AutoCloner

Multiple sequence alignment - TraesCS3D01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G266500	chr3D	100.000	2552	0	0	1	2552	370069070	370071621	0.000000e+00	4713
1	TraesCS3D01G266500	chr3D	91.698	1891	97	28	574	2461	527509677	527511510	0.000000e+00	2567
2	TraesCS3D01G266500	chr3D	94.584	1551	74	8	919	2461	447973270	447971722	0.000000e+00	2390
3	TraesCS3D01G266500	chr3D	93.392	1029	46	9	1542	2552	4247200	4248224	0.000000e+00	1504
4	TraesCS3D01G266500	chr3D	92.411	896	50	8	1670	2552	519944576	519943686	0.000000e+00	1262
5	TraesCS3D01G266500	chr3D	93.357	572	36	2	1	572	170630352	170630921	0.000000e+00	845
6	TraesCS3D01G266500	chr3D	91.482	587	41	8	1	581	442272333	442272916	0.000000e+00	798
7	TraesCS3D01G266500	chr3D	94.444	252	10	3	2302	2552	25096015	25095767	3.980000e-103	385
8	TraesCS3D01G266500	chr7D	93.230	1994	94	22	571	2552	623570815	623572779	0.000000e+00	2896
9	TraesCS3D01G266500	chr7D	92.597	1864	113	13	576	2421	90563634	90561778	0.000000e+00	2654
10	TraesCS3D01G266500	chr6D	93.091	1896	102	16	574	2461	312544302	312542428	0.000000e+00	2748
11	TraesCS3D01G266500	chr6D	91.922	1993	115	19	574	2552	323166697	323168657	0.000000e+00	2747
12	TraesCS3D01G266500	chr6D	94.090	1692	85	12	868	2552	329896504	329894821	0.000000e+00	2556
13	TraesCS3D01G266500	chr1D	92.036	1896	97	9	573	2461	464037592	464039440	0.000000e+00	2615
14	TraesCS3D01G266500	chr3A	91.863	1868	126	12	572	2418	593512226	593514088	0.000000e+00	2584
15	TraesCS3D01G266500	chr3A	92.522	575	39	3	1	573	630962127	630962699	0.000000e+00	821
16	TraesCS3D01G266500	chrUn	92.597	1810	95	24	617	2418	43407879	43409657	0.000000e+00	2564
17	TraesCS3D01G266500	chrUn	93.478	92	3	2	882	971	43129249	43129159	1.590000e-27	134
18	TraesCS3D01G266500	chr7B	90.045	1999	125	12	571	2552	643463720	643465661	0.000000e+00	2521
19	TraesCS3D01G266500	chr7A	90.591	1860	148	17	574	2418	709273716	709275563	0.000000e+00	2440
20	TraesCS3D01G266500	chr4B	90.184	1742	146	16	574	2305	566431524	566429798	0.000000e+00	2246
21	TraesCS3D01G266500	chr4B	90.220	409	28	8	572	971	660380885	660380480	8.090000e-145	523
22	TraesCS3D01G266500	chr2D	92.609	920	50	8	574	1493	572809868	572810769	0.000000e+00	1306
23	TraesCS3D01G266500	chr2D	92.348	575	41	2	1	573	290413901	290414474	0.000000e+00	815
24	TraesCS3D01G266500	chr2D	92.147	573	43	2	1	573	200242012	200241442	0.000000e+00	808
25	TraesCS3D01G266500	chr2D	91.595	583	43	5	1	581	427622736	427623314	0.000000e+00	800
26	TraesCS3D01G266500	chr5A	92.321	573	43	1	1	573	645790907	645791478	0.000000e+00	813
27	TraesCS3D01G266500	chr5B	92.443	569	41	2	1	568	196697978	196698545	0.000000e+00	811
28	TraesCS3D01G266500	chr5B	87.706	667	76	5	1	664	452077715	452078378	0.000000e+00	773

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G266500	chr3D	370069070	370071621	2551	False	4713	4713	100.000	1	2552	1	chr3D.!!$F3	2551
1	TraesCS3D01G266500	chr3D	527509677	527511510	1833	False	2567	2567	91.698	574	2461	1	chr3D.!!$F5	1887
2	TraesCS3D01G266500	chr3D	447971722	447973270	1548	True	2390	2390	94.584	919	2461	1	chr3D.!!$R2	1542
3	TraesCS3D01G266500	chr3D	4247200	4248224	1024	False	1504	1504	93.392	1542	2552	1	chr3D.!!$F1	1010
4	TraesCS3D01G266500	chr3D	519943686	519944576	890	True	1262	1262	92.411	1670	2552	1	chr3D.!!$R3	882
5	TraesCS3D01G266500	chr3D	170630352	170630921	569	False	845	845	93.357	1	572	1	chr3D.!!$F2	571
6	TraesCS3D01G266500	chr3D	442272333	442272916	583	False	798	798	91.482	1	581	1	chr3D.!!$F4	580
7	TraesCS3D01G266500	chr7D	623570815	623572779	1964	False	2896	2896	93.230	571	2552	1	chr7D.!!$F1	1981
8	TraesCS3D01G266500	chr7D	90561778	90563634	1856	True	2654	2654	92.597	576	2421	1	chr7D.!!$R1	1845
9	TraesCS3D01G266500	chr6D	312542428	312544302	1874	True	2748	2748	93.091	574	2461	1	chr6D.!!$R1	1887
10	TraesCS3D01G266500	chr6D	323166697	323168657	1960	False	2747	2747	91.922	574	2552	1	chr6D.!!$F1	1978
11	TraesCS3D01G266500	chr6D	329894821	329896504	1683	True	2556	2556	94.090	868	2552	1	chr6D.!!$R2	1684
12	TraesCS3D01G266500	chr1D	464037592	464039440	1848	False	2615	2615	92.036	573	2461	1	chr1D.!!$F1	1888
13	TraesCS3D01G266500	chr3A	593512226	593514088	1862	False	2584	2584	91.863	572	2418	1	chr3A.!!$F1	1846
14	TraesCS3D01G266500	chr3A	630962127	630962699	572	False	821	821	92.522	1	573	1	chr3A.!!$F2	572
15	TraesCS3D01G266500	chrUn	43407879	43409657	1778	False	2564	2564	92.597	617	2418	1	chrUn.!!$F1	1801
16	TraesCS3D01G266500	chr7B	643463720	643465661	1941	False	2521	2521	90.045	571	2552	1	chr7B.!!$F1	1981
17	TraesCS3D01G266500	chr7A	709273716	709275563	1847	False	2440	2440	90.591	574	2418	1	chr7A.!!$F1	1844
18	TraesCS3D01G266500	chr4B	566429798	566431524	1726	True	2246	2246	90.184	574	2305	1	chr4B.!!$R1	1731
19	TraesCS3D01G266500	chr2D	572809868	572810769	901	False	1306	1306	92.609	574	1493	1	chr2D.!!$F3	919
20	TraesCS3D01G266500	chr2D	290413901	290414474	573	False	815	815	92.348	1	573	1	chr2D.!!$F1	572
21	TraesCS3D01G266500	chr2D	200241442	200242012	570	True	808	808	92.147	1	573	1	chr2D.!!$R1	572
22	TraesCS3D01G266500	chr2D	427622736	427623314	578	False	800	800	91.595	1	581	1	chr2D.!!$F2	580
23	TraesCS3D01G266500	chr5A	645790907	645791478	571	False	813	813	92.321	1	573	1	chr5A.!!$F1	572
24	TraesCS3D01G266500	chr5B	196697978	196698545	567	False	811	811	92.443	1	568	1	chr5B.!!$F1	567
25	TraesCS3D01G266500	chr5B	452077715	452078378	663	False	773	773	87.706	1	664	1	chr5B.!!$F2	663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
878	884	0.029567	GTGACCACGGCGATAGAGAG	59.97	60.0	16.62	0.0	39.76	3.2	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1812	2024	1.27055	GAATGGGCCTAATTGGATGCG	59.729	52.381	4.53	0.0	38.35	4.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
188	190	7.928908	TGTGTGCATGAAGTTTTTAAGATTC	57.071	32.000	0.00	0.00	0.00	2.52
189	191	6.922957	TGTGTGCATGAAGTTTTTAAGATTCC	59.077	34.615	0.00	0.00	0.00	3.01
192	194	5.102313	GCATGAAGTTTTTAAGATTCCGGG	58.898	41.667	0.00	0.00	0.00	5.73
195	197	6.963083	TGAAGTTTTTAAGATTCCGGGAAA	57.037	33.333	14.45	0.00	0.00	3.13
197	199	6.548251	TGAAGTTTTTAAGATTCCGGGAAACT	59.452	34.615	14.45	13.80	37.43	2.66
199	201	8.645814	AAGTTTTTAAGATTCCGGGAAACTAT	57.354	30.769	18.50	11.76	35.51	2.12
200	202	8.051901	AGTTTTTAAGATTCCGGGAAACTATG	57.948	34.615	18.50	0.00	34.99	2.23
201	203	7.886446	AGTTTTTAAGATTCCGGGAAACTATGA	59.114	33.333	18.50	6.15	34.99	2.15
202	204	8.683615	GTTTTTAAGATTCCGGGAAACTATGAT	58.316	33.333	18.50	7.02	0.00	2.45
203	205	9.908747	TTTTTAAGATTCCGGGAAACTATGATA	57.091	29.630	18.50	6.12	0.00	2.15
205	207	9.502091	TTTAAGATTCCGGGAAACTATGATATG	57.498	33.333	18.50	0.00	0.00	1.78
206	208	6.688073	AGATTCCGGGAAACTATGATATGT	57.312	37.500	16.96	0.00	0.00	2.29
207	209	6.467677	AGATTCCGGGAAACTATGATATGTG	58.532	40.000	16.96	0.00	0.00	3.21
208	210	5.880164	TTCCGGGAAACTATGATATGTGA	57.120	39.130	7.09	0.00	0.00	3.58
209	211	5.880164	TCCGGGAAACTATGATATGTGAA	57.120	39.130	0.00	0.00	0.00	3.18
227	229	7.678947	ATGTGAAGAATTAAGGAGTCACAAG	57.321	36.000	14.88	0.00	45.92	3.16
229	231	6.931281	TGTGAAGAATTAAGGAGTCACAAGAG	59.069	38.462	10.65	0.00	41.61	2.85
271	273	8.206126	CCCAAGGCATCCCTAATTAATATTTT	57.794	34.615	0.00	0.00	41.90	1.82
290	292	6.900568	ATTTTAAGAAGTCTCGAGCATCTG	57.099	37.500	7.81	0.00	0.00	2.90
295	297	1.473258	AGTCTCGAGCATCTGAGCTT	58.527	50.000	7.81	0.00	46.75	3.74
329	331	1.139498	TGGCATCCCACCCTTCTTCA	61.139	55.000	0.00	0.00	35.79	3.02
338	340	3.445096	CCCACCCTTCTTCATCAACAATC	59.555	47.826	0.00	0.00	0.00	2.67
348	350	5.294306	TCTTCATCAACAATCATCGGTTAGC	59.706	40.000	0.00	0.00	0.00	3.09
349	351	3.876914	TCATCAACAATCATCGGTTAGCC	59.123	43.478	0.00	0.00	0.00	3.93
358	360	0.460311	ATCGGTTAGCCTCGGTTGAG	59.540	55.000	0.00	0.00	42.18	3.02
385	387	8.514594	CCTAAGTTTTTGCTTCTTCACATGATA	58.485	33.333	0.00	0.00	0.00	2.15
398	400	9.662947	TTCTTCACATGATATATGCTATCCTTG	57.337	33.333	0.00	0.00	0.00	3.61
399	401	8.262933	TCTTCACATGATATATGCTATCCTTGG	58.737	37.037	0.00	0.00	0.00	3.61
411	413	9.812347	ATATGCTATCCTTGGAATGTCATTTTA	57.188	29.630	0.00	0.00	0.00	1.52
546	548	5.751243	TCTTTTTGGAGTAGTTTGTCAGC	57.249	39.130	0.00	0.00	0.00	4.26
554	556	4.142049	GGAGTAGTTTGTCAGCTGCTCTAT	60.142	45.833	9.47	0.00	41.85	1.98
568	570	5.988561	AGCTGCTCTATTGCTTCACTTATAC	59.011	40.000	0.00	0.00	32.61	1.47
626	630	1.165907	TGTGCTCAGTTTTGCCCTCG	61.166	55.000	0.00	0.00	0.00	4.63
628	632	2.335712	GCTCAGTTTTGCCCTCGGG	61.336	63.158	0.00	0.00	38.57	5.14
689	693	1.001597	GACTCGTTCCGTGAACTCTGT	60.002	52.381	12.80	9.18	40.05	3.41
691	695	1.001706	CTCGTTCCGTGAACTCTGTCA	60.002	52.381	12.80	0.00	40.05	3.58
728	732	3.077359	CCTTTTGACTCAGCCCTTACAG	58.923	50.000	0.00	0.00	0.00	2.74
776	782	1.443702	CGATCAGACCGTTGCACGA	60.444	57.895	9.75	0.00	46.05	4.35
826	832	4.400961	GCAGAGAGCCCTTGCGGT	62.401	66.667	0.00	0.00	44.33	5.68
854	860	0.108138	ATAAGTGGGCGACAGACAGC	60.108	55.000	1.61	0.00	0.00	4.40
855	861	2.486636	TAAGTGGGCGACAGACAGCG	62.487	60.000	1.61	0.00	0.00	5.18
862	868	4.357947	GACAGACAGCGGCGGTGA	62.358	66.667	41.06	0.00	34.87	4.02
863	869	4.664677	ACAGACAGCGGCGGTGAC	62.665	66.667	41.06	34.58	34.87	3.67
873	879	4.501714	GCGGTGACCACGGCGATA	62.502	66.667	16.62	0.00	45.27	2.92
874	880	2.278596	CGGTGACCACGGCGATAG	60.279	66.667	16.62	3.65	0.00	2.08
875	881	2.767445	CGGTGACCACGGCGATAGA	61.767	63.158	16.62	0.00	39.76	1.98
876	882	1.065928	GGTGACCACGGCGATAGAG	59.934	63.158	16.62	0.00	39.76	2.43
877	883	1.381928	GGTGACCACGGCGATAGAGA	61.382	60.000	16.62	0.00	39.76	3.10
878	884	0.029567	GTGACCACGGCGATAGAGAG	59.970	60.000	16.62	0.00	39.76	3.20
879	885	1.008309	GACCACGGCGATAGAGAGC	60.008	63.158	16.62	0.00	39.76	4.09
880	886	1.725557	GACCACGGCGATAGAGAGCA	61.726	60.000	16.62	0.00	39.76	4.26
992	1088	0.325671	TTGAGATCCCCTTCGGCTCT	60.326	55.000	0.00	0.00	0.00	4.09
1021	1117	1.913262	TCTTCCTCAAGCTCCCGCA	60.913	57.895	0.00	0.00	39.10	5.69
1060	1156	1.597854	CGGGCGCATATGGACATGT	60.598	57.895	10.83	0.00	0.00	3.21
1062	1158	0.534877	GGGCGCATATGGACATGTCA	60.535	55.000	26.47	13.45	0.00	3.58
1137	1233	1.411246	CCGAGGAACCATAATCGTCCA	59.589	52.381	0.00	0.00	33.43	4.02
1175	1271	1.493446	GAATGGGGTAAGAATCGGGGT	59.507	52.381	0.00	0.00	0.00	4.95
1338	1508	2.594013	TGCATGCTGCCACGAACA	60.594	55.556	20.33	0.00	44.23	3.18
1480	1675	5.115480	CACAAATACCAATACCCATTTGCC	58.885	41.667	5.95	0.00	40.43	4.52
1493	1688	3.262915	CCCATTTGCCATTACTTTTGGGA	59.737	43.478	0.00	0.00	44.36	4.37
1728	1934	4.859304	TCAATGAAATGCAGCTCTTTGT	57.141	36.364	18.29	0.00	31.82	2.83
1812	2024	1.477014	GGCTAGACTAATGGGCCAACC	60.477	57.143	11.89	0.00	42.08	3.77
1869	2085	6.025280	GCGTGTTTTTCTGTTTTCTGTTCTA	58.975	36.000	0.00	0.00	0.00	2.10
2106	2325	9.342308	TGGTGCCAAAAATAATGAACATTTTTA	57.658	25.926	5.37	0.00	41.38	1.52
2233	2456	3.431725	GCGTTTAGGGCTGCGCTT	61.432	61.111	24.50	8.98	45.48	4.68
2360	2639	5.214417	GTTTTGCATTGAAATTTTGGAGGC	58.786	37.500	0.00	0.00	0.00	4.70
2367	2663	5.565455	TTGAAATTTTGGAGGCTGGAAAT	57.435	34.783	0.00	0.00	0.00	2.17
2426	2747	6.015772	GTGGCACTTGGTTTAGGATTTAAAGA	60.016	38.462	11.13	0.00	0.00	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
137	139	8.908786	AACTCAACAAGAACTCATGAGATAAA	57.091	30.769	29.27	3.85	39.85	1.40
188	190	5.853936	TCTTCACATATCATAGTTTCCCGG	58.146	41.667	0.00	0.00	0.00	5.73
189	191	7.969536	ATTCTTCACATATCATAGTTTCCCG	57.030	36.000	0.00	0.00	0.00	5.14
199	201	8.539544	TGTGACTCCTTAATTCTTCACATATCA	58.460	33.333	0.00	0.00	38.68	2.15
200	202	8.948631	TGTGACTCCTTAATTCTTCACATATC	57.051	34.615	0.00	0.00	38.68	1.63
201	203	9.388506	CTTGTGACTCCTTAATTCTTCACATAT	57.611	33.333	3.26	0.00	42.07	1.78
202	204	8.593679	TCTTGTGACTCCTTAATTCTTCACATA	58.406	33.333	3.26	0.00	42.07	2.29
203	205	7.453393	TCTTGTGACTCCTTAATTCTTCACAT	58.547	34.615	3.26	0.00	42.07	3.21
204	206	6.826668	TCTTGTGACTCCTTAATTCTTCACA	58.173	36.000	0.00	0.00	41.11	3.58
205	207	6.128418	GCTCTTGTGACTCCTTAATTCTTCAC	60.128	42.308	0.00	0.00	35.08	3.18
206	208	5.934625	GCTCTTGTGACTCCTTAATTCTTCA	59.065	40.000	0.00	0.00	0.00	3.02
207	209	6.169800	AGCTCTTGTGACTCCTTAATTCTTC	58.830	40.000	0.00	0.00	0.00	2.87
208	210	6.120507	AGCTCTTGTGACTCCTTAATTCTT	57.879	37.500	0.00	0.00	0.00	2.52
209	211	5.247110	TGAGCTCTTGTGACTCCTTAATTCT	59.753	40.000	16.19	0.00	0.00	2.40
229	231	2.421399	GGCATCCCCAAGCTTGAGC	61.421	63.158	28.05	20.08	42.49	4.26
271	273	3.066064	GCTCAGATGCTCGAGACTTCTTA	59.934	47.826	18.75	10.60	0.00	2.10
277	279	1.558741	CAAGCTCAGATGCTCGAGAC	58.441	55.000	18.75	8.32	43.24	3.36
282	284	0.473326	ATCCCCAAGCTCAGATGCTC	59.527	55.000	0.00	0.00	43.24	4.26
310	312	1.139498	TGAAGAAGGGTGGGATGCCA	61.139	55.000	0.00	0.00	0.00	4.92
322	324	5.808042	ACCGATGATTGTTGATGAAGAAG	57.192	39.130	0.00	0.00	0.00	2.85
329	331	4.130118	GAGGCTAACCGATGATTGTTGAT	58.870	43.478	0.00	0.00	42.76	2.57
338	340	0.174845	TCAACCGAGGCTAACCGATG	59.825	55.000	0.00	0.00	42.76	3.84
348	350	2.474410	AAACTTAGGCTCAACCGAGG	57.526	50.000	0.00	0.00	46.52	4.63
349	351	3.609409	GCAAAAACTTAGGCTCAACCGAG	60.609	47.826	0.00	0.00	46.52	4.63
358	360	4.932146	TGTGAAGAAGCAAAAACTTAGGC	58.068	39.130	0.00	0.00	0.00	3.93
385	387	8.716674	AAAATGACATTCCAAGGATAGCATAT	57.283	30.769	0.05	0.00	0.00	1.78
387	389	8.716674	ATAAAATGACATTCCAAGGATAGCAT	57.283	30.769	0.05	0.00	0.00	3.79
398	400	9.949174	AAGCAAAACAAAATAAAATGACATTCC	57.051	25.926	0.05	0.00	0.00	3.01
462	464	9.677567	GTAACTATGTGAAGATTCTCTCTCATC	57.322	37.037	12.47	0.00	31.03	2.92
530	532	1.694150	AGCAGCTGACAAACTACTCCA	59.306	47.619	20.43	0.00	0.00	3.86
545	547	5.178438	GGTATAAGTGAAGCAATAGAGCAGC	59.822	44.000	0.00	0.00	36.85	5.25
546	548	6.520272	AGGTATAAGTGAAGCAATAGAGCAG	58.480	40.000	0.00	0.00	36.85	4.24
568	570	6.112734	GGCAAAAGGATAATTAACCCAAAGG	58.887	40.000	8.09	0.00	40.04	3.11
626	630	2.434185	TGAGCACGATTCGCACCC	60.434	61.111	5.86	0.00	0.00	4.61
628	632	0.512952	AAACTGAGCACGATTCGCAC	59.487	50.000	5.86	0.00	0.00	5.34
689	693	2.837947	AGGTTGACCTGATGGAGATGA	58.162	47.619	0.97	0.00	46.55	2.92
776	782	2.776526	TGGGTCCCACAAGCCACT	60.777	61.111	6.47	0.00	41.74	4.00
819	825	4.024893	CCACTTATATAGCACAACCGCAAG	60.025	45.833	0.00	0.00	0.00	4.01
826	832	3.133183	TGTCGCCCACTTATATAGCACAA	59.867	43.478	0.00	0.00	0.00	3.33
856	862	4.501714	TATCGCCGTGGTCACCGC	62.502	66.667	0.00	0.00	33.30	5.68
857	863	2.278596	CTATCGCCGTGGTCACCG	60.279	66.667	0.00	0.00	0.00	4.94
858	864	1.065928	CTCTATCGCCGTGGTCACC	59.934	63.158	0.00	0.00	0.00	4.02
859	865	0.029567	CTCTCTATCGCCGTGGTCAC	59.970	60.000	0.00	0.00	0.00	3.67
860	866	1.725557	GCTCTCTATCGCCGTGGTCA	61.726	60.000	0.00	0.00	0.00	4.02
861	867	1.008309	GCTCTCTATCGCCGTGGTC	60.008	63.158	0.00	0.00	0.00	4.02
862	868	1.753078	TGCTCTCTATCGCCGTGGT	60.753	57.895	0.00	0.00	0.00	4.16
863	869	1.299468	GTGCTCTCTATCGCCGTGG	60.299	63.158	0.00	0.00	0.00	4.94
864	870	1.655654	CGTGCTCTCTATCGCCGTG	60.656	63.158	0.00	0.00	0.00	4.94
865	871	2.716244	CGTGCTCTCTATCGCCGT	59.284	61.111	0.00	0.00	0.00	5.68
866	872	2.050895	CCGTGCTCTCTATCGCCG	60.051	66.667	0.00	0.00	0.00	6.46
867	873	2.355244	GCCGTGCTCTCTATCGCC	60.355	66.667	0.00	0.00	0.00	5.54
868	874	2.727647	CGCCGTGCTCTCTATCGC	60.728	66.667	0.00	0.00	0.00	4.58
869	875	2.050895	CCGCCGTGCTCTCTATCG	60.051	66.667	0.00	0.00	0.00	2.92
870	876	1.299468	CACCGCCGTGCTCTCTATC	60.299	63.158	0.00	0.00	32.04	2.08
871	877	1.753078	TCACCGCCGTGCTCTCTAT	60.753	57.895	0.00	0.00	40.04	1.98
872	878	2.360726	TCACCGCCGTGCTCTCTA	60.361	61.111	0.00	0.00	40.04	2.43
873	879	4.057428	GTCACCGCCGTGCTCTCT	62.057	66.667	0.00	0.00	40.04	3.10
992	1088	1.942776	TGAGGAAGACATGGAGCTCA	58.057	50.000	17.19	1.87	0.00	4.26
1051	1147	2.828520	AGACGAAGACTGACATGTCCAT	59.171	45.455	22.85	10.92	37.66	3.41
1062	1158	2.561885	CGCGGACAGACGAAGACT	59.438	61.111	0.00	0.00	35.47	3.24
1137	1233	4.083324	CCATTCTTGTTGCACACGTAGAAT	60.083	41.667	15.32	15.32	38.77	2.40
1493	1688	7.255104	CCAGTGCGATTACCATACATACAAATT	60.255	37.037	0.00	0.00	0.00	1.82
1812	2024	1.270550	GAATGGGCCTAATTGGATGCG	59.729	52.381	4.53	0.00	38.35	4.73
1909	2125	8.537728	TGTGGAATAATTCAATTAGCTTCCAT	57.462	30.769	20.80	0.00	41.87	3.41
2146	2369	5.885449	TTTGTTCATTTTCCACCCTTCAT	57.115	34.783	0.00	0.00	0.00	2.57
2178	2401	3.319198	GGTTCGAGTCCCCAGCCA	61.319	66.667	0.00	0.00	0.00	4.75
2233	2456	1.754803	CCATCTGTCCTAGCGGTTACA	59.245	52.381	0.00	0.00	0.00	2.41
2360	2639	3.922240	GCAGTGCAAACATACATTTCCAG	59.078	43.478	11.09	0.00	0.00	3.86
2367	2663	1.685148	TGTGGCAGTGCAAACATACA	58.315	45.000	18.61	8.69	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.