Multiple sequence alignment - TraesCS3D01G267200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G267200 chr3D 100.000 6329 0 0 1 6329 371091853 371098181 0.000000e+00 11688.0
1 TraesCS3D01G267200 chr3D 94.186 86 4 1 4844 4928 39333777 39333692 5.150000e-26 130.0
2 TraesCS3D01G267200 chr3A 90.662 4637 184 115 322 4846 492035486 492039985 0.000000e+00 5934.0
3 TraesCS3D01G267200 chr3A 83.510 661 55 25 4973 5611 492040001 492040629 9.210000e-158 568.0
4 TraesCS3D01G267200 chr3A 92.070 227 12 1 5841 6067 492040883 492041103 1.320000e-81 315.0
5 TraesCS3D01G267200 chr3A 84.713 314 32 10 28 327 492034720 492035031 3.710000e-77 300.0
6 TraesCS3D01G267200 chr3B 91.829 4014 179 56 28 3967 482252175 482256113 0.000000e+00 5457.0
7 TraesCS3D01G267200 chr3B 89.050 895 45 17 3971 4846 482256148 482257008 0.000000e+00 1061.0
8 TraesCS3D01G267200 chr3B 85.912 866 69 29 4973 5824 482257024 482257850 0.000000e+00 874.0
9 TraesCS3D01G267200 chr3B 97.619 126 3 0 5841 5966 482257834 482257959 3.840000e-52 217.0
10 TraesCS3D01G267200 chr3B 94.286 140 7 1 6063 6201 443389574 443389435 4.970000e-51 213.0
11 TraesCS3D01G267200 chr3B 91.429 140 11 1 6063 6201 730666315 730666454 2.330000e-44 191.0
12 TraesCS3D01G267200 chr3B 95.714 70 3 0 6260 6329 482258604 482258673 5.190000e-21 113.0
13 TraesCS3D01G267200 chr3B 97.297 37 1 0 6014 6050 482257954 482257990 5.300000e-06 63.9
14 TraesCS3D01G267200 chr6B 94.964 139 7 0 6063 6201 564998249 564998111 1.070000e-52 219.0
15 TraesCS3D01G267200 chr6A 95.000 140 4 2 6063 6201 260429524 260429387 3.840000e-52 217.0
16 TraesCS3D01G267200 chr6A 91.304 92 5 3 4845 4935 68511338 68511249 8.620000e-24 122.0
17 TraesCS3D01G267200 chr7A 94.286 140 7 1 6063 6201 516875469 516875608 4.970000e-51 213.0
18 TraesCS3D01G267200 chr7A 94.253 87 4 1 4844 4929 653595819 653595733 1.430000e-26 132.0
19 TraesCS3D01G267200 chr2B 94.203 138 8 0 6063 6200 674044266 674044403 1.790000e-50 211.0
20 TraesCS3D01G267200 chr4B 94.161 137 8 0 6065 6201 310957227 310957091 6.430000e-50 209.0
21 TraesCS3D01G267200 chr4B 94.186 86 4 1 4844 4928 649614237 649614322 5.150000e-26 130.0
22 TraesCS3D01G267200 chr1B 92.517 147 10 1 6063 6208 328158345 328158199 6.430000e-50 209.0
23 TraesCS3D01G267200 chr1B 93.333 90 5 1 4840 4928 230031894 230031805 1.430000e-26 132.0
24 TraesCS3D01G267200 chr7D 93.333 90 5 1 4841 4929 159658153 159658064 1.430000e-26 132.0
25 TraesCS3D01G267200 chr2D 92.391 92 5 2 4842 4932 49878729 49878639 5.150000e-26 130.0
26 TraesCS3D01G267200 chr5D 94.118 85 4 1 4845 4928 542716751 542716667 1.850000e-25 128.0
27 TraesCS3D01G267200 chr4A 91.398 93 7 1 4843 4934 37283935 37283843 6.660000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G267200 chr3D 371091853 371098181 6328 False 11688.00 11688 100.00000 1 6329 1 chr3D.!!$F1 6328
1 TraesCS3D01G267200 chr3A 492034720 492041103 6383 False 1779.25 5934 87.73875 28 6067 4 chr3A.!!$F1 6039
2 TraesCS3D01G267200 chr3B 482252175 482258673 6498 False 1297.65 5457 92.90350 28 6329 6 chr3B.!!$F2 6301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 889 0.572590 CGCTCTCTGGTAAATTCGCG 59.427 55.000 0.00 0.0 0.00 5.87 F
589 1071 0.656259 TGTTAGCGACGAGATCTCCG 59.344 55.000 17.13 15.8 0.00 4.63 F
1634 2128 0.250252 GGCTGCATCTAAGGCTCTCC 60.250 60.000 0.50 0.0 37.26 3.71 F
1829 2327 1.000019 AGATCCCTTCGTCCGGTCA 60.000 57.895 0.00 0.0 0.00 4.02 F
3202 3753 0.036732 TCGCAGCATCAAGGGAAAGT 59.963 50.000 0.00 0.0 0.00 2.66 F
3714 4295 0.396974 ACCACCACAGCAACAACCAT 60.397 50.000 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 2054 0.613260 AACAGCCGGACAAGAGCATA 59.387 50.0 5.05 0.00 0.00 3.14 R
2475 2982 0.399454 CTCACCCAGGCCAGGATATG 59.601 60.0 17.38 10.98 0.00 1.78 R
2711 3223 0.669318 CTGCGGTGCTAAAAGACGGA 60.669 55.0 0.00 0.00 0.00 4.69 R
3696 4277 0.032403 CATGGTTGTTGCTGTGGTGG 59.968 55.0 0.00 0.00 0.00 4.61 R
5095 5773 0.320374 CCTAACCACGCAGTCTTCCA 59.680 55.0 0.00 0.00 41.61 3.53 R
5676 6423 0.032540 GTTTGAAGCAAGGCCCACTG 59.967 55.0 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.088306 AAAACTGTCCGTTTGCGTCA 58.912 45.000 0.00 0.00 44.77 4.35
65 66 0.674269 TCGGGCCACGTTTTATGTCC 60.674 55.000 4.39 0.00 44.69 4.02
70 71 2.287728 GGCCACGTTTTATGTCCGTTTT 60.288 45.455 0.00 0.00 31.46 2.43
73 74 3.969981 CCACGTTTTATGTCCGTTTTGAC 59.030 43.478 0.00 0.00 35.77 3.18
99 102 2.817035 AACGCGCGTTGACAGAATA 58.183 47.368 43.50 0.00 36.91 1.75
124 138 0.674581 TGCGATTGGAGTTGCCTCTG 60.675 55.000 0.00 0.00 37.86 3.35
161 175 7.095060 CGCATTATGGAGTCTGCAAATATAACT 60.095 37.037 0.00 0.00 34.29 2.24
200 215 1.741145 CTAAAAATTCGTCCCCACGGG 59.259 52.381 0.00 0.00 46.70 5.28
237 252 3.894547 TTTGGTTCGCTCCTCGGGC 62.895 63.158 0.00 0.00 39.05 6.13
403 881 1.152943 AGATCGGCGCTCTCTGGTA 60.153 57.895 7.55 0.00 0.00 3.25
411 889 0.572590 CGCTCTCTGGTAAATTCGCG 59.427 55.000 0.00 0.00 0.00 5.87
494 972 2.087646 TGGCACAGCATAACGCAAATA 58.912 42.857 0.00 0.00 46.13 1.40
530 1008 3.502572 GGCTCGAATGACCAAGCC 58.497 61.111 0.00 0.00 46.76 4.35
539 1017 3.680937 CGAATGACCAAGCCGTACTAAAA 59.319 43.478 0.00 0.00 0.00 1.52
542 1020 5.560966 ATGACCAAGCCGTACTAAAATTG 57.439 39.130 0.00 0.00 0.00 2.32
589 1071 0.656259 TGTTAGCGACGAGATCTCCG 59.344 55.000 17.13 15.80 0.00 4.63
594 1076 1.644372 CGACGAGATCTCCGAGTGG 59.356 63.158 17.13 6.96 0.00 4.00
595 1077 0.810426 CGACGAGATCTCCGAGTGGA 60.810 60.000 17.13 0.00 43.88 4.02
596 1078 0.658897 GACGAGATCTCCGAGTGGAC 59.341 60.000 17.13 0.00 40.17 4.02
665 1150 2.228103 GGACAAGAAACCCACGAATTCC 59.772 50.000 0.00 0.00 0.00 3.01
862 1350 2.365635 CCCACCCTCCCTCATCGT 60.366 66.667 0.00 0.00 0.00 3.73
879 1367 2.077627 TCGTCTCCTCTTCTTCTCACG 58.922 52.381 0.00 0.00 0.00 4.35
889 1377 5.121454 CCTCTTCTTCTCACGAATTTTCCTG 59.879 44.000 0.00 0.00 0.00 3.86
890 1378 4.452455 TCTTCTTCTCACGAATTTTCCTGC 59.548 41.667 0.00 0.00 0.00 4.85
1130 1618 1.551452 CGTGTTCTCTCCCCTCTCTT 58.449 55.000 0.00 0.00 0.00 2.85
1184 1672 4.126208 TCCGTGTCTGTTTCTGTTTGTA 57.874 40.909 0.00 0.00 0.00 2.41
1210 1698 3.702555 GACGCGTGCGCTGTTTCT 61.703 61.111 20.70 0.00 44.19 2.52
1249 1737 1.314730 TTTGGTTCCGGCTTCTGTTC 58.685 50.000 0.00 0.00 0.00 3.18
1267 1755 3.117701 TGTTCTCCTTTGGTTGGTGATGA 60.118 43.478 0.00 0.00 0.00 2.92
1423 1915 3.568007 GGTTGATCTGTGCTTTGGTGTTA 59.432 43.478 0.00 0.00 0.00 2.41
1445 1937 5.490139 ACGATTCTGAGTATGCCAATTTG 57.510 39.130 0.00 0.00 0.00 2.32
1504 1998 8.276325 GGCGTTCTTAATCTCTGTATGTATTTG 58.724 37.037 0.00 0.00 0.00 2.32
1560 2054 1.862827 CGTCTTTTCCGTTCGTTTCCT 59.137 47.619 0.00 0.00 0.00 3.36
1634 2128 0.250252 GGCTGCATCTAAGGCTCTCC 60.250 60.000 0.50 0.00 37.26 3.71
1677 2172 3.643159 GGTTCATGACCCAAGTGTTTC 57.357 47.619 4.06 0.00 43.06 2.78
1689 2184 3.127895 CCAAGTGTTTCCGTGTTCTTTGA 59.872 43.478 0.00 0.00 0.00 2.69
1693 2188 4.094442 AGTGTTTCCGTGTTCTTTGAGTTC 59.906 41.667 0.00 0.00 0.00 3.01
1747 2242 1.664151 GGTCGTTTTGTGATCGATCCC 59.336 52.381 22.31 12.08 36.08 3.85
1829 2327 1.000019 AGATCCCTTCGTCCGGTCA 60.000 57.895 0.00 0.00 0.00 4.02
2475 2982 4.176851 GTCCCCGTCTCGTCTCGC 62.177 72.222 0.00 0.00 0.00 5.03
2581 3088 3.009115 CTGCCCCCGAGGAAAGGA 61.009 66.667 0.00 0.00 38.24 3.36
2598 3105 3.078836 AAAGCTACCGGGCCGCTA 61.079 61.111 23.20 11.14 32.90 4.26
2730 3246 0.669318 TCCGTCTTTTAGCACCGCAG 60.669 55.000 0.00 0.00 0.00 5.18
2798 3314 7.555965 ACAATTTGAAGCAAGTAGGTTTTTCT 58.444 30.769 2.79 0.00 38.24 2.52
2799 3315 7.706607 ACAATTTGAAGCAAGTAGGTTTTTCTC 59.293 33.333 2.79 0.00 38.24 2.87
2835 3374 9.555727 ACGTAATAATATTTGACATACTGCCTT 57.444 29.630 0.00 0.00 0.00 4.35
3004 3550 0.912486 ACAAGAGGTGACATAGGGGC 59.088 55.000 0.00 0.00 0.00 5.80
3005 3551 0.911769 CAAGAGGTGACATAGGGGCA 59.088 55.000 0.00 0.00 0.00 5.36
3006 3552 1.134280 CAAGAGGTGACATAGGGGCAG 60.134 57.143 0.00 0.00 0.00 4.85
3007 3553 1.147153 GAGGTGACATAGGGGCAGC 59.853 63.158 0.00 0.00 0.00 5.25
3202 3753 0.036732 TCGCAGCATCAAGGGAAAGT 59.963 50.000 0.00 0.00 0.00 2.66
3207 3759 3.623510 GCAGCATCAAGGGAAAGTAGTAC 59.376 47.826 0.00 0.00 0.00 2.73
3210 3762 4.080863 AGCATCAAGGGAAAGTAGTACCAG 60.081 45.833 0.00 0.00 0.00 4.00
3227 3779 1.995626 AGCGGTAGGGCAGATGGTT 60.996 57.895 0.00 0.00 34.64 3.67
3228 3780 1.819632 GCGGTAGGGCAGATGGTTG 60.820 63.158 0.00 0.00 0.00 3.77
3229 3781 1.153168 CGGTAGGGCAGATGGTTGG 60.153 63.158 0.00 0.00 0.00 3.77
3232 3784 0.837272 GTAGGGCAGATGGTTGGCTA 59.163 55.000 0.00 0.00 42.73 3.93
3234 3786 0.475906 AGGGCAGATGGTTGGCTATC 59.524 55.000 0.00 0.00 42.73 2.08
3235 3787 0.475906 GGGCAGATGGTTGGCTATCT 59.524 55.000 0.00 0.00 42.60 1.98
3236 3788 1.544314 GGGCAGATGGTTGGCTATCTC 60.544 57.143 0.00 0.00 40.35 2.75
3260 3812 9.186323 CTCTCTTCTTATAAATATGTGTGTCCG 57.814 37.037 0.00 0.00 0.00 4.79
3261 3813 8.909923 TCTCTTCTTATAAATATGTGTGTCCGA 58.090 33.333 0.00 0.00 0.00 4.55
3262 3814 9.698309 CTCTTCTTATAAATATGTGTGTCCGAT 57.302 33.333 0.00 0.00 0.00 4.18
3263 3815 9.692749 TCTTCTTATAAATATGTGTGTCCGATC 57.307 33.333 0.00 0.00 0.00 3.69
3264 3816 9.698309 CTTCTTATAAATATGTGTGTCCGATCT 57.302 33.333 0.00 0.00 0.00 2.75
3265 3817 9.692749 TTCTTATAAATATGTGTGTCCGATCTC 57.307 33.333 0.00 0.00 0.00 2.75
3267 3819 6.672266 ATAAATATGTGTGTCCGATCTCCT 57.328 37.500 0.00 0.00 0.00 3.69
3304 3870 2.537633 ATGGATGGGCATCAACAGTT 57.462 45.000 0.00 0.00 39.54 3.16
3456 4027 0.496841 ACCCTACCCACCCTTCTTCT 59.503 55.000 0.00 0.00 0.00 2.85
3694 4275 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
3695 4276 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
3696 4277 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
3697 4278 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
3698 4279 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
3699 4280 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
3700 4281 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
3701 4282 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
3702 4283 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
3714 4295 0.396974 ACCACCACAGCAACAACCAT 60.397 50.000 0.00 0.00 0.00 3.55
4118 4742 6.864560 AGTTTTCCTTTTCGTTTCTTTTCG 57.135 33.333 0.00 0.00 0.00 3.46
4134 4758 5.460646 TCTTTTCGGCTGCAAAGAAAATAG 58.539 37.500 16.63 14.76 41.26 1.73
4135 4759 4.846779 TTTCGGCTGCAAAGAAAATAGT 57.153 36.364 12.43 0.00 31.82 2.12
4271 4910 0.596600 GATTGATGGGCTGCAATGCG 60.597 55.000 0.50 0.00 35.05 4.73
4290 4933 3.437395 TGCGAATTAAAGCCTTAAAGCGA 59.563 39.130 13.53 1.49 38.01 4.93
4367 5026 1.600957 GATGACCCGTGATGCTCATTG 59.399 52.381 0.00 0.00 0.00 2.82
4491 5159 6.846505 AGGTTAAGTAGATTGATCCATCTCCA 59.153 38.462 12.35 0.00 0.00 3.86
4573 5241 4.562552 CCAAATTAAATGAGCCAAACCCGT 60.563 41.667 0.00 0.00 0.00 5.28
4587 5255 0.531311 ACCCGTCGAACAACTCAACC 60.531 55.000 0.00 0.00 0.00 3.77
4631 5301 1.810755 ACGAAAGAAAAATCCCGAGGC 59.189 47.619 0.00 0.00 0.00 4.70
4639 5309 0.681243 AAATCCCGAGGCCTCTTTGC 60.681 55.000 29.73 4.60 0.00 3.68
4708 5379 1.754234 GCAAATGGGCCGATCCAGT 60.754 57.895 0.00 0.00 40.56 4.00
4787 5460 1.000955 CCCGGATAGACCTTGGAATCG 59.999 57.143 0.73 0.00 36.31 3.34
4802 5476 5.637006 TGGAATCGTAACCATGAAAAAGG 57.363 39.130 0.00 0.00 0.00 3.11
4804 5478 4.421058 GAATCGTAACCATGAAAAAGGGC 58.579 43.478 0.00 0.00 30.67 5.19
4817 5491 8.741841 CCATGAAAAAGGGCATAAAAATGAAAT 58.258 29.630 0.00 0.00 0.00 2.17
4845 5520 8.004801 AGAAGATTTGAAAACCTTTCCCTTCTA 58.995 33.333 14.47 0.00 36.05 2.10
4846 5521 7.526142 AGATTTGAAAACCTTTCCCTTCTAC 57.474 36.000 0.00 0.00 0.00 2.59
4847 5522 7.298374 AGATTTGAAAACCTTTCCCTTCTACT 58.702 34.615 0.00 0.00 0.00 2.57
4848 5523 6.954487 TTTGAAAACCTTTCCCTTCTACTC 57.046 37.500 0.00 0.00 0.00 2.59
4849 5524 4.981812 TGAAAACCTTTCCCTTCTACTCC 58.018 43.478 0.00 0.00 0.00 3.85
4850 5525 4.663592 TGAAAACCTTTCCCTTCTACTCCT 59.336 41.667 0.00 0.00 0.00 3.69
4851 5526 5.133830 TGAAAACCTTTCCCTTCTACTCCTT 59.866 40.000 0.00 0.00 0.00 3.36
4852 5527 4.912317 AACCTTTCCCTTCTACTCCTTC 57.088 45.455 0.00 0.00 0.00 3.46
4853 5528 4.149090 ACCTTTCCCTTCTACTCCTTCT 57.851 45.455 0.00 0.00 0.00 2.85
4854 5529 4.504382 ACCTTTCCCTTCTACTCCTTCTT 58.496 43.478 0.00 0.00 0.00 2.52
4855 5530 4.914581 ACCTTTCCCTTCTACTCCTTCTTT 59.085 41.667 0.00 0.00 0.00 2.52
4856 5531 6.089502 ACCTTTCCCTTCTACTCCTTCTTTA 58.910 40.000 0.00 0.00 0.00 1.85
4857 5532 6.561454 ACCTTTCCCTTCTACTCCTTCTTTAA 59.439 38.462 0.00 0.00 0.00 1.52
4858 5533 7.073343 ACCTTTCCCTTCTACTCCTTCTTTAAA 59.927 37.037 0.00 0.00 0.00 1.52
4859 5534 7.390996 CCTTTCCCTTCTACTCCTTCTTTAAAC 59.609 40.741 0.00 0.00 0.00 2.01
4860 5535 7.628501 TTCCCTTCTACTCCTTCTTTAAACT 57.371 36.000 0.00 0.00 0.00 2.66
4861 5536 8.731591 TTCCCTTCTACTCCTTCTTTAAACTA 57.268 34.615 0.00 0.00 0.00 2.24
4862 5537 8.731591 TCCCTTCTACTCCTTCTTTAAACTAA 57.268 34.615 0.00 0.00 0.00 2.24
4863 5538 9.335211 TCCCTTCTACTCCTTCTTTAAACTAAT 57.665 33.333 0.00 0.00 0.00 1.73
4923 5598 7.521871 ACACTCTTATATTAGTTACGGAGGG 57.478 40.000 0.00 0.00 0.00 4.30
4924 5599 7.293073 ACACTCTTATATTAGTTACGGAGGGA 58.707 38.462 0.00 0.00 0.00 4.20
4925 5600 7.447853 ACACTCTTATATTAGTTACGGAGGGAG 59.552 40.741 0.00 0.00 0.00 4.30
4926 5601 7.447853 CACTCTTATATTAGTTACGGAGGGAGT 59.552 40.741 0.00 0.00 0.00 3.85
4941 5616 5.163343 CGGAGGGAGTATCTGTTGGAATTAA 60.163 44.000 0.00 0.00 33.73 1.40
4943 5618 6.352737 GGAGGGAGTATCTGTTGGAATTAACA 60.353 42.308 0.00 0.00 38.17 2.41
4944 5619 7.213178 AGGGAGTATCTGTTGGAATTAACAT 57.787 36.000 0.00 0.00 39.60 2.71
4945 5620 7.283329 AGGGAGTATCTGTTGGAATTAACATC 58.717 38.462 0.00 0.00 39.60 3.06
4946 5621 7.054124 GGGAGTATCTGTTGGAATTAACATCA 58.946 38.462 0.00 0.00 39.60 3.07
4947 5622 7.012421 GGGAGTATCTGTTGGAATTAACATCAC 59.988 40.741 0.00 0.00 39.60 3.06
4948 5623 7.770897 GGAGTATCTGTTGGAATTAACATCACT 59.229 37.037 0.00 0.00 39.60 3.41
4949 5624 8.498054 AGTATCTGTTGGAATTAACATCACTG 57.502 34.615 0.00 0.00 39.60 3.66
4950 5625 8.321353 AGTATCTGTTGGAATTAACATCACTGA 58.679 33.333 0.00 0.00 39.60 3.41
4951 5626 8.946085 GTATCTGTTGGAATTAACATCACTGAA 58.054 33.333 0.00 0.00 39.60 3.02
4952 5627 7.815840 TCTGTTGGAATTAACATCACTGAAA 57.184 32.000 0.00 0.00 39.60 2.69
4953 5628 7.874940 TCTGTTGGAATTAACATCACTGAAAG 58.125 34.615 0.00 0.00 39.60 2.62
4954 5629 7.502226 TCTGTTGGAATTAACATCACTGAAAGT 59.498 33.333 0.00 0.00 43.65 2.66
4955 5630 8.006298 TGTTGGAATTAACATCACTGAAAGTT 57.994 30.769 5.78 5.78 39.54 2.66
4956 5631 7.920151 TGTTGGAATTAACATCACTGAAAGTTG 59.080 33.333 9.39 0.00 39.54 3.16
4998 5673 5.597813 CTGCAAGTTCAATCTCTACGTTT 57.402 39.130 0.00 0.00 0.00 3.60
5042 5720 4.766375 TCCAAATCTCCGAATCTTGTACC 58.234 43.478 0.00 0.00 0.00 3.34
5082 5760 7.939039 AGAAAGGAATCTTGTAACATGAACTCA 59.061 33.333 0.00 0.00 32.75 3.41
5084 5762 7.440523 AGGAATCTTGTAACATGAACTCAAC 57.559 36.000 0.00 0.00 0.00 3.18
5095 5773 5.930135 ACATGAACTCAACTGTTTAGTCCT 58.070 37.500 7.75 0.00 35.69 3.85
5106 5784 2.288825 TGTTTAGTCCTGGAAGACTGCG 60.289 50.000 0.00 0.00 46.54 5.18
5164 5843 9.646427 CTAGCTATTATTTAAGCACCTAGAAGG 57.354 37.037 0.00 0.00 41.32 3.46
5168 5847 9.832445 CTATTATTTAAGCACCTAGAAGGAACA 57.168 33.333 0.00 0.00 37.67 3.18
5170 5849 9.700831 ATTATTTAAGCACCTAGAAGGAACATT 57.299 29.630 0.00 0.00 37.67 2.71
5172 5851 8.738645 ATTTAAGCACCTAGAAGGAACATTAG 57.261 34.615 0.00 0.00 37.67 1.73
5174 5853 5.091261 AGCACCTAGAAGGAACATTAGTG 57.909 43.478 0.00 0.00 37.67 2.74
5178 5857 6.351117 GCACCTAGAAGGAACATTAGTGTACT 60.351 42.308 0.00 0.00 37.67 2.73
5185 5866 8.958506 AGAAGGAACATTAGTGTACTAGTAGTG 58.041 37.037 13.29 0.00 37.67 2.74
5188 5869 9.745018 AGGAACATTAGTGTACTAGTAGTGTTA 57.255 33.333 13.29 0.00 42.05 2.41
5197 5878 8.782144 AGTGTACTAGTAGTGTTACTTGTCTTC 58.218 37.037 13.29 0.00 42.33 2.87
5207 5888 7.037438 AGTGTTACTTGTCTTCGTTTCTACAA 58.963 34.615 0.00 0.00 0.00 2.41
5218 5899 4.503910 TCGTTTCTACAATGTCTCCCATG 58.496 43.478 0.00 0.00 32.82 3.66
5220 5901 4.935205 CGTTTCTACAATGTCTCCCATGAA 59.065 41.667 0.00 0.00 32.82 2.57
5222 5903 4.760530 TCTACAATGTCTCCCATGAAGG 57.239 45.455 0.00 0.00 32.82 3.46
5224 5905 3.814504 ACAATGTCTCCCATGAAGGTT 57.185 42.857 0.00 0.00 32.82 3.50
5226 5907 3.828451 ACAATGTCTCCCATGAAGGTTTG 59.172 43.478 0.00 0.33 32.82 2.93
5228 5909 1.780309 TGTCTCCCATGAAGGTTTGGT 59.220 47.619 0.00 0.00 34.66 3.67
5229 5910 2.224769 TGTCTCCCATGAAGGTTTGGTC 60.225 50.000 0.00 0.00 34.66 4.02
5236 5917 1.593196 TGAAGGTTTGGTCTTGAGCG 58.407 50.000 0.00 0.00 0.00 5.03
5244 5925 3.782244 GTCTTGAGCGCGGCACTG 61.782 66.667 8.83 0.65 0.00 3.66
5252 5933 2.892334 GCGCGGCACTGACAGAAAA 61.892 57.895 10.08 0.00 0.00 2.29
5343 6028 1.153667 GTGAAGAGCGCAGAGGAGG 60.154 63.158 11.47 0.00 0.00 4.30
5344 6029 1.304464 TGAAGAGCGCAGAGGAGGA 60.304 57.895 11.47 0.00 0.00 3.71
5347 6032 1.319614 AAGAGCGCAGAGGAGGAGAC 61.320 60.000 11.47 0.00 0.00 3.36
5348 6033 3.119709 GAGCGCAGAGGAGGAGACG 62.120 68.421 11.47 0.00 0.00 4.18
5349 6034 3.134792 GCGCAGAGGAGGAGACGA 61.135 66.667 0.30 0.00 0.00 4.20
5352 6037 1.711060 CGCAGAGGAGGAGACGAGAC 61.711 65.000 0.00 0.00 0.00 3.36
5355 6040 0.177141 AGAGGAGGAGACGAGACGAG 59.823 60.000 0.00 0.00 0.00 4.18
5371 6056 0.391793 CGAGGGCCAAGGAAGAAGAC 60.392 60.000 6.18 0.00 0.00 3.01
5381 6066 0.179108 GGAAGAAGACGGGGATGTCG 60.179 60.000 0.00 0.00 43.70 4.35
5388 6073 2.342279 CGGGGATGTCGTGTGTGT 59.658 61.111 0.00 0.00 0.00 3.72
5389 6074 1.736645 CGGGGATGTCGTGTGTGTC 60.737 63.158 0.00 0.00 0.00 3.67
5390 6075 1.369692 GGGGATGTCGTGTGTGTCA 59.630 57.895 0.00 0.00 0.00 3.58
5408 6096 2.508663 GCGAGCGAGGGGTGTTAC 60.509 66.667 0.00 0.00 0.00 2.50
5437 6125 4.386711 AGAAGAAACAAAACCGGTAGAGG 58.613 43.478 8.00 0.00 37.30 3.69
5439 6127 2.156917 GAAACAAAACCGGTAGAGGGG 58.843 52.381 8.00 0.00 35.02 4.79
5442 6130 1.848895 AAAACCGGTAGAGGGGGCA 60.849 57.895 8.00 0.00 35.02 5.36
5444 6132 1.212250 AAACCGGTAGAGGGGGCATT 61.212 55.000 8.00 0.00 35.02 3.56
5561 6253 2.981081 TGATGATGATGATGCCTACCCA 59.019 45.455 0.00 0.00 0.00 4.51
5597 6295 0.251430 CTTTTCCGGGGGCTTGGTTA 60.251 55.000 0.00 0.00 0.00 2.85
5611 6309 5.391449 GGCTTGGTTAGAAAATCTCGTTTC 58.609 41.667 0.00 0.00 37.70 2.78
5613 6311 5.107220 GCTTGGTTAGAAAATCTCGTTTCGA 60.107 40.000 0.00 0.00 41.49 3.71
5635 6382 2.285950 GCTCGAGTGTTGTTTGCGTTTA 60.286 45.455 15.13 0.00 0.00 2.01
5641 6388 2.008329 TGTTGTTTGCGTTTACTCGGT 58.992 42.857 0.00 0.00 0.00 4.69
5649 6396 1.223187 CGTTTACTCGGTGGTTGCTT 58.777 50.000 0.00 0.00 0.00 3.91
5650 6397 2.406130 CGTTTACTCGGTGGTTGCTTA 58.594 47.619 0.00 0.00 0.00 3.09
5652 6399 3.061697 CGTTTACTCGGTGGTTGCTTATC 59.938 47.826 0.00 0.00 0.00 1.75
5653 6400 2.572191 TACTCGGTGGTTGCTTATCG 57.428 50.000 0.00 0.00 0.00 2.92
5654 6401 0.108329 ACTCGGTGGTTGCTTATCGG 60.108 55.000 0.00 0.00 0.00 4.18
5655 6402 0.108329 CTCGGTGGTTGCTTATCGGT 60.108 55.000 0.00 0.00 0.00 4.69
5656 6403 0.108520 TCGGTGGTTGCTTATCGGTC 60.109 55.000 0.00 0.00 0.00 4.79
5657 6404 0.108329 CGGTGGTTGCTTATCGGTCT 60.108 55.000 0.00 0.00 0.00 3.85
5673 6420 3.194116 TCGGTCTTAATTAGTTCCTGCGT 59.806 43.478 0.00 0.00 0.00 5.24
5676 6423 4.436986 GGTCTTAATTAGTTCCTGCGTTGC 60.437 45.833 0.00 0.00 0.00 4.17
5698 6445 0.753479 TGGGCCTTGCTTCAAACGAA 60.753 50.000 4.53 0.00 0.00 3.85
5722 6469 2.109799 CTAGCCCTGATGCACGGG 59.890 66.667 12.14 12.14 44.27 5.28
5755 6503 0.924090 CTATGGAAGAAGCGACGCAC 59.076 55.000 23.70 15.27 0.00 5.34
5807 6570 2.431683 GAAGACACTGGCTGGGCA 59.568 61.111 0.00 0.00 0.00 5.36
5808 6571 1.228245 GAAGACACTGGCTGGGCAA 60.228 57.895 0.00 0.00 0.00 4.52
5809 6572 1.518903 GAAGACACTGGCTGGGCAAC 61.519 60.000 0.00 0.00 0.00 4.17
5810 6573 1.999634 AAGACACTGGCTGGGCAACT 62.000 55.000 0.00 0.00 0.00 3.16
5811 6574 2.203394 ACACTGGCTGGGCAACTG 60.203 61.111 0.00 0.00 0.00 3.16
5812 6575 2.987547 CACTGGCTGGGCAACTGG 60.988 66.667 0.00 0.00 0.00 4.00
5813 6576 3.501911 ACTGGCTGGGCAACTGGT 61.502 61.111 0.00 0.00 0.00 4.00
5814 6577 2.674380 CTGGCTGGGCAACTGGTC 60.674 66.667 0.00 0.00 0.00 4.02
5815 6578 4.284550 TGGCTGGGCAACTGGTCC 62.285 66.667 0.00 0.00 43.63 4.46
5816 6579 3.971702 GGCTGGGCAACTGGTCCT 61.972 66.667 0.00 0.00 43.75 3.85
5817 6580 2.360475 GCTGGGCAACTGGTCCTC 60.360 66.667 0.00 0.00 43.75 3.71
5818 6581 2.352805 CTGGGCAACTGGTCCTCC 59.647 66.667 0.00 0.00 43.75 4.30
5819 6582 3.612247 CTGGGCAACTGGTCCTCCG 62.612 68.421 0.00 0.00 43.75 4.63
5820 6583 3.637273 GGGCAACTGGTCCTCCGT 61.637 66.667 0.00 0.00 38.65 4.69
5821 6584 2.430367 GGCAACTGGTCCTCCGTT 59.570 61.111 0.00 0.00 36.30 4.44
5822 6585 1.228154 GGCAACTGGTCCTCCGTTT 60.228 57.895 0.00 0.00 36.30 3.60
5823 6586 0.822121 GGCAACTGGTCCTCCGTTTT 60.822 55.000 0.00 0.00 36.30 2.43
5824 6587 1.029681 GCAACTGGTCCTCCGTTTTT 58.970 50.000 0.00 0.00 36.30 1.94
5916 6679 0.813184 GCTGTACTGCCGTAGTGGTA 59.187 55.000 13.37 0.00 40.65 3.25
5975 6738 3.170672 TGGCAGGTGGCACTGACT 61.171 61.111 18.45 3.06 46.85 3.41
5985 6748 1.891919 GCACTGACTTGTGGGCGAA 60.892 57.895 0.00 0.00 38.31 4.70
5990 6753 2.154462 CTGACTTGTGGGCGAATTTCT 58.846 47.619 0.00 0.00 0.00 2.52
5992 6755 2.955660 TGACTTGTGGGCGAATTTCTTT 59.044 40.909 0.00 0.00 0.00 2.52
5993 6756 3.383185 TGACTTGTGGGCGAATTTCTTTT 59.617 39.130 0.00 0.00 0.00 2.27
5994 6757 4.142049 TGACTTGTGGGCGAATTTCTTTTT 60.142 37.500 0.00 0.00 0.00 1.94
6050 6813 1.583054 GTGAAACGAGGAGCAACTGT 58.417 50.000 0.00 0.00 0.00 3.55
6061 6824 3.972227 CAACTGTTGCTCCCCTCG 58.028 61.111 7.70 0.00 0.00 4.63
6067 6830 3.706373 TTGCTCCCCTCGGCTCAC 61.706 66.667 0.00 0.00 0.00 3.51
6080 6843 4.368391 CTCACGAGCTGGCAAAGT 57.632 55.556 0.00 0.00 0.00 2.66
6081 6844 1.864862 CTCACGAGCTGGCAAAGTG 59.135 57.895 0.00 0.00 0.00 3.16
6082 6845 1.572085 CTCACGAGCTGGCAAAGTGG 61.572 60.000 0.00 0.00 33.98 4.00
6083 6846 2.281761 ACGAGCTGGCAAAGTGGG 60.282 61.111 0.00 0.00 0.00 4.61
6084 6847 3.058160 CGAGCTGGCAAAGTGGGG 61.058 66.667 0.00 0.00 0.00 4.96
6085 6848 2.677875 GAGCTGGCAAAGTGGGGG 60.678 66.667 0.00 0.00 0.00 5.40
6086 6849 3.185203 AGCTGGCAAAGTGGGGGA 61.185 61.111 0.00 0.00 0.00 4.81
6087 6850 2.677875 GCTGGCAAAGTGGGGGAG 60.678 66.667 0.00 0.00 0.00 4.30
6088 6851 2.846532 CTGGCAAAGTGGGGGAGT 59.153 61.111 0.00 0.00 0.00 3.85
6089 6852 1.604593 CTGGCAAAGTGGGGGAGTG 60.605 63.158 0.00 0.00 0.00 3.51
6090 6853 2.991540 GGCAAAGTGGGGGAGTGC 60.992 66.667 0.00 0.00 34.42 4.40
6091 6854 2.203480 GCAAAGTGGGGGAGTGCA 60.203 61.111 0.00 0.00 35.28 4.57
6092 6855 1.832167 GCAAAGTGGGGGAGTGCAA 60.832 57.895 0.00 0.00 35.28 4.08
6093 6856 1.398958 GCAAAGTGGGGGAGTGCAAA 61.399 55.000 0.00 0.00 35.28 3.68
6094 6857 0.389025 CAAAGTGGGGGAGTGCAAAC 59.611 55.000 0.00 0.00 0.00 2.93
6095 6858 1.106944 AAAGTGGGGGAGTGCAAACG 61.107 55.000 0.00 0.00 0.00 3.60
6096 6859 1.990160 AAGTGGGGGAGTGCAAACGA 61.990 55.000 0.00 0.00 0.00 3.85
6097 6860 2.112297 TGGGGGAGTGCAAACGAC 59.888 61.111 0.00 0.00 0.00 4.34
6098 6861 2.671963 GGGGGAGTGCAAACGACC 60.672 66.667 0.00 0.00 0.00 4.79
6099 6862 2.671963 GGGGAGTGCAAACGACCC 60.672 66.667 0.00 0.00 39.79 4.46
6100 6863 2.430367 GGGAGTGCAAACGACCCT 59.570 61.111 0.00 0.00 37.75 4.34
6101 6864 1.671379 GGGAGTGCAAACGACCCTC 60.671 63.158 0.00 0.00 37.75 4.30
6102 6865 1.070786 GGAGTGCAAACGACCCTCA 59.929 57.895 0.00 0.00 0.00 3.86
6103 6866 0.321653 GGAGTGCAAACGACCCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
6104 6867 0.798776 GAGTGCAAACGACCCTCATG 59.201 55.000 0.00 0.00 0.00 3.07
6105 6868 0.108585 AGTGCAAACGACCCTCATGT 59.891 50.000 0.00 0.00 0.00 3.21
6106 6869 0.951558 GTGCAAACGACCCTCATGTT 59.048 50.000 0.00 0.00 0.00 2.71
6107 6870 1.336755 GTGCAAACGACCCTCATGTTT 59.663 47.619 0.00 0.00 36.31 2.83
6109 6872 2.704725 CAAACGACCCTCATGTTTGG 57.295 50.000 8.71 0.00 45.30 3.28
6110 6873 1.269448 CAAACGACCCTCATGTTTGGG 59.731 52.381 15.91 15.91 45.30 4.12
6114 6877 2.354729 CCCTCATGTTTGGGCGGA 59.645 61.111 7.92 0.00 36.61 5.54
6115 6878 1.076777 CCCTCATGTTTGGGCGGAT 60.077 57.895 7.92 0.00 36.61 4.18
6116 6879 1.386525 CCCTCATGTTTGGGCGGATG 61.387 60.000 7.92 0.00 36.61 3.51
6117 6880 1.434696 CTCATGTTTGGGCGGATGC 59.565 57.895 0.00 0.00 41.71 3.91
6118 6881 1.303970 TCATGTTTGGGCGGATGCA 60.304 52.632 0.00 0.00 45.35 3.96
6120 6883 2.350458 ATGTTTGGGCGGATGCACC 61.350 57.895 0.00 0.00 46.93 5.01
6121 6884 2.676471 GTTTGGGCGGATGCACCT 60.676 61.111 0.00 0.00 46.93 4.00
6122 6885 2.361104 TTTGGGCGGATGCACCTC 60.361 61.111 0.00 0.00 46.93 3.85
6123 6886 3.936772 TTTGGGCGGATGCACCTCC 62.937 63.158 5.95 5.95 46.93 4.30
6125 6888 3.161450 GGGCGGATGCACCTCCTA 61.161 66.667 12.24 0.00 42.74 2.94
6126 6889 2.742116 GGGCGGATGCACCTCCTAA 61.742 63.158 12.24 0.00 42.74 2.69
6127 6890 1.451936 GGCGGATGCACCTCCTAAT 59.548 57.895 4.86 0.00 45.35 1.73
6128 6891 0.179018 GGCGGATGCACCTCCTAATT 60.179 55.000 4.86 0.00 45.35 1.40
6129 6892 1.680338 GCGGATGCACCTCCTAATTT 58.320 50.000 4.86 0.00 42.15 1.82
6130 6893 2.024414 GCGGATGCACCTCCTAATTTT 58.976 47.619 4.86 0.00 42.15 1.82
6131 6894 2.033424 GCGGATGCACCTCCTAATTTTC 59.967 50.000 4.86 0.00 42.15 2.29
6132 6895 3.545703 CGGATGCACCTCCTAATTTTCT 58.454 45.455 4.86 0.00 36.31 2.52
6133 6896 3.947834 CGGATGCACCTCCTAATTTTCTT 59.052 43.478 4.86 0.00 36.31 2.52
6134 6897 4.201950 CGGATGCACCTCCTAATTTTCTTG 60.202 45.833 4.86 0.00 36.31 3.02
6135 6898 4.706962 GGATGCACCTCCTAATTTTCTTGT 59.293 41.667 0.00 0.00 35.41 3.16
6136 6899 5.185828 GGATGCACCTCCTAATTTTCTTGTT 59.814 40.000 0.00 0.00 35.41 2.83
6137 6900 6.377146 GGATGCACCTCCTAATTTTCTTGTTA 59.623 38.462 0.00 0.00 35.41 2.41
6138 6901 7.093945 GGATGCACCTCCTAATTTTCTTGTTAA 60.094 37.037 0.00 0.00 35.41 2.01
6139 6902 7.589958 TGCACCTCCTAATTTTCTTGTTAAA 57.410 32.000 0.00 0.00 0.00 1.52
6140 6903 8.189119 TGCACCTCCTAATTTTCTTGTTAAAT 57.811 30.769 0.00 0.00 0.00 1.40
6141 6904 8.646900 TGCACCTCCTAATTTTCTTGTTAAATT 58.353 29.630 0.00 0.00 38.40 1.82
6142 6905 9.489084 GCACCTCCTAATTTTCTTGTTAAATTT 57.511 29.630 0.00 0.00 36.75 1.82
6152 6915 8.964420 TTTTCTTGTTAAATTTCTAGCGGATG 57.036 30.769 0.00 0.00 0.00 3.51
6153 6916 7.915293 TTCTTGTTAAATTTCTAGCGGATGA 57.085 32.000 0.00 0.00 0.00 2.92
6154 6917 8.506168 TTCTTGTTAAATTTCTAGCGGATGAT 57.494 30.769 0.00 0.00 0.00 2.45
6155 6918 7.919690 TCTTGTTAAATTTCTAGCGGATGATG 58.080 34.615 0.00 0.00 0.00 3.07
6156 6919 7.552687 TCTTGTTAAATTTCTAGCGGATGATGT 59.447 33.333 0.00 0.00 0.00 3.06
6157 6920 8.725405 TTGTTAAATTTCTAGCGGATGATGTA 57.275 30.769 0.00 0.00 0.00 2.29
6158 6921 8.725405 TGTTAAATTTCTAGCGGATGATGTAA 57.275 30.769 0.00 0.00 0.00 2.41
6159 6922 9.337396 TGTTAAATTTCTAGCGGATGATGTAAT 57.663 29.630 0.00 0.00 0.00 1.89
6160 6923 9.813080 GTTAAATTTCTAGCGGATGATGTAATC 57.187 33.333 0.00 0.00 45.83 1.75
6225 6988 2.734948 TTCAACCGGCTACCCCAACG 62.735 60.000 0.00 0.00 0.00 4.10
6248 7011 2.459442 GCGCTGTGATGTGGCTCTC 61.459 63.158 0.00 0.00 0.00 3.20
6253 7016 0.900182 TGTGATGTGGCTCTCCGACT 60.900 55.000 0.00 0.00 34.14 4.18
6254 7017 0.179124 GTGATGTGGCTCTCCGACTC 60.179 60.000 0.00 0.00 34.14 3.36
6258 7021 3.071206 TGGCTCTCCGACTCTGCC 61.071 66.667 0.00 0.00 43.49 4.85
6283 7604 2.281484 TCCGCCTTCACTTGTGGC 60.281 61.111 0.64 0.00 42.94 5.01
6290 7611 1.152777 TTCACTTGTGGCTGTGGGG 60.153 57.895 0.64 0.00 35.15 4.96
6293 7614 2.382770 ACTTGTGGCTGTGGGGACA 61.383 57.895 0.00 0.00 38.70 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.889019 TTTTTGTCAAAACGGACATAAACC 57.111 33.333 10.29 0.00 46.37 3.27
23 24 0.375803 GTTGACGCAAACGGACAGTT 59.624 50.000 0.00 0.00 46.76 3.16
24 25 2.011453 GTTGACGCAAACGGACAGT 58.989 52.632 0.00 0.00 46.04 3.55
25 26 4.893241 GTTGACGCAAACGGACAG 57.107 55.556 0.00 0.00 46.04 3.51
47 48 1.798087 GGACATAAAACGTGGCCCG 59.202 57.895 11.48 11.48 38.93 6.13
53 54 4.879104 TGTCAAAACGGACATAAAACGT 57.121 36.364 0.00 0.00 42.56 3.99
70 71 1.648756 CGCGCGTTCGTTTTTGTCA 60.649 52.632 24.19 0.00 38.14 3.58
79 80 2.210524 ATTCTGTCAACGCGCGTTCG 62.211 55.000 42.16 33.64 36.00 3.95
80 81 0.711670 TATTCTGTCAACGCGCGTTC 59.288 50.000 42.16 31.76 36.00 3.95
89 92 1.542472 TCGCACGACCTATTCTGTCAA 59.458 47.619 0.00 0.00 32.91 3.18
99 102 0.670546 CAACTCCAATCGCACGACCT 60.671 55.000 0.00 0.00 0.00 3.85
124 138 4.216257 ACTCCATAATGCGTATGAATTGCC 59.784 41.667 8.42 0.00 42.07 4.52
136 150 8.103948 AGTTATATTTGCAGACTCCATAATGC 57.896 34.615 0.00 0.00 39.14 3.56
200 215 2.355009 CAGGCAGCAACGTTTGGC 60.355 61.111 16.39 16.39 39.90 4.52
403 881 0.729116 CCAGATGAGTGCGCGAATTT 59.271 50.000 12.10 0.00 0.00 1.82
411 889 1.524482 GGGTCTCCCAGATGAGTGC 59.476 63.158 0.00 0.00 44.65 4.40
444 922 0.528684 GAGTGCATCTCCTGGCGTAC 60.529 60.000 0.00 0.00 37.22 3.67
494 972 1.064463 CCCCACATGGCAGTCACTTAT 60.064 52.381 0.00 0.00 0.00 1.73
542 1020 5.398416 GTCACCGCAAACTAAATTGAGAAAC 59.602 40.000 0.00 0.00 32.61 2.78
589 1071 2.035442 GCCCTTCAAGCGTCCACTC 61.035 63.158 0.00 0.00 0.00 3.51
639 1121 1.226746 GTGGGTTTCTTGTCCACGAG 58.773 55.000 0.00 0.00 41.03 4.18
644 1126 2.228103 GGAATTCGTGGGTTTCTTGTCC 59.772 50.000 0.00 0.00 0.00 4.02
665 1150 1.580942 CAGTGTGGTGATTTGCGGG 59.419 57.895 0.00 0.00 0.00 6.13
696 1182 4.619320 CTGCCCAAACTGCCCCCA 62.619 66.667 0.00 0.00 0.00 4.96
879 1367 4.377328 GCCACGAAATTTGCAGGAAAATTC 60.377 41.667 5.35 5.35 38.49 2.17
889 1377 2.809174 GGCGGCCACGAAATTTGC 60.809 61.111 15.62 0.00 44.60 3.68
890 1378 1.154035 GAGGCGGCCACGAAATTTG 60.154 57.895 23.09 0.00 44.60 2.32
1130 1618 2.520069 AGAAGAGCACGAAGAAGAGGA 58.480 47.619 0.00 0.00 0.00 3.71
1184 1672 2.224217 CGCACGCGTCGATCTGAAT 61.224 57.895 21.09 0.00 34.35 2.57
1210 1698 3.822594 AAATCAAACGCACGCAAGATA 57.177 38.095 0.00 0.00 43.62 1.98
1249 1737 5.010922 TGAAATTCATCACCAACCAAAGGAG 59.989 40.000 0.00 0.00 0.00 3.69
1267 1755 2.749621 GGACAGGCGAACAGATGAAATT 59.250 45.455 0.00 0.00 0.00 1.82
1423 1915 4.201950 GCAAATTGGCATACTCAGAATCGT 60.202 41.667 0.00 0.00 0.00 3.73
1560 2054 0.613260 AACAGCCGGACAAGAGCATA 59.387 50.000 5.05 0.00 0.00 3.14
1634 2128 3.653344 TGAACTCCAATCTTCACACGAG 58.347 45.455 0.00 0.00 0.00 4.18
1665 2160 1.064979 AGAACACGGAAACACTTGGGT 60.065 47.619 0.00 0.00 0.00 4.51
1668 2163 4.142687 ACTCAAAGAACACGGAAACACTTG 60.143 41.667 0.00 0.00 0.00 3.16
1677 2172 2.285083 TGGTGAACTCAAAGAACACGG 58.715 47.619 0.00 0.00 33.08 4.94
1747 2242 4.612614 CCGATGAAATGAAAAGAACACACG 59.387 41.667 0.00 0.00 0.00 4.49
2098 2605 2.330372 CGTGTCGGAGGAGTCGGAA 61.330 63.158 0.00 0.00 34.10 4.30
2417 2924 3.580319 GTGGTGGGGAGGCTGGTT 61.580 66.667 0.00 0.00 0.00 3.67
2460 2967 1.516365 ATATGCGAGACGAGACGGGG 61.516 60.000 0.00 0.00 0.00 5.73
2475 2982 0.399454 CTCACCCAGGCCAGGATATG 59.601 60.000 17.38 10.98 0.00 1.78
2581 3088 3.078836 TAGCGGCCCGGTAGCTTT 61.079 61.111 11.65 1.36 41.88 3.51
2598 3105 2.949447 ACAACAAGAACAAGATGGCCT 58.051 42.857 3.32 0.00 0.00 5.19
2711 3223 0.669318 CTGCGGTGCTAAAAGACGGA 60.669 55.000 0.00 0.00 0.00 4.69
2730 3246 1.845809 CGTCCAACTCCAGCACTTGC 61.846 60.000 0.00 0.00 42.49 4.01
2771 3287 7.538303 AAAACCTACTTGCTTCAAATTGTTG 57.462 32.000 0.00 0.00 35.95 3.33
2772 3288 8.040727 AGAAAAACCTACTTGCTTCAAATTGTT 58.959 29.630 0.00 0.00 0.00 2.83
2773 3289 7.555965 AGAAAAACCTACTTGCTTCAAATTGT 58.444 30.769 0.00 0.00 0.00 2.71
2823 3339 4.063689 CCAGATCATCAAGGCAGTATGTC 58.936 47.826 0.00 0.00 44.67 3.06
2825 3341 4.347360 TCCAGATCATCAAGGCAGTATG 57.653 45.455 0.00 0.00 40.87 2.39
2828 3344 2.224233 CGATCCAGATCATCAAGGCAGT 60.224 50.000 8.31 0.00 37.69 4.40
2829 3345 2.414806 CGATCCAGATCATCAAGGCAG 58.585 52.381 8.31 0.00 37.69 4.85
2832 3371 2.612471 GGAGCGATCCAGATCATCAAGG 60.612 54.545 16.44 0.00 37.69 3.61
2835 3374 1.708341 TGGAGCGATCCAGATCATCA 58.292 50.000 20.59 0.00 37.69 3.07
2858 3397 9.575783 GTAAATAAATGGCACGAAATTAGGAAA 57.424 29.630 0.00 0.00 0.00 3.13
3007 3553 2.824041 AAATACGGGCGCTGCTGG 60.824 61.111 7.64 0.00 0.00 4.85
3055 3601 5.144692 TGAGCAGATATGGCAATCTAGTC 57.855 43.478 10.46 10.38 34.40 2.59
3202 3753 0.754217 CTGCCCTACCGCTGGTACTA 60.754 60.000 3.72 0.00 37.09 1.82
3207 3759 2.109799 CATCTGCCCTACCGCTGG 59.890 66.667 0.00 0.00 0.00 4.85
3210 3762 1.819632 CAACCATCTGCCCTACCGC 60.820 63.158 0.00 0.00 0.00 5.68
3234 3786 9.186323 CGGACACACATATTTATAAGAAGAGAG 57.814 37.037 0.00 0.00 0.00 3.20
3235 3787 8.909923 TCGGACACACATATTTATAAGAAGAGA 58.090 33.333 0.00 0.00 0.00 3.10
3236 3788 9.698309 ATCGGACACACATATTTATAAGAAGAG 57.302 33.333 0.00 0.00 0.00 2.85
3257 3809 5.621193 ACAGAAAAGAAAAAGGAGATCGGA 58.379 37.500 0.00 0.00 0.00 4.55
3258 3810 5.948992 ACAGAAAAGAAAAAGGAGATCGG 57.051 39.130 0.00 0.00 0.00 4.18
3262 3814 9.231297 CCATACATACAGAAAAGAAAAAGGAGA 57.769 33.333 0.00 0.00 0.00 3.71
3263 3815 9.231297 TCCATACATACAGAAAAGAAAAAGGAG 57.769 33.333 0.00 0.00 0.00 3.69
3264 3816 9.753674 ATCCATACATACAGAAAAGAAAAAGGA 57.246 29.630 0.00 0.00 0.00 3.36
3265 3817 9.793252 CATCCATACATACAGAAAAGAAAAAGG 57.207 33.333 0.00 0.00 0.00 3.11
3267 3819 8.748412 CCCATCCATACATACAGAAAAGAAAAA 58.252 33.333 0.00 0.00 0.00 1.94
3456 4027 1.562672 GGCTGCTGAGGGGTAAAGGA 61.563 60.000 0.00 0.00 0.00 3.36
3694 4275 1.318886 TGGTTGTTGCTGTGGTGGTG 61.319 55.000 0.00 0.00 0.00 4.17
3695 4276 0.396974 ATGGTTGTTGCTGTGGTGGT 60.397 50.000 0.00 0.00 0.00 4.16
3696 4277 0.032403 CATGGTTGTTGCTGTGGTGG 59.968 55.000 0.00 0.00 0.00 4.61
3697 4278 1.031235 TCATGGTTGTTGCTGTGGTG 58.969 50.000 0.00 0.00 0.00 4.17
3698 4279 1.032014 GTCATGGTTGTTGCTGTGGT 58.968 50.000 0.00 0.00 0.00 4.16
3699 4280 1.267806 GAGTCATGGTTGTTGCTGTGG 59.732 52.381 0.00 0.00 0.00 4.17
3700 4281 1.069703 CGAGTCATGGTTGTTGCTGTG 60.070 52.381 0.00 0.00 0.00 3.66
3701 4282 1.229428 CGAGTCATGGTTGTTGCTGT 58.771 50.000 0.00 0.00 0.00 4.40
3702 4283 0.110056 GCGAGTCATGGTTGTTGCTG 60.110 55.000 0.00 0.00 0.00 4.41
3714 4295 2.340078 GACACCAGCTGCGAGTCA 59.660 61.111 19.92 0.00 0.00 3.41
4193 4820 9.628500 AGAATCACCACTAGTACTTTTTCTTTT 57.372 29.630 0.00 0.00 0.00 2.27
4203 4830 6.127310 ACCTGAATCAGAATCACCACTAGTAC 60.127 42.308 12.53 0.00 32.44 2.73
4209 4836 4.080863 ACCTACCTGAATCAGAATCACCAC 60.081 45.833 12.53 0.00 32.44 4.16
4211 4838 4.762289 ACCTACCTGAATCAGAATCACC 57.238 45.455 12.53 0.00 32.44 4.02
4215 4842 6.125029 CCAATCAACCTACCTGAATCAGAAT 58.875 40.000 12.53 1.99 32.44 2.40
4216 4843 5.014123 ACCAATCAACCTACCTGAATCAGAA 59.986 40.000 12.53 0.00 32.44 3.02
4217 4844 4.536090 ACCAATCAACCTACCTGAATCAGA 59.464 41.667 12.53 0.00 32.44 3.27
4218 4845 4.848357 ACCAATCAACCTACCTGAATCAG 58.152 43.478 2.68 2.68 0.00 2.90
4271 4910 5.562506 ACCTCGCTTTAAGGCTTTAATTC 57.437 39.130 4.45 0.00 37.42 2.17
4290 4933 5.651303 AGAAAAGGGGCAACTAATTAACCT 58.349 37.500 0.00 0.00 0.00 3.50
4367 5026 1.935933 AATAACTCGGCACCGTCATC 58.064 50.000 9.23 0.00 40.74 2.92
4498 5166 5.988561 CAGGCTGATGAATCTACTTAACCTC 59.011 44.000 9.42 0.00 0.00 3.85
4560 5228 1.595929 GTTCGACGGGTTTGGCTCA 60.596 57.895 0.00 0.00 0.00 4.26
4573 5241 1.600164 CGTACCGGTTGAGTTGTTCGA 60.600 52.381 15.04 0.00 0.00 3.71
4587 5255 4.918583 GCCTACTACTAGTAGTACGTACCG 59.081 50.000 30.50 21.55 45.12 4.02
4609 5279 2.414161 CCTCGGGATTTTTCTTTCGTGC 60.414 50.000 0.00 0.00 0.00 5.34
4613 5283 2.423892 GAGGCCTCGGGATTTTTCTTTC 59.576 50.000 19.06 0.00 0.00 2.62
4639 5309 0.608130 TCACAGGTGGACCTCATTCG 59.392 55.000 0.00 0.00 46.65 3.34
4657 5328 2.048127 AACGGCGAGTTGAGGCTC 60.048 61.111 16.62 7.79 42.39 4.70
4708 5379 3.671410 CCACATGGGCCCCTTCCA 61.671 66.667 22.27 0.00 38.82 3.53
4777 5450 5.637006 TTTTCATGGTTACGATTCCAAGG 57.363 39.130 0.00 0.00 37.27 3.61
4787 5460 7.971183 TTTTTATGCCCTTTTTCATGGTTAC 57.029 32.000 0.00 0.00 0.00 2.50
4817 5491 8.547481 AAGGGAAAGGTTTTCAAATCTTCTTA 57.453 30.769 0.00 0.00 38.34 2.10
4833 5507 5.506730 AAAGAAGGAGTAGAAGGGAAAGG 57.493 43.478 0.00 0.00 0.00 3.11
4897 5572 8.419442 CCCTCCGTAACTAATATAAGAGTGTTT 58.581 37.037 0.00 0.00 0.00 2.83
4898 5573 7.781693 TCCCTCCGTAACTAATATAAGAGTGTT 59.218 37.037 0.00 0.00 0.00 3.32
4899 5574 7.293073 TCCCTCCGTAACTAATATAAGAGTGT 58.707 38.462 0.00 0.00 0.00 3.55
4900 5575 7.447853 ACTCCCTCCGTAACTAATATAAGAGTG 59.552 40.741 0.00 0.00 0.00 3.51
4901 5576 7.525165 ACTCCCTCCGTAACTAATATAAGAGT 58.475 38.462 0.00 0.00 0.00 3.24
4902 5577 7.999450 ACTCCCTCCGTAACTAATATAAGAG 57.001 40.000 0.00 0.00 0.00 2.85
4903 5578 9.678260 GATACTCCCTCCGTAACTAATATAAGA 57.322 37.037 0.00 0.00 0.00 2.10
4904 5579 9.683870 AGATACTCCCTCCGTAACTAATATAAG 57.316 37.037 0.00 0.00 0.00 1.73
4905 5580 9.458727 CAGATACTCCCTCCGTAACTAATATAA 57.541 37.037 0.00 0.00 0.00 0.98
4906 5581 8.609483 ACAGATACTCCCTCCGTAACTAATATA 58.391 37.037 0.00 0.00 0.00 0.86
4907 5582 7.468496 ACAGATACTCCCTCCGTAACTAATAT 58.532 38.462 0.00 0.00 0.00 1.28
4908 5583 6.845908 ACAGATACTCCCTCCGTAACTAATA 58.154 40.000 0.00 0.00 0.00 0.98
4909 5584 5.703310 ACAGATACTCCCTCCGTAACTAAT 58.297 41.667 0.00 0.00 0.00 1.73
4910 5585 5.121380 ACAGATACTCCCTCCGTAACTAA 57.879 43.478 0.00 0.00 0.00 2.24
4911 5586 4.785346 ACAGATACTCCCTCCGTAACTA 57.215 45.455 0.00 0.00 0.00 2.24
4912 5587 3.666345 ACAGATACTCCCTCCGTAACT 57.334 47.619 0.00 0.00 0.00 2.24
4913 5588 3.181478 CCAACAGATACTCCCTCCGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
4914 5589 3.028850 CCAACAGATACTCCCTCCGTAA 58.971 50.000 0.00 0.00 0.00 3.18
4915 5590 2.242965 TCCAACAGATACTCCCTCCGTA 59.757 50.000 0.00 0.00 0.00 4.02
4916 5591 1.006758 TCCAACAGATACTCCCTCCGT 59.993 52.381 0.00 0.00 0.00 4.69
4917 5592 1.776662 TCCAACAGATACTCCCTCCG 58.223 55.000 0.00 0.00 0.00 4.63
4918 5593 4.779993 AATTCCAACAGATACTCCCTCC 57.220 45.455 0.00 0.00 0.00 4.30
4919 5594 6.650120 TGTTAATTCCAACAGATACTCCCTC 58.350 40.000 0.00 0.00 33.55 4.30
4920 5595 6.636454 TGTTAATTCCAACAGATACTCCCT 57.364 37.500 0.00 0.00 33.55 4.20
4921 5596 7.012421 GTGATGTTAATTCCAACAGATACTCCC 59.988 40.741 0.72 0.00 41.48 4.30
4922 5597 7.770897 AGTGATGTTAATTCCAACAGATACTCC 59.229 37.037 0.72 0.00 41.48 3.85
4923 5598 8.607459 CAGTGATGTTAATTCCAACAGATACTC 58.393 37.037 0.72 0.00 41.48 2.59
4924 5599 8.321353 TCAGTGATGTTAATTCCAACAGATACT 58.679 33.333 0.72 2.42 41.48 2.12
4925 5600 8.492673 TCAGTGATGTTAATTCCAACAGATAC 57.507 34.615 0.72 0.57 41.48 2.24
4926 5601 9.513906 TTTCAGTGATGTTAATTCCAACAGATA 57.486 29.630 0.00 0.00 41.48 1.98
4968 5643 7.047460 AGAGATTGAACTTGCAGTGATTTTT 57.953 32.000 0.00 0.00 0.00 1.94
4969 5644 6.645790 AGAGATTGAACTTGCAGTGATTTT 57.354 33.333 0.00 0.00 0.00 1.82
4970 5645 6.128445 CGTAGAGATTGAACTTGCAGTGATTT 60.128 38.462 0.00 0.00 0.00 2.17
4971 5646 5.349817 CGTAGAGATTGAACTTGCAGTGATT 59.650 40.000 0.00 0.00 0.00 2.57
4998 5673 4.785301 AGTTGGTGCCTCGTACTACTATA 58.215 43.478 0.00 0.00 0.00 1.31
5042 5720 8.017418 AGATTCCTTTCTCCAGATTACTACTG 57.983 38.462 0.00 0.00 35.43 2.74
5082 5760 4.743955 GCAGTCTTCCAGGACTAAACAGTT 60.744 45.833 0.00 0.00 43.75 3.16
5084 5762 3.330267 GCAGTCTTCCAGGACTAAACAG 58.670 50.000 0.00 0.00 43.75 3.16
5095 5773 0.320374 CCTAACCACGCAGTCTTCCA 59.680 55.000 0.00 0.00 41.61 3.53
5106 5784 0.865769 CACAAGCACGACCTAACCAC 59.134 55.000 0.00 0.00 0.00 4.16
5160 5839 8.738106 ACACTACTAGTACACTAATGTTCCTTC 58.262 37.037 0.00 0.00 40.48 3.46
5169 5848 9.784531 AGACAAGTAACACTACTAGTACACTAA 57.215 33.333 0.00 0.00 37.39 2.24
5170 5849 9.784531 AAGACAAGTAACACTACTAGTACACTA 57.215 33.333 0.00 0.00 37.39 2.74
5171 5850 8.688747 AAGACAAGTAACACTACTAGTACACT 57.311 34.615 0.00 0.00 37.39 3.55
5172 5851 7.743838 CGAAGACAAGTAACACTACTAGTACAC 59.256 40.741 0.00 0.00 37.39 2.90
5174 5853 7.801752 ACGAAGACAAGTAACACTACTAGTAC 58.198 38.462 0.00 0.00 37.39 2.73
5178 5857 7.934457 AGAAACGAAGACAAGTAACACTACTA 58.066 34.615 0.00 0.00 37.39 1.82
5185 5866 7.848491 ACATTGTAGAAACGAAGACAAGTAAC 58.152 34.615 0.00 0.00 35.41 2.50
5188 5869 6.281405 AGACATTGTAGAAACGAAGACAAGT 58.719 36.000 0.00 0.00 35.41 3.16
5197 5878 4.503910 TCATGGGAGACATTGTAGAAACG 58.496 43.478 0.00 0.00 37.84 3.60
5207 5888 2.379907 ACCAAACCTTCATGGGAGACAT 59.620 45.455 0.00 0.00 41.17 3.06
5218 5899 0.238553 GCGCTCAAGACCAAACCTTC 59.761 55.000 0.00 0.00 0.00 3.46
5220 5901 1.961277 CGCGCTCAAGACCAAACCT 60.961 57.895 5.56 0.00 0.00 3.50
5222 5903 2.556287 CCGCGCTCAAGACCAAAC 59.444 61.111 5.56 0.00 0.00 2.93
5224 5905 4.617520 TGCCGCGCTCAAGACCAA 62.618 61.111 5.56 0.00 0.00 3.67
5228 5909 3.989787 TCAGTGCCGCGCTCAAGA 61.990 61.111 5.56 2.56 0.00 3.02
5229 5910 3.782244 GTCAGTGCCGCGCTCAAG 61.782 66.667 5.56 0.09 0.00 3.02
5236 5917 0.235926 GAGTTTTCTGTCAGTGCCGC 59.764 55.000 0.00 0.00 0.00 6.53
5244 5925 6.808212 CAGATCAAGAGAGAGAGTTTTCTGTC 59.192 42.308 0.00 0.00 42.51 3.51
5248 5929 6.279513 TCCAGATCAAGAGAGAGAGTTTTC 57.720 41.667 0.00 0.00 0.00 2.29
5252 5933 4.099881 GCATTCCAGATCAAGAGAGAGAGT 59.900 45.833 0.00 0.00 0.00 3.24
5343 6028 2.272918 CTTGGCCCTCGTCTCGTCTC 62.273 65.000 0.00 0.00 0.00 3.36
5344 6029 2.282958 TTGGCCCTCGTCTCGTCT 60.283 61.111 0.00 0.00 0.00 4.18
5347 6032 2.564553 CTTCCTTGGCCCTCGTCTCG 62.565 65.000 0.00 0.00 0.00 4.04
5348 6033 1.219393 CTTCCTTGGCCCTCGTCTC 59.781 63.158 0.00 0.00 0.00 3.36
5349 6034 0.836400 TTCTTCCTTGGCCCTCGTCT 60.836 55.000 0.00 0.00 0.00 4.18
5352 6037 0.391793 GTCTTCTTCCTTGGCCCTCG 60.392 60.000 0.00 0.00 0.00 4.63
5355 6040 1.377333 CCGTCTTCTTCCTTGGCCC 60.377 63.158 0.00 0.00 0.00 5.80
5371 6056 1.736645 GACACACACGACATCCCCG 60.737 63.158 0.00 0.00 0.00 5.73
5381 6066 2.354656 TCGCTCGCTGACACACAC 60.355 61.111 0.00 0.00 0.00 3.82
5389 6074 3.001902 TAACACCCCTCGCTCGCTG 62.002 63.158 0.00 0.00 0.00 5.18
5390 6075 2.678934 TAACACCCCTCGCTCGCT 60.679 61.111 0.00 0.00 0.00 4.93
5408 6096 4.319261 CCGGTTTTGTTTCTTCTCCTAACG 60.319 45.833 0.00 0.00 0.00 3.18
5439 6127 0.179103 CCATTCCTTTCGGCAATGCC 60.179 55.000 15.52 15.52 46.75 4.40
5442 6130 1.094785 CGTCCATTCCTTTCGGCAAT 58.905 50.000 0.00 0.00 0.00 3.56
5444 6132 2.038269 GCGTCCATTCCTTTCGGCA 61.038 57.895 0.00 0.00 0.00 5.69
5583 6280 0.251430 TTTTCTAACCAAGCCCCCGG 60.251 55.000 0.00 0.00 0.00 5.73
5611 6309 0.111089 GCAAACAACACTCGAGCTCG 60.111 55.000 30.03 30.03 41.45 5.03
5613 6311 0.810031 ACGCAAACAACACTCGAGCT 60.810 50.000 13.61 0.00 0.00 4.09
5615 6313 2.452006 AAACGCAAACAACACTCGAG 57.548 45.000 11.84 11.84 0.00 4.04
5616 6314 2.931325 AGTAAACGCAAACAACACTCGA 59.069 40.909 0.00 0.00 0.00 4.04
5617 6315 3.277481 GAGTAAACGCAAACAACACTCG 58.723 45.455 0.00 0.00 0.00 4.18
5618 6316 3.277481 CGAGTAAACGCAAACAACACTC 58.723 45.455 0.00 0.00 0.00 3.51
5619 6317 2.031191 CCGAGTAAACGCAAACAACACT 59.969 45.455 0.00 0.00 0.00 3.55
5620 6318 2.223089 ACCGAGTAAACGCAAACAACAC 60.223 45.455 0.00 0.00 0.00 3.32
5621 6319 2.008329 ACCGAGTAAACGCAAACAACA 58.992 42.857 0.00 0.00 0.00 3.33
5622 6320 2.368685 CACCGAGTAAACGCAAACAAC 58.631 47.619 0.00 0.00 0.00 3.32
5623 6321 1.331138 CCACCGAGTAAACGCAAACAA 59.669 47.619 0.00 0.00 0.00 2.83
5635 6382 0.108329 CCGATAAGCAACCACCGAGT 60.108 55.000 0.00 0.00 0.00 4.18
5641 6388 6.646267 ACTAATTAAGACCGATAAGCAACCA 58.354 36.000 0.00 0.00 0.00 3.67
5649 6396 5.068198 ACGCAGGAACTAATTAAGACCGATA 59.932 40.000 0.00 0.00 36.02 2.92
5650 6397 4.142004 ACGCAGGAACTAATTAAGACCGAT 60.142 41.667 0.00 0.00 36.02 4.18
5652 6399 3.518590 ACGCAGGAACTAATTAAGACCG 58.481 45.455 0.00 0.00 36.02 4.79
5653 6400 4.436986 GCAACGCAGGAACTAATTAAGACC 60.437 45.833 0.00 0.00 36.02 3.85
5654 6401 4.153475 TGCAACGCAGGAACTAATTAAGAC 59.847 41.667 0.00 0.00 36.02 3.01
5655 6402 4.320023 TGCAACGCAGGAACTAATTAAGA 58.680 39.130 0.00 0.00 36.02 2.10
5656 6403 4.678509 TGCAACGCAGGAACTAATTAAG 57.321 40.909 0.00 0.00 36.02 1.85
5673 6420 2.123338 AAGCAAGGCCCACTGCAA 60.123 55.556 20.66 0.00 43.89 4.08
5676 6423 0.032540 GTTTGAAGCAAGGCCCACTG 59.967 55.000 0.00 0.00 0.00 3.66
5728 6475 2.542411 CGCTTCTTCCATAGCATTTGGC 60.542 50.000 0.00 0.00 45.30 4.52
5828 6591 1.673920 GGACCAGTTCAGTCGCAAAAA 59.326 47.619 0.00 0.00 34.97 1.94
5829 6592 1.134220 AGGACCAGTTCAGTCGCAAAA 60.134 47.619 0.00 0.00 34.97 2.44
5830 6593 0.468226 AGGACCAGTTCAGTCGCAAA 59.532 50.000 0.00 0.00 34.97 3.68
5831 6594 0.033504 GAGGACCAGTTCAGTCGCAA 59.966 55.000 0.00 0.00 34.97 4.85
5832 6595 1.666011 GAGGACCAGTTCAGTCGCA 59.334 57.895 0.00 0.00 34.97 5.10
5833 6596 1.079750 GGAGGACCAGTTCAGTCGC 60.080 63.158 0.00 0.00 34.97 5.19
5834 6597 1.213013 CGGAGGACCAGTTCAGTCG 59.787 63.158 0.00 0.00 34.97 4.18
5835 6598 0.680061 AACGGAGGACCAGTTCAGTC 59.320 55.000 0.00 0.00 35.59 3.51
5836 6599 1.129058 AAACGGAGGACCAGTTCAGT 58.871 50.000 0.00 0.00 34.06 3.41
5837 6600 1.873591 CAAAACGGAGGACCAGTTCAG 59.126 52.381 0.00 0.00 34.06 3.02
5838 6601 1.210967 ACAAAACGGAGGACCAGTTCA 59.789 47.619 0.00 0.00 34.06 3.18
5839 6602 1.963172 ACAAAACGGAGGACCAGTTC 58.037 50.000 0.00 0.00 34.06 3.01
5916 6679 4.109675 GTGCCCCCACCTGCGTAT 62.110 66.667 0.00 0.00 35.92 3.06
5964 6727 2.555547 GCCCACAAGTCAGTGCCAC 61.556 63.158 0.00 0.00 38.18 5.01
5973 6736 4.400529 AAAAAGAAATTCGCCCACAAGT 57.599 36.364 0.00 0.00 0.00 3.16
6008 6771 0.326143 AAACCCCCAACCTGCTTTGT 60.326 50.000 0.00 0.00 0.00 2.83
6050 6813 3.706373 GTGAGCCGAGGGGAGCAA 61.706 66.667 0.00 0.00 34.06 3.91
6067 6830 3.058160 CCCCACTTTGCCAGCTCG 61.058 66.667 0.00 0.00 0.00 5.03
6068 6831 2.677875 CCCCCACTTTGCCAGCTC 60.678 66.667 0.00 0.00 0.00 4.09
6069 6832 3.185203 TCCCCCACTTTGCCAGCT 61.185 61.111 0.00 0.00 0.00 4.24
6070 6833 2.677875 CTCCCCCACTTTGCCAGC 60.678 66.667 0.00 0.00 0.00 4.85
6071 6834 1.604593 CACTCCCCCACTTTGCCAG 60.605 63.158 0.00 0.00 0.00 4.85
6072 6835 2.520458 CACTCCCCCACTTTGCCA 59.480 61.111 0.00 0.00 0.00 4.92
6073 6836 2.991540 GCACTCCCCCACTTTGCC 60.992 66.667 0.00 0.00 0.00 4.52
6074 6837 1.398958 TTTGCACTCCCCCACTTTGC 61.399 55.000 0.00 0.00 0.00 3.68
6075 6838 0.389025 GTTTGCACTCCCCCACTTTG 59.611 55.000 0.00 0.00 0.00 2.77
6076 6839 1.106944 CGTTTGCACTCCCCCACTTT 61.107 55.000 0.00 0.00 0.00 2.66
6077 6840 1.528309 CGTTTGCACTCCCCCACTT 60.528 57.895 0.00 0.00 0.00 3.16
6078 6841 2.113139 CGTTTGCACTCCCCCACT 59.887 61.111 0.00 0.00 0.00 4.00
6079 6842 2.112297 TCGTTTGCACTCCCCCAC 59.888 61.111 0.00 0.00 0.00 4.61
6080 6843 2.112297 GTCGTTTGCACTCCCCCA 59.888 61.111 0.00 0.00 0.00 4.96
6081 6844 2.671963 GGTCGTTTGCACTCCCCC 60.672 66.667 0.00 0.00 0.00 5.40
6082 6845 2.671963 GGGTCGTTTGCACTCCCC 60.672 66.667 0.00 0.00 31.97 4.81
6083 6846 1.671379 GAGGGTCGTTTGCACTCCC 60.671 63.158 0.00 0.00 35.90 4.30
6084 6847 0.321653 ATGAGGGTCGTTTGCACTCC 60.322 55.000 0.00 0.00 0.00 3.85
6085 6848 0.798776 CATGAGGGTCGTTTGCACTC 59.201 55.000 0.00 0.00 0.00 3.51
6086 6849 0.108585 ACATGAGGGTCGTTTGCACT 59.891 50.000 0.00 0.00 0.00 4.40
6087 6850 0.951558 AACATGAGGGTCGTTTGCAC 59.048 50.000 0.00 0.00 0.00 4.57
6088 6851 1.336440 CAAACATGAGGGTCGTTTGCA 59.664 47.619 0.00 0.00 41.95 4.08
6089 6852 1.335872 CCAAACATGAGGGTCGTTTGC 60.336 52.381 0.00 0.00 45.13 3.68
6090 6853 1.269448 CCCAAACATGAGGGTCGTTTG 59.731 52.381 0.00 7.15 45.73 2.93
6091 6854 1.616159 CCCAAACATGAGGGTCGTTT 58.384 50.000 0.00 0.00 40.34 3.60
6092 6855 3.339547 CCCAAACATGAGGGTCGTT 57.660 52.632 0.00 0.00 40.34 3.85
6098 6861 2.008268 GCATCCGCCCAAACATGAGG 62.008 60.000 0.00 0.00 0.00 3.86
6099 6862 1.314534 TGCATCCGCCCAAACATGAG 61.315 55.000 0.00 0.00 37.32 2.90
6100 6863 1.303970 TGCATCCGCCCAAACATGA 60.304 52.632 0.00 0.00 37.32 3.07
6101 6864 1.153784 GTGCATCCGCCCAAACATG 60.154 57.895 0.00 0.00 37.32 3.21
6102 6865 2.350458 GGTGCATCCGCCCAAACAT 61.350 57.895 0.00 0.00 37.32 2.71
6103 6866 2.988684 GGTGCATCCGCCCAAACA 60.989 61.111 0.00 0.00 37.32 2.83
6104 6867 2.676471 AGGTGCATCCGCCCAAAC 60.676 61.111 0.00 0.00 42.81 2.93
6105 6868 2.361104 GAGGTGCATCCGCCCAAA 60.361 61.111 0.00 0.00 42.81 3.28
6110 6873 1.680338 AAATTAGGAGGTGCATCCGC 58.320 50.000 0.00 0.00 44.65 5.54
6111 6874 3.545703 AGAAAATTAGGAGGTGCATCCG 58.454 45.455 0.00 0.00 44.65 4.18
6112 6875 4.706962 ACAAGAAAATTAGGAGGTGCATCC 59.293 41.667 0.00 0.00 39.89 3.51
6113 6876 5.904362 ACAAGAAAATTAGGAGGTGCATC 57.096 39.130 0.00 0.00 0.00 3.91
6114 6877 7.775053 TTAACAAGAAAATTAGGAGGTGCAT 57.225 32.000 0.00 0.00 0.00 3.96
6115 6878 7.589958 TTTAACAAGAAAATTAGGAGGTGCA 57.410 32.000 0.00 0.00 0.00 4.57
6116 6879 9.489084 AAATTTAACAAGAAAATTAGGAGGTGC 57.511 29.630 0.00 0.00 35.91 5.01
6126 6889 9.573133 CATCCGCTAGAAATTTAACAAGAAAAT 57.427 29.630 0.00 0.00 0.00 1.82
6127 6890 8.788806 TCATCCGCTAGAAATTTAACAAGAAAA 58.211 29.630 0.00 0.00 0.00 2.29
6128 6891 8.330466 TCATCCGCTAGAAATTTAACAAGAAA 57.670 30.769 0.00 0.00 0.00 2.52
6129 6892 7.915293 TCATCCGCTAGAAATTTAACAAGAA 57.085 32.000 0.00 0.00 0.00 2.52
6130 6893 7.552687 ACATCATCCGCTAGAAATTTAACAAGA 59.447 33.333 0.00 0.00 0.00 3.02
6131 6894 7.697691 ACATCATCCGCTAGAAATTTAACAAG 58.302 34.615 0.00 0.00 0.00 3.16
6132 6895 7.624360 ACATCATCCGCTAGAAATTTAACAA 57.376 32.000 0.00 0.00 0.00 2.83
6133 6896 8.725405 TTACATCATCCGCTAGAAATTTAACA 57.275 30.769 0.00 0.00 0.00 2.41
6134 6897 9.813080 GATTACATCATCCGCTAGAAATTTAAC 57.187 33.333 0.00 0.00 0.00 2.01
6135 6898 8.708742 CGATTACATCATCCGCTAGAAATTTAA 58.291 33.333 0.00 0.00 0.00 1.52
6136 6899 7.870954 ACGATTACATCATCCGCTAGAAATTTA 59.129 33.333 0.00 0.00 0.00 1.40
6137 6900 6.706270 ACGATTACATCATCCGCTAGAAATTT 59.294 34.615 0.00 0.00 0.00 1.82
6138 6901 6.223852 ACGATTACATCATCCGCTAGAAATT 58.776 36.000 0.00 0.00 0.00 1.82
6139 6902 5.784177 ACGATTACATCATCCGCTAGAAAT 58.216 37.500 0.00 0.00 0.00 2.17
6140 6903 5.196341 ACGATTACATCATCCGCTAGAAA 57.804 39.130 0.00 0.00 0.00 2.52
6141 6904 4.848562 ACGATTACATCATCCGCTAGAA 57.151 40.909 0.00 0.00 0.00 2.10
6142 6905 4.848562 AACGATTACATCATCCGCTAGA 57.151 40.909 0.00 0.00 0.00 2.43
6143 6906 7.328493 TCAAATAACGATTACATCATCCGCTAG 59.672 37.037 0.00 0.00 0.00 3.42
6144 6907 7.149307 TCAAATAACGATTACATCATCCGCTA 58.851 34.615 0.00 0.00 0.00 4.26
6145 6908 5.989168 TCAAATAACGATTACATCATCCGCT 59.011 36.000 0.00 0.00 0.00 5.52
6146 6909 6.073765 ACTCAAATAACGATTACATCATCCGC 60.074 38.462 0.00 0.00 0.00 5.54
6147 6910 7.408132 ACTCAAATAACGATTACATCATCCG 57.592 36.000 0.00 0.00 0.00 4.18
6196 6959 1.480545 AGCCGGTTGAAAGCTGTTTTT 59.519 42.857 1.90 0.00 34.99 1.94
6197 6960 1.111277 AGCCGGTTGAAAGCTGTTTT 58.889 45.000 1.90 0.00 34.99 2.43
6198 6961 1.607148 GTAGCCGGTTGAAAGCTGTTT 59.393 47.619 1.90 0.00 37.45 2.83
6199 6962 1.235724 GTAGCCGGTTGAAAGCTGTT 58.764 50.000 1.90 0.00 37.45 3.16
6200 6963 0.605589 GGTAGCCGGTTGAAAGCTGT 60.606 55.000 1.90 0.00 37.45 4.40
6201 6964 1.305930 GGGTAGCCGGTTGAAAGCTG 61.306 60.000 1.90 0.00 37.45 4.24
6202 6965 1.002502 GGGTAGCCGGTTGAAAGCT 60.003 57.895 1.90 0.00 40.66 3.74
6203 6966 2.044555 GGGGTAGCCGGTTGAAAGC 61.045 63.158 1.90 0.00 0.00 3.51
6204 6967 0.250989 TTGGGGTAGCCGGTTGAAAG 60.251 55.000 1.90 0.00 0.00 2.62
6205 6968 0.537828 GTTGGGGTAGCCGGTTGAAA 60.538 55.000 1.90 0.00 0.00 2.69
6206 6969 1.073548 GTTGGGGTAGCCGGTTGAA 59.926 57.895 1.90 0.00 0.00 2.69
6207 6970 2.751688 GTTGGGGTAGCCGGTTGA 59.248 61.111 1.90 0.00 0.00 3.18
6208 6971 2.744709 CGTTGGGGTAGCCGGTTG 60.745 66.667 1.90 0.00 0.00 3.77
6209 6972 4.710167 GCGTTGGGGTAGCCGGTT 62.710 66.667 1.90 0.00 0.00 4.44
6225 6988 4.450122 CACATCACAGCGCGTGGC 62.450 66.667 24.69 0.00 46.36 5.01
6228 6991 4.687215 AGCCACATCACAGCGCGT 62.687 61.111 8.43 0.00 0.00 6.01
6229 6992 3.857854 GAGCCACATCACAGCGCG 61.858 66.667 0.00 0.00 0.00 6.86
6230 6993 2.435586 AGAGCCACATCACAGCGC 60.436 61.111 0.00 0.00 0.00 5.92
6231 6994 1.812922 GGAGAGCCACATCACAGCG 60.813 63.158 0.00 0.00 0.00 5.18
6232 6995 1.812922 CGGAGAGCCACATCACAGC 60.813 63.158 0.00 0.00 0.00 4.40
6233 6996 0.459237 GTCGGAGAGCCACATCACAG 60.459 60.000 0.00 0.00 36.95 3.66
6234 6997 0.900182 AGTCGGAGAGCCACATCACA 60.900 55.000 0.00 0.00 36.95 3.58
6235 6998 0.179124 GAGTCGGAGAGCCACATCAC 60.179 60.000 0.00 0.00 36.95 3.06
6248 7011 1.711060 GAGAGACGAGGCAGAGTCGG 61.711 65.000 0.00 0.00 41.88 4.79
6253 7016 3.134792 GCGGAGAGACGAGGCAGA 61.135 66.667 0.00 0.00 35.47 4.26
6254 7017 4.200283 GGCGGAGAGACGAGGCAG 62.200 72.222 0.00 0.00 35.47 4.85
6258 7021 1.137825 GTGAAGGCGGAGAGACGAG 59.862 63.158 0.00 0.00 35.47 4.18
6290 7611 1.963338 AAGAGGCTGCGTTGCTGTC 60.963 57.895 0.00 0.00 32.40 3.51
6293 7614 3.360340 GCAAGAGGCTGCGTTGCT 61.360 61.111 19.57 1.41 42.70 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.