATGGTGCTTGCTACTCA 59.411 40.000 0.00 0.00 0.00 3.41
3674 12846 1.350684 TGGTGCTTGCTACTCATTGGA 59.649 47.619 0.00 0.00 0.00 3.53
3675 12847 2.224744 TGGTGCTTGCTACTCATTGGAA 60.225 45.455 0.00 0.00 0.00 3.53
3676 12848 3.019564 GGTGCTTGCTACTCATTGGAAT 58.980 45.455 0.00 0.00 0.00 3.01
3677 12849 3.445096 GGTGCTTGCTACTCATTGGAATT 59.555 43.478 0.00 0.00 0.00 2.17
3678 12850 4.082026 GGTGCTTGCTACTCATTGGAATTT 60.082 41.667 0.00 0.00 0.00 1.82
3679 12851 4.860907 GTGCTTGCTACTCATTGGAATTTG 59.139 41.667 0.00 0.00 0.00 2.32
3680 12852 3.861689 GCTTGCTACTCATTGGAATTTGC 59.138 43.478 0.00 0.00 0.00 3.68
3681 12853 4.618927 GCTTGCTACTCATTGGAATTTGCA 60.619 41.667 0.00 0.00 0.00 4.08
3682 12854 5.657474 CTTGCTACTCATTGGAATTTGCAT 58.343 37.500 0.00 0.00 0.00 3.96
3683 12855 5.252969 TGCTACTCATTGGAATTTGCATC 57.747 39.130 0.00 0.00 0.00 3.91
3684 12856 4.951715 TGCTACTCATTGGAATTTGCATCT 59.048 37.500 0.00 0.00 0.00 2.90
3685 12857 6.121590 TGCTACTCATTGGAATTTGCATCTA 58.878 36.000 0.00 0.00 0.00 1.98
3686 12858 6.774170 TGCTACTCATTGGAATTTGCATCTAT 59.226 34.615 0.00 0.00 0.00 1.98
3687 12859 7.938490 TGCTACTCATTGGAATTTGCATCTATA 59.062 33.333 0.00 0.00 0.00 1.31
3688 12860 8.786898 GCTACTCATTGGAATTTGCATCTATAA 58.213 33.333 0.00 0.00 0.00 0.98
3690 12862 7.655490 ACTCATTGGAATTTGCATCTATAAGC 58.345 34.615 0.00 0.00 0.00 3.09
3691 12863 7.504911 ACTCATTGGAATTTGCATCTATAAGCT 59.495 33.333 0.00 0.00 0.00 3.74
3692 12864 7.654568 TCATTGGAATTTGCATCTATAAGCTG 58.345 34.615 0.00 0.00 0.00 4.24
3693 12865 7.286087 TCATTGGAATTTGCATCTATAAGCTGT 59.714 33.333 0.00 0.00 0.00 4.40
3724 12896 8.935844 TGTGACTGTTTCATGCTTATTTACTAG 58.064 33.333 0.00 0.00 36.32 2.57
3742 12914 8.662781 TTTACTAGTGGTACTATACTACCGTG 57.337 38.462 5.39 0.00 40.58 4.94
3743 12915 6.240549 ACTAGTGGTACTATACTACCGTGT 57.759 41.667 0.00 0.00 40.58 4.49
3744 12916 6.051717 ACTAGTGGTACTATACTACCGTGTG 58.948 44.000 0.00 0.00 40.58 3.82
3745 12917 4.202441 AGTGGTACTATACTACCGTGTGG 58.798 47.826 0.00 0.00 40.58 4.17
3746 12918 6.909698 CTAGTGGTACTATACTACCGTGTGGT 60.910 46.154 0.00 0.00 40.58 4.16
3747 12919 8.331845 CTAGTGGTACTATACTACCGTGTGGTT 61.332 44.444 0.00 0.00 40.58 3.67
3758 12930 3.757745 CCGTGTGGTTCAATTGTATCC 57.242 47.619 5.13 7.26 0.00 2.59
3759 12931 2.095213 CCGTGTGGTTCAATTGTATCCG 59.905 50.000 5.13 0.00 0.00 4.18
3760 12932 2.739913 CGTGTGGTTCAATTGTATCCGT 59.260 45.455 5.13 0.00 0.00 4.69
3761 12933 3.187637 CGTGTGGTTCAATTGTATCCGTT 59.812 43.478 5.13 0.00 0.00 4.44
3762 12934 4.389382 CGTGTGGTTCAATTGTATCCGTTA 59.611 41.667 5.13 0.00 0.00 3.18
3763 12935 5.064198 CGTGTGGTTCAATTGTATCCGTTAT 59.936 40.000 5.13 0.00 0.00 1.89
3764 12936 6.256104 CGTGTGGTTCAATTGTATCCGTTATA 59.744 38.462 5.13 0.00 0.00 0.98
3765 12937 7.404203 GTGTGGTTCAATTGTATCCGTTATAC 58.596 38.462 5.13 2.21 40.87 1.47
3766 12938 6.539464 TGTGGTTCAATTGTATCCGTTATACC 59.461 38.462 5.13 0.00 39.91 2.73
3767 12939 6.764560 GTGGTTCAATTGTATCCGTTATACCT 59.235 38.462 5.13 0.00 39.91 3.08
3768 12940 6.764085 TGGTTCAATTGTATCCGTTATACCTG 59.236 38.462 5.13 0.33 39.91 4.00
3769 12941 6.987992 GGTTCAATTGTATCCGTTATACCTGA 59.012 38.462 5.13 2.13 39.91 3.86
3770 12942 7.660208 GGTTCAATTGTATCCGTTATACCTGAT 59.340 37.037 5.13 0.00 39.91 2.90
3771 12943 8.709646 GTTCAATTGTATCCGTTATACCTGATC 58.290 37.037 5.13 0.00 39.91 2.92
3812 12984 5.537188 TGCTAAATTGTCCGAGCAAAAATT 58.463 33.333 0.00 0.00 41.78 1.82
3831 13003 9.396022 CAAAAATTATGTACCTGACCTGAGTAT 57.604 33.333 0.00 0.00 0.00 2.12
3836 13008 4.684724 TGTACCTGACCTGAGTATCCTTT 58.315 43.478 0.00 0.00 0.00 3.11
3846 13018 4.183858 TATCCTTTGCCGGGCGGG 62.184 66.667 15.40 15.83 39.58 6.13
3863 13035 1.524482 GGGACCTCATCAGCACTCC 59.476 63.158 0.00 0.00 0.00 3.85
3865 13037 0.980231 GGACCTCATCAGCACTCCCT 60.980 60.000 0.00 0.00 0.00 4.20
3866 13038 0.177604 GACCTCATCAGCACTCCCTG 59.822 60.000 0.00 0.00 0.00 4.45
3882 13054 1.694048 CCCTGCCTCTAACTCCTGGAT 60.694 57.143 0.00 0.00 0.00 3.41
3895 13067 2.350895 TGGATTCCCAGTGCCGTG 59.649 61.111 0.00 0.00 37.58 4.94
3896 13068 2.351276 GGATTCCCAGTGCCGTGT 59.649 61.111 0.00 0.00 0.00 4.49
3897 13069 1.303317 GGATTCCCAGTGCCGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
3898 13070 1.305930 GGATTCCCAGTGCCGTGTTC 61.306 60.000 0.00 0.00 0.00 3.18
3899 13071 0.321653 GATTCCCAGTGCCGTGTTCT 60.322 55.000 0.00 0.00 0.00 3.01
3900 13072 0.110486 ATTCCCAGTGCCGTGTTCTT 59.890 50.000 0.00 0.00 0.00 2.52
3901 13073 0.759959 TTCCCAGTGCCGTGTTCTTA 59.240 50.000 0.00 0.00 0.00 2.10
3902 13074 0.759959 TCCCAGTGCCGTGTTCTTAA 59.240 50.000 0.00 0.00 0.00 1.85
3903 13075 0.872388 CCCAGTGCCGTGTTCTTAAC 59.128 55.000 0.00 0.00 0.00 2.01
3904 13076 0.511221 CCAGTGCCGTGTTCTTAACG 59.489 55.000 0.00 0.00 40.70 3.18
3914 13086 4.209112 CGTGTTCTTAACGGAGAAAAAGC 58.791 43.478 0.60 0.00 37.40 3.51
3915 13087 4.260456 CGTGTTCTTAACGGAGAAAAAGCA 60.260 41.667 0.60 0.00 37.40 3.91
3916 13088 5.560183 CGTGTTCTTAACGGAGAAAAAGCAT 60.560 40.000 0.60 0.00 37.40 3.79
3917 13089 5.625311 GTGTTCTTAACGGAGAAAAAGCATG 59.375 40.000 0.00 0.00 37.40 4.06
3918 13090 5.154222 GTTCTTAACGGAGAAAAAGCATGG 58.846 41.667 0.00 0.00 37.40 3.66
3919 13091 3.756434 TCTTAACGGAGAAAAAGCATGGG 59.244 43.478 0.00 0.00 0.00 4.00
3920 13092 2.286365 AACGGAGAAAAAGCATGGGA 57.714 45.000 0.00 0.00 0.00 4.37
3921 13093 1.534729 ACGGAGAAAAAGCATGGGAC 58.465 50.000 0.00 0.00 0.00 4.46
3922 13094 0.447801 CGGAGAAAAAGCATGGGACG 59.552 55.000 0.00 0.00 0.00 4.79
3923 13095 1.534729 GGAGAAAAAGCATGGGACGT 58.465 50.000 0.00 0.00 0.00 4.34
3924 13096 1.468914 GGAGAAAAAGCATGGGACGTC 59.531 52.381 7.13 7.13 0.00 4.34
3925 13097 1.468914 GAGAAAAAGCATGGGACGTCC 59.531 52.381 27.04 27.04 0.00 4.79
3953 13125 2.295885 GCTCATCCAGAAAGACATGGG 58.704 52.381 0.00 0.00 37.19 4.00
3993 13165 5.060427 AGTCAGAGCTACCTAGTCATCAT 57.940 43.478 0.00 0.00 0.00 2.45
3997 13169 4.699735 CAGAGCTACCTAGTCATCATCGAT 59.300 45.833 0.00 0.00 0.00 3.59
4038 13210 7.615582 TTGACATAGATCAACAAAGATGTCC 57.384 36.000 9.61 0.00 41.49 4.02
4048 13220 2.290071 ACAAAGATGTCCTGTAACCCCG 60.290 50.000 0.00 0.00 33.41 5.73
4077 13251 2.405892 AAAGATGTCGTGTTGCTTGC 57.594 45.000 0.00 0.00 0.00 4.01
4078 13252 1.308047 AAGATGTCGTGTTGCTTGCA 58.692 45.000 0.00 0.00 0.00 4.08
4079 13253 0.870393 AGATGTCGTGTTGCTTGCAG 59.130 50.000 0.00 0.00 0.00 4.41
4080 13254 0.588252 GATGTCGTGTTGCTTGCAGT 59.412 50.000 0.00 0.00 0.00 4.40
4081 13255 0.308684 ATGTCGTGTTGCTTGCAGTG 59.691 50.000 0.00 0.00 0.00 3.66
4082 13256 0.742635 TGTCGTGTTGCTTGCAGTGA 60.743 50.000 0.00 0.00 0.00 3.41
4083 13257 0.041839 GTCGTGTTGCTTGCAGTGAG 60.042 55.000 0.00 0.00 0.00 3.51
4084 13258 1.159713 TCGTGTTGCTTGCAGTGAGG 61.160 55.000 0.00 0.00 0.00 3.86
4085 13259 1.656441 GTGTTGCTTGCAGTGAGGG 59.344 57.895 0.00 0.00 0.00 4.30
4086 13260 1.103398 GTGTTGCTTGCAGTGAGGGT 61.103 55.000 0.00 0.00 0.00 4.34
4087 13261 0.819259 TGTTGCTTGCAGTGAGGGTC 60.819 55.000 0.00 0.00 0.00 4.46
4088 13262 0.536006 GTTGCTTGCAGTGAGGGTCT 60.536 55.000 0.00 0.00 0.00 3.85
4089 13263 0.183492 TTGCTTGCAGTGAGGGTCTT 59.817 50.000 0.00 0.00 0.00 3.01
4090 13264 0.183492 TGCTTGCAGTGAGGGTCTTT 59.817 50.000 0.00 0.00 0.00 2.52
4091 13265 0.595095 GCTTGCAGTGAGGGTCTTTG 59.405 55.000 0.00 0.00 0.00 2.77
4095 13269 0.954452 GCAGTGAGGGTCTTTGGTTG 59.046 55.000 0.00 0.00 0.00 3.77
4130 13304 1.898330 ATCGGGGGCATTTGTTTGGC 61.898 55.000 0.00 0.00 41.20 4.52
4143 13317 3.829886 TGTTTGGCGAGAAATGATGAC 57.170 42.857 0.00 0.00 0.00 3.06
4151 13325 3.306973 GCGAGAAATGATGACGATGACAA 59.693 43.478 0.00 0.00 0.00 3.18
4152 13326 4.025396 GCGAGAAATGATGACGATGACAAT 60.025 41.667 0.00 0.00 0.00 2.71
4153 13327 5.503031 GCGAGAAATGATGACGATGACAATT 60.503 40.000 0.00 0.00 0.00 2.32
4154 13328 6.481134 CGAGAAATGATGACGATGACAATTT 58.519 36.000 0.00 0.00 0.00 1.82
4155 13329 6.626488 CGAGAAATGATGACGATGACAATTTC 59.374 38.462 0.00 0.00 0.00 2.17
4156 13330 6.481134 AGAAATGATGACGATGACAATTTCG 58.519 36.000 0.00 0.00 41.04 3.46
4160 13334 3.947279 ACGATGACAATTTCGTGCG 57.053 47.368 2.25 0.00 46.03 5.34
4161 13335 0.179225 ACGATGACAATTTCGTGCGC 60.179 50.000 0.00 0.00 46.03 6.09
4162 13336 0.095245 CGATGACAATTTCGTGCGCT 59.905 50.000 9.73 0.00 0.00 5.92
4163 13337 1.323235 CGATGACAATTTCGTGCGCTA 59.677 47.619 9.73 0.00 0.00 4.26
4164 13338 2.222707 CGATGACAATTTCGTGCGCTAA 60.223 45.455 9.73 0.00 0.00 3.09
4165 13339 2.873170 TGACAATTTCGTGCGCTAAG 57.127 45.000 9.73 0.00 0.00 2.18
4166 13340 2.409012 TGACAATTTCGTGCGCTAAGA 58.591 42.857 9.73 1.97 0.00 2.10
4167 13341 2.411748 TGACAATTTCGTGCGCTAAGAG 59.588 45.455 9.73 0.00 0.00 2.85
4168 13342 2.412089 GACAATTTCGTGCGCTAAGAGT 59.588 45.455 9.73 0.00 0.00 3.24
4169 13343 3.581755 ACAATTTCGTGCGCTAAGAGTA 58.418 40.909 9.73 0.00 0.00 2.59
4170 13344 3.612860 ACAATTTCGTGCGCTAAGAGTAG 59.387 43.478 9.73 0.00 0.00 2.57
4171 13345 2.273370 TTTCGTGCGCTAAGAGTAGG 57.727 50.000 9.73 0.00 0.00 3.18
4172 13346 0.179145 TTCGTGCGCTAAGAGTAGGC 60.179 55.000 9.73 0.00 0.00 3.93
4177 13351 3.757623 CGCTAAGAGTAGGCGCTAG 57.242 57.895 7.64 0.00 42.28 3.42
4178 13352 0.238817 CGCTAAGAGTAGGCGCTAGG 59.761 60.000 7.64 0.00 42.28 3.02
4179 13353 1.606903 GCTAAGAGTAGGCGCTAGGA 58.393 55.000 7.64 0.00 0.00 2.94
4180 13354 2.164338 GCTAAGAGTAGGCGCTAGGAT 58.836 52.381 7.64 0.00 0.00 3.24
4181 13355 2.094957 GCTAAGAGTAGGCGCTAGGATG 60.095 54.545 7.64 0.00 0.00 3.51
4182 13356 2.366640 AAGAGTAGGCGCTAGGATGA 57.633 50.000 7.64 0.00 0.00 2.92
4183 13357 2.595750 AGAGTAGGCGCTAGGATGAT 57.404 50.000 7.64 0.00 0.00 2.45
4184 13358 2.883026 AGAGTAGGCGCTAGGATGATT 58.117 47.619 7.64 0.00 0.00 2.57
4246 13420 2.779506 CCGCTAGGGTTCAACTTTTCT 58.220 47.619 6.02 0.00 0.00 2.52
4418 13593 3.371063 TCAGACTGGTCGCCGGAC 61.371 66.667 5.05 0.00 42.66 4.79
4656 13831 0.392193 AGAGCAACATCTTCCTGGCG 60.392 55.000 0.00 0.00 0.00 5.69
4723 13899 2.797156 CCATCGATCTTTAGGAACGCAG 59.203 50.000 0.00 0.00 39.54 5.18
4754 13930 3.732212 TGGAAGAATATGACGGCATCTG 58.268 45.455 7.26 0.00 35.94 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.330063 GTGAAATCCAGATATGAATAGTGTCAA 57.670 33.333 0.00 0.00 0.00 3.18
79 80 6.469410 AGGTCCAAACTCGAAATGTACATTA 58.531 36.000 21.07 5.50 0.00 1.90
87 88 8.178313 AGAAATTTTAGGTCCAAACTCGAAAT 57.822 30.769 0.00 0.00 0.00 2.17
104 105 6.607019 TGTGACTACAACCCCTAGAAATTTT 58.393 36.000 0.00 0.00 32.88 1.82
117 118 6.033341 TGTTTGCAAGAAATGTGACTACAAC 58.967 36.000 0.00 0.00 40.84 3.32
119 120 5.826601 TGTTTGCAAGAAATGTGACTACA 57.173 34.783 0.00 0.00 41.89 2.74
184 185 5.523438 TCCCGTGCTTCAAGTTTAAAAAT 57.477 34.783 0.00 0.00 0.00 1.82
190 191 2.052782 ACTTCCCGTGCTTCAAGTTT 57.947 45.000 0.00 0.00 0.00 2.66
206 207 4.018688 GGTACTTCCATCTTTGGGGTACTT 60.019 45.833 18.71 0.00 43.69 2.24
212 213 4.510167 ATCTGGTACTTCCATCTTTGGG 57.490 45.455 0.00 0.00 46.12 4.12
217 218 6.389869 TGGGAAAATATCTGGTACTTCCATCT 59.610 38.462 11.00 0.00 46.12 2.90
223 224 5.191722 TCTGCTGGGAAAATATCTGGTACTT 59.808 40.000 0.00 0.00 0.00 2.24
237 238 3.007506 TCGTTTTCTACATCTGCTGGGAA 59.992 43.478 0.00 0.00 0.00 3.97
238 239 2.565391 TCGTTTTCTACATCTGCTGGGA 59.435 45.455 0.00 0.00 0.00 4.37
261 262 1.298014 CCCCAGTCAAGGAGCAGTC 59.702 63.158 0.00 0.00 0.00 3.51
262 263 2.227036 CCCCCAGTCAAGGAGCAGT 61.227 63.158 0.00 0.00 0.00 4.40
304 305 1.739067 CCCTTTGGATGTTCCTCGAC 58.261 55.000 0.00 0.00 37.46 4.20
312 313 2.978156 TTCTCTTGCCCTTTGGATGT 57.022 45.000 0.00 0.00 0.00 3.06
317 318 5.640783 GGAATTTGATTTCTCTTGCCCTTTG 59.359 40.000 0.00 0.00 0.00 2.77
318 319 5.280164 GGGAATTTGATTTCTCTTGCCCTTT 60.280 40.000 0.00 0.00 0.00 3.11
592 594 1.203001 CCACCAAAAGAACTGGCCCTA 60.203 52.381 0.00 0.00 37.48 3.53
594 596 2.049435 CCACCAAAAGAACTGGCCC 58.951 57.895 0.00 0.00 37.48 5.80
598 600 4.389374 TCTAGAAGCCACCAAAAGAACTG 58.611 43.478 0.00 0.00 0.00 3.16
600 602 5.966742 ATTCTAGAAGCCACCAAAAGAAC 57.033 39.130 11.53 0.00 0.00 3.01
601 603 6.151144 GCTTATTCTAGAAGCCACCAAAAGAA 59.849 38.462 11.53 0.00 42.90 2.52
603 605 5.884771 GCTTATTCTAGAAGCCACCAAAAG 58.115 41.667 11.53 5.59 42.90 2.27
613 615 2.708325 AGGGGGCAGCTTATTCTAGAAG 59.292 50.000 11.53 0.00 0.00 2.85
614 616 2.776665 AGGGGGCAGCTTATTCTAGAA 58.223 47.619 7.82 7.82 0.00 2.10
615 617 2.496679 AGGGGGCAGCTTATTCTAGA 57.503 50.000 0.00 0.00 0.00 2.43
616 618 2.303311 GGTAGGGGGCAGCTTATTCTAG 59.697 54.545 0.00 0.00 0.00 2.43
617 619 2.090153 AGGTAGGGGGCAGCTTATTCTA 60.090 50.000 0.00 0.00 0.00 2.10
618 620 1.141185 GGTAGGGGGCAGCTTATTCT 58.859 55.000 0.00 0.00 0.00 2.40
619 621 1.141185 AGGTAGGGGGCAGCTTATTC 58.859 55.000 0.00 0.00 0.00 1.75
620 622 2.339769 CTAGGTAGGGGGCAGCTTATT 58.660 52.381 0.00 0.00 0.00 1.40
621 623 2.031495 CTAGGTAGGGGGCAGCTTAT 57.969 55.000 0.00 0.00 0.00 1.73
622 624 0.763223 GCTAGGTAGGGGGCAGCTTA 60.763 60.000 0.00 0.00 0.00 3.09
623 625 2.073101 GCTAGGTAGGGGGCAGCTT 61.073 63.158 0.00 0.00 0.00 3.74
624 626 2.446802 GCTAGGTAGGGGGCAGCT 60.447 66.667 0.00 0.00 0.00 4.24
625 627 0.763223 TAAGCTAGGTAGGGGGCAGC 60.763 60.000 0.00 0.00 0.00 5.25
626 628 2.031495 ATAAGCTAGGTAGGGGGCAG 57.969 55.000 0.00 0.00 0.00 4.85
627 629 2.090153 AGAATAAGCTAGGTAGGGGGCA 60.090 50.000 0.00 0.00 0.00 5.36
628 630 2.622210 AGAATAAGCTAGGTAGGGGGC 58.378 52.381 0.00 0.00 0.00 5.80
629 631 6.744622 GCTTTTAGAATAAGCTAGGTAGGGGG 60.745 46.154 0.00 0.00 43.56 5.40
630 632 6.231951 GCTTTTAGAATAAGCTAGGTAGGGG 58.768 44.000 0.00 0.00 43.56 4.79
631 633 6.231951 GGCTTTTAGAATAAGCTAGGTAGGG 58.768 44.000 7.43 0.00 45.62 3.53
632 634 6.183361 TGGGCTTTTAGAATAAGCTAGGTAGG 60.183 42.308 7.43 0.00 45.62 3.18
633 635 6.827727 TGGGCTTTTAGAATAAGCTAGGTAG 58.172 40.000 7.43 0.00 45.62 3.18
634 636 6.818281 TGGGCTTTTAGAATAAGCTAGGTA 57.182 37.500 7.43 0.00 45.62 3.08
635 637 5.710409 TGGGCTTTTAGAATAAGCTAGGT 57.290 39.130 7.43 0.00 45.62 3.08
636 638 5.299531 GGTTGGGCTTTTAGAATAAGCTAGG 59.700 44.000 7.43 0.00 45.62 3.02
637 639 5.885912 TGGTTGGGCTTTTAGAATAAGCTAG 59.114 40.000 7.43 0.00 45.62 3.42
638 640 5.822204 TGGTTGGGCTTTTAGAATAAGCTA 58.178 37.500 7.43 0.00 45.62 3.32
639 641 4.672899 TGGTTGGGCTTTTAGAATAAGCT 58.327 39.130 7.43 0.00 45.62 3.74
640 642 5.400066 TTGGTTGGGCTTTTAGAATAAGC 57.600 39.130 0.00 0.00 45.61 3.09
641 643 8.846943 AAATTTGGTTGGGCTTTTAGAATAAG 57.153 30.769 0.00 0.00 0.00 1.73
643 645 9.883142 CATAAATTTGGTTGGGCTTTTAGAATA 57.117 29.630 0.00 0.00 0.00 1.75
644 646 8.382405 ACATAAATTTGGTTGGGCTTTTAGAAT 58.618 29.630 0.00 0.00 0.00 2.40
645 647 7.740805 ACATAAATTTGGTTGGGCTTTTAGAA 58.259 30.769 0.00 0.00 0.00 2.10
646 648 7.309770 ACATAAATTTGGTTGGGCTTTTAGA 57.690 32.000 0.00 0.00 0.00 2.10
647 649 7.977789 AACATAAATTTGGTTGGGCTTTTAG 57.022 32.000 0.00 0.00 0.00 1.85
648 650 8.753497 AAAACATAAATTTGGTTGGGCTTTTA 57.247 26.923 0.00 0.00 0.00 1.52
649 651 7.652524 AAAACATAAATTTGGTTGGGCTTTT 57.347 28.000 0.00 0.00 0.00 2.27
650 652 7.652524 AAAAACATAAATTTGGTTGGGCTTT 57.347 28.000 0.00 1.17 0.00 3.51
651 653 8.214364 TCTAAAAACATAAATTTGGTTGGGCTT 58.786 29.630 0.00 1.84 0.00 4.35
652 654 7.740805 TCTAAAAACATAAATTTGGTTGGGCT 58.259 30.769 0.00 0.00 0.00 5.19
653 655 7.971183 TCTAAAAACATAAATTTGGTTGGGC 57.029 32.000 0.00 0.00 0.00 5.36
654 656 8.503196 GCTTCTAAAAACATAAATTTGGTTGGG 58.497 33.333 0.00 0.00 0.00 4.12
655 657 8.503196 GGCTTCTAAAAACATAAATTTGGTTGG 58.497 33.333 0.00 0.00 0.00 3.77
656 658 9.271828 AGGCTTCTAAAAACATAAATTTGGTTG 57.728 29.630 0.00 0.00 0.00 3.77
669 671 9.926158 AGTCTTAACTACTAGGCTTCTAAAAAC 57.074 33.333 0.00 0.00 32.59 2.43
672 674 9.305555 TCAAGTCTTAACTACTAGGCTTCTAAA 57.694 33.333 0.00 0.00 34.27 1.85
673 675 8.738106 GTCAAGTCTTAACTACTAGGCTTCTAA 58.262 37.037 0.00 0.00 34.27 2.10
674 676 8.108364 AGTCAAGTCTTAACTACTAGGCTTCTA 58.892 37.037 0.00 0.00 34.27 2.10
676 678 7.160547 AGTCAAGTCTTAACTACTAGGCTTC 57.839 40.000 0.00 0.00 34.27 3.86
677 679 8.647256 TTAGTCAAGTCTTAACTACTAGGCTT 57.353 34.615 0.00 0.00 36.80 4.35
682 684 9.917887 AGCCTATTAGTCAAGTCTTAACTACTA 57.082 33.333 0.00 0.00 33.48 1.82
683 685 8.826293 AGCCTATTAGTCAAGTCTTAACTACT 57.174 34.615 0.00 0.00 33.48 2.57
712 714 8.121305 AGAAGCCCAAACAAAATTTTCTTTTT 57.879 26.923 0.00 0.00 0.00 1.94
713 715 7.701539 AGAAGCCCAAACAAAATTTTCTTTT 57.298 28.000 0.00 1.12 0.00 2.27
714 716 8.264347 TCTAGAAGCCCAAACAAAATTTTCTTT 58.736 29.630 0.00 0.00 0.00 2.52
715 717 7.791029 TCTAGAAGCCCAAACAAAATTTTCTT 58.209 30.769 0.00 0.00 0.00 2.52
716 718 7.360113 TCTAGAAGCCCAAACAAAATTTTCT 57.640 32.000 0.00 0.00 0.00 2.52
717 719 8.607441 ATTCTAGAAGCCCAAACAAAATTTTC 57.393 30.769 11.53 0.00 0.00 2.29
719 721 9.710900 CTTATTCTAGAAGCCCAAACAAAATTT 57.289 29.630 11.53 0.00 0.00 1.82
720 722 7.819415 GCTTATTCTAGAAGCCCAAACAAAATT 59.181 33.333 11.53 0.00 42.90 1.82
721 723 7.323420 GCTTATTCTAGAAGCCCAAACAAAAT 58.677 34.615 11.53 0.00 42.90 1.82
722 724 6.687604 GCTTATTCTAGAAGCCCAAACAAAA 58.312 36.000 11.53 0.00 42.90 2.44
724 726 5.897377 GCTTATTCTAGAAGCCCAAACAA 57.103 39.130 11.53 0.00 42.90 2.83
733 735 5.188751 CCCCCTATCCAGCTTATTCTAGAAG 59.811 48.000 11.53 0.00 0.00 2.85
734 736 5.094387 CCCCCTATCCAGCTTATTCTAGAA 58.906 45.833 7.82 7.82 0.00 2.10
735 737 4.689062 CCCCCTATCCAGCTTATTCTAGA 58.311 47.826 0.00 0.00 0.00 2.43
754 756 2.027385 CTTTCAGAATAAGCTGCCCCC 58.973 52.381 0.00 0.00 35.86 5.40
755 757 1.406898 GCTTTCAGAATAAGCTGCCCC 59.593 52.381 0.00 0.00 43.56 5.80
756 758 1.406898 GGCTTTCAGAATAAGCTGCCC 59.593 52.381 6.77 0.00 45.62 5.36
757 759 2.094675 TGGCTTTCAGAATAAGCTGCC 58.905 47.619 6.77 0.00 45.62 4.85
758 760 3.855689 TTGGCTTTCAGAATAAGCTGC 57.144 42.857 6.77 0.00 45.62 5.25
781 1128 1.889170 GGCCAGTTCTTTTGCTAGCTT 59.111 47.619 17.23 0.00 0.00 3.74
785 1132 2.675658 AAGGGCCAGTTCTTTTGCTA 57.324 45.000 6.18 0.00 0.00 3.49
788 1135 4.620982 CACTTTAAGGGCCAGTTCTTTTG 58.379 43.478 6.18 0.00 0.00 2.44
789 1136 3.069586 GCACTTTAAGGGCCAGTTCTTTT 59.930 43.478 8.18 0.00 39.15 2.27
791 1138 2.239400 GCACTTTAAGGGCCAGTTCTT 58.761 47.619 8.18 0.29 39.15 2.52
801 1148 5.532779 GGGAATCCTATTCAGCACTTTAAGG 59.467 44.000 0.00 0.00 0.00 2.69
849 4502 2.101233 GCGGGCTCTCGAAAAGGAC 61.101 63.158 0.00 0.00 0.00 3.85
1021 5648 1.815421 CATGGGTCGCCGAGGAAAG 60.815 63.158 0.00 0.00 0.00 2.62
1136 5763 2.027751 GTCATAGTCCTCGGCGGC 59.972 66.667 7.21 0.00 0.00 6.53
1381 6008 1.700186 GGTCAAGGATGGGGATAGACC 59.300 57.143 0.00 0.00 37.50 3.85
1388 6015 1.216990 AAGCTAGGTCAAGGATGGGG 58.783 55.000 0.00 0.00 0.00 4.96
1488 6115 7.736447 ATTAGTGTAGGCAAATTAGCTGATC 57.264 36.000 0.00 0.00 34.17 2.92
1497 6124 3.450817 GGGCCAAATTAGTGTAGGCAAAT 59.549 43.478 4.39 0.00 46.96 2.32
1499 6126 2.452505 GGGCCAAATTAGTGTAGGCAA 58.547 47.619 4.39 0.00 46.96 4.52
1503 6130 3.261981 ACTCGGGCCAAATTAGTGTAG 57.738 47.619 4.39 0.00 0.00 2.74
1507 6134 2.433436 GTCAACTCGGGCCAAATTAGT 58.567 47.619 4.39 0.00 0.00 2.24
1539 6166 9.796180 CTCCCTACTACAGTAGTAAATGATACT 57.204 37.037 19.11 0.00 44.88 2.12
1540 6167 9.012161 CCTCCCTACTACAGTAGTAAATGATAC 57.988 40.741 19.11 0.00 44.88 2.24
1541 6168 8.168725 CCCTCCCTACTACAGTAGTAAATGATA 58.831 40.741 19.11 0.19 44.88 2.15
1542 6169 7.011382 CCCTCCCTACTACAGTAGTAAATGAT 58.989 42.308 19.11 0.00 44.88 2.45
1684 6311 9.713684 ACATCTTCCTTTCCCAATTCATAAATA 57.286 29.630 0.00 0.00 0.00 1.40
1760 6387 0.727398 GAAGCATCGAAGAAACCGGG 59.273 55.000 6.32 0.00 43.58 5.73
1842 6941 8.647143 TTAGAAGCAAAGAAAGGACAATTTTG 57.353 30.769 0.00 0.00 33.18 2.44
1850 6949 9.520515 AACATAATCTTAGAAGCAAAGAAAGGA 57.479 29.630 0.00 0.00 36.60 3.36
1929 7065 3.436015 CAGATGGAAGCAGTCAGAACTTG 59.564 47.826 0.00 0.00 31.71 3.16
2021 7157 9.846248 CTTACCTTTTTCATGTTAGATTTCTGG 57.154 33.333 0.00 0.00 0.00 3.86
2097 7233 1.610522 GCAGGTGGGCATGATACATTC 59.389 52.381 0.00 0.00 0.00 2.67
2098 7234 1.696063 GCAGGTGGGCATGATACATT 58.304 50.000 0.00 0.00 0.00 2.71
2208 7368 3.247006 ACTCCAGCGAAACGTTGATAT 57.753 42.857 0.00 0.00 40.32 1.63
2209 7369 2.734606 CAACTCCAGCGAAACGTTGATA 59.265 45.455 0.00 0.00 40.32 2.15
2212 7372 0.655733 ACAACTCCAGCGAAACGTTG 59.344 50.000 0.00 0.00 40.41 4.10
2216 7376 3.064207 TGTATGACAACTCCAGCGAAAC 58.936 45.455 0.00 0.00 0.00 2.78
2218 7378 3.610040 ATGTATGACAACTCCAGCGAA 57.390 42.857 0.00 0.00 0.00 4.70
2243 7447 1.210155 GGTGCGCTTTAACAGGCAG 59.790 57.895 9.73 0.00 35.85 4.85
2273 7477 7.063780 GGCATTTGACAAAAGGAAAGATGTATG 59.936 37.037 4.41 0.00 0.00 2.39
2344 7548 9.406113 GAGTATTTCTTTACAGAGGGAGTACTA 57.594 37.037 0.00 0.00 0.00 1.82
2345 7549 7.342541 GGAGTATTTCTTTACAGAGGGAGTACT 59.657 40.741 0.00 0.00 0.00 2.73
2346 7550 7.417683 GGGAGTATTTCTTTACAGAGGGAGTAC 60.418 44.444 0.00 0.00 0.00 2.73
2347 7551 6.610425 GGGAGTATTTCTTTACAGAGGGAGTA 59.390 42.308 0.00 0.00 0.00 2.59
2348 7552 5.425862 GGGAGTATTTCTTTACAGAGGGAGT 59.574 44.000 0.00 0.00 0.00 3.85
2349 7553 5.663556 AGGGAGTATTTCTTTACAGAGGGAG 59.336 44.000 0.00 0.00 0.00 4.30
2350 7554 5.600749 AGGGAGTATTTCTTTACAGAGGGA 58.399 41.667 0.00 0.00 0.00 4.20
2351 7555 5.163290 GGAGGGAGTATTTCTTTACAGAGGG 60.163 48.000 0.00 0.00 0.00 4.30
2352 7556 5.452077 CGGAGGGAGTATTTCTTTACAGAGG 60.452 48.000 0.00 0.00 0.00 3.69
2353 7557 5.127356 ACGGAGGGAGTATTTCTTTACAGAG 59.873 44.000 0.00 0.00 0.00 3.35
2354 7558 5.021458 ACGGAGGGAGTATTTCTTTACAGA 58.979 41.667 0.00 0.00 0.00 3.41
2355 7559 5.340439 ACGGAGGGAGTATTTCTTTACAG 57.660 43.478 0.00 0.00 0.00 2.74
2356 7560 4.161001 GGACGGAGGGAGTATTTCTTTACA 59.839 45.833 0.00 0.00 0.00 2.41
2357 7561 4.442612 GGGACGGAGGGAGTATTTCTTTAC 60.443 50.000 0.00 0.00 0.00 2.01
2358 7562 3.708121 GGGACGGAGGGAGTATTTCTTTA 59.292 47.826 0.00 0.00 0.00 1.85
2359 7563 2.504585 GGGACGGAGGGAGTATTTCTTT 59.495 50.000 0.00 0.00 0.00 2.52
2360 7564 2.117051 GGGACGGAGGGAGTATTTCTT 58.883 52.381 0.00 0.00 0.00 2.52
2361 7565 1.007963 TGGGACGGAGGGAGTATTTCT 59.992 52.381 0.00 0.00 0.00 2.52
2362 7566 1.492764 TGGGACGGAGGGAGTATTTC 58.507 55.000 0.00 0.00 0.00 2.17
2363 7567 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
2364 7568 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
2365 7569 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2366 7570 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2367 7571 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2368 7572 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2369 7573 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2370 7574 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2371 7575 2.488153 GTCAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2372 7576 3.412386 AGTCAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 33.84 4.63
2373 7577 3.502123 AGTCAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 33.84 4.69
2374 7578 5.001232 TCTAAGTCAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 33.84 4.79
2375 7579 6.743575 ATCTAAGTCAAGAATTTTGGGACG 57.256 37.500 0.00 0.00 33.84 4.79
2376 7580 8.360390 ACAAATCTAAGTCAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2377 7581 8.477419 ACAAATCTAAGTCAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2378 7582 8.579863 AGACAAATCTAAGTCAAGAATTTTGGG 58.420 33.333 0.00 0.00 37.23 4.12
2410 7614 9.740239 GTCACGTTTTAGTATTAGATACATCCA 57.260 33.333 0.00 0.00 38.21 3.41
2411 7615 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
2422 7626 8.804743 CGAATGTATCAAGTCACGTTTTAGTAT 58.195 33.333 0.00 0.00 0.00 2.12
2423 7627 7.809331 ACGAATGTATCAAGTCACGTTTTAGTA 59.191 33.333 0.00 0.00 0.00 1.82
2424 7628 6.643770 ACGAATGTATCAAGTCACGTTTTAGT 59.356 34.615 0.00 0.00 0.00 2.24
2425 7629 7.045725 ACGAATGTATCAAGTCACGTTTTAG 57.954 36.000 0.00 0.00 0.00 1.85
2426 7630 8.692110 ATACGAATGTATCAAGTCACGTTTTA 57.308 30.769 0.00 0.00 36.56 1.52
2427 7631 5.917541 ACGAATGTATCAAGTCACGTTTT 57.082 34.783 0.00 0.00 0.00 2.43
2428 7632 7.591006 AATACGAATGTATCAAGTCACGTTT 57.409 32.000 0.00 0.00 40.42 3.60
2429 7633 7.591006 AAATACGAATGTATCAAGTCACGTT 57.409 32.000 0.00 0.00 40.42 3.99
2430 7634 8.186163 TCTAAATACGAATGTATCAAGTCACGT 58.814 33.333 0.00 0.00 40.42 4.49
2431 7635 8.469902 GTCTAAATACGAATGTATCAAGTCACG 58.530 37.037 0.00 0.00 40.42 4.35
2432 7636 9.297586 TGTCTAAATACGAATGTATCAAGTCAC 57.702 33.333 0.00 0.00 40.42 3.67
2433 7637 9.863845 TTGTCTAAATACGAATGTATCAAGTCA 57.136 29.630 0.00 0.00 40.42 3.41
2454 7658 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2455 7659 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2456 7660 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2457 7661 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2461 8041 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2466 8046 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2467 8047 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2470 8050 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2477 8057 1.854939 TCTTATACTCCCTCCGTCCCA 59.145 52.381 0.00 0.00 0.00 4.37
2480 8166 2.584236 TGCTCTTATACTCCCTCCGTC 58.416 52.381 0.00 0.00 0.00 4.79
2482 8168 4.608948 AAATGCTCTTATACTCCCTCCG 57.391 45.455 0.00 0.00 0.00 4.63
2509 8195 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2522 8208 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2523 8209 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2524 8210 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2525 8211 7.977853 TCTCCGTAAAGAAATATAAGAGCGTTT 59.022 33.333 0.00 0.00 0.00 3.60
2526 8212 7.486647 TCTCCGTAAAGAAATATAAGAGCGTT 58.513 34.615 0.00 0.00 0.00 4.84
2527 8213 7.013083 TCTCTCCGTAAAGAAATATAAGAGCGT 59.987 37.037 0.00 0.00 0.00 5.07
2528 8214 7.361127 TCTCTCCGTAAAGAAATATAAGAGCG 58.639 38.462 0.00 0.00 0.00 5.03
2529 8215 8.354426 ACTCTCTCCGTAAAGAAATATAAGAGC 58.646 37.037 0.00 0.00 0.00 4.09
2538 8224 9.635520 CTAACAAATACTCTCTCCGTAAAGAAA 57.364 33.333 0.00 0.00 0.00 2.52
2539 8225 9.017509 TCTAACAAATACTCTCTCCGTAAAGAA 57.982 33.333 0.00 0.00 0.00 2.52
2540 8226 8.457261 GTCTAACAAATACTCTCTCCGTAAAGA 58.543 37.037 0.00 0.00 0.00 2.52
2541 8227 8.460428 AGTCTAACAAATACTCTCTCCGTAAAG 58.540 37.037 0.00 0.00 0.00 1.85
2542 8228 8.242053 CAGTCTAACAAATACTCTCTCCGTAAA 58.758 37.037 0.00 0.00 0.00 2.01
2543 8229 7.392673 ACAGTCTAACAAATACTCTCTCCGTAA 59.607 37.037 0.00 0.00 0.00 3.18
2544 8230 6.883217 ACAGTCTAACAAATACTCTCTCCGTA 59.117 38.462 0.00 0.00 0.00 4.02
2547 8233 7.339976 ACCTACAGTCTAACAAATACTCTCTCC 59.660 40.741 0.00 0.00 0.00 3.71
2548 8234 8.185505 CACCTACAGTCTAACAAATACTCTCTC 58.814 40.741 0.00 0.00 0.00 3.20
2551 8237 6.210784 TGCACCTACAGTCTAACAAATACTCT 59.789 38.462 0.00 0.00 0.00 3.24
2552 8238 6.395629 TGCACCTACAGTCTAACAAATACTC 58.604 40.000 0.00 0.00 0.00 2.59
2553 8239 6.354794 TGCACCTACAGTCTAACAAATACT 57.645 37.500 0.00 0.00 0.00 2.12
2554 8240 5.581085 CCTGCACCTACAGTCTAACAAATAC 59.419 44.000 0.00 0.00 35.83 1.89
2561 8247 5.306160 AGTTTTACCTGCACCTACAGTCTAA 59.694 40.000 0.00 0.00 35.83 2.10
2578 8264 8.699749 GTGAAAGCAACCATCATTAAGTTTTAC 58.300 33.333 0.00 0.00 0.00 2.01
2730 8421 1.318158 AAGCATGCCCACTTAGCTGC 61.318 55.000 15.66 0.00 35.42 5.25
2753 8444 9.601217 TTGACCTTTAGAATGCTTCTAGTATTC 57.399 33.333 8.80 8.80 44.37 1.75
2800 8491 3.009363 ACATGGTCATCATCCAGTTCACA 59.991 43.478 0.00 0.00 38.42 3.58
2801 8492 3.614092 ACATGGTCATCATCCAGTTCAC 58.386 45.455 0.00 0.00 38.42 3.18
2802 8493 4.384098 GGTACATGGTCATCATCCAGTTCA 60.384 45.833 0.00 0.00 38.42 3.18
2803 8494 4.130118 GGTACATGGTCATCATCCAGTTC 58.870 47.826 0.00 0.00 38.42 3.01
2804 8495 3.782523 AGGTACATGGTCATCATCCAGTT 59.217 43.478 0.00 0.00 38.42 3.16
2805 8496 3.135348 CAGGTACATGGTCATCATCCAGT 59.865 47.826 0.00 0.00 38.42 4.00
2806 8497 3.495629 CCAGGTACATGGTCATCATCCAG 60.496 52.174 18.47 0.00 38.42 3.86
2809 8500 3.389329 ACTCCAGGTACATGGTCATCATC 59.611 47.826 24.88 0.00 41.43 2.92
2810 8501 3.387962 ACTCCAGGTACATGGTCATCAT 58.612 45.455 24.88 4.16 41.43 2.45
2811 8502 2.766263 GACTCCAGGTACATGGTCATCA 59.234 50.000 24.88 5.61 41.43 3.07
2812 8503 2.766263 TGACTCCAGGTACATGGTCATC 59.234 50.000 24.88 19.52 41.43 2.92
2813 8504 2.501723 GTGACTCCAGGTACATGGTCAT 59.498 50.000 24.88 12.32 41.43 3.06
2834 11986 5.337894 CCAGTGGAGCATATTATAGACCTGG 60.338 48.000 1.68 0.00 0.00 4.45
2853 12005 1.601759 CTTGTCCCTGCCACCAGTG 60.602 63.158 0.00 0.00 37.38 3.66
2855 12007 1.601759 CACTTGTCCCTGCCACCAG 60.602 63.158 0.00 0.00 38.85 4.00
2866 12026 9.683069 AATGAGAAAATACATCAAACACTTGTC 57.317 29.630 0.00 0.00 33.94 3.18
2898 12058 8.565896 AATATCTAAGCACACACTGATTTGAA 57.434 30.769 0.00 0.00 34.41 2.69
2940 12100 8.550376 CGCCAATAGCTGCAAAAATAAATAAAT 58.450 29.630 1.02 0.00 40.39 1.40
3002 12162 5.183331 TGCTATTCCTGATACTACGATGGTC 59.817 44.000 0.00 0.00 0.00 4.02
3008 12168 7.148641 ACATCTTTGCTATTCCTGATACTACG 58.851 38.462 0.00 0.00 0.00 3.51
3106 12266 5.932883 TGCCAACACGTATGTAATAACTTCA 59.067 36.000 0.00 0.00 38.45 3.02
3113 12273 4.257731 TGTCATGCCAACACGTATGTAAT 58.742 39.130 0.00 0.00 38.45 1.89
3116 12276 2.177394 TGTCATGCCAACACGTATGT 57.823 45.000 0.00 0.00 42.46 2.29
3117 12277 2.728846 GCTTGTCATGCCAACACGTATG 60.729 50.000 0.00 0.00 0.00 2.39
3118 12278 1.468520 GCTTGTCATGCCAACACGTAT 59.531 47.619 0.00 0.00 0.00 3.06
3163 12326 7.360101 GGCCAACTATTAACATATAACAGCTCG 60.360 40.741 0.00 0.00 0.00 5.03
3166 12329 7.745620 AGGCCAACTATTAACATATAACAGC 57.254 36.000 5.01 0.00 0.00 4.40
3172 12335 8.714906 ACTACAGAAGGCCAACTATTAACATAT 58.285 33.333 5.01 0.00 0.00 1.78
3186 12349 2.485657 GCAGGGATAACTACAGAAGGCC 60.486 54.545 0.00 0.00 0.00 5.19
3286 12457 5.842339 AGAATCATACCCAAGGAAACCATT 58.158 37.500 0.00 0.00 0.00 3.16
3298 12469 8.190784 CAGGTTCAATTGTTTAGAATCATACCC 58.809 37.037 5.13 0.00 0.00 3.69
3300 12471 8.243426 TGCAGGTTCAATTGTTTAGAATCATAC 58.757 33.333 5.13 0.00 0.00 2.39
3517 12688 7.033185 CCATTACAGTTACCATAACCTTTTGC 58.967 38.462 0.00 0.00 0.00 3.68
3546 12717 2.671914 GCATTGAGATTGCAAAGCGGAA 60.672 45.455 1.71 0.00 37.27 4.30
3573 12744 1.661112 GCGATGGCAAGTAGAAGTGTC 59.339 52.381 0.00 0.00 39.62 3.67
3592 12763 0.240945 CCAACAATCACCTTCCGTGC 59.759 55.000 0.00 0.00 42.69 5.34
3609 12781 6.433093 GGCTACTATTTTTCTTTGTTCTCCCA 59.567 38.462 0.00 0.00 0.00 4.37
3611 12783 6.543736 CGGCTACTATTTTTCTTTGTTCTCC 58.456 40.000 0.00 0.00 0.00 3.71
3618 12790 3.181510 CGCTGCGGCTACTATTTTTCTTT 60.182 43.478 17.03 0.00 36.09 2.52
3661 12833 4.951715 AGATGCAAATTCCAATGAGTAGCA 59.048 37.500 0.00 0.00 0.00 3.49
3669 12841 7.592885 ACAGCTTATAGATGCAAATTCCAAT 57.407 32.000 0.00 0.00 34.41 3.16
3674 12846 8.960591 ACAACTTACAGCTTATAGATGCAAATT 58.039 29.630 0.00 0.00 34.41 1.82
3675 12847 8.400947 CACAACTTACAGCTTATAGATGCAAAT 58.599 33.333 0.00 0.00 34.41 2.32
3676 12848 7.606073 TCACAACTTACAGCTTATAGATGCAAA 59.394 33.333 0.00 0.00 34.41 3.68
3677 12849 7.064609 GTCACAACTTACAGCTTATAGATGCAA 59.935 37.037 0.00 0.00 34.41 4.08
3678 12850 6.535150 GTCACAACTTACAGCTTATAGATGCA 59.465 38.462 0.00 0.00 34.41 3.96
3679 12851 6.758886 AGTCACAACTTACAGCTTATAGATGC 59.241 38.462 0.00 0.00 30.07 3.91
3680 12852 7.761704 ACAGTCACAACTTACAGCTTATAGATG 59.238 37.037 0.00 0.00 33.45 2.90
3681 12853 7.841956 ACAGTCACAACTTACAGCTTATAGAT 58.158 34.615 0.00 0.00 31.71 1.98
3682 12854 7.228314 ACAGTCACAACTTACAGCTTATAGA 57.772 36.000 0.00 0.00 31.71 1.98
3683 12855 7.891183 AACAGTCACAACTTACAGCTTATAG 57.109 36.000 0.00 0.00 31.71 1.31
3684 12856 7.929245 TGAAACAGTCACAACTTACAGCTTATA 59.071 33.333 0.00 0.00 31.71 0.98
3685 12857 6.765989 TGAAACAGTCACAACTTACAGCTTAT 59.234 34.615 0.00 0.00 31.71 1.73
3686 12858 6.110033 TGAAACAGTCACAACTTACAGCTTA 58.890 36.000 0.00 0.00 31.71 3.09
3687 12859 4.941263 TGAAACAGTCACAACTTACAGCTT 59.059 37.500 0.00 0.00 31.71 3.74
3688 12860 4.513442 TGAAACAGTCACAACTTACAGCT 58.487 39.130 0.00 0.00 31.71 4.24
3689 12861 4.875544 TGAAACAGTCACAACTTACAGC 57.124 40.909 0.00 0.00 31.71 4.40
3690 12862 5.008019 AGCATGAAACAGTCACAACTTACAG 59.992 40.000 0.00 0.00 39.72 2.74
3691 12863 4.881273 AGCATGAAACAGTCACAACTTACA 59.119 37.500 0.00 0.00 39.72 2.41
3692 12864 5.424121 AGCATGAAACAGTCACAACTTAC 57.576 39.130 0.00 0.00 39.72 2.34
3693 12865 7.744087 ATAAGCATGAAACAGTCACAACTTA 57.256 32.000 0.00 0.00 39.72 2.24
3724 12896 3.947834 ACCACACGGTAGTATAGTACCAC 59.052 47.826 28.48 9.79 46.71 4.16
3738 12910 2.095213 CGGATACAATTGAACCACACGG 59.905 50.000 13.59 0.00 38.77 4.94
3739 12911 2.739913 ACGGATACAATTGAACCACACG 59.260 45.455 13.59 9.31 0.00 4.49
3740 12912 4.759516 AACGGATACAATTGAACCACAC 57.240 40.909 13.59 0.00 0.00 3.82
3741 12913 6.539464 GGTATAACGGATACAATTGAACCACA 59.461 38.462 13.59 1.27 42.11 4.17
3742 12914 6.764560 AGGTATAACGGATACAATTGAACCAC 59.235 38.462 13.59 5.97 42.11 4.16
3743 12915 6.764085 CAGGTATAACGGATACAATTGAACCA 59.236 38.462 13.59 0.00 42.11 3.67
3744 12916 6.987992 TCAGGTATAACGGATACAATTGAACC 59.012 38.462 13.59 10.78 42.11 3.62
3745 12917 8.603242 ATCAGGTATAACGGATACAATTGAAC 57.397 34.615 13.59 2.77 42.11 3.18
3746 12918 8.425703 TGATCAGGTATAACGGATACAATTGAA 58.574 33.333 13.59 0.00 42.11 2.69
3747 12919 7.958088 TGATCAGGTATAACGGATACAATTGA 58.042 34.615 13.59 10.54 42.11 2.57
3748 12920 8.495949 GTTGATCAGGTATAACGGATACAATTG 58.504 37.037 3.20 3.24 42.11 2.32
3749 12921 7.660208 GGTTGATCAGGTATAACGGATACAATT 59.340 37.037 3.20 0.00 42.11 2.32
3751 12923 6.463331 GGGTTGATCAGGTATAACGGATACAA 60.463 42.308 3.20 7.34 42.11 2.41
3752 12924 5.011329 GGGTTGATCAGGTATAACGGATACA 59.989 44.000 3.20 1.97 42.11 2.29
3753 12925 5.245526 AGGGTTGATCAGGTATAACGGATAC 59.754 44.000 3.20 0.00 39.93 2.24
3754 12926 5.245301 CAGGGTTGATCAGGTATAACGGATA 59.755 44.000 3.20 0.00 0.00 2.59
3755 12927 4.040461 CAGGGTTGATCAGGTATAACGGAT 59.960 45.833 2.80 2.80 0.00 4.18
3756 12928 3.386726 CAGGGTTGATCAGGTATAACGGA 59.613 47.826 0.00 0.00 0.00 4.69
3757 12929 3.386726 TCAGGGTTGATCAGGTATAACGG 59.613 47.826 0.00 0.00 0.00 4.44
3758 12930 4.665833 TCAGGGTTGATCAGGTATAACG 57.334 45.455 0.00 0.00 0.00 3.18
3759 12931 7.339466 ACAAAATCAGGGTTGATCAGGTATAAC 59.661 37.037 0.00 0.00 43.20 1.89
3760 12932 7.410174 ACAAAATCAGGGTTGATCAGGTATAA 58.590 34.615 0.00 0.00 43.20 0.98
3761 12933 6.969043 ACAAAATCAGGGTTGATCAGGTATA 58.031 36.000 0.00 0.00 43.20 1.47
3762 12934 5.831103 ACAAAATCAGGGTTGATCAGGTAT 58.169 37.500 0.00 0.00 43.20 2.73
3763 12935 5.255397 ACAAAATCAGGGTTGATCAGGTA 57.745 39.130 0.00 0.00 43.20 3.08
3764 12936 4.118168 ACAAAATCAGGGTTGATCAGGT 57.882 40.909 0.00 0.00 43.20 4.00
3765 12937 4.768968 AGAACAAAATCAGGGTTGATCAGG 59.231 41.667 0.00 0.00 43.20 3.86
3766 12938 5.972107 AGAACAAAATCAGGGTTGATCAG 57.028 39.130 0.00 0.00 43.20 2.90
3767 12939 5.509501 GCAAGAACAAAATCAGGGTTGATCA 60.510 40.000 0.00 0.00 43.20 2.92
3768 12940 4.925646 GCAAGAACAAAATCAGGGTTGATC 59.074 41.667 0.00 0.00 43.20 2.92
3769 12941 4.590222 AGCAAGAACAAAATCAGGGTTGAT 59.410 37.500 0.00 0.00 45.92 2.57
3770 12942 3.960102 AGCAAGAACAAAATCAGGGTTGA 59.040 39.130 0.00 0.00 37.81 3.18
3771 12943 4.326504 AGCAAGAACAAAATCAGGGTTG 57.673 40.909 0.00 0.00 0.00 3.77
3846 13018 0.980231 AGGGAGTGCTGATGAGGTCC 60.980 60.000 0.00 0.00 0.00 4.46
3863 13035 1.799933 ATCCAGGAGTTAGAGGCAGG 58.200 55.000 0.00 0.00 0.00 4.85
3865 13037 2.119495 GGAATCCAGGAGTTAGAGGCA 58.881 52.381 0.00 0.00 0.00 4.75
3866 13038 1.418264 GGGAATCCAGGAGTTAGAGGC 59.582 57.143 0.09 0.00 0.00 4.70
3867 13039 2.764269 TGGGAATCCAGGAGTTAGAGG 58.236 52.381 0.09 0.00 38.32 3.69
3882 13054 0.759959 TAAGAACACGGCACTGGGAA 59.240 50.000 0.00 0.00 0.00 3.97
3893 13065 5.164606 TGCTTTTTCTCCGTTAAGAACAC 57.835 39.130 0.00 0.00 35.06 3.32
3894 13066 5.278266 CCATGCTTTTTCTCCGTTAAGAACA 60.278 40.000 0.00 0.00 35.06 3.18
3895 13067 5.154222 CCATGCTTTTTCTCCGTTAAGAAC 58.846 41.667 0.00 0.00 35.06 3.01
3896 13068 4.217550 CCCATGCTTTTTCTCCGTTAAGAA 59.782 41.667 0.00 0.00 33.50 2.52
3897 13069 3.756434 CCCATGCTTTTTCTCCGTTAAGA 59.244 43.478 0.00 0.00 0.00 2.10
3898 13070 3.756434 TCCCATGCTTTTTCTCCGTTAAG 59.244 43.478 0.00 0.00 0.00 1.85
3899 13071 3.504520 GTCCCATGCTTTTTCTCCGTTAA 59.495 43.478 0.00 0.00 0.00 2.01
3900 13072 3.078837 GTCCCATGCTTTTTCTCCGTTA 58.921 45.455 0.00 0.00 0.00 3.18
3901 13073 1.886542 GTCCCATGCTTTTTCTCCGTT 59.113 47.619 0.00 0.00 0.00 4.44
3902 13074 1.534729 GTCCCATGCTTTTTCTCCGT 58.465 50.000 0.00 0.00 0.00 4.69
3903 13075 0.447801 CGTCCCATGCTTTTTCTCCG 59.552 55.000 0.00 0.00 0.00 4.63
3904 13076 1.468914 GACGTCCCATGCTTTTTCTCC 59.531 52.381 3.51 0.00 0.00 3.71
3905 13077 1.468914 GGACGTCCCATGCTTTTTCTC 59.531 52.381 24.75 0.00 34.14 2.87
3906 13078 1.534729 GGACGTCCCATGCTTTTTCT 58.465 50.000 24.75 0.00 34.14 2.52
3918 13090 1.153549 GAGCATCTGTGGGACGTCC 60.154 63.158 27.04 27.04 0.00 4.79
3919 13091 0.176680 ATGAGCATCTGTGGGACGTC 59.823 55.000 7.13 7.13 34.92 4.34
3920 13092 0.176680 GATGAGCATCTGTGGGACGT 59.823 55.000 3.29 0.00 35.04 4.34
3921 13093 0.531532 GGATGAGCATCTGTGGGACG 60.532 60.000 10.04 0.00 37.92 4.79
3922 13094 0.543277 TGGATGAGCATCTGTGGGAC 59.457 55.000 10.04 0.00 37.92 4.46
3923 13095 0.835276 CTGGATGAGCATCTGTGGGA 59.165 55.000 10.04 0.00 37.92 4.37
3924 13096 0.835276 TCTGGATGAGCATCTGTGGG 59.165 55.000 10.04 0.00 37.92 4.61
3925 13097 2.704464 TTCTGGATGAGCATCTGTGG 57.296 50.000 10.04 0.12 37.92 4.17
3926 13098 3.622163 GTCTTTCTGGATGAGCATCTGTG 59.378 47.826 10.04 2.16 37.92 3.66
3927 13099 3.262660 TGTCTTTCTGGATGAGCATCTGT 59.737 43.478 10.04 0.00 37.92 3.41
3928 13100 3.870274 TGTCTTTCTGGATGAGCATCTG 58.130 45.455 10.04 4.57 37.92 2.90
3929 13101 4.452825 CATGTCTTTCTGGATGAGCATCT 58.547 43.478 10.04 0.00 37.92 2.90
3930 13102 3.564644 CCATGTCTTTCTGGATGAGCATC 59.435 47.826 1.86 1.86 34.24 3.91
3931 13103 3.552875 CCATGTCTTTCTGGATGAGCAT 58.447 45.455 0.00 0.00 34.24 3.79
3953 13125 6.123651 TCTGACTTCTCTCTTAGGGACATAC 58.876 44.000 0.00 0.00 0.00 2.39
3966 13138 4.226394 TGACTAGGTAGCTCTGACTTCTCT 59.774 45.833 0.00 0.00 0.00 3.10
3993 13165 3.742433 ACAATTGGCCAAAAACATCGA 57.258 38.095 24.71 0.00 0.00 3.59
3997 13169 4.326826 TGTCAAACAATTGGCCAAAAACA 58.673 34.783 24.71 15.04 40.52 2.83
4058 13232 1.675483 TGCAAGCAACACGACATCTTT 59.325 42.857 0.00 0.00 0.00 2.52
4060 13234 0.870393 CTGCAAGCAACACGACATCT 59.130 50.000 0.00 0.00 0.00 2.90
4073 13247 1.242076 CCAAAGACCCTCACTGCAAG 58.758 55.000 0.00 0.00 42.29 4.01
4074 13248 0.550914 ACCAAAGACCCTCACTGCAA 59.449 50.000 0.00 0.00 0.00 4.08
4075 13249 0.550914 AACCAAAGACCCTCACTGCA 59.449 50.000 0.00 0.00 0.00 4.41
4076 13250 0.954452 CAACCAAAGACCCTCACTGC 59.046 55.000 0.00 0.00 0.00 4.40
4077 13251 1.133792 ACCAACCAAAGACCCTCACTG 60.134 52.381 0.00 0.00 0.00 3.66
4078 13252 1.222567 ACCAACCAAAGACCCTCACT 58.777 50.000 0.00 0.00 0.00 3.41
4079 13253 1.681264 CAACCAACCAAAGACCCTCAC 59.319 52.381 0.00 0.00 0.00 3.51
4080 13254 1.286553 ACAACCAACCAAAGACCCTCA 59.713 47.619 0.00 0.00 0.00 3.86
4081 13255 1.954382 GACAACCAACCAAAGACCCTC 59.046 52.381 0.00 0.00 0.00 4.30
4082 13256 1.411074 GGACAACCAACCAAAGACCCT 60.411 52.381 0.00 0.00 35.97 4.34
4083 13257 1.037493 GGACAACCAACCAAAGACCC 58.963 55.000 0.00 0.00 35.97 4.46
4084 13258 1.770294 TGGACAACCAACCAAAGACC 58.230 50.000 0.00 0.00 43.91 3.85
4095 13269 1.465777 CCGATTTTACCGTGGACAACC 59.534 52.381 0.00 0.00 0.00 3.77
4130 13304 5.648033 ATTGTCATCGTCATCATTTCTCG 57.352 39.130 0.00 0.00 0.00 4.04
4143 13317 0.095245 AGCGCACGAAATTGTCATCG 59.905 50.000 11.47 0.00 44.33 3.84
4151 13325 2.810650 CCTACTCTTAGCGCACGAAAT 58.189 47.619 11.47 0.00 0.00 2.17
4152 13326 1.734707 GCCTACTCTTAGCGCACGAAA 60.735 52.381 11.47 0.00 0.00 3.46
4153 13327 0.179145 GCCTACTCTTAGCGCACGAA 60.179 55.000 11.47 0.00 0.00 3.85
4154 13328 1.432251 GCCTACTCTTAGCGCACGA 59.568 57.895 11.47 1.07 0.00 4.35
4155 13329 1.939785 CGCCTACTCTTAGCGCACG 60.940 63.158 11.47 0.00 43.72 5.34
4156 13330 3.999051 CGCCTACTCTTAGCGCAC 58.001 61.111 11.47 0.00 43.72 5.34
4160 13334 1.606903 TCCTAGCGCCTACTCTTAGC 58.393 55.000 2.29 0.00 0.00 3.09
4161 13335 3.413327 TCATCCTAGCGCCTACTCTTAG 58.587 50.000 2.29 0.00 0.00 2.18
4162 13336 3.503800 TCATCCTAGCGCCTACTCTTA 57.496 47.619 2.29 0.00 0.00 2.10
4163 13337 2.366640 TCATCCTAGCGCCTACTCTT 57.633 50.000 2.29 0.00 0.00 2.85
4164 13338 2.595750 ATCATCCTAGCGCCTACTCT 57.404 50.000 2.29 0.00 0.00 3.24
4165 13339 2.094442 GGAATCATCCTAGCGCCTACTC 60.094 54.545 2.29 0.00 42.93 2.59
4166 13340 1.896465 GGAATCATCCTAGCGCCTACT 59.104 52.381 2.29 0.00 42.93 2.57
4167 13341 1.066787 GGGAATCATCCTAGCGCCTAC 60.067 57.143 2.29 0.00 45.77 3.18
4168 13342 1.267121 GGGAATCATCCTAGCGCCTA 58.733 55.000 2.29 0.00 45.77 3.93
4169 13343 1.484444 GGGGAATCATCCTAGCGCCT 61.484 60.000 2.29 0.00 45.77 5.52
4170 13344 1.003233 GGGGAATCATCCTAGCGCC 60.003 63.158 2.29 0.00 45.77 6.53
4171 13345 1.205893 CTAGGGGAATCATCCTAGCGC 59.794 57.143 13.28 0.00 43.99 5.92
4172 13346 1.827969 CCTAGGGGAATCATCCTAGCG 59.172 57.143 17.71 10.73 46.92 4.26
4173 13347 2.835156 GACCTAGGGGAATCATCCTAGC 59.165 54.545 14.81 6.93 46.92 3.42
4175 13349 4.852991 AAGACCTAGGGGAATCATCCTA 57.147 45.455 14.81 2.54 45.77 2.94
4176 13350 3.734344 AAGACCTAGGGGAATCATCCT 57.266 47.619 14.81 0.51 45.77 3.24
4177 13351 3.977326 AGAAAGACCTAGGGGAATCATCC 59.023 47.826 14.81 0.00 45.77 3.51
4178 13352 6.353404 CTAGAAAGACCTAGGGGAATCATC 57.647 45.833 14.81 0.00 34.06 2.92
4246 13420 2.964464 AGGACTAGTAGATCGGACGAGA 59.036 50.000 14.69 0.00 0.00 4.04
4470 13645 4.934602 CCTGACAGATCAAGTTCTTCTTCC 59.065 45.833 3.32 0.00 33.30 3.46
4516 13691 4.853924 AAACAGCAATCCATCGAGTTTT 57.146 36.364 0.00 0.00 0.00 2.43
4554 13729 3.057526 GCGAGACATGGCTAAAAGGTTTT 60.058 43.478 0.00 0.00 0.00 2.43
4656 13831 1.344114 TCACCCAGGCAAAAGAATTGC 59.656 47.619 4.64 4.64 44.22 3.56
4706 13882 1.590238 CTGCTGCGTTCCTAAAGATCG 59.410 52.381 0.00 0.00 40.06 3.69
4723 13899 5.050091 CGTCATATTCTTCCATAACCACTGC 60.050 44.000 0.00 0.00 0.00 4.40
4754 13930 2.098770 AGCTTATACTGTCGAACGTCCC 59.901 50.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.