Multiple sequence alignment - TraesCS3D01G266100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G266100 chr3D 100.000 5555 0 0 1 5555 368962719 368957165 0.000000e+00 10259
1 TraesCS3D01G266100 chr3D 93.814 97 3 3 5170 5266 3309565 3309472 5.800000e-30 143
2 TraesCS3D01G266100 chr3D 97.143 70 1 1 2085 2154 368960504 368960436 3.520000e-22 117
3 TraesCS3D01G266100 chr3D 97.143 70 1 1 2216 2284 368960635 368960566 3.520000e-22 117
4 TraesCS3D01G266100 chr3B 94.993 4254 122 31 827 5017 479993009 479988784 0.000000e+00 6591
5 TraesCS3D01G266100 chr3B 86.659 847 91 14 1 828 367476904 367477747 0.000000e+00 918
6 TraesCS3D01G266100 chr3B 88.785 214 16 3 5059 5264 479988792 479988579 7.140000e-64 255
7 TraesCS3D01G266100 chr3B 97.143 70 1 1 2085 2154 479991595 479991527 3.520000e-22 117
8 TraesCS3D01G266100 chr3B 92.754 69 5 0 2216 2284 479991722 479991654 3.540000e-17 100
9 TraesCS3D01G266100 chr3A 94.013 3758 138 36 1538 5257 490343765 490340057 0.000000e+00 5613
10 TraesCS3D01G266100 chr3A 92.849 839 30 9 1 826 700229381 700230202 0.000000e+00 1190
11 TraesCS3D01G266100 chr3A 92.243 838 36 8 1 826 700208639 700207819 0.000000e+00 1160
12 TraesCS3D01G266100 chr3A 94.543 733 23 9 827 1548 490344525 490343799 0.000000e+00 1116
13 TraesCS3D01G266100 chr3A 95.699 93 1 3 5171 5262 38279397 38279307 4.480000e-31 147
14 TraesCS3D01G266100 chr3A 97.143 70 1 1 2216 2284 490343214 490343145 3.520000e-22 117
15 TraesCS3D01G266100 chr3A 95.714 70 2 1 2085 2154 490343075 490343007 1.640000e-20 111
16 TraesCS3D01G266100 chr6D 97.013 837 13 2 1 826 443752680 443751845 0.000000e+00 1397
17 TraesCS3D01G266100 chr6D 94.041 839 36 4 1 827 81109343 81108507 0.000000e+00 1260
18 TraesCS3D01G266100 chr2D 96.067 839 21 2 1 828 495103458 495102621 0.000000e+00 1356
19 TraesCS3D01G266100 chr1D 94.265 837 37 1 1 826 199671002 199670166 0.000000e+00 1269
20 TraesCS3D01G266100 chr6B 86.746 845 89 14 1 828 680133300 680132462 0.000000e+00 918
21 TraesCS3D01G266100 chr6B 85.697 846 71 28 1 827 687073752 687074566 0.000000e+00 846
22 TraesCS3D01G266100 chr2B 94.340 530 18 5 1 530 8492352 8492869 0.000000e+00 802
23 TraesCS3D01G266100 chr2B 86.471 510 43 14 337 826 504203160 504203663 2.280000e-148 536
24 TraesCS3D01G266100 chr2B 95.221 272 13 0 556 827 8493031 8493302 1.110000e-116 431
25 TraesCS3D01G266100 chr5B 84.430 456 49 13 384 823 507274980 507275429 3.980000e-116 429
26 TraesCS3D01G266100 chr4A 88.571 245 24 3 5310 5551 666537765 666537522 1.510000e-75 294
27 TraesCS3D01G266100 chr1A 95.876 97 2 2 5161 5256 441953962 441953867 7.450000e-34 156
28 TraesCS3D01G266100 chr1A 98.780 82 0 1 5175 5256 553707478 553707398 1.610000e-30 145
29 TraesCS3D01G266100 chr5A 97.727 88 1 1 5176 5262 650138192 650138105 3.470000e-32 150
30 TraesCS3D01G266100 chr1B 98.824 85 0 1 5174 5257 520682659 520682575 3.470000e-32 150
31 TraesCS3D01G266100 chr7D 97.619 84 1 1 5172 5255 535550317 535550399 5.800000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G266100 chr3D 368957165 368962719 5554 True 3497.666667 10259 98.095333 1 5555 3 chr3D.!!$R2 5554
1 TraesCS3D01G266100 chr3B 479988579 479993009 4430 True 1765.750000 6591 93.418750 827 5264 4 chr3B.!!$R1 4437
2 TraesCS3D01G266100 chr3B 367476904 367477747 843 False 918.000000 918 86.659000 1 828 1 chr3B.!!$F1 827
3 TraesCS3D01G266100 chr3A 490340057 490344525 4468 True 1739.250000 5613 95.353250 827 5257 4 chr3A.!!$R3 4430
4 TraesCS3D01G266100 chr3A 700229381 700230202 821 False 1190.000000 1190 92.849000 1 826 1 chr3A.!!$F1 825
5 TraesCS3D01G266100 chr3A 700207819 700208639 820 True 1160.000000 1160 92.243000 1 826 1 chr3A.!!$R2 825
6 TraesCS3D01G266100 chr6D 443751845 443752680 835 True 1397.000000 1397 97.013000 1 826 1 chr6D.!!$R2 825
7 TraesCS3D01G266100 chr6D 81108507 81109343 836 True 1260.000000 1260 94.041000 1 827 1 chr6D.!!$R1 826
8 TraesCS3D01G266100 chr2D 495102621 495103458 837 True 1356.000000 1356 96.067000 1 828 1 chr2D.!!$R1 827
9 TraesCS3D01G266100 chr1D 199670166 199671002 836 True 1269.000000 1269 94.265000 1 826 1 chr1D.!!$R1 825
10 TraesCS3D01G266100 chr6B 680132462 680133300 838 True 918.000000 918 86.746000 1 828 1 chr6B.!!$R1 827
11 TraesCS3D01G266100 chr6B 687073752 687074566 814 False 846.000000 846 85.697000 1 827 1 chr6B.!!$F1 826
12 TraesCS3D01G266100 chr2B 8492352 8493302 950 False 616.500000 802 94.780500 1 827 2 chr2B.!!$F2 826
13 TraesCS3D01G266100 chr2B 504203160 504203663 503 False 536.000000 536 86.471000 337 826 1 chr2B.!!$F1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 1072 1.037579 CCTGAAAAATCCCCTCCGCC 61.038 60.0 0.0 0.0 0.00 6.13 F
1314 1479 0.458889 TATTGTTTCCCGCTCCGTCG 60.459 55.0 0.0 0.0 0.00 5.12 F
3037 3298 2.159841 CGGTTGTGAACAAGTATCTGCG 60.160 50.0 0.0 0.0 36.39 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2248 2.417239 CTCGACACTAGAGGACACAGTC 59.583 54.545 0.00 0.0 32.38 3.51 R
3109 3370 2.761786 ATTGGATGCAGCACCCTTAT 57.238 45.000 7.53 0.0 0.00 1.73 R
5025 5307 0.179189 GGCTTGCTCAAAATCGTCCG 60.179 55.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
775 931 7.689299 TGATTTTAAGGATTGAGAGTTCAGGA 58.311 34.615 0.00 0.00 34.15 3.86
796 952 4.261197 GGATTTGATTTAGCTTTCGCCGAT 60.261 41.667 0.00 0.00 36.60 4.18
818 974 7.602265 CCGATAAATTCAAGGTTTGTTTTGGAT 59.398 33.333 0.00 0.00 0.00 3.41
916 1072 1.037579 CCTGAAAAATCCCCTCCGCC 61.038 60.000 0.00 0.00 0.00 6.13
997 1155 2.060980 GTCTGCTCGGGACCAGGAT 61.061 63.158 0.00 0.00 0.00 3.24
1195 1353 5.536161 CCATTTTCCTTTTCACAGGAGAGAA 59.464 40.000 0.00 0.00 44.18 2.87
1294 1459 1.634702 TTTGCCGTGCTTGTTTTGTC 58.365 45.000 0.00 0.00 0.00 3.18
1298 1463 2.621055 TGCCGTGCTTGTTTTGTCTATT 59.379 40.909 0.00 0.00 0.00 1.73
1300 1465 3.550030 GCCGTGCTTGTTTTGTCTATTGT 60.550 43.478 0.00 0.00 0.00 2.71
1301 1466 4.606961 CCGTGCTTGTTTTGTCTATTGTT 58.393 39.130 0.00 0.00 0.00 2.83
1302 1467 5.040635 CCGTGCTTGTTTTGTCTATTGTTT 58.959 37.500 0.00 0.00 0.00 2.83
1303 1468 5.173131 CCGTGCTTGTTTTGTCTATTGTTTC 59.827 40.000 0.00 0.00 0.00 2.78
1304 1469 5.173131 CGTGCTTGTTTTGTCTATTGTTTCC 59.827 40.000 0.00 0.00 0.00 3.13
1305 1470 5.462068 GTGCTTGTTTTGTCTATTGTTTCCC 59.538 40.000 0.00 0.00 0.00 3.97
1306 1471 4.679654 GCTTGTTTTGTCTATTGTTTCCCG 59.320 41.667 0.00 0.00 0.00 5.14
1307 1472 4.231718 TGTTTTGTCTATTGTTTCCCGC 57.768 40.909 0.00 0.00 0.00 6.13
1311 1476 1.287425 GTCTATTGTTTCCCGCTCCG 58.713 55.000 0.00 0.00 0.00 4.63
1314 1479 0.458889 TATTGTTTCCCGCTCCGTCG 60.459 55.000 0.00 0.00 0.00 5.12
1490 1692 3.664107 TCTCATTCAGGTCCTTGAAACG 58.336 45.455 7.55 3.93 40.21 3.60
1708 1954 4.032452 TTCATCTGCAGCGGCCCA 62.032 61.111 9.47 0.00 40.13 5.36
1956 2202 7.143340 CCATTAGTGGTATGCATTTGATTCAG 58.857 38.462 3.54 0.00 40.83 3.02
1985 2235 7.032377 AGTTCTTTTCAGTTTTCACCTCATC 57.968 36.000 0.00 0.00 0.00 2.92
1998 2248 8.607459 GTTTTCACCTCATCAGTTCATAGTATG 58.393 37.037 3.55 3.55 0.00 2.39
2326 2584 5.221303 CCATGAAAGTGGTTCTTGTGTGATT 60.221 40.000 0.00 0.00 38.92 2.57
2925 3186 7.540474 TGAACTGAGAGTACCTGACTAAAAT 57.460 36.000 0.00 0.00 39.06 1.82
3037 3298 2.159841 CGGTTGTGAACAAGTATCTGCG 60.160 50.000 0.00 0.00 36.39 5.18
3346 3608 0.761323 TTGGTGGAAGAGGTGACCGA 60.761 55.000 0.00 0.00 0.00 4.69
3772 4034 5.830457 TGGACTTATCTGACTAGTGATCCTG 59.170 44.000 0.00 0.00 0.00 3.86
3773 4035 5.830991 GGACTTATCTGACTAGTGATCCTGT 59.169 44.000 0.00 0.00 0.00 4.00
3792 4054 3.339141 TGTAGTGTGCACAACAGAACAA 58.661 40.909 23.59 0.00 40.26 2.83
3801 4063 4.749099 TGCACAACAGAACAATAAATTGGC 59.251 37.500 7.56 0.00 41.96 4.52
3947 4212 4.082026 CCTTTCCAGTTGGATCATTTGTCC 60.082 45.833 0.93 0.00 44.98 4.02
3987 4252 3.686726 CGAAAAGAGAGAAACCTCCATGG 59.313 47.826 4.97 4.97 42.93 3.66
3998 4263 1.129917 CCTCCATGGTCTCTGCATCT 58.870 55.000 12.58 0.00 0.00 2.90
4111 4376 4.797800 TCTCTCAAATCAGGACAGACAG 57.202 45.455 0.00 0.00 0.00 3.51
4235 4500 6.543831 AGTTGGACAAGGCTATCAAATCATAC 59.456 38.462 0.00 0.00 0.00 2.39
4294 4559 8.593679 TGATTGACTTATCCAAACTCTTCAGTA 58.406 33.333 0.00 0.00 30.14 2.74
4304 4569 6.764560 TCCAAACTCTTCAGTAAACCACTTAC 59.235 38.462 0.00 0.00 40.33 2.34
4319 4584 3.242543 CCACTTACATCAAGCATCGAAGC 60.243 47.826 4.05 4.05 37.83 3.86
4375 4640 3.445450 TGACTGTTCTCTCCTATGCTGTC 59.555 47.826 0.00 0.00 0.00 3.51
4379 4644 2.420058 TCTCTCCTATGCTGTCGACA 57.580 50.000 18.88 18.88 0.00 4.35
4542 4807 6.270463 ACATAGACGAAGAGAGGACTCCTATA 59.730 42.308 0.00 0.00 43.53 1.31
4592 4857 8.900781 ACATTCTGAAATGGATATCTTGACTTG 58.099 33.333 2.05 0.00 45.48 3.16
4748 5013 3.967332 AAGAAACTGGCATCCCATTTG 57.033 42.857 0.00 0.00 41.21 2.32
4826 5102 2.030027 TCTAGGGGCAATCATCCGAT 57.970 50.000 0.00 0.00 0.00 4.18
4848 5124 6.183359 CGATGCATTTCATTGTATACGCATTG 60.183 38.462 0.00 10.02 38.86 2.82
4907 5186 3.435105 TTTTGCAACATTCTCTTGCGT 57.565 38.095 0.00 0.00 45.92 5.24
4960 5242 6.182627 TCCGTTCATCTTAGTTACTACCAGA 58.817 40.000 0.00 0.00 0.00 3.86
5011 5293 8.577048 TCTGTTTGTAGCTAAGAGTGTACTAT 57.423 34.615 0.00 0.00 0.00 2.12
5012 5294 9.676861 TCTGTTTGTAGCTAAGAGTGTACTATA 57.323 33.333 0.00 0.00 0.00 1.31
5046 5328 1.168714 GACGATTTTGAGCAAGCCCT 58.831 50.000 0.00 0.00 0.00 5.19
5053 5335 4.789012 TTTTGAGCAAGCCCTTGATTAG 57.211 40.909 11.96 0.00 42.93 1.73
5139 5433 6.455360 TTTGTATTCCATTCTGAATGCCTC 57.545 37.500 22.00 11.59 36.77 4.70
5258 5552 2.716398 GGCGACGGAATATTTTTGCTC 58.284 47.619 0.00 0.00 0.00 4.26
5259 5553 2.354821 GGCGACGGAATATTTTTGCTCT 59.645 45.455 0.00 0.00 0.00 4.09
5262 5556 4.262976 GCGACGGAATATTTTTGCTCTTTG 59.737 41.667 0.00 0.00 0.00 2.77
5263 5557 5.627172 CGACGGAATATTTTTGCTCTTTGA 58.373 37.500 0.00 0.00 0.00 2.69
5264 5558 6.258160 CGACGGAATATTTTTGCTCTTTGAT 58.742 36.000 0.00 0.00 0.00 2.57
5265 5559 6.747280 CGACGGAATATTTTTGCTCTTTGATT 59.253 34.615 0.00 0.00 0.00 2.57
5266 5560 7.253420 CGACGGAATATTTTTGCTCTTTGATTG 60.253 37.037 0.00 0.00 0.00 2.67
5267 5561 7.601856 ACGGAATATTTTTGCTCTTTGATTGA 58.398 30.769 0.00 0.00 0.00 2.57
5268 5562 8.253113 ACGGAATATTTTTGCTCTTTGATTGAT 58.747 29.630 0.00 0.00 0.00 2.57
5269 5563 9.090692 CGGAATATTTTTGCTCTTTGATTGATT 57.909 29.630 0.00 0.00 0.00 2.57
5289 5583 7.930513 TGATTTACTACTAGATGAACATGCG 57.069 36.000 0.00 0.00 0.00 4.73
5290 5584 6.420903 TGATTTACTACTAGATGAACATGCGC 59.579 38.462 0.00 0.00 0.00 6.09
5291 5585 2.732366 ACTACTAGATGAACATGCGCG 58.268 47.619 0.00 0.00 0.00 6.86
5292 5586 1.453524 CTACTAGATGAACATGCGCGC 59.546 52.381 27.26 27.26 0.00 6.86
5293 5587 0.179100 ACTAGATGAACATGCGCGCT 60.179 50.000 33.29 12.33 0.00 5.92
5294 5588 0.933097 CTAGATGAACATGCGCGCTT 59.067 50.000 33.29 24.21 0.00 4.68
5295 5589 0.930310 TAGATGAACATGCGCGCTTC 59.070 50.000 33.29 26.23 0.00 3.86
5296 5590 1.649348 GATGAACATGCGCGCTTCG 60.649 57.895 33.29 21.76 42.12 3.79
5321 5615 4.128388 GGGCGCCGGGAATTGTTG 62.128 66.667 22.54 0.00 0.00 3.33
5322 5616 3.370231 GGCGCCGGGAATTGTTGT 61.370 61.111 12.58 0.00 0.00 3.32
5323 5617 2.126502 GCGCCGGGAATTGTTGTG 60.127 61.111 2.18 0.00 0.00 3.33
5324 5618 2.622011 GCGCCGGGAATTGTTGTGA 61.622 57.895 2.18 0.00 0.00 3.58
5325 5619 1.933115 GCGCCGGGAATTGTTGTGAT 61.933 55.000 2.18 0.00 0.00 3.06
5326 5620 0.179166 CGCCGGGAATTGTTGTGATG 60.179 55.000 2.18 0.00 0.00 3.07
5327 5621 1.173043 GCCGGGAATTGTTGTGATGA 58.827 50.000 2.18 0.00 0.00 2.92
5328 5622 1.750778 GCCGGGAATTGTTGTGATGAT 59.249 47.619 2.18 0.00 0.00 2.45
5329 5623 2.223572 GCCGGGAATTGTTGTGATGATC 60.224 50.000 2.18 0.00 0.00 2.92
5330 5624 2.358898 CCGGGAATTGTTGTGATGATCC 59.641 50.000 0.00 0.00 0.00 3.36
5331 5625 3.016031 CGGGAATTGTTGTGATGATCCA 58.984 45.455 0.00 0.00 0.00 3.41
5332 5626 3.633525 CGGGAATTGTTGTGATGATCCAT 59.366 43.478 0.00 0.00 0.00 3.41
5333 5627 4.261322 CGGGAATTGTTGTGATGATCCATC 60.261 45.833 0.00 0.00 40.88 3.51
5334 5628 4.646040 GGGAATTGTTGTGATGATCCATCA 59.354 41.667 5.61 5.61 46.84 3.07
5345 5639 6.505048 TGATGATCCATCAGTTATGTCCTT 57.495 37.500 5.61 0.00 44.60 3.36
5346 5640 6.528321 TGATGATCCATCAGTTATGTCCTTC 58.472 40.000 5.61 0.00 44.60 3.46
5347 5641 5.955961 TGATCCATCAGTTATGTCCTTCA 57.044 39.130 0.00 0.00 33.34 3.02
5348 5642 5.674525 TGATCCATCAGTTATGTCCTTCAC 58.325 41.667 0.00 0.00 33.34 3.18
5349 5643 5.426509 TGATCCATCAGTTATGTCCTTCACT 59.573 40.000 0.00 0.00 33.34 3.41
5350 5644 5.089970 TCCATCAGTTATGTCCTTCACTG 57.910 43.478 0.00 0.00 33.34 3.66
5351 5645 4.532126 TCCATCAGTTATGTCCTTCACTGT 59.468 41.667 0.00 0.00 33.34 3.55
5352 5646 5.013079 TCCATCAGTTATGTCCTTCACTGTT 59.987 40.000 0.00 0.00 33.34 3.16
5353 5647 5.707298 CCATCAGTTATGTCCTTCACTGTTT 59.293 40.000 0.00 0.00 33.34 2.83
5354 5648 6.207417 CCATCAGTTATGTCCTTCACTGTTTT 59.793 38.462 0.00 0.00 33.34 2.43
5355 5649 6.618287 TCAGTTATGTCCTTCACTGTTTTG 57.382 37.500 0.00 0.00 0.00 2.44
5356 5650 6.353323 TCAGTTATGTCCTTCACTGTTTTGA 58.647 36.000 0.00 0.00 0.00 2.69
5357 5651 6.998074 TCAGTTATGTCCTTCACTGTTTTGAT 59.002 34.615 0.00 0.00 0.00 2.57
5358 5652 7.041167 TCAGTTATGTCCTTCACTGTTTTGATG 60.041 37.037 0.00 0.00 0.00 3.07
5359 5653 6.772716 AGTTATGTCCTTCACTGTTTTGATGT 59.227 34.615 0.00 0.00 0.00 3.06
5360 5654 5.695851 ATGTCCTTCACTGTTTTGATGTC 57.304 39.130 0.00 0.00 0.00 3.06
5361 5655 3.559655 TGTCCTTCACTGTTTTGATGTCG 59.440 43.478 0.00 0.00 0.00 4.35
5362 5656 3.058914 GTCCTTCACTGTTTTGATGTCGG 60.059 47.826 0.00 0.00 0.00 4.79
5363 5657 2.350772 CCTTCACTGTTTTGATGTCGGC 60.351 50.000 0.00 0.00 0.00 5.54
5364 5658 2.254546 TCACTGTTTTGATGTCGGCT 57.745 45.000 0.00 0.00 0.00 5.52
5365 5659 2.143122 TCACTGTTTTGATGTCGGCTC 58.857 47.619 0.00 0.00 0.00 4.70
5366 5660 2.146342 CACTGTTTTGATGTCGGCTCT 58.854 47.619 0.00 0.00 0.00 4.09
5367 5661 3.006430 TCACTGTTTTGATGTCGGCTCTA 59.994 43.478 0.00 0.00 0.00 2.43
5368 5662 3.369147 CACTGTTTTGATGTCGGCTCTAG 59.631 47.826 0.00 0.00 0.00 2.43
5369 5663 2.346803 TGTTTTGATGTCGGCTCTAGC 58.653 47.619 0.00 0.00 41.14 3.42
5370 5664 1.324736 GTTTTGATGTCGGCTCTAGCG 59.675 52.381 0.00 0.00 43.26 4.26
5371 5665 0.815095 TTTGATGTCGGCTCTAGCGA 59.185 50.000 0.00 0.00 43.26 4.93
5372 5666 1.032794 TTGATGTCGGCTCTAGCGAT 58.967 50.000 0.00 0.00 43.26 4.58
5373 5667 0.593618 TGATGTCGGCTCTAGCGATC 59.406 55.000 0.00 0.00 43.26 3.69
5374 5668 0.593618 GATGTCGGCTCTAGCGATCA 59.406 55.000 0.00 0.00 43.26 2.92
5375 5669 1.001268 GATGTCGGCTCTAGCGATCAA 60.001 52.381 0.00 0.00 43.26 2.57
5376 5670 0.815095 TGTCGGCTCTAGCGATCAAA 59.185 50.000 0.00 0.00 43.26 2.69
5377 5671 1.409064 TGTCGGCTCTAGCGATCAAAT 59.591 47.619 0.00 0.00 43.26 2.32
5378 5672 1.789464 GTCGGCTCTAGCGATCAAATG 59.211 52.381 0.00 0.00 43.26 2.32
5379 5673 1.681264 TCGGCTCTAGCGATCAAATGA 59.319 47.619 0.00 0.00 43.26 2.57
5380 5674 2.100749 TCGGCTCTAGCGATCAAATGAA 59.899 45.455 0.00 0.00 43.26 2.57
5381 5675 2.219674 CGGCTCTAGCGATCAAATGAAC 59.780 50.000 0.00 0.00 43.26 3.18
5382 5676 3.198068 GGCTCTAGCGATCAAATGAACA 58.802 45.455 0.00 0.00 43.26 3.18
5383 5677 3.623060 GGCTCTAGCGATCAAATGAACAA 59.377 43.478 0.00 0.00 43.26 2.83
5384 5678 4.094887 GGCTCTAGCGATCAAATGAACAAA 59.905 41.667 0.00 0.00 43.26 2.83
5385 5679 5.220931 GGCTCTAGCGATCAAATGAACAAAT 60.221 40.000 0.00 0.00 43.26 2.32
5386 5680 5.680229 GCTCTAGCGATCAAATGAACAAATG 59.320 40.000 0.00 0.00 0.00 2.32
5387 5681 6.676456 GCTCTAGCGATCAAATGAACAAATGT 60.676 38.462 0.00 0.00 0.00 2.71
5388 5682 6.775088 TCTAGCGATCAAATGAACAAATGTC 58.225 36.000 0.00 0.00 0.00 3.06
5389 5683 5.375417 AGCGATCAAATGAACAAATGTCA 57.625 34.783 0.00 0.00 0.00 3.58
5390 5684 5.957798 AGCGATCAAATGAACAAATGTCAT 58.042 33.333 0.00 0.00 0.00 3.06
5391 5685 6.032094 AGCGATCAAATGAACAAATGTCATC 58.968 36.000 0.00 0.00 0.00 2.92
5392 5686 5.230726 GCGATCAAATGAACAAATGTCATCC 59.769 40.000 0.00 0.00 0.00 3.51
5393 5687 5.745294 CGATCAAATGAACAAATGTCATCCC 59.255 40.000 0.00 0.00 0.00 3.85
5394 5688 6.405065 CGATCAAATGAACAAATGTCATCCCT 60.405 38.462 0.00 0.00 0.00 4.20
5395 5689 6.271488 TCAAATGAACAAATGTCATCCCTC 57.729 37.500 0.00 0.00 0.00 4.30
5396 5690 6.012113 TCAAATGAACAAATGTCATCCCTCT 58.988 36.000 0.00 0.00 0.00 3.69
5397 5691 7.174413 TCAAATGAACAAATGTCATCCCTCTA 58.826 34.615 0.00 0.00 0.00 2.43
5398 5692 7.835682 TCAAATGAACAAATGTCATCCCTCTAT 59.164 33.333 0.00 0.00 0.00 1.98
5399 5693 9.123902 CAAATGAACAAATGTCATCCCTCTATA 57.876 33.333 0.00 0.00 0.00 1.31
5400 5694 9.872684 AAATGAACAAATGTCATCCCTCTATAT 57.127 29.630 0.00 0.00 0.00 0.86
5406 5700 9.552695 ACAAATGTCATCCCTCTATATATCAGA 57.447 33.333 0.00 0.00 0.00 3.27
5409 5703 7.962995 TGTCATCCCTCTATATATCAGAACC 57.037 40.000 0.00 0.00 0.00 3.62
5410 5704 7.478721 TGTCATCCCTCTATATATCAGAACCA 58.521 38.462 0.00 0.00 0.00 3.67
5411 5705 7.617329 TGTCATCCCTCTATATATCAGAACCAG 59.383 40.741 0.00 0.00 0.00 4.00
5412 5706 7.617723 GTCATCCCTCTATATATCAGAACCAGT 59.382 40.741 0.00 0.00 0.00 4.00
5413 5707 8.846804 TCATCCCTCTATATATCAGAACCAGTA 58.153 37.037 0.00 0.00 0.00 2.74
5414 5708 9.130661 CATCCCTCTATATATCAGAACCAGTAG 57.869 40.741 0.00 0.00 0.00 2.57
5415 5709 8.233349 TCCCTCTATATATCAGAACCAGTAGT 57.767 38.462 0.00 0.00 0.00 2.73
5416 5710 9.347777 TCCCTCTATATATCAGAACCAGTAGTA 57.652 37.037 0.00 0.00 0.00 1.82
5417 5711 9.976776 CCCTCTATATATCAGAACCAGTAGTAA 57.023 37.037 0.00 0.00 0.00 2.24
5423 5717 7.870509 ATATCAGAACCAGTAGTAACGTACA 57.129 36.000 0.00 0.00 0.00 2.90
5424 5718 5.362556 TCAGAACCAGTAGTAACGTACAC 57.637 43.478 0.00 0.00 0.00 2.90
5425 5719 5.065914 TCAGAACCAGTAGTAACGTACACT 58.934 41.667 7.76 7.76 0.00 3.55
5426 5720 5.180117 TCAGAACCAGTAGTAACGTACACTC 59.820 44.000 6.04 0.41 0.00 3.51
5427 5721 5.180868 CAGAACCAGTAGTAACGTACACTCT 59.819 44.000 6.04 2.38 0.00 3.24
5428 5722 5.767168 AGAACCAGTAGTAACGTACACTCTT 59.233 40.000 6.04 0.00 0.00 2.85
5429 5723 6.264067 AGAACCAGTAGTAACGTACACTCTTT 59.736 38.462 6.04 0.00 0.00 2.52
5430 5724 7.445402 AGAACCAGTAGTAACGTACACTCTTTA 59.555 37.037 6.04 0.00 0.00 1.85
5431 5725 7.510549 ACCAGTAGTAACGTACACTCTTTAA 57.489 36.000 6.04 0.00 0.00 1.52
5432 5726 7.363431 ACCAGTAGTAACGTACACTCTTTAAC 58.637 38.462 6.04 0.24 0.00 2.01
5433 5727 7.013274 ACCAGTAGTAACGTACACTCTTTAACA 59.987 37.037 6.04 0.00 0.00 2.41
5434 5728 7.862372 CCAGTAGTAACGTACACTCTTTAACAA 59.138 37.037 6.04 0.00 0.00 2.83
5435 5729 9.403110 CAGTAGTAACGTACACTCTTTAACAAT 57.597 33.333 6.04 0.00 0.00 2.71
5436 5730 9.971922 AGTAGTAACGTACACTCTTTAACAATT 57.028 29.630 6.04 0.00 0.00 2.32
5437 5731 9.999883 GTAGTAACGTACACTCTTTAACAATTG 57.000 33.333 3.24 3.24 0.00 2.32
5438 5732 8.652810 AGTAACGTACACTCTTTAACAATTGT 57.347 30.769 4.92 4.92 0.00 2.71
5439 5733 9.101655 AGTAACGTACACTCTTTAACAATTGTT 57.898 29.630 25.99 25.99 41.73 2.83
5440 5734 9.706846 GTAACGTACACTCTTTAACAATTGTTT 57.293 29.630 27.66 12.78 39.31 2.83
5441 5735 8.609478 AACGTACACTCTTTAACAATTGTTTG 57.391 30.769 27.66 20.03 39.31 2.93
5474 5768 9.838339 TTAAAACTGAATAGAATCCTCCATCTC 57.162 33.333 0.00 0.00 0.00 2.75
5475 5769 7.688918 AAACTGAATAGAATCCTCCATCTCT 57.311 36.000 0.00 0.00 0.00 3.10
5476 5770 7.688918 AACTGAATAGAATCCTCCATCTCTT 57.311 36.000 0.00 0.00 0.00 2.85
5477 5771 7.688918 ACTGAATAGAATCCTCCATCTCTTT 57.311 36.000 0.00 0.00 0.00 2.52
5478 5772 7.734942 ACTGAATAGAATCCTCCATCTCTTTC 58.265 38.462 0.00 0.00 0.00 2.62
5479 5773 7.346698 ACTGAATAGAATCCTCCATCTCTTTCA 59.653 37.037 0.00 0.00 32.05 2.69
5480 5774 8.094284 TGAATAGAATCCTCCATCTCTTTCAA 57.906 34.615 0.00 0.00 30.94 2.69
5481 5775 7.989741 TGAATAGAATCCTCCATCTCTTTCAAC 59.010 37.037 0.00 0.00 30.94 3.18
5482 5776 7.688918 ATAGAATCCTCCATCTCTTTCAACT 57.311 36.000 0.00 0.00 0.00 3.16
5483 5777 8.789767 ATAGAATCCTCCATCTCTTTCAACTA 57.210 34.615 0.00 0.00 0.00 2.24
5484 5778 7.502060 AGAATCCTCCATCTCTTTCAACTAA 57.498 36.000 0.00 0.00 0.00 2.24
5485 5779 7.334858 AGAATCCTCCATCTCTTTCAACTAAC 58.665 38.462 0.00 0.00 0.00 2.34
5486 5780 5.422214 TCCTCCATCTCTTTCAACTAACC 57.578 43.478 0.00 0.00 0.00 2.85
5487 5781 5.094387 TCCTCCATCTCTTTCAACTAACCT 58.906 41.667 0.00 0.00 0.00 3.50
5488 5782 5.548056 TCCTCCATCTCTTTCAACTAACCTT 59.452 40.000 0.00 0.00 0.00 3.50
5489 5783 6.729100 TCCTCCATCTCTTTCAACTAACCTTA 59.271 38.462 0.00 0.00 0.00 2.69
5490 5784 7.403231 TCCTCCATCTCTTTCAACTAACCTTAT 59.597 37.037 0.00 0.00 0.00 1.73
5491 5785 7.497249 CCTCCATCTCTTTCAACTAACCTTATG 59.503 40.741 0.00 0.00 0.00 1.90
5492 5786 7.338710 TCCATCTCTTTCAACTAACCTTATGG 58.661 38.462 0.00 0.00 39.83 2.74
5493 5787 7.182026 TCCATCTCTTTCAACTAACCTTATGGA 59.818 37.037 0.81 0.00 36.53 3.41
5494 5788 7.281100 CCATCTCTTTCAACTAACCTTATGGAC 59.719 40.741 0.81 0.00 37.04 4.02
5495 5789 7.311092 TCTCTTTCAACTAACCTTATGGACA 57.689 36.000 0.81 0.00 37.04 4.02
5496 5790 7.918076 TCTCTTTCAACTAACCTTATGGACAT 58.082 34.615 0.81 0.00 37.04 3.06
5497 5791 8.383175 TCTCTTTCAACTAACCTTATGGACATT 58.617 33.333 0.81 0.00 37.04 2.71
5498 5792 9.667107 CTCTTTCAACTAACCTTATGGACATTA 57.333 33.333 0.81 0.00 37.04 1.90
5503 5797 9.442062 TCAACTAACCTTATGGACATTATAGGA 57.558 33.333 0.81 0.00 37.04 2.94
5506 5800 9.448587 ACTAACCTTATGGACATTATAGGAAGT 57.551 33.333 0.81 11.27 37.04 3.01
5507 5801 9.712305 CTAACCTTATGGACATTATAGGAAGTG 57.288 37.037 0.81 0.00 37.04 3.16
5508 5802 7.931015 ACCTTATGGACATTATAGGAAGTGA 57.069 36.000 0.81 0.00 37.04 3.41
5509 5803 8.331931 ACCTTATGGACATTATAGGAAGTGAA 57.668 34.615 0.81 0.00 37.04 3.18
5510 5804 8.778059 ACCTTATGGACATTATAGGAAGTGAAA 58.222 33.333 0.81 0.00 37.04 2.69
5511 5805 9.057089 CCTTATGGACATTATAGGAAGTGAAAC 57.943 37.037 0.00 0.00 34.57 2.78
5512 5806 8.974060 TTATGGACATTATAGGAAGTGAAACC 57.026 34.615 0.00 0.00 37.80 3.27
5513 5807 6.381498 TGGACATTATAGGAAGTGAAACCA 57.619 37.500 0.00 0.00 37.80 3.67
5514 5808 6.785076 TGGACATTATAGGAAGTGAAACCAA 58.215 36.000 0.00 0.00 37.80 3.67
5515 5809 7.235079 TGGACATTATAGGAAGTGAAACCAAA 58.765 34.615 0.00 0.00 37.80 3.28
5516 5810 7.726291 TGGACATTATAGGAAGTGAAACCAAAA 59.274 33.333 0.00 0.00 37.80 2.44
5517 5811 8.244113 GGACATTATAGGAAGTGAAACCAAAAG 58.756 37.037 0.00 0.00 37.80 2.27
5518 5812 8.122472 ACATTATAGGAAGTGAAACCAAAAGG 57.878 34.615 0.00 0.00 37.80 3.11
5519 5813 7.947890 ACATTATAGGAAGTGAAACCAAAAGGA 59.052 33.333 0.00 0.00 37.80 3.36
5520 5814 7.754851 TTATAGGAAGTGAAACCAAAAGGAC 57.245 36.000 0.00 0.00 37.80 3.85
5521 5815 3.976015 AGGAAGTGAAACCAAAAGGACA 58.024 40.909 0.00 0.00 37.80 4.02
5522 5816 4.349365 AGGAAGTGAAACCAAAAGGACAA 58.651 39.130 0.00 0.00 37.80 3.18
5523 5817 4.159693 AGGAAGTGAAACCAAAAGGACAAC 59.840 41.667 0.00 0.00 37.80 3.32
5524 5818 4.081917 GGAAGTGAAACCAAAAGGACAACA 60.082 41.667 0.00 0.00 37.80 3.33
5525 5819 5.395214 GGAAGTGAAACCAAAAGGACAACAT 60.395 40.000 0.00 0.00 37.80 2.71
5526 5820 5.009854 AGTGAAACCAAAAGGACAACATG 57.990 39.130 0.00 0.00 37.80 3.21
5527 5821 4.119136 GTGAAACCAAAAGGACAACATGG 58.881 43.478 0.00 0.00 37.19 3.66
5528 5822 3.772025 TGAAACCAAAAGGACAACATGGT 59.228 39.130 0.00 0.00 45.97 3.55
5529 5823 4.142049 TGAAACCAAAAGGACAACATGGTC 60.142 41.667 0.00 0.00 43.34 4.02
5530 5824 3.025322 ACCAAAAGGACAACATGGTCA 57.975 42.857 0.00 0.00 40.23 4.02
5531 5825 3.575805 ACCAAAAGGACAACATGGTCAT 58.424 40.909 0.00 0.00 40.23 3.06
5532 5826 4.735369 ACCAAAAGGACAACATGGTCATA 58.265 39.130 0.00 0.00 40.23 2.15
5533 5827 5.144100 ACCAAAAGGACAACATGGTCATAA 58.856 37.500 0.00 0.00 40.23 1.90
5534 5828 5.600484 ACCAAAAGGACAACATGGTCATAAA 59.400 36.000 0.00 0.00 40.23 1.40
5535 5829 6.158598 CCAAAAGGACAACATGGTCATAAAG 58.841 40.000 0.00 0.00 39.59 1.85
5536 5830 6.015519 CCAAAAGGACAACATGGTCATAAAGA 60.016 38.462 0.00 0.00 39.59 2.52
5537 5831 6.824305 AAAGGACAACATGGTCATAAAGAG 57.176 37.500 0.00 0.00 39.59 2.85
5538 5832 5.762179 AGGACAACATGGTCATAAAGAGA 57.238 39.130 0.00 0.00 39.59 3.10
5539 5833 6.319048 AGGACAACATGGTCATAAAGAGAT 57.681 37.500 0.00 0.00 39.59 2.75
5540 5834 7.437713 AGGACAACATGGTCATAAAGAGATA 57.562 36.000 0.00 0.00 39.59 1.98
5541 5835 7.275920 AGGACAACATGGTCATAAAGAGATAC 58.724 38.462 0.00 0.00 39.59 2.24
5542 5836 6.201044 GGACAACATGGTCATAAAGAGATACG 59.799 42.308 0.00 0.00 39.59 3.06
5543 5837 6.049149 ACAACATGGTCATAAAGAGATACGG 58.951 40.000 0.00 0.00 0.00 4.02
5544 5838 5.871396 ACATGGTCATAAAGAGATACGGT 57.129 39.130 0.00 0.00 0.00 4.83
5545 5839 5.601662 ACATGGTCATAAAGAGATACGGTG 58.398 41.667 0.00 0.00 0.00 4.94
5546 5840 4.054780 TGGTCATAAAGAGATACGGTGC 57.945 45.455 0.00 0.00 0.00 5.01
5547 5841 3.449377 TGGTCATAAAGAGATACGGTGCA 59.551 43.478 0.00 0.00 0.00 4.57
5548 5842 4.081365 TGGTCATAAAGAGATACGGTGCAA 60.081 41.667 0.00 0.00 0.00 4.08
5549 5843 5.057149 GGTCATAAAGAGATACGGTGCAAT 58.943 41.667 0.00 0.00 0.00 3.56
5550 5844 5.177696 GGTCATAAAGAGATACGGTGCAATC 59.822 44.000 0.00 0.00 0.00 2.67
5551 5845 4.982295 TCATAAAGAGATACGGTGCAATCG 59.018 41.667 8.86 8.86 0.00 3.34
5552 5846 3.520290 AAAGAGATACGGTGCAATCGA 57.480 42.857 16.11 0.00 0.00 3.59
5553 5847 3.735237 AAGAGATACGGTGCAATCGAT 57.265 42.857 16.11 0.00 0.00 3.59
5554 5848 3.735237 AGAGATACGGTGCAATCGATT 57.265 42.857 16.11 4.39 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 7.687005 TGTTTGAATTTGTCCGTACATTTTC 57.313 32.000 0.00 0.00 34.97 2.29
321 324 7.120726 ACAACCCAAGTATATTCTGTTAAGTGC 59.879 37.037 0.00 0.00 0.00 4.40
916 1072 1.000359 AAGATTTTGGGGCGGAGGG 60.000 57.895 0.00 0.00 0.00 4.30
997 1155 1.363807 CATGGAGCGGCGTCATCTA 59.636 57.895 9.37 2.95 0.00 1.98
1172 1330 6.294397 CCTTCTCTCCTGTGAAAAGGAAAATG 60.294 42.308 0.00 0.00 45.81 2.32
1294 1459 1.287425 GACGGAGCGGGAAACAATAG 58.713 55.000 0.00 0.00 0.00 1.73
1298 1463 3.608662 ACGACGGAGCGGGAAACA 61.609 61.111 0.00 0.00 35.12 2.83
1300 1465 3.562779 GACACGACGGAGCGGGAAA 62.563 63.158 0.00 0.00 38.25 3.13
1301 1466 4.047059 GACACGACGGAGCGGGAA 62.047 66.667 0.00 0.00 38.25 3.97
1314 1479 2.946762 GCTGAAGTTGCGGGACAC 59.053 61.111 0.00 0.00 0.00 3.67
1393 1572 7.061673 ACACTTTGTACGCGTCGTTATTAATTA 59.938 33.333 18.63 0.00 41.54 1.40
1394 1573 6.128849 ACACTTTGTACGCGTCGTTATTAATT 60.129 34.615 18.63 0.00 41.54 1.40
1395 1574 5.345741 ACACTTTGTACGCGTCGTTATTAAT 59.654 36.000 18.63 0.00 41.54 1.40
1396 1575 4.679197 ACACTTTGTACGCGTCGTTATTAA 59.321 37.500 18.63 0.00 41.54 1.40
1397 1576 4.225984 ACACTTTGTACGCGTCGTTATTA 58.774 39.130 18.63 0.00 41.54 0.98
1398 1577 3.052036 ACACTTTGTACGCGTCGTTATT 58.948 40.909 18.63 0.00 41.54 1.40
1399 1578 2.658325 GACACTTTGTACGCGTCGTTAT 59.342 45.455 18.63 0.00 41.54 1.89
1490 1692 5.595952 AGAAAGAAAGATTACCATCCATGCC 59.404 40.000 0.00 0.00 0.00 4.40
1708 1954 0.779997 AGCCAATCCTTTCCACCAGT 59.220 50.000 0.00 0.00 0.00 4.00
1945 2191 8.077991 TGAAAAGAACTAGCACTGAATCAAATG 58.922 33.333 0.00 0.00 0.00 2.32
1956 2202 5.971792 GGTGAAAACTGAAAAGAACTAGCAC 59.028 40.000 0.00 0.00 0.00 4.40
1985 2235 6.096141 AGAGGACACAGTCATACTATGAACTG 59.904 42.308 17.96 17.96 41.69 3.16
1998 2248 2.417239 CTCGACACTAGAGGACACAGTC 59.583 54.545 0.00 0.00 32.38 3.51
2079 2329 3.603770 GCGTGTGTGATGCAAGAAATAAC 59.396 43.478 0.00 0.00 36.49 1.89
2177 2427 5.873164 ACTCTGGTATCATTTTGGTACGTTC 59.127 40.000 0.00 0.00 34.86 3.95
2326 2584 7.877612 TGAACTTGTGCTACTCTTGATTTATCA 59.122 33.333 0.00 0.00 34.44 2.15
2768 3027 7.710896 TGTATCCATCGATCATCACTGATATC 58.289 38.462 0.00 0.00 42.27 1.63
2925 3186 4.612943 GGCATTTCCACGAAACTGTAAAA 58.387 39.130 0.00 0.00 34.23 1.52
3109 3370 2.761786 ATTGGATGCAGCACCCTTAT 57.238 45.000 7.53 0.00 0.00 1.73
3346 3608 1.599047 CCATGTCGAAGGGTCAGCT 59.401 57.895 0.00 0.00 0.00 4.24
3772 4034 4.552166 ATTGTTCTGTTGTGCACACTAC 57.448 40.909 21.56 16.95 37.52 2.73
3773 4035 6.685527 TTTATTGTTCTGTTGTGCACACTA 57.314 33.333 21.56 10.61 0.00 2.74
3947 4212 2.409975 TCGAAAGAAAAGTAGGGCACG 58.590 47.619 0.00 0.00 37.03 5.34
3981 4246 2.697229 CACTAGATGCAGAGACCATGGA 59.303 50.000 21.47 0.00 0.00 3.41
4014 4279 1.835494 TGACAACCGGTTCCAACAAA 58.165 45.000 19.24 0.00 0.00 2.83
4022 4287 1.675552 CTGTTCCTTGACAACCGGTT 58.324 50.000 15.86 15.86 0.00 4.44
4294 4559 4.323417 TCGATGCTTGATGTAAGTGGTTT 58.677 39.130 0.00 0.00 38.70 3.27
4304 4569 1.329906 GGACAGCTTCGATGCTTGATG 59.670 52.381 22.03 14.42 41.98 3.07
4319 4584 1.728971 GAAACACGATGCAGAGGACAG 59.271 52.381 0.00 0.00 0.00 3.51
4375 4640 1.645034 ATTTCATGACTCCGCTGTCG 58.355 50.000 0.00 0.00 39.64 4.35
4379 4644 1.474077 GCCAAATTTCATGACTCCGCT 59.526 47.619 0.00 0.00 0.00 5.52
4452 4717 7.148407 CCTTCTTTATATAGCGTGGGCAAATAG 60.148 40.741 0.00 0.00 43.41 1.73
4542 4807 3.056250 CACTCAGCACTCAACTACCAGAT 60.056 47.826 0.00 0.00 0.00 2.90
4592 4857 1.546029 GAAATCCCAAGCTCAACCACC 59.454 52.381 0.00 0.00 0.00 4.61
4826 5102 5.280164 CCAATGCGTATACAATGAAATGCA 58.720 37.500 3.32 2.12 38.17 3.96
4848 5124 1.549203 AAATGTGTGCCTCATCACCC 58.451 50.000 0.00 0.00 36.17 4.61
5012 5294 9.769093 CTCAAAATCGTCCGTATTAATCTTTTT 57.231 29.630 0.00 0.00 0.00 1.94
5019 5301 5.446741 GCTTGCTCAAAATCGTCCGTATTAA 60.447 40.000 0.00 0.00 0.00 1.40
5024 5306 0.517316 GCTTGCTCAAAATCGTCCGT 59.483 50.000 0.00 0.00 0.00 4.69
5025 5307 0.179189 GGCTTGCTCAAAATCGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
5027 5309 1.168714 AGGGCTTGCTCAAAATCGTC 58.831 50.000 0.00 0.00 0.00 4.20
5028 5310 1.270550 CAAGGGCTTGCTCAAAATCGT 59.729 47.619 0.00 0.00 33.45 3.73
5029 5311 1.541147 TCAAGGGCTTGCTCAAAATCG 59.459 47.619 0.00 0.00 40.24 3.34
5030 5312 3.881937 ATCAAGGGCTTGCTCAAAATC 57.118 42.857 0.00 0.00 40.24 2.17
5031 5313 4.774200 ACTAATCAAGGGCTTGCTCAAAAT 59.226 37.500 0.00 0.00 40.24 1.82
5033 5315 3.507233 CACTAATCAAGGGCTTGCTCAAA 59.493 43.478 0.00 0.00 40.24 2.69
5034 5316 3.084039 CACTAATCAAGGGCTTGCTCAA 58.916 45.455 0.00 0.00 40.24 3.02
5035 5317 2.040278 ACACTAATCAAGGGCTTGCTCA 59.960 45.455 0.00 0.00 40.24 4.26
5036 5318 2.680339 GACACTAATCAAGGGCTTGCTC 59.320 50.000 0.00 0.00 40.24 4.26
5037 5319 2.040278 TGACACTAATCAAGGGCTTGCT 59.960 45.455 0.00 0.00 40.24 3.91
5081 5363 6.071896 TCCATGATTGCCAAACGTATTTTACA 60.072 34.615 0.00 0.00 0.00 2.41
5085 5367 4.462483 AGTCCATGATTGCCAAACGTATTT 59.538 37.500 0.00 0.00 0.00 1.40
5090 5372 5.947228 ATATAGTCCATGATTGCCAAACG 57.053 39.130 0.00 0.00 0.00 3.60
5117 5399 5.591472 CAGAGGCATTCAGAATGGAATACAA 59.409 40.000 22.25 0.00 39.31 2.41
5165 5459 3.884091 AGACTACGACGGATTATGCTCTT 59.116 43.478 0.00 0.00 0.00 2.85
5172 5466 3.118261 ACCACCTAGACTACGACGGATTA 60.118 47.826 0.00 0.00 0.00 1.75
5263 5557 8.982685 CGCATGTTCATCTAGTAGTAAATCAAT 58.017 33.333 0.00 0.00 0.00 2.57
5264 5558 7.042725 GCGCATGTTCATCTAGTAGTAAATCAA 60.043 37.037 0.30 0.00 0.00 2.57
5265 5559 6.420903 GCGCATGTTCATCTAGTAGTAAATCA 59.579 38.462 0.30 0.00 0.00 2.57
5266 5560 6.399039 CGCGCATGTTCATCTAGTAGTAAATC 60.399 42.308 8.75 0.00 0.00 2.17
5267 5561 5.402568 CGCGCATGTTCATCTAGTAGTAAAT 59.597 40.000 8.75 0.00 0.00 1.40
5268 5562 4.738252 CGCGCATGTTCATCTAGTAGTAAA 59.262 41.667 8.75 0.00 0.00 2.01
5269 5563 4.287720 CGCGCATGTTCATCTAGTAGTAA 58.712 43.478 8.75 0.00 0.00 2.24
5270 5564 3.852205 GCGCGCATGTTCATCTAGTAGTA 60.852 47.826 29.10 0.00 0.00 1.82
5271 5565 2.732366 CGCGCATGTTCATCTAGTAGT 58.268 47.619 8.75 0.00 0.00 2.73
5272 5566 1.453524 GCGCGCATGTTCATCTAGTAG 59.546 52.381 29.10 0.00 0.00 2.57
5273 5567 1.067060 AGCGCGCATGTTCATCTAGTA 59.933 47.619 35.10 0.00 0.00 1.82
5274 5568 0.179100 AGCGCGCATGTTCATCTAGT 60.179 50.000 35.10 3.94 0.00 2.57
5275 5569 0.933097 AAGCGCGCATGTTCATCTAG 59.067 50.000 35.10 0.00 0.00 2.43
5276 5570 0.930310 GAAGCGCGCATGTTCATCTA 59.070 50.000 35.10 0.00 0.00 1.98
5277 5571 1.717937 GAAGCGCGCATGTTCATCT 59.282 52.632 35.10 5.73 0.00 2.90
5278 5572 1.649348 CGAAGCGCGCATGTTCATC 60.649 57.895 35.10 16.84 0.00 2.92
5279 5573 2.400798 CGAAGCGCGCATGTTCAT 59.599 55.556 35.10 7.55 0.00 2.57
5304 5598 4.128388 CAACAATTCCCGGCGCCC 62.128 66.667 23.46 2.84 0.00 6.13
5305 5599 3.370231 ACAACAATTCCCGGCGCC 61.370 61.111 19.07 19.07 0.00 6.53
5306 5600 1.933115 ATCACAACAATTCCCGGCGC 61.933 55.000 0.00 0.00 0.00 6.53
5307 5601 0.179166 CATCACAACAATTCCCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
5308 5602 1.173043 TCATCACAACAATTCCCGGC 58.827 50.000 0.00 0.00 0.00 6.13
5309 5603 2.358898 GGATCATCACAACAATTCCCGG 59.641 50.000 0.00 0.00 0.00 5.73
5310 5604 3.016031 TGGATCATCACAACAATTCCCG 58.984 45.455 0.00 0.00 0.00 5.14
5311 5605 4.646040 TGATGGATCATCACAACAATTCCC 59.354 41.667 6.50 0.00 44.60 3.97
5312 5606 5.359009 ACTGATGGATCATCACAACAATTCC 59.641 40.000 6.50 0.00 44.60 3.01
5313 5607 6.446781 ACTGATGGATCATCACAACAATTC 57.553 37.500 6.50 0.00 44.60 2.17
5314 5608 6.845758 AACTGATGGATCATCACAACAATT 57.154 33.333 6.50 0.00 44.60 2.32
5315 5609 7.558807 ACATAACTGATGGATCATCACAACAAT 59.441 33.333 6.50 0.00 44.60 2.71
5316 5610 6.885918 ACATAACTGATGGATCATCACAACAA 59.114 34.615 6.50 0.00 44.60 2.83
5317 5611 6.417258 ACATAACTGATGGATCATCACAACA 58.583 36.000 6.50 0.00 44.60 3.33
5318 5612 6.017605 GGACATAACTGATGGATCATCACAAC 60.018 42.308 6.50 0.00 44.60 3.32
5319 5613 6.057533 GGACATAACTGATGGATCATCACAA 58.942 40.000 6.50 0.00 44.60 3.33
5320 5614 5.367644 AGGACATAACTGATGGATCATCACA 59.632 40.000 6.50 0.00 44.60 3.58
5321 5615 5.862845 AGGACATAACTGATGGATCATCAC 58.137 41.667 6.50 0.00 44.60 3.06
5322 5616 6.100134 TGAAGGACATAACTGATGGATCATCA 59.900 38.462 9.80 9.80 46.84 3.07
5323 5617 6.426328 GTGAAGGACATAACTGATGGATCATC 59.574 42.308 0.00 1.28 40.18 2.92
5324 5618 6.100859 AGTGAAGGACATAACTGATGGATCAT 59.899 38.462 0.00 0.00 40.18 2.45
5325 5619 5.426509 AGTGAAGGACATAACTGATGGATCA 59.573 40.000 0.00 0.00 40.18 2.92
5326 5620 5.757320 CAGTGAAGGACATAACTGATGGATC 59.243 44.000 0.00 0.00 42.09 3.36
5327 5621 5.190528 ACAGTGAAGGACATAACTGATGGAT 59.809 40.000 8.54 0.00 42.09 3.41
5328 5622 4.532126 ACAGTGAAGGACATAACTGATGGA 59.468 41.667 8.54 0.00 42.09 3.41
5329 5623 4.836825 ACAGTGAAGGACATAACTGATGG 58.163 43.478 8.54 0.00 42.09 3.51
5330 5624 6.808008 AAACAGTGAAGGACATAACTGATG 57.192 37.500 8.54 0.00 42.09 3.07
5331 5625 6.998074 TCAAAACAGTGAAGGACATAACTGAT 59.002 34.615 8.54 0.00 42.09 2.90
5332 5626 6.353323 TCAAAACAGTGAAGGACATAACTGA 58.647 36.000 8.54 0.00 42.09 3.41
5333 5627 6.618287 TCAAAACAGTGAAGGACATAACTG 57.382 37.500 0.00 0.00 44.46 3.16
5334 5628 6.772716 ACATCAAAACAGTGAAGGACATAACT 59.227 34.615 0.00 0.00 0.00 2.24
5335 5629 6.970484 ACATCAAAACAGTGAAGGACATAAC 58.030 36.000 0.00 0.00 0.00 1.89
5336 5630 6.073276 CGACATCAAAACAGTGAAGGACATAA 60.073 38.462 0.00 0.00 0.00 1.90
5337 5631 5.408299 CGACATCAAAACAGTGAAGGACATA 59.592 40.000 0.00 0.00 0.00 2.29
5338 5632 4.214119 CGACATCAAAACAGTGAAGGACAT 59.786 41.667 0.00 0.00 0.00 3.06
5339 5633 3.559655 CGACATCAAAACAGTGAAGGACA 59.440 43.478 0.00 0.00 0.00 4.02
5340 5634 3.058914 CCGACATCAAAACAGTGAAGGAC 60.059 47.826 0.00 0.00 0.00 3.85
5341 5635 3.138304 CCGACATCAAAACAGTGAAGGA 58.862 45.455 0.00 0.00 0.00 3.36
5342 5636 2.350772 GCCGACATCAAAACAGTGAAGG 60.351 50.000 0.00 0.00 0.00 3.46
5343 5637 2.549754 AGCCGACATCAAAACAGTGAAG 59.450 45.455 0.00 0.00 0.00 3.02
5344 5638 2.548057 GAGCCGACATCAAAACAGTGAA 59.452 45.455 0.00 0.00 0.00 3.18
5345 5639 2.143122 GAGCCGACATCAAAACAGTGA 58.857 47.619 0.00 0.00 0.00 3.41
5346 5640 2.146342 AGAGCCGACATCAAAACAGTG 58.854 47.619 0.00 0.00 0.00 3.66
5347 5641 2.550830 AGAGCCGACATCAAAACAGT 57.449 45.000 0.00 0.00 0.00 3.55
5348 5642 2.349886 GCTAGAGCCGACATCAAAACAG 59.650 50.000 0.00 0.00 34.31 3.16
5349 5643 2.346803 GCTAGAGCCGACATCAAAACA 58.653 47.619 0.00 0.00 34.31 2.83
5350 5644 1.324736 CGCTAGAGCCGACATCAAAAC 59.675 52.381 0.00 0.00 37.91 2.43
5351 5645 1.203758 TCGCTAGAGCCGACATCAAAA 59.796 47.619 0.00 0.00 37.91 2.44
5352 5646 0.815095 TCGCTAGAGCCGACATCAAA 59.185 50.000 0.00 0.00 37.91 2.69
5353 5647 1.001268 GATCGCTAGAGCCGACATCAA 60.001 52.381 0.00 0.00 37.91 2.57
5354 5648 0.593618 GATCGCTAGAGCCGACATCA 59.406 55.000 0.00 0.00 37.91 3.07
5355 5649 0.593618 TGATCGCTAGAGCCGACATC 59.406 55.000 0.00 0.00 37.91 3.06
5356 5650 1.032794 TTGATCGCTAGAGCCGACAT 58.967 50.000 0.00 0.00 37.91 3.06
5357 5651 0.815095 TTTGATCGCTAGAGCCGACA 59.185 50.000 0.00 0.00 37.91 4.35
5358 5652 1.789464 CATTTGATCGCTAGAGCCGAC 59.211 52.381 0.00 0.00 37.91 4.79
5359 5653 1.681264 TCATTTGATCGCTAGAGCCGA 59.319 47.619 0.00 0.00 37.91 5.54
5360 5654 2.140065 TCATTTGATCGCTAGAGCCG 57.860 50.000 0.00 0.00 37.91 5.52
5361 5655 3.198068 TGTTCATTTGATCGCTAGAGCC 58.802 45.455 0.00 0.00 37.91 4.70
5362 5656 4.864916 TTGTTCATTTGATCGCTAGAGC 57.135 40.909 0.00 0.00 37.78 4.09
5363 5657 6.779117 ACATTTGTTCATTTGATCGCTAGAG 58.221 36.000 0.00 0.00 0.00 2.43
5364 5658 6.371271 TGACATTTGTTCATTTGATCGCTAGA 59.629 34.615 0.00 0.00 0.00 2.43
5365 5659 6.545508 TGACATTTGTTCATTTGATCGCTAG 58.454 36.000 0.00 0.00 0.00 3.42
5366 5660 6.493449 TGACATTTGTTCATTTGATCGCTA 57.507 33.333 0.00 0.00 0.00 4.26
5367 5661 5.375417 TGACATTTGTTCATTTGATCGCT 57.625 34.783 0.00 0.00 0.00 4.93
5368 5662 5.230726 GGATGACATTTGTTCATTTGATCGC 59.769 40.000 0.00 0.00 0.00 4.58
5369 5663 5.745294 GGGATGACATTTGTTCATTTGATCG 59.255 40.000 0.00 0.00 0.00 3.69
5370 5664 6.870769 AGGGATGACATTTGTTCATTTGATC 58.129 36.000 0.00 0.00 0.00 2.92
5371 5665 6.666546 AGAGGGATGACATTTGTTCATTTGAT 59.333 34.615 0.00 0.00 0.00 2.57
5372 5666 6.012113 AGAGGGATGACATTTGTTCATTTGA 58.988 36.000 0.00 0.00 0.00 2.69
5373 5667 6.276832 AGAGGGATGACATTTGTTCATTTG 57.723 37.500 0.00 0.00 0.00 2.32
5374 5668 9.872684 ATATAGAGGGATGACATTTGTTCATTT 57.127 29.630 0.00 0.00 0.00 2.32
5380 5674 9.552695 TCTGATATATAGAGGGATGACATTTGT 57.447 33.333 0.00 0.00 0.00 2.83
5383 5677 8.986991 GGTTCTGATATATAGAGGGATGACATT 58.013 37.037 0.00 0.00 0.00 2.71
5384 5678 8.125081 TGGTTCTGATATATAGAGGGATGACAT 58.875 37.037 0.00 0.00 0.00 3.06
5385 5679 7.478721 TGGTTCTGATATATAGAGGGATGACA 58.521 38.462 0.00 0.00 0.00 3.58
5386 5680 7.617723 ACTGGTTCTGATATATAGAGGGATGAC 59.382 40.741 0.00 0.00 0.00 3.06
5387 5681 7.713518 ACTGGTTCTGATATATAGAGGGATGA 58.286 38.462 0.00 0.00 0.00 2.92
5388 5682 7.969690 ACTGGTTCTGATATATAGAGGGATG 57.030 40.000 0.00 0.00 0.00 3.51
5389 5683 8.851876 ACTACTGGTTCTGATATATAGAGGGAT 58.148 37.037 0.00 0.00 0.00 3.85
5390 5684 8.233349 ACTACTGGTTCTGATATATAGAGGGA 57.767 38.462 0.00 0.00 0.00 4.20
5391 5685 9.976776 TTACTACTGGTTCTGATATATAGAGGG 57.023 37.037 0.00 0.00 0.00 4.30
5397 5691 9.565090 TGTACGTTACTACTGGTTCTGATATAT 57.435 33.333 0.00 0.00 0.00 0.86
5398 5692 8.830580 GTGTACGTTACTACTGGTTCTGATATA 58.169 37.037 0.00 0.00 0.00 0.86
5399 5693 7.555554 AGTGTACGTTACTACTGGTTCTGATAT 59.444 37.037 0.00 0.00 0.00 1.63
5400 5694 6.881065 AGTGTACGTTACTACTGGTTCTGATA 59.119 38.462 0.00 0.00 0.00 2.15
5401 5695 5.709164 AGTGTACGTTACTACTGGTTCTGAT 59.291 40.000 0.00 0.00 0.00 2.90
5402 5696 5.065914 AGTGTACGTTACTACTGGTTCTGA 58.934 41.667 0.00 0.00 0.00 3.27
5403 5697 5.180868 AGAGTGTACGTTACTACTGGTTCTG 59.819 44.000 0.00 0.00 0.00 3.02
5404 5698 5.312079 AGAGTGTACGTTACTACTGGTTCT 58.688 41.667 0.00 0.00 0.00 3.01
5405 5699 5.619625 AGAGTGTACGTTACTACTGGTTC 57.380 43.478 0.00 0.00 0.00 3.62
5406 5700 6.396829 AAAGAGTGTACGTTACTACTGGTT 57.603 37.500 0.00 0.00 0.00 3.67
5407 5701 7.013274 TGTTAAAGAGTGTACGTTACTACTGGT 59.987 37.037 0.00 0.00 0.00 4.00
5408 5702 7.362662 TGTTAAAGAGTGTACGTTACTACTGG 58.637 38.462 0.00 0.00 0.00 4.00
5409 5703 8.786937 TTGTTAAAGAGTGTACGTTACTACTG 57.213 34.615 0.00 0.00 0.00 2.74
5410 5704 9.971922 AATTGTTAAAGAGTGTACGTTACTACT 57.028 29.630 0.00 0.00 0.00 2.57
5411 5705 9.999883 CAATTGTTAAAGAGTGTACGTTACTAC 57.000 33.333 0.00 0.00 0.00 2.73
5412 5706 9.748708 ACAATTGTTAAAGAGTGTACGTTACTA 57.251 29.630 4.92 0.00 0.00 1.82
5413 5707 8.652810 ACAATTGTTAAAGAGTGTACGTTACT 57.347 30.769 4.92 0.00 0.00 2.24
5414 5708 9.706846 AAACAATTGTTAAAGAGTGTACGTTAC 57.293 29.630 23.53 0.00 37.25 2.50
5415 5709 9.705471 CAAACAATTGTTAAAGAGTGTACGTTA 57.295 29.630 23.53 0.00 37.25 3.18
5416 5710 8.609478 CAAACAATTGTTAAAGAGTGTACGTT 57.391 30.769 23.53 0.55 37.25 3.99
5448 5742 9.838339 GAGATGGAGGATTCTATTCAGTTTTAA 57.162 33.333 0.00 0.00 0.00 1.52
5449 5743 9.218525 AGAGATGGAGGATTCTATTCAGTTTTA 57.781 33.333 0.00 0.00 0.00 1.52
5450 5744 8.100135 AGAGATGGAGGATTCTATTCAGTTTT 57.900 34.615 0.00 0.00 0.00 2.43
5451 5745 7.688918 AGAGATGGAGGATTCTATTCAGTTT 57.311 36.000 0.00 0.00 0.00 2.66
5452 5746 7.688918 AAGAGATGGAGGATTCTATTCAGTT 57.311 36.000 0.00 0.00 0.00 3.16
5453 5747 7.346698 TGAAAGAGATGGAGGATTCTATTCAGT 59.653 37.037 0.00 0.00 30.56 3.41
5454 5748 7.733969 TGAAAGAGATGGAGGATTCTATTCAG 58.266 38.462 0.00 0.00 30.56 3.02
5455 5749 7.681259 TGAAAGAGATGGAGGATTCTATTCA 57.319 36.000 0.00 0.00 31.09 2.57
5456 5750 8.210265 AGTTGAAAGAGATGGAGGATTCTATTC 58.790 37.037 0.00 0.00 0.00 1.75
5457 5751 8.100135 AGTTGAAAGAGATGGAGGATTCTATT 57.900 34.615 0.00 0.00 0.00 1.73
5458 5752 7.688918 AGTTGAAAGAGATGGAGGATTCTAT 57.311 36.000 0.00 0.00 0.00 1.98
5459 5753 8.478877 GTTAGTTGAAAGAGATGGAGGATTCTA 58.521 37.037 0.00 0.00 0.00 2.10
5460 5754 7.334858 GTTAGTTGAAAGAGATGGAGGATTCT 58.665 38.462 0.00 0.00 0.00 2.40
5461 5755 6.540551 GGTTAGTTGAAAGAGATGGAGGATTC 59.459 42.308 0.00 0.00 0.00 2.52
5462 5756 6.216456 AGGTTAGTTGAAAGAGATGGAGGATT 59.784 38.462 0.00 0.00 0.00 3.01
5463 5757 5.728741 AGGTTAGTTGAAAGAGATGGAGGAT 59.271 40.000 0.00 0.00 0.00 3.24
5464 5758 5.094387 AGGTTAGTTGAAAGAGATGGAGGA 58.906 41.667 0.00 0.00 0.00 3.71
5465 5759 5.428184 AGGTTAGTTGAAAGAGATGGAGG 57.572 43.478 0.00 0.00 0.00 4.30
5466 5760 7.497249 CCATAAGGTTAGTTGAAAGAGATGGAG 59.503 40.741 0.00 0.00 32.42 3.86
5467 5761 7.182026 TCCATAAGGTTAGTTGAAAGAGATGGA 59.818 37.037 0.00 0.00 36.49 3.41
5468 5762 7.281100 GTCCATAAGGTTAGTTGAAAGAGATGG 59.719 40.741 0.00 0.00 35.89 3.51
5469 5763 7.824289 TGTCCATAAGGTTAGTTGAAAGAGATG 59.176 37.037 0.00 0.00 35.89 2.90
5470 5764 7.918076 TGTCCATAAGGTTAGTTGAAAGAGAT 58.082 34.615 0.00 0.00 35.89 2.75
5471 5765 7.311092 TGTCCATAAGGTTAGTTGAAAGAGA 57.689 36.000 0.00 0.00 35.89 3.10
5472 5766 8.567285 AATGTCCATAAGGTTAGTTGAAAGAG 57.433 34.615 0.00 0.00 35.89 2.85
5477 5771 9.442062 TCCTATAATGTCCATAAGGTTAGTTGA 57.558 33.333 0.00 0.00 35.89 3.18
5480 5774 9.448587 ACTTCCTATAATGTCCATAAGGTTAGT 57.551 33.333 0.00 0.00 35.89 2.24
5481 5775 9.712305 CACTTCCTATAATGTCCATAAGGTTAG 57.288 37.037 0.00 0.00 35.89 2.34
5482 5776 9.442062 TCACTTCCTATAATGTCCATAAGGTTA 57.558 33.333 0.00 0.00 35.89 2.85
5483 5777 8.331931 TCACTTCCTATAATGTCCATAAGGTT 57.668 34.615 0.00 0.00 35.89 3.50
5484 5778 7.931015 TCACTTCCTATAATGTCCATAAGGT 57.069 36.000 0.00 0.00 35.89 3.50
5485 5779 9.057089 GTTTCACTTCCTATAATGTCCATAAGG 57.943 37.037 0.00 0.00 0.00 2.69
5486 5780 9.057089 GGTTTCACTTCCTATAATGTCCATAAG 57.943 37.037 0.00 0.00 0.00 1.73
5487 5781 8.553153 TGGTTTCACTTCCTATAATGTCCATAA 58.447 33.333 0.00 0.00 0.00 1.90
5488 5782 8.096621 TGGTTTCACTTCCTATAATGTCCATA 57.903 34.615 0.00 0.00 0.00 2.74
5489 5783 6.969043 TGGTTTCACTTCCTATAATGTCCAT 58.031 36.000 0.00 0.00 0.00 3.41
5490 5784 6.381498 TGGTTTCACTTCCTATAATGTCCA 57.619 37.500 0.00 0.00 0.00 4.02
5491 5785 7.696992 TTTGGTTTCACTTCCTATAATGTCC 57.303 36.000 0.00 0.00 0.00 4.02
5492 5786 8.244113 CCTTTTGGTTTCACTTCCTATAATGTC 58.756 37.037 0.00 0.00 34.07 3.06
5493 5787 7.947890 TCCTTTTGGTTTCACTTCCTATAATGT 59.052 33.333 0.00 0.00 41.38 2.71
5494 5788 8.244113 GTCCTTTTGGTTTCACTTCCTATAATG 58.756 37.037 0.00 0.00 41.38 1.90
5495 5789 7.947890 TGTCCTTTTGGTTTCACTTCCTATAAT 59.052 33.333 0.00 0.00 41.38 1.28
5496 5790 7.291566 TGTCCTTTTGGTTTCACTTCCTATAA 58.708 34.615 0.00 0.00 41.38 0.98
5497 5791 6.843752 TGTCCTTTTGGTTTCACTTCCTATA 58.156 36.000 0.00 0.00 41.38 1.31
5498 5792 5.701224 TGTCCTTTTGGTTTCACTTCCTAT 58.299 37.500 0.00 0.00 41.38 2.57
5499 5793 5.118729 TGTCCTTTTGGTTTCACTTCCTA 57.881 39.130 0.00 0.00 41.38 2.94
5500 5794 3.976015 TGTCCTTTTGGTTTCACTTCCT 58.024 40.909 0.00 0.00 41.38 3.36
5501 5795 4.081917 TGTTGTCCTTTTGGTTTCACTTCC 60.082 41.667 0.00 0.00 41.38 3.46
5502 5796 5.066968 TGTTGTCCTTTTGGTTTCACTTC 57.933 39.130 0.00 0.00 41.38 3.01
5503 5797 5.418676 CATGTTGTCCTTTTGGTTTCACTT 58.581 37.500 0.00 0.00 41.38 3.16
5504 5798 4.141959 CCATGTTGTCCTTTTGGTTTCACT 60.142 41.667 0.00 0.00 41.38 3.41
5505 5799 4.119136 CCATGTTGTCCTTTTGGTTTCAC 58.881 43.478 0.00 0.00 41.38 3.18
5506 5800 3.772025 ACCATGTTGTCCTTTTGGTTTCA 59.228 39.130 0.00 0.00 37.40 2.69
5507 5801 4.142049 TGACCATGTTGTCCTTTTGGTTTC 60.142 41.667 0.00 0.00 40.67 2.78
5508 5802 3.772025 TGACCATGTTGTCCTTTTGGTTT 59.228 39.130 0.00 0.00 40.67 3.27
5509 5803 3.370104 TGACCATGTTGTCCTTTTGGTT 58.630 40.909 0.00 0.00 40.67 3.67
5510 5804 3.025322 TGACCATGTTGTCCTTTTGGT 57.975 42.857 0.00 0.00 43.19 3.67
5511 5805 5.720371 TTATGACCATGTTGTCCTTTTGG 57.280 39.130 0.00 0.00 42.21 3.28
5512 5806 6.980593 TCTTTATGACCATGTTGTCCTTTTG 58.019 36.000 0.00 0.00 34.25 2.44
5513 5807 7.004086 TCTCTTTATGACCATGTTGTCCTTTT 58.996 34.615 0.00 0.00 34.25 2.27
5514 5808 6.542821 TCTCTTTATGACCATGTTGTCCTTT 58.457 36.000 0.00 0.00 34.25 3.11
5515 5809 6.126863 TCTCTTTATGACCATGTTGTCCTT 57.873 37.500 0.00 0.00 34.25 3.36
5516 5810 5.762179 TCTCTTTATGACCATGTTGTCCT 57.238 39.130 0.00 0.00 34.25 3.85
5517 5811 6.201044 CGTATCTCTTTATGACCATGTTGTCC 59.799 42.308 0.00 0.00 34.25 4.02
5518 5812 6.201044 CCGTATCTCTTTATGACCATGTTGTC 59.799 42.308 0.00 0.00 35.77 3.18
5519 5813 6.049149 CCGTATCTCTTTATGACCATGTTGT 58.951 40.000 0.00 0.00 0.00 3.32
5520 5814 6.018751 CACCGTATCTCTTTATGACCATGTTG 60.019 42.308 0.00 0.00 0.00 3.33
5521 5815 6.049149 CACCGTATCTCTTTATGACCATGTT 58.951 40.000 0.00 0.00 0.00 2.71
5522 5816 5.601662 CACCGTATCTCTTTATGACCATGT 58.398 41.667 0.00 0.00 0.00 3.21
5523 5817 4.449068 GCACCGTATCTCTTTATGACCATG 59.551 45.833 0.00 0.00 0.00 3.66
5524 5818 4.100963 TGCACCGTATCTCTTTATGACCAT 59.899 41.667 0.00 0.00 0.00 3.55
5525 5819 3.449377 TGCACCGTATCTCTTTATGACCA 59.551 43.478 0.00 0.00 0.00 4.02
5526 5820 4.054780 TGCACCGTATCTCTTTATGACC 57.945 45.455 0.00 0.00 0.00 4.02
5527 5821 5.107837 CGATTGCACCGTATCTCTTTATGAC 60.108 44.000 0.00 0.00 0.00 3.06
5528 5822 4.982295 CGATTGCACCGTATCTCTTTATGA 59.018 41.667 0.00 0.00 0.00 2.15
5529 5823 4.982295 TCGATTGCACCGTATCTCTTTATG 59.018 41.667 7.45 0.00 0.00 1.90
5530 5824 5.196341 TCGATTGCACCGTATCTCTTTAT 57.804 39.130 7.45 0.00 0.00 1.40
5531 5825 4.642445 TCGATTGCACCGTATCTCTTTA 57.358 40.909 7.45 0.00 0.00 1.85
5532 5826 3.520290 TCGATTGCACCGTATCTCTTT 57.480 42.857 7.45 0.00 0.00 2.52
5533 5827 3.735237 ATCGATTGCACCGTATCTCTT 57.265 42.857 7.45 0.00 0.00 2.85
5534 5828 3.735237 AATCGATTGCACCGTATCTCT 57.265 42.857 10.50 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.