Multiple sequence alignment - TraesCS3D01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G265800 chr3D 100.000 5834 0 0 1 5834 368231387 368225554 0.000000e+00 10774
1 TraesCS3D01G265800 chr3A 88.273 2311 141 54 3600 5818 489752174 489749902 0.000000e+00 2647
2 TraesCS3D01G265800 chr3A 88.608 2212 124 43 493 2641 489755595 489753449 0.000000e+00 2571
3 TraesCS3D01G265800 chr3A 92.343 431 24 6 3131 3554 489752595 489752167 6.470000e-169 604
4 TraesCS3D01G265800 chr3A 89.602 452 29 11 2641 3090 489753118 489752683 5.110000e-155 558
5 TraesCS3D01G265800 chr3A 86.811 417 34 8 1 411 489757372 489756971 4.150000e-121 446
6 TraesCS3D01G265800 chr3B 87.647 2291 140 55 3600 5818 479578807 479576588 0.000000e+00 2531
7 TraesCS3D01G265800 chr3B 90.467 986 51 19 874 1818 479581849 479580866 0.000000e+00 1260
8 TraesCS3D01G265800 chr3B 92.503 787 43 8 1865 2641 479580864 479580084 0.000000e+00 1112
9 TraesCS3D01G265800 chr3B 92.111 431 25 6 3131 3554 479579228 479578800 3.010000e-167 599
10 TraesCS3D01G265800 chr3B 90.287 453 25 11 2641 3090 479579753 479579317 5.070000e-160 575
11 TraesCS3D01G265800 chr3B 88.290 427 26 15 374 791 479582276 479581865 1.890000e-134 490
12 TraesCS3D01G265800 chr3B 91.667 216 18 0 1 216 479611366 479611151 3.420000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G265800 chr3D 368225554 368231387 5833 True 10774.0 10774 100.0000 1 5834 1 chr3D.!!$R1 5833
1 TraesCS3D01G265800 chr3A 489749902 489757372 7470 True 1365.2 2647 89.1274 1 5818 5 chr3A.!!$R1 5817
2 TraesCS3D01G265800 chr3B 479576588 479582276 5688 True 1094.5 2531 90.2175 374 5818 6 chr3B.!!$R2 5444

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 173 0.249657 GCATAGGCTCTTCGGACCAG 60.250 60.000 0.0 0.00 36.96 4.00 F
1745 3172 0.097150 GCGCTACAAAGGTTAGCAGC 59.903 55.000 0.0 3.17 36.69 5.25 F
2570 4006 0.537653 TTGTCGATTGGTATGGGCGA 59.462 50.000 0.0 0.00 0.00 5.54 F
3110 4931 1.564348 GACATGGTTGGGACCTATGGT 59.436 52.381 0.0 0.00 46.66 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 3324 0.543646 AGCTGCCTGGCAATTTCCTT 60.544 50.0 23.51 0.37 38.41 3.36 R
3405 5230 0.250038 TGACACCACTCTGAAGCTGC 60.250 55.0 0.00 0.00 0.00 5.25 R
3749 5577 0.031917 TACCAACCCCCATCTCGCTA 60.032 55.0 0.00 0.00 0.00 4.26 R
5021 6893 0.109412 GCAGCAACTGATGAAGCACC 60.109 55.0 0.00 0.00 32.44 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.487086 GGCCTTGGCAACTTGGAATTTT 60.487 45.455 14.04 0.00 37.61 1.82
66 67 3.057315 ACAAATTGTATGAGGTGCACTGC 60.057 43.478 17.98 9.60 0.00 4.40
103 104 1.359848 GAGATGCACCTACACCAACG 58.640 55.000 0.00 0.00 0.00 4.10
104 105 0.973632 AGATGCACCTACACCAACGA 59.026 50.000 0.00 0.00 0.00 3.85
110 111 2.337583 CACCTACACCAACGATGTCAG 58.662 52.381 0.00 0.00 0.00 3.51
145 146 1.409064 CGCATCCAGCAGGTAAGACTA 59.591 52.381 0.00 0.00 46.13 2.59
161 166 4.664150 AGACTACTTGCATAGGCTCTTC 57.336 45.455 0.00 0.00 35.45 2.87
165 170 1.134670 ACTTGCATAGGCTCTTCGGAC 60.135 52.381 0.00 0.00 41.91 4.79
168 173 0.249657 GCATAGGCTCTTCGGACCAG 60.250 60.000 0.00 0.00 36.96 4.00
177 182 3.378427 GCTCTTCGGACCAGCAATTTTAT 59.622 43.478 3.08 0.00 0.00 1.40
190 195 9.218440 ACCAGCAATTTTATTACAAATGGAAAG 57.782 29.630 0.00 0.00 0.00 2.62
191 196 9.218440 CCAGCAATTTTATTACAAATGGAAAGT 57.782 29.630 0.00 0.00 0.00 2.66
204 209 8.103948 ACAAATGGAAAGTAGAGAGACAAATG 57.896 34.615 0.00 0.00 0.00 2.32
212 217 6.713762 AGTAGAGAGACAAATGATGGAGAG 57.286 41.667 0.00 0.00 0.00 3.20
253 258 9.483916 AATCCATTAACGACGATGACATATAAA 57.516 29.630 0.00 0.00 0.00 1.40
257 262 4.556942 ACGACGATGACATATAAACGGA 57.443 40.909 0.00 0.00 0.00 4.69
260 265 5.457799 ACGACGATGACATATAAACGGAAAG 59.542 40.000 0.00 0.00 0.00 2.62
281 286 4.340617 AGTGATATTTCTTTTGCGGGGAA 58.659 39.130 0.00 0.00 0.00 3.97
308 315 4.783764 ACGGGAAAATGAGATTGTTTCC 57.216 40.909 5.95 5.95 46.38 3.13
325 332 9.474920 GATTGTTTCCAAAAGAATGTTCACATA 57.525 29.630 0.17 0.00 33.18 2.29
329 336 9.959749 GTTTCCAAAAGAATGTTCACATACTTA 57.040 29.630 0.00 0.00 35.10 2.24
406 413 4.391405 AAACCTTTGCAAACTGAAGAGG 57.609 40.909 8.05 8.68 0.00 3.69
411 418 1.774110 TGCAAACTGAAGAGGCCAAA 58.226 45.000 5.01 0.00 0.00 3.28
412 419 1.682854 TGCAAACTGAAGAGGCCAAAG 59.317 47.619 5.01 0.00 0.00 2.77
415 422 1.149101 AACTGAAGAGGCCAAAGGGA 58.851 50.000 5.01 0.00 35.59 4.20
446 453 2.549754 CACTGAAAACTGGATGAACGCT 59.450 45.455 0.00 0.00 0.00 5.07
508 1855 4.752604 TGTTTGCTCAACTATTTGACGCTA 59.247 37.500 13.95 7.52 36.79 4.26
605 1956 1.538047 ACAACTTTCCATCAGCGCAT 58.462 45.000 11.47 0.00 0.00 4.73
632 1988 4.787280 CTCCTCGGCACCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
669 2025 3.349006 CGCACACCGCTGCTCTTT 61.349 61.111 0.00 0.00 39.08 2.52
798 2162 1.960994 GACGCTTCTTCTTGCTCGCC 61.961 60.000 0.00 0.00 0.00 5.54
799 2163 1.739562 CGCTTCTTCTTGCTCGCCT 60.740 57.895 0.00 0.00 0.00 5.52
811 2175 1.536766 TGCTCGCCTCATTTGTTCTTG 59.463 47.619 0.00 0.00 0.00 3.02
831 2195 0.969149 TGTACCTCACTCCTGTGCAG 59.031 55.000 0.00 0.00 43.49 4.41
832 2196 4.553828 GTGTACCTCACTCCTGTGCAGG 62.554 59.091 11.82 11.82 43.49 4.85
859 2223 5.279456 GCAGGACTATTTGGTTGGACATTTT 60.279 40.000 0.00 0.00 0.00 1.82
871 2235 6.207614 TGGTTGGACATTTTGTTATCGATTGA 59.792 34.615 1.71 0.00 0.00 2.57
924 2298 5.811399 TCCCATACTGTTTTATGCTTTCG 57.189 39.130 0.00 0.00 0.00 3.46
934 2310 8.015658 ACTGTTTTATGCTTTCGTATGAGTTTC 58.984 33.333 0.00 0.00 0.00 2.78
954 2330 8.047413 AGTTTCTTTTTCTAGTTTTTCACCGA 57.953 30.769 0.00 0.00 0.00 4.69
963 2339 6.218746 TCTAGTTTTTCACCGAGGTTTACTC 58.781 40.000 0.00 0.00 43.02 2.59
1137 2538 3.853806 ATCGATCCCATCCCCGCCT 62.854 63.158 0.00 0.00 0.00 5.52
1141 2542 1.775877 ATCCCATCCCCGCCTCATT 60.776 57.895 0.00 0.00 0.00 2.57
1389 2790 3.033114 TGCGCAATTTGCACTATGC 57.967 47.368 20.56 14.97 45.36 3.14
1511 2912 2.917933 TCTGTGGTATGGCTACAATGC 58.082 47.619 0.00 0.00 38.12 3.56
1526 2927 2.997303 ACAATGCGTCGCTACAAATGTA 59.003 40.909 19.50 0.00 0.00 2.29
1530 2931 1.587034 GCGTCGCTACAAATGTACCTC 59.413 52.381 10.68 0.00 0.00 3.85
1531 2932 1.844357 CGTCGCTACAAATGTACCTCG 59.156 52.381 0.00 0.00 0.00 4.63
1592 3019 5.835113 TTTTCCCTTCTGTGTTCTCAAAG 57.165 39.130 0.00 0.00 0.00 2.77
1594 3021 1.882623 CCCTTCTGTGTTCTCAAAGCC 59.117 52.381 0.00 0.00 0.00 4.35
1653 3080 6.854496 AGTCATTTACTCGCTTGTTAAACA 57.146 33.333 0.00 0.00 30.33 2.83
1678 3105 8.627403 CATGCTCTTCAGGTTGATAATTATGTT 58.373 33.333 1.78 0.00 0.00 2.71
1744 3171 1.394917 CTGCGCTACAAAGGTTAGCAG 59.605 52.381 9.73 0.10 39.39 4.24
1745 3172 0.097150 GCGCTACAAAGGTTAGCAGC 59.903 55.000 0.00 3.17 36.69 5.25
1749 3176 2.615493 GCTACAAAGGTTAGCAGCTCCA 60.615 50.000 0.00 0.00 36.86 3.86
1785 3212 3.190118 AGCTCGCTTTCTTCCAATCTTTG 59.810 43.478 0.00 0.00 0.00 2.77
1807 3234 1.301716 GGCACCTTCTCAACTCGCA 60.302 57.895 0.00 0.00 0.00 5.10
1818 3245 3.506067 TCTCAACTCGCATCTGTTACTGA 59.494 43.478 0.00 0.00 0.00 3.41
1836 3263 8.857098 TGTTACTGATTTACTTGACTCTGTACT 58.143 33.333 0.00 0.00 0.00 2.73
1837 3264 9.694137 GTTACTGATTTACTTGACTCTGTACTT 57.306 33.333 0.00 0.00 0.00 2.24
1838 3265 9.692749 TTACTGATTTACTTGACTCTGTACTTG 57.307 33.333 0.00 0.00 0.00 3.16
1839 3266 7.727181 ACTGATTTACTTGACTCTGTACTTGT 58.273 34.615 0.00 0.00 0.00 3.16
1841 3268 7.722363 TGATTTACTTGACTCTGTACTTGTGA 58.278 34.615 0.00 0.00 0.00 3.58
1842 3269 7.652105 TGATTTACTTGACTCTGTACTTGTGAC 59.348 37.037 0.00 0.00 0.00 3.67
1844 3271 4.938080 ACTTGACTCTGTACTTGTGACTG 58.062 43.478 0.00 0.00 0.00 3.51
1845 3272 4.402793 ACTTGACTCTGTACTTGTGACTGT 59.597 41.667 0.00 0.00 0.00 3.55
1846 3273 4.307443 TGACTCTGTACTTGTGACTGTG 57.693 45.455 0.00 0.00 0.00 3.66
1847 3274 3.699538 TGACTCTGTACTTGTGACTGTGT 59.300 43.478 0.00 0.00 0.00 3.72
1849 3276 5.358725 TGACTCTGTACTTGTGACTGTGTTA 59.641 40.000 0.00 0.00 0.00 2.41
1850 3277 5.833082 ACTCTGTACTTGTGACTGTGTTAG 58.167 41.667 0.00 0.00 0.00 2.34
1862 3290 2.829720 ACTGTGTTAGTCGCTCCCATTA 59.170 45.455 0.00 0.00 33.17 1.90
1885 3313 6.415206 AAGCCATGCTGATATTTTTGCTAT 57.585 33.333 0.00 0.00 39.62 2.97
1931 3359 0.689055 AGCTGTGTCTGGAGCATCAA 59.311 50.000 0.00 0.00 37.70 2.57
2026 3454 2.026262 TCCAAATGGGCTGAAGGTAGAC 60.026 50.000 0.00 0.00 36.21 2.59
2054 3482 7.835634 AAGTCTTCTTATTTAGGCTTCTTCG 57.164 36.000 0.00 0.00 30.91 3.79
2106 3534 5.165676 TGTTACGGTCAGTACTGCATTAAG 58.834 41.667 18.45 8.23 35.17 1.85
2109 3537 4.683832 ACGGTCAGTACTGCATTAAGATC 58.316 43.478 18.45 0.00 35.17 2.75
2111 3539 4.504461 CGGTCAGTACTGCATTAAGATCAC 59.496 45.833 18.45 6.73 0.00 3.06
2128 3556 5.645624 AGATCACGAACACTTCTCAGTATG 58.354 41.667 0.00 0.00 37.54 2.39
2270 3698 3.823304 ACCTCTTTGCTCAGGTTGAAATC 59.177 43.478 0.00 0.00 40.35 2.17
2298 3733 2.174685 TGCCTTCTGCTCCTATACCA 57.825 50.000 0.00 0.00 42.00 3.25
2344 3779 7.380602 GTCCATTTTATTGAATATCAGCTGCAC 59.619 37.037 9.47 0.00 0.00 4.57
2345 3780 7.068470 TCCATTTTATTGAATATCAGCTGCACA 59.932 33.333 9.47 1.55 0.00 4.57
2346 3781 7.707464 CCATTTTATTGAATATCAGCTGCACAA 59.293 33.333 9.47 10.49 0.00 3.33
2351 3786 6.954616 TTGAATATCAGCTGCACAAAATTG 57.045 33.333 9.47 0.00 0.00 2.32
2358 3793 1.860326 GCTGCACAAAATTGTCACACC 59.140 47.619 0.00 0.00 39.91 4.16
2362 3797 4.511527 TGCACAAAATTGTCACACCAATT 58.488 34.783 0.00 0.00 44.71 2.32
2413 3849 8.196771 ACAGAAAAAGTCATAACATGCTTTCAA 58.803 29.630 0.00 0.00 36.40 2.69
2419 3855 7.744087 AGTCATAACATGCTTTCAAGTAACA 57.256 32.000 0.00 0.00 0.00 2.41
2444 3880 4.666512 ACTGGCATTTTTACATGAGAGGT 58.333 39.130 0.00 0.00 0.00 3.85
2453 3889 5.692115 TTTACATGAGAGGTTGGCTGATA 57.308 39.130 0.00 0.00 0.00 2.15
2467 3903 6.436261 GTTGGCTGATATTCATGATGTTCTG 58.564 40.000 0.00 0.00 0.00 3.02
2491 3927 1.002502 GGGGAAGCAGCGGTTACTT 60.003 57.895 0.00 0.00 0.00 2.24
2546 3982 1.603802 CACAAGCTGTCGTCATTGGTT 59.396 47.619 0.00 0.00 0.00 3.67
2554 3990 3.275143 TGTCGTCATTGGTTTGAGTTGT 58.725 40.909 0.00 0.00 0.00 3.32
2567 4003 3.260475 TGAGTTGTCGATTGGTATGGG 57.740 47.619 0.00 0.00 0.00 4.00
2569 4005 0.655733 GTTGTCGATTGGTATGGGCG 59.344 55.000 0.00 0.00 0.00 6.13
2570 4006 0.537653 TTGTCGATTGGTATGGGCGA 59.462 50.000 0.00 0.00 0.00 5.54
2571 4007 2.601562 GTCGATTGGTATGGGCGAC 58.398 57.895 0.00 0.00 43.37 5.19
2572 4008 2.203806 TCGATTGGTATGGGCGACA 58.796 52.632 0.00 0.00 0.00 4.35
2597 4034 5.627499 TCTCATGCTTTAGTCGCATTTTT 57.373 34.783 0.00 0.00 45.18 1.94
2611 4048 3.456280 GCATTTTTCACCAAGCAAGTCA 58.544 40.909 0.00 0.00 0.00 3.41
2617 4054 3.117491 TCACCAAGCAAGTCAGAGAAG 57.883 47.619 0.00 0.00 0.00 2.85
2625 4062 7.099764 CCAAGCAAGTCAGAGAAGTATTTCTA 58.900 38.462 0.00 0.00 43.63 2.10
2626 4063 7.277539 CCAAGCAAGTCAGAGAAGTATTTCTAG 59.722 40.741 0.00 0.00 43.63 2.43
2632 4069 8.644374 AGTCAGAGAAGTATTTCTAGTGAGTT 57.356 34.615 10.94 3.45 43.63 3.01
2635 4072 8.735315 TCAGAGAAGTATTTCTAGTGAGTTGAG 58.265 37.037 0.00 0.00 43.63 3.02
2645 4413 8.818141 TTTCTAGTGAGTTGAGTTCTTATGTG 57.182 34.615 0.00 0.00 0.00 3.21
2657 4425 7.152645 TGAGTTCTTATGTGTTCTTGTAGGAC 58.847 38.462 0.00 0.00 0.00 3.85
2667 4435 3.232213 TCTTGTAGGACGCAGATCAAC 57.768 47.619 0.00 0.00 0.00 3.18
2702 4470 2.096819 AGTTCGATCTCGCTTCTCTCAC 59.903 50.000 0.00 0.00 39.60 3.51
2732 4500 8.237811 AGCTTCTTTTTGTTCCTTCTTCATTA 57.762 30.769 0.00 0.00 0.00 1.90
2779 4547 9.103861 CTTGTACTTTCTCAGTTTTTCTCTTCT 57.896 33.333 0.00 0.00 36.88 2.85
2780 4548 9.449719 TTGTACTTTCTCAGTTTTTCTCTTCTT 57.550 29.630 0.00 0.00 36.88 2.52
2781 4549 9.099454 TGTACTTTCTCAGTTTTTCTCTTCTTC 57.901 33.333 0.00 0.00 36.88 2.87
2782 4550 9.099454 GTACTTTCTCAGTTTTTCTCTTCTTCA 57.901 33.333 0.00 0.00 36.88 3.02
2783 4551 8.567285 ACTTTCTCAGTTTTTCTCTTCTTCAA 57.433 30.769 0.00 0.00 27.32 2.69
2784 4552 8.672815 ACTTTCTCAGTTTTTCTCTTCTTCAAG 58.327 33.333 0.00 0.00 27.32 3.02
2786 4554 7.545362 TCTCAGTTTTTCTCTTCTTCAAGTG 57.455 36.000 0.00 0.00 0.00 3.16
2787 4555 7.331026 TCTCAGTTTTTCTCTTCTTCAAGTGA 58.669 34.615 0.00 0.00 31.63 3.41
2788 4556 7.989741 TCTCAGTTTTTCTCTTCTTCAAGTGAT 59.010 33.333 0.00 0.00 33.24 3.06
2789 4557 9.265901 CTCAGTTTTTCTCTTCTTCAAGTGATA 57.734 33.333 0.00 0.00 33.24 2.15
2790 4558 9.613428 TCAGTTTTTCTCTTCTTCAAGTGATAA 57.387 29.630 0.00 0.00 33.24 1.75
2791 4559 9.875675 CAGTTTTTCTCTTCTTCAAGTGATAAG 57.124 33.333 0.00 0.00 33.24 1.73
2799 4567 9.322773 CTCTTCTTCAAGTGATAAGATGCATTA 57.677 33.333 0.00 0.00 32.05 1.90
2814 4582 8.531622 AAGATGCATTATTGATCTAGTTCTCG 57.468 34.615 0.00 0.00 0.00 4.04
2883 4651 8.840321 GGAACATTTGCTAATGCTAGATAAAGA 58.160 33.333 18.92 0.00 44.05 2.52
2905 4673 5.047235 AGACTCGAGCTTACCAACAAACTAT 60.047 40.000 13.61 0.00 0.00 2.12
2925 4693 8.475331 AACTATGTTACGGAGTACAATTCAAG 57.525 34.615 0.00 0.00 45.76 3.02
2943 4711 5.099042 TCAAGGCTTACTGTATCCTTTCC 57.901 43.478 15.14 1.31 36.85 3.13
2971 4739 5.739959 TGTAACCTTTCACTGCATATGCTA 58.260 37.500 27.13 13.37 42.66 3.49
2972 4740 6.356556 TGTAACCTTTCACTGCATATGCTAT 58.643 36.000 27.13 13.24 42.66 2.97
2973 4741 6.828273 TGTAACCTTTCACTGCATATGCTATT 59.172 34.615 27.13 9.58 42.66 1.73
2975 4743 9.003658 GTAACCTTTCACTGCATATGCTATTAT 57.996 33.333 27.13 6.59 42.66 1.28
2976 4744 7.444629 ACCTTTCACTGCATATGCTATTATG 57.555 36.000 27.13 17.03 42.66 1.90
2987 4755 4.843220 ATGCTATTATGCTTGCAGAACC 57.157 40.909 4.76 0.00 38.87 3.62
2988 4756 3.889815 TGCTATTATGCTTGCAGAACCT 58.110 40.909 4.76 0.00 0.00 3.50
2989 4757 5.034852 TGCTATTATGCTTGCAGAACCTA 57.965 39.130 4.76 0.00 0.00 3.08
2990 4758 4.816385 TGCTATTATGCTTGCAGAACCTAC 59.184 41.667 4.76 0.00 0.00 3.18
2991 4759 4.214332 GCTATTATGCTTGCAGAACCTACC 59.786 45.833 4.76 0.00 0.00 3.18
3003 4771 4.576463 GCAGAACCTACCTATTGGTCATTG 59.424 45.833 0.79 0.00 44.78 2.82
3008 4776 5.580022 ACCTACCTATTGGTCATTGCTTTT 58.420 37.500 0.79 0.00 44.78 2.27
3019 4787 8.948631 TTGGTCATTGCTTTTAATGTTTGTTA 57.051 26.923 0.00 0.00 38.77 2.41
3022 4790 9.202273 GGTCATTGCTTTTAATGTTTGTTATCA 57.798 29.630 0.00 0.00 38.77 2.15
3098 4919 6.380079 AAATCTGGTCTCTTAGACATGGTT 57.620 37.500 9.15 1.40 46.79 3.67
3104 4925 2.838202 TCTCTTAGACATGGTTGGGACC 59.162 50.000 0.00 0.00 46.71 4.46
3105 4926 2.840651 CTCTTAGACATGGTTGGGACCT 59.159 50.000 0.00 0.00 46.66 3.85
3106 4927 4.030913 CTCTTAGACATGGTTGGGACCTA 58.969 47.826 0.00 0.00 46.66 3.08
3107 4928 4.631234 TCTTAGACATGGTTGGGACCTAT 58.369 43.478 0.00 0.00 46.66 2.57
3109 4930 1.846439 AGACATGGTTGGGACCTATGG 59.154 52.381 0.00 0.00 46.66 2.74
3110 4931 1.564348 GACATGGTTGGGACCTATGGT 59.436 52.381 0.00 0.00 46.66 3.55
3111 4932 2.775384 GACATGGTTGGGACCTATGGTA 59.225 50.000 0.00 0.00 46.66 3.25
3113 4934 3.394606 ACATGGTTGGGACCTATGGTATC 59.605 47.826 0.00 0.00 46.66 2.24
3116 4937 3.714798 TGGTTGGGACCTATGGTATCTTC 59.285 47.826 0.00 0.00 46.66 2.87
3117 4938 3.974642 GGTTGGGACCTATGGTATCTTCT 59.025 47.826 0.00 0.00 42.99 2.85
3118 4939 4.040584 GGTTGGGACCTATGGTATCTTCTC 59.959 50.000 0.00 0.00 42.99 2.87
3119 4940 4.834406 TGGGACCTATGGTATCTTCTCT 57.166 45.455 0.00 0.00 35.25 3.10
3120 4941 4.742012 TGGGACCTATGGTATCTTCTCTC 58.258 47.826 0.00 0.00 35.25 3.20
3122 4943 5.014202 GGGACCTATGGTATCTTCTCTCTC 58.986 50.000 0.00 0.00 35.25 3.20
3123 4944 5.222254 GGGACCTATGGTATCTTCTCTCTCT 60.222 48.000 0.00 0.00 35.25 3.10
3124 4945 6.012333 GGGACCTATGGTATCTTCTCTCTCTA 60.012 46.154 0.00 0.00 35.25 2.43
3125 4946 7.463431 GGACCTATGGTATCTTCTCTCTCTAA 58.537 42.308 0.00 0.00 35.25 2.10
3127 4948 9.357161 GACCTATGGTATCTTCTCTCTCTAAAA 57.643 37.037 0.00 0.00 35.25 1.52
3128 4949 9.716556 ACCTATGGTATCTTCTCTCTCTAAAAA 57.283 33.333 0.00 0.00 32.11 1.94
3166 4987 6.069905 TGGTATCATTCCAGTAAGTTGCCTTA 60.070 38.462 0.00 0.00 31.89 2.69
3193 5018 7.765360 AGGCATATTTATTTGTGTTCCATTGTG 59.235 33.333 0.00 0.00 0.00 3.33
3255 5080 5.676079 GCCGTAGAGCATTTTCAGCAATAAA 60.676 40.000 0.00 0.00 0.00 1.40
3291 5116 2.431419 TCTCGACTCTCTCACGGATACT 59.569 50.000 0.00 0.00 0.00 2.12
3294 5119 2.285756 CGACTCTCTCACGGATACTGAC 59.714 54.545 0.00 0.00 0.00 3.51
3330 5155 5.606348 ACATCCTGAGATTTCTGTAGGTC 57.394 43.478 7.14 0.00 32.04 3.85
3353 5178 2.297701 TCAGCAGTTTGTTTGGTCCTC 58.702 47.619 0.00 0.00 0.00 3.71
3362 5187 4.519906 TTGTTTGGTCCTCTTCCTCTTT 57.480 40.909 0.00 0.00 0.00 2.52
3373 5198 7.394641 GGTCCTCTTCCTCTTTACAATTTCAAT 59.605 37.037 0.00 0.00 0.00 2.57
3405 5230 7.855904 GGTTATTAGCTAAATGTGGAAATCGTG 59.144 37.037 10.85 0.00 0.00 4.35
3433 5258 5.791336 TCAGAGTGGTGTCATATATGGAC 57.209 43.478 12.78 9.50 35.83 4.02
3446 5271 7.183293 TGTCATATATGGACATGGAATCTGGAT 59.817 37.037 12.78 0.00 40.16 3.41
3470 5295 3.689161 TCTGTCAATGGAATGCTTTACGG 59.311 43.478 0.00 0.00 0.00 4.02
3530 5355 4.947388 ACAGTTTGCAAGGTCTCTTTGTTA 59.053 37.500 0.00 0.00 0.00 2.41
3531 5356 5.163652 ACAGTTTGCAAGGTCTCTTTGTTAC 60.164 40.000 0.00 0.00 0.00 2.50
3535 5360 4.776349 TGCAAGGTCTCTTTGTTACTTGA 58.224 39.130 0.00 0.00 37.98 3.02
3549 5374 6.554334 TGTTACTTGACCTGAATTTACTGC 57.446 37.500 0.00 0.00 0.00 4.40
3550 5375 6.058833 TGTTACTTGACCTGAATTTACTGCA 58.941 36.000 0.00 0.00 0.00 4.41
3551 5376 6.017440 TGTTACTTGACCTGAATTTACTGCAC 60.017 38.462 0.00 0.00 0.00 4.57
3552 5377 4.718961 ACTTGACCTGAATTTACTGCACT 58.281 39.130 0.00 0.00 0.00 4.40
3553 5378 5.133221 ACTTGACCTGAATTTACTGCACTT 58.867 37.500 0.00 0.00 0.00 3.16
3554 5379 6.296026 ACTTGACCTGAATTTACTGCACTTA 58.704 36.000 0.00 0.00 0.00 2.24
3555 5380 6.428159 ACTTGACCTGAATTTACTGCACTTAG 59.572 38.462 0.00 0.00 0.00 2.18
3556 5381 6.109156 TGACCTGAATTTACTGCACTTAGA 57.891 37.500 0.00 0.00 0.00 2.10
3557 5382 5.932303 TGACCTGAATTTACTGCACTTAGAC 59.068 40.000 0.00 0.00 0.00 2.59
3558 5383 6.115448 ACCTGAATTTACTGCACTTAGACT 57.885 37.500 0.00 0.00 0.00 3.24
3559 5384 7.039293 TGACCTGAATTTACTGCACTTAGACTA 60.039 37.037 0.00 0.00 0.00 2.59
3560 5385 7.324178 ACCTGAATTTACTGCACTTAGACTAG 58.676 38.462 0.00 0.00 0.00 2.57
3561 5386 6.256757 CCTGAATTTACTGCACTTAGACTAGC 59.743 42.308 0.00 0.00 0.00 3.42
3562 5387 6.697395 TGAATTTACTGCACTTAGACTAGCA 58.303 36.000 0.00 0.00 35.43 3.49
3563 5388 6.590292 TGAATTTACTGCACTTAGACTAGCAC 59.410 38.462 0.00 0.00 32.87 4.40
3564 5389 5.723672 TTTACTGCACTTAGACTAGCACT 57.276 39.130 0.00 0.00 32.87 4.40
3565 5390 6.829229 TTTACTGCACTTAGACTAGCACTA 57.171 37.500 0.00 0.00 32.87 2.74
3566 5391 6.829229 TTACTGCACTTAGACTAGCACTAA 57.171 37.500 8.87 8.87 32.87 2.24
3567 5392 5.317733 ACTGCACTTAGACTAGCACTAAG 57.682 43.478 23.78 23.78 46.82 2.18
3568 5393 4.109050 CTGCACTTAGACTAGCACTAAGC 58.891 47.826 24.63 17.88 45.96 3.09
3569 5394 3.119101 TGCACTTAGACTAGCACTAAGCC 60.119 47.826 24.63 19.21 45.96 4.35
3570 5395 3.131400 GCACTTAGACTAGCACTAAGCCT 59.869 47.826 24.63 12.39 45.96 4.58
3571 5396 4.338682 GCACTTAGACTAGCACTAAGCCTA 59.661 45.833 24.63 3.07 45.96 3.93
3572 5397 5.163540 GCACTTAGACTAGCACTAAGCCTAA 60.164 44.000 24.63 7.33 45.96 2.69
3573 5398 6.500041 CACTTAGACTAGCACTAAGCCTAAG 58.500 44.000 24.63 14.86 45.96 2.18
3574 5399 5.595133 ACTTAGACTAGCACTAAGCCTAAGG 59.405 44.000 24.63 10.57 45.96 2.69
3575 5400 6.580659 ACTTAGACTAGCACTAAGCCTAAGGA 60.581 42.308 24.63 1.01 45.96 3.36
3576 5401 7.859676 ACTTAGACTAGCACTAAGCCTAAGGAT 60.860 40.741 24.63 9.99 45.96 3.24
3580 5405 3.118905 GCACTAAGCCTAAGGATGGAG 57.881 52.381 0.00 0.00 37.23 3.86
3581 5406 2.700897 GCACTAAGCCTAAGGATGGAGA 59.299 50.000 0.00 0.00 37.23 3.71
3582 5407 3.326297 GCACTAAGCCTAAGGATGGAGAT 59.674 47.826 0.00 0.00 37.23 2.75
3583 5408 4.202409 GCACTAAGCCTAAGGATGGAGATT 60.202 45.833 0.00 0.00 37.23 2.40
3584 5409 5.012148 GCACTAAGCCTAAGGATGGAGATTA 59.988 44.000 0.00 0.00 37.23 1.75
3585 5410 6.296145 GCACTAAGCCTAAGGATGGAGATTAT 60.296 42.308 0.00 0.00 37.23 1.28
3586 5411 7.093289 GCACTAAGCCTAAGGATGGAGATTATA 60.093 40.741 0.00 0.00 37.23 0.98
3587 5412 8.474025 CACTAAGCCTAAGGATGGAGATTATAG 58.526 40.741 0.00 0.00 0.00 1.31
3588 5413 8.402683 ACTAAGCCTAAGGATGGAGATTATAGA 58.597 37.037 0.00 0.00 0.00 1.98
3589 5414 9.261035 CTAAGCCTAAGGATGGAGATTATAGAA 57.739 37.037 0.00 0.00 0.00 2.10
3590 5415 8.511748 AAGCCTAAGGATGGAGATTATAGAAA 57.488 34.615 0.00 0.00 0.00 2.52
3591 5416 8.511748 AGCCTAAGGATGGAGATTATAGAAAA 57.488 34.615 0.00 0.00 0.00 2.29
3592 5417 8.379331 AGCCTAAGGATGGAGATTATAGAAAAC 58.621 37.037 0.00 0.00 0.00 2.43
3593 5418 8.379331 GCCTAAGGATGGAGATTATAGAAAACT 58.621 37.037 0.00 0.00 0.00 2.66
3594 5419 9.936759 CCTAAGGATGGAGATTATAGAAAACTC 57.063 37.037 0.00 0.00 0.00 3.01
3595 5420 9.936759 CTAAGGATGGAGATTATAGAAAACTCC 57.063 37.037 15.31 15.31 44.90 3.85
3606 5431 7.907214 TTATAGAAAACTCCAAAGACAGCTC 57.093 36.000 0.00 0.00 0.00 4.09
3612 5437 3.654414 ACTCCAAAGACAGCTCTTTACG 58.346 45.455 1.00 0.00 43.70 3.18
3704 5530 5.700832 GTGGTGTCTTATGATCTTGTTGACA 59.299 40.000 0.00 2.27 0.00 3.58
3710 5536 8.032451 TGTCTTATGATCTTGTTGACATCGTAA 58.968 33.333 0.00 0.00 0.00 3.18
3755 5583 9.557338 GTACTTACCATGATTTAGTATAGCGAG 57.443 37.037 0.00 0.00 0.00 5.03
3769 5597 1.153229 GCGAGATGGGGGTTGGTAC 60.153 63.158 0.00 0.00 0.00 3.34
3787 5617 0.973632 ACGAGTGGCTGGATTGTGTA 59.026 50.000 0.00 0.00 0.00 2.90
3788 5618 1.337823 ACGAGTGGCTGGATTGTGTAC 60.338 52.381 0.00 0.00 0.00 2.90
3793 5623 1.003118 TGGCTGGATTGTGTACAGGTC 59.997 52.381 0.00 0.00 39.36 3.85
3795 5625 2.007049 GCTGGATTGTGTACAGGTCGG 61.007 57.143 0.00 0.00 39.36 4.79
3803 5633 4.118093 TGTGTACAGGTCGGATATGTTG 57.882 45.455 0.00 0.00 0.00 3.33
3864 5695 7.707104 AGTAAAAATGGGCTAATCATTCTTCG 58.293 34.615 0.00 0.00 34.15 3.79
3865 5696 5.520376 AAAATGGGCTAATCATTCTTCGG 57.480 39.130 0.00 0.00 34.15 4.30
3870 5701 4.407621 TGGGCTAATCATTCTTCGGACTAA 59.592 41.667 0.00 0.00 0.00 2.24
3881 5712 1.410004 TCGGACTAATAGGGGCACTG 58.590 55.000 0.00 0.00 0.00 3.66
3902 5733 6.516718 ACTGACGGTGATTATAGATGGAAAG 58.483 40.000 0.00 0.00 0.00 2.62
3904 5735 5.365605 TGACGGTGATTATAGATGGAAAGGT 59.634 40.000 0.00 0.00 0.00 3.50
3906 5737 6.055588 ACGGTGATTATAGATGGAAAGGTTG 58.944 40.000 0.00 0.00 0.00 3.77
3907 5738 6.055588 CGGTGATTATAGATGGAAAGGTTGT 58.944 40.000 0.00 0.00 0.00 3.32
3908 5739 6.017934 CGGTGATTATAGATGGAAAGGTTGTG 60.018 42.308 0.00 0.00 0.00 3.33
3910 5741 7.054124 GTGATTATAGATGGAAAGGTTGTGGA 58.946 38.462 0.00 0.00 0.00 4.02
3911 5742 7.556275 GTGATTATAGATGGAAAGGTTGTGGAA 59.444 37.037 0.00 0.00 0.00 3.53
3913 5744 9.136323 GATTATAGATGGAAAGGTTGTGGAAAT 57.864 33.333 0.00 0.00 0.00 2.17
3981 5813 6.195700 AGAGGCACTTTTGGAGTAGTATCTA 58.804 40.000 0.00 0.00 41.55 1.98
4011 5843 3.720002 TCTTTTTCTGGGAGTGGTACCTT 59.280 43.478 14.36 0.73 0.00 3.50
4015 5847 0.905357 CTGGGAGTGGTACCTTCCTG 59.095 60.000 25.61 18.20 30.62 3.86
4018 5850 2.316677 TGGGAGTGGTACCTTCCTGATA 59.683 50.000 25.61 13.32 30.62 2.15
4036 5868 5.395324 CCTGATATTCTCCACGTTTGTAGGT 60.395 44.000 0.00 0.00 0.00 3.08
4037 5869 5.416083 TGATATTCTCCACGTTTGTAGGTG 58.584 41.667 0.00 0.00 39.32 4.00
4043 5875 2.825861 CACGTTTGTAGGTGGTAGGT 57.174 50.000 0.00 0.00 36.70 3.08
4044 5876 2.680577 CACGTTTGTAGGTGGTAGGTC 58.319 52.381 0.00 0.00 36.70 3.85
4045 5877 1.270550 ACGTTTGTAGGTGGTAGGTCG 59.729 52.381 0.00 0.00 0.00 4.79
4046 5878 1.270550 CGTTTGTAGGTGGTAGGTCGT 59.729 52.381 0.00 0.00 0.00 4.34
4047 5879 2.487762 CGTTTGTAGGTGGTAGGTCGTA 59.512 50.000 0.00 0.00 0.00 3.43
4048 5880 3.426695 CGTTTGTAGGTGGTAGGTCGTAG 60.427 52.174 0.00 0.00 0.00 3.51
4049 5881 2.425143 TGTAGGTGGTAGGTCGTAGG 57.575 55.000 0.00 0.00 0.00 3.18
4050 5882 1.635487 TGTAGGTGGTAGGTCGTAGGT 59.365 52.381 0.00 0.00 0.00 3.08
4051 5883 2.041620 TGTAGGTGGTAGGTCGTAGGTT 59.958 50.000 0.00 0.00 0.00 3.50
4052 5884 3.265737 TGTAGGTGGTAGGTCGTAGGTTA 59.734 47.826 0.00 0.00 0.00 2.85
4132 5964 7.270757 TCAACAAACATGTTATACTGTTGCT 57.729 32.000 31.11 11.41 42.02 3.91
4152 5984 3.426426 GCTCTGAGCTTGCTCTCATTTTG 60.426 47.826 21.93 7.67 41.73 2.44
4153 5985 3.748083 TCTGAGCTTGCTCTCATTTTGT 58.252 40.909 21.17 0.00 41.73 2.83
4155 5987 5.308014 TCTGAGCTTGCTCTCATTTTGTTA 58.692 37.500 21.17 0.00 41.73 2.41
4156 5988 5.942236 TCTGAGCTTGCTCTCATTTTGTTAT 59.058 36.000 21.17 0.00 41.73 1.89
4159 5991 7.086376 TGAGCTTGCTCTCATTTTGTTATTTC 58.914 34.615 21.17 0.00 38.11 2.17
4160 5992 6.088824 AGCTTGCTCTCATTTTGTTATTTCG 58.911 36.000 0.00 0.00 0.00 3.46
4161 5993 5.858581 GCTTGCTCTCATTTTGTTATTTCGT 59.141 36.000 0.00 0.00 0.00 3.85
4162 5994 6.183359 GCTTGCTCTCATTTTGTTATTTCGTG 60.183 38.462 0.00 0.00 0.00 4.35
4163 5995 6.312399 TGCTCTCATTTTGTTATTTCGTGT 57.688 33.333 0.00 0.00 0.00 4.49
4164 5996 6.370593 TGCTCTCATTTTGTTATTTCGTGTC 58.629 36.000 0.00 0.00 0.00 3.67
4165 5997 6.017523 TGCTCTCATTTTGTTATTTCGTGTCA 60.018 34.615 0.00 0.00 0.00 3.58
4166 5998 6.855914 GCTCTCATTTTGTTATTTCGTGTCAA 59.144 34.615 0.00 0.00 0.00 3.18
4167 5999 7.059945 GCTCTCATTTTGTTATTTCGTGTCAAG 59.940 37.037 0.00 0.00 0.00 3.02
4179 6014 2.228103 TCGTGTCAAGTATCGAGTTGCT 59.772 45.455 0.00 0.00 36.15 3.91
4221 6056 6.154877 ACATCCATGCCACTAAATTTTGATGA 59.845 34.615 6.63 0.00 32.39 2.92
4286 6121 6.437477 TGAACAGACTAGAAGATAAGGAGCAA 59.563 38.462 0.00 0.00 0.00 3.91
4307 6142 4.509915 AAAGTCGTACAACTTCAACACG 57.490 40.909 0.00 0.00 38.52 4.49
4313 6148 6.089016 AGTCGTACAACTTCAACACGATAATG 59.911 38.462 0.00 0.00 42.79 1.90
4321 6156 8.450964 CAACTTCAACACGATAATGAAAGGTAT 58.549 33.333 0.00 0.00 33.08 2.73
4323 6158 9.661563 ACTTCAACACGATAATGAAAGGTATAA 57.338 29.630 0.00 0.00 33.08 0.98
4340 6180 7.142995 AGGTATAATTTCCTCTTCTCCCTTG 57.857 40.000 0.00 0.00 0.00 3.61
4344 6184 4.516652 ATTTCCTCTTCTCCCTTGATGG 57.483 45.455 0.00 0.00 0.00 3.51
4379 6219 3.982576 AAAAACTGACGGTTGATGGAC 57.017 42.857 0.00 0.00 38.29 4.02
4382 6222 0.321671 ACTGACGGTTGATGGACTGG 59.678 55.000 0.00 0.00 0.00 4.00
4409 6258 9.898152 TGTATGTCAGAATACAAATCCATACAA 57.102 29.630 0.00 0.00 39.95 2.41
4430 6279 5.239525 ACAAGATGCCTACAAAACTTCTGAC 59.760 40.000 0.00 0.00 0.00 3.51
4482 6331 7.095187 GGGTAAGTATTTGGCATTATCGAGAAG 60.095 40.741 0.00 0.00 0.00 2.85
4492 6341 6.813649 TGGCATTATCGAGAAGTAATGATAGC 59.186 38.462 16.85 4.94 39.50 2.97
4512 6361 4.995124 AGCTGTACTGTATTTAGTGTCCG 58.005 43.478 1.46 0.00 32.19 4.79
4572 6421 3.334691 TCTTTTGGATCGCGAGTTGATT 58.665 40.909 16.66 0.00 0.00 2.57
4585 6434 3.585862 GAGTTGATTACCTTCGCTGACA 58.414 45.455 0.00 0.00 0.00 3.58
4587 6436 2.380084 TGATTACCTTCGCTGACACC 57.620 50.000 0.00 0.00 0.00 4.16
4608 6457 2.206576 AAGGGAGAAATGTGGCACTC 57.793 50.000 19.83 8.25 0.00 3.51
4620 6469 1.668151 GGCACTCGAATATCGGCCC 60.668 63.158 0.00 0.00 38.30 5.80
4668 6517 1.466167 CTCGCACAATCCCTCAAGTTG 59.534 52.381 0.00 0.00 0.00 3.16
4691 6540 1.982395 CTACCTGCCCCGTGAGTCA 60.982 63.158 0.00 0.00 0.00 3.41
4694 6543 1.982395 CCTGCCCCGTGAGTCACTA 60.982 63.158 20.64 2.01 31.34 2.74
4708 6557 2.037251 AGTCACTATCCACGTGCAACTT 59.963 45.455 10.91 0.00 32.54 2.66
4744 6611 8.717717 TCTGGTCAATATGAAGAGATTAATGGT 58.282 33.333 0.00 0.00 0.00 3.55
4842 6713 9.186323 CGTGAAAGATATATGTAGAAGTTCCTG 57.814 37.037 0.00 0.00 0.00 3.86
4857 6728 3.701040 AGTTCCTGTGTGTTTGCTGAAAT 59.299 39.130 0.00 0.00 0.00 2.17
4868 6739 0.040157 TGCTGAAATTGTGACGCTGC 60.040 50.000 0.00 0.00 0.00 5.25
4947 6819 3.310774 GCGTAGACTGATGCAACAATGAT 59.689 43.478 0.00 0.00 0.00 2.45
4948 6820 4.551603 GCGTAGACTGATGCAACAATGATC 60.552 45.833 0.00 0.00 0.00 2.92
4950 6822 5.292834 CGTAGACTGATGCAACAATGATCTT 59.707 40.000 0.00 0.00 0.00 2.40
4956 6828 1.067425 TGCAACAATGATCTTGCCAGC 60.067 47.619 13.13 10.44 41.83 4.85
4961 6833 1.098050 AATGATCTTGCCAGCCGTTC 58.902 50.000 0.00 0.00 0.00 3.95
4968 6840 3.660111 GCCAGCCGTTCGCAAGTT 61.660 61.111 0.00 0.00 41.38 2.66
4980 6852 2.066262 TCGCAAGTTTGGTTCTCGATC 58.934 47.619 0.00 0.00 39.48 3.69
4983 6855 3.423645 CGCAAGTTTGGTTCTCGATCTTC 60.424 47.826 0.00 0.00 0.00 2.87
4984 6856 3.748568 GCAAGTTTGGTTCTCGATCTTCT 59.251 43.478 0.00 0.00 0.00 2.85
4985 6857 4.214332 GCAAGTTTGGTTCTCGATCTTCTT 59.786 41.667 0.00 0.00 0.00 2.52
4986 6858 5.278022 GCAAGTTTGGTTCTCGATCTTCTTT 60.278 40.000 0.00 0.00 0.00 2.52
5014 6886 3.883489 CGATCATGTGAGGTAGTAGTGGA 59.117 47.826 0.00 0.00 0.00 4.02
5015 6887 4.261238 CGATCATGTGAGGTAGTAGTGGAC 60.261 50.000 0.00 0.00 0.00 4.02
5016 6888 4.317530 TCATGTGAGGTAGTAGTGGACT 57.682 45.455 0.00 0.00 42.69 3.85
5017 6889 5.446260 TCATGTGAGGTAGTAGTGGACTA 57.554 43.478 0.00 0.00 39.81 2.59
5018 6890 5.437946 TCATGTGAGGTAGTAGTGGACTAG 58.562 45.833 0.00 0.00 41.47 2.57
5019 6891 4.923516 TGTGAGGTAGTAGTGGACTAGT 57.076 45.455 0.00 0.00 41.47 2.57
5020 6892 4.586884 TGTGAGGTAGTAGTGGACTAGTG 58.413 47.826 0.00 0.00 41.47 2.74
5021 6893 3.946558 GTGAGGTAGTAGTGGACTAGTGG 59.053 52.174 0.00 0.00 41.47 4.00
5033 6905 2.419297 GGACTAGTGGGTGCTTCATCAG 60.419 54.545 0.00 0.00 0.00 2.90
5062 6936 4.398988 GCTGATGGGATGTGAACATGTAAA 59.601 41.667 0.00 0.00 36.57 2.01
5149 7023 8.358148 TCGTTTTAGTATCTATCACCTCATTCC 58.642 37.037 0.00 0.00 0.00 3.01
5161 7035 1.283029 CCTCATTCCTGTGGGTCATGT 59.717 52.381 0.00 0.00 33.27 3.21
5163 7037 2.238144 CTCATTCCTGTGGGTCATGTCT 59.762 50.000 0.00 0.00 0.00 3.41
5320 7201 1.433534 CTGGCGAAGAGTCCAAGTTC 58.566 55.000 0.00 0.00 30.98 3.01
5367 7255 1.755395 TACGTGGGTCGATCCAGGG 60.755 63.158 34.01 23.94 44.41 4.45
5404 7292 0.879090 TGCGAAGTCGAGAGCAACTA 59.121 50.000 4.59 0.00 43.02 2.24
5408 7296 3.566523 CGAAGTCGAGAGCAACTAAACT 58.433 45.455 0.00 0.00 43.02 2.66
5520 7425 1.000171 CTTCCTTTCTTTGGTGGCAGC 60.000 52.381 10.30 10.30 0.00 5.25
5554 7459 8.041783 TACCCTACCCGGTACAAAGGTATTTG 62.042 46.154 0.00 0.00 42.97 2.32
5576 7481 2.662006 TCTGTTCTGATTCCAGCTCG 57.338 50.000 0.00 0.00 40.20 5.03
5598 7503 4.067896 GGAAGAAACAGAGAGATTGTGCA 58.932 43.478 0.00 0.00 0.00 4.57
5600 7505 4.348863 AGAAACAGAGAGATTGTGCAGT 57.651 40.909 0.00 0.00 0.00 4.40
5603 7508 3.316071 ACAGAGAGATTGTGCAGTGAG 57.684 47.619 0.00 0.00 0.00 3.51
5604 7509 2.896044 ACAGAGAGATTGTGCAGTGAGA 59.104 45.455 0.00 0.00 0.00 3.27
5605 7510 3.514706 ACAGAGAGATTGTGCAGTGAGAT 59.485 43.478 0.00 0.00 0.00 2.75
5606 7511 3.866327 CAGAGAGATTGTGCAGTGAGATG 59.134 47.826 0.00 0.00 0.00 2.90
5607 7512 3.768215 AGAGAGATTGTGCAGTGAGATGA 59.232 43.478 0.00 0.00 0.00 2.92
5609 7514 4.505808 AGAGATTGTGCAGTGAGATGAAG 58.494 43.478 0.00 0.00 0.00 3.02
5799 7730 4.019312 TACCACCGCCCCCGAAAC 62.019 66.667 0.00 0.00 36.29 2.78
5813 7744 2.357154 CCCGAAACAATTCCCCATCTCT 60.357 50.000 0.00 0.00 31.52 3.10
5818 7749 5.629133 CGAAACAATTCCCCATCTCTCCTTA 60.629 44.000 0.00 0.00 31.52 2.69
5819 7750 6.347061 AAACAATTCCCCATCTCTCCTTAT 57.653 37.500 0.00 0.00 0.00 1.73
5820 7751 5.574970 ACAATTCCCCATCTCTCCTTATC 57.425 43.478 0.00 0.00 0.00 1.75
5821 7752 4.352298 ACAATTCCCCATCTCTCCTTATCC 59.648 45.833 0.00 0.00 0.00 2.59
5822 7753 2.723530 TCCCCATCTCTCCTTATCCC 57.276 55.000 0.00 0.00 0.00 3.85
5823 7754 2.165112 TCCCCATCTCTCCTTATCCCT 58.835 52.381 0.00 0.00 0.00 4.20
5824 7755 2.158097 TCCCCATCTCTCCTTATCCCTG 60.158 54.545 0.00 0.00 0.00 4.45
5825 7756 2.158097 CCCCATCTCTCCTTATCCCTGA 60.158 54.545 0.00 0.00 0.00 3.86
5826 7757 3.172339 CCCATCTCTCCTTATCCCTGAG 58.828 54.545 0.00 0.00 0.00 3.35
5827 7758 3.181413 CCCATCTCTCCTTATCCCTGAGA 60.181 52.174 0.00 0.00 38.03 3.27
5830 7761 2.956132 CTCTCCTTATCCCTGAGAGCA 58.044 52.381 3.11 0.00 43.88 4.26
5831 7762 3.303938 CTCTCCTTATCCCTGAGAGCAA 58.696 50.000 3.11 0.00 43.88 3.91
5832 7763 3.903090 CTCTCCTTATCCCTGAGAGCAAT 59.097 47.826 3.11 0.00 43.88 3.56
5833 7764 5.079998 TCTCCTTATCCCTGAGAGCAATA 57.920 43.478 0.00 0.00 31.75 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.281484 GTTGCCAAGGCCAGTCGA 60.281 61.111 5.01 0.00 41.09 4.20
12 13 2.549064 AAATTCCAAGTTGCCAAGGC 57.451 45.000 3.61 3.61 42.35 4.35
17 18 4.702831 TCTTCCAAAAATTCCAAGTTGCC 58.297 39.130 0.00 0.00 0.00 4.52
32 33 5.538053 TCATACAATTTGTGGCTTCTTCCAA 59.462 36.000 12.30 0.00 37.96 3.53
66 67 2.165641 TCTCCATGTAGGTACTTGCGTG 59.834 50.000 8.10 8.10 41.75 5.34
68 69 3.384668 CATCTCCATGTAGGTACTTGCG 58.615 50.000 0.00 0.00 41.75 4.85
87 88 1.003118 ACATCGTTGGTGTAGGTGCAT 59.997 47.619 0.00 0.00 0.00 3.96
103 104 1.450312 CGGGGAAGCCACTGACATC 60.450 63.158 0.00 0.00 0.00 3.06
104 105 2.671070 CGGGGAAGCCACTGACAT 59.329 61.111 0.00 0.00 0.00 3.06
136 137 4.342665 AGAGCCTATGCAAGTAGTCTTACC 59.657 45.833 0.00 0.00 41.13 2.85
145 146 1.134670 GTCCGAAGAGCCTATGCAAGT 60.135 52.381 0.00 0.00 41.13 3.16
161 166 6.255453 CCATTTGTAATAAAATTGCTGGTCCG 59.745 38.462 0.00 0.00 0.00 4.79
165 170 9.218440 ACTTTCCATTTGTAATAAAATTGCTGG 57.782 29.630 0.00 0.00 0.00 4.85
177 182 9.793259 ATTTGTCTCTCTACTTTCCATTTGTAA 57.207 29.630 0.00 0.00 0.00 2.41
190 195 6.463995 ACTCTCCATCATTTGTCTCTCTAC 57.536 41.667 0.00 0.00 0.00 2.59
191 196 8.595362 TTTACTCTCCATCATTTGTCTCTCTA 57.405 34.615 0.00 0.00 0.00 2.43
233 238 6.493978 TCCGTTTATATGTCATCGTCGTTAA 58.506 36.000 0.00 0.00 0.00 2.01
234 239 6.058827 TCCGTTTATATGTCATCGTCGTTA 57.941 37.500 0.00 0.00 0.00 3.18
235 240 4.923893 TCCGTTTATATGTCATCGTCGTT 58.076 39.130 0.00 0.00 0.00 3.85
236 241 4.556942 TCCGTTTATATGTCATCGTCGT 57.443 40.909 0.00 0.00 0.00 4.34
237 242 5.457799 ACTTTCCGTTTATATGTCATCGTCG 59.542 40.000 0.00 0.00 0.00 5.12
238 243 6.474427 TCACTTTCCGTTTATATGTCATCGTC 59.526 38.462 0.00 0.00 0.00 4.20
239 244 6.334989 TCACTTTCCGTTTATATGTCATCGT 58.665 36.000 0.00 0.00 0.00 3.73
240 245 6.822073 TCACTTTCCGTTTATATGTCATCG 57.178 37.500 0.00 0.00 0.00 3.84
253 258 5.390613 CGCAAAAGAAATATCACTTTCCGT 58.609 37.500 7.29 0.00 36.06 4.69
257 262 4.770010 TCCCCGCAAAAGAAATATCACTTT 59.230 37.500 0.00 0.00 37.85 2.66
260 265 4.712122 TTCCCCGCAAAAGAAATATCAC 57.288 40.909 0.00 0.00 0.00 3.06
269 274 3.243267 CCCGTTTATATTCCCCGCAAAAG 60.243 47.826 0.00 0.00 0.00 2.27
270 275 2.688958 CCCGTTTATATTCCCCGCAAAA 59.311 45.455 0.00 0.00 0.00 2.44
271 276 2.092538 TCCCGTTTATATTCCCCGCAAA 60.093 45.455 0.00 0.00 0.00 3.68
423 430 2.226437 CGTTCATCCAGTTTTCAGTGGG 59.774 50.000 0.00 0.00 43.23 4.61
424 431 2.350772 GCGTTCATCCAGTTTTCAGTGG 60.351 50.000 0.00 0.00 44.31 4.00
430 437 1.156736 CGGAGCGTTCATCCAGTTTT 58.843 50.000 0.53 0.00 36.57 2.43
479 486 3.904136 ATAGTTGAGCAAACACACAGC 57.096 42.857 5.25 0.00 41.61 4.40
485 493 3.563808 AGCGTCAAATAGTTGAGCAAACA 59.436 39.130 21.03 0.00 44.44 2.83
490 1837 2.281762 CCGTAGCGTCAAATAGTTGAGC 59.718 50.000 5.73 11.66 44.44 4.26
508 1855 3.650950 AGAATGGGCCTGCACCGT 61.651 61.111 4.53 0.00 0.00 4.83
529 1876 2.271497 CCTCTGCCTCAGCCTTGG 59.729 66.667 0.00 0.00 38.69 3.61
553 1900 1.005924 CCCTGGCTTGGATTAGTGGTT 59.994 52.381 0.00 0.00 0.00 3.67
625 1981 4.168291 GAAGCAGCCGAGGAGGGG 62.168 72.222 0.00 0.00 41.48 4.79
626 1982 4.168291 GGAAGCAGCCGAGGAGGG 62.168 72.222 0.00 0.00 41.48 4.30
831 2195 2.755103 CCAACCAAATAGTCCTGCTTCC 59.245 50.000 0.00 0.00 0.00 3.46
832 2196 3.440522 GTCCAACCAAATAGTCCTGCTTC 59.559 47.826 0.00 0.00 0.00 3.86
833 2197 3.181434 TGTCCAACCAAATAGTCCTGCTT 60.181 43.478 0.00 0.00 0.00 3.91
834 2198 2.375174 TGTCCAACCAAATAGTCCTGCT 59.625 45.455 0.00 0.00 0.00 4.24
835 2199 2.790433 TGTCCAACCAAATAGTCCTGC 58.210 47.619 0.00 0.00 0.00 4.85
836 2200 5.982890 AAATGTCCAACCAAATAGTCCTG 57.017 39.130 0.00 0.00 0.00 3.86
837 2201 5.838521 ACAAAATGTCCAACCAAATAGTCCT 59.161 36.000 0.00 0.00 0.00 3.85
838 2202 6.096673 ACAAAATGTCCAACCAAATAGTCC 57.903 37.500 0.00 0.00 0.00 3.85
880 2244 6.465321 GGGAACCGATGGGAGAAAATATCTTA 60.465 42.308 0.00 0.00 40.86 2.10
885 2259 3.570912 GGGAACCGATGGGAGAAAATA 57.429 47.619 0.00 0.00 40.86 1.40
934 2310 6.373186 ACCTCGGTGAAAAACTAGAAAAAG 57.627 37.500 0.00 0.00 0.00 2.27
1192 2593 2.579574 GCTTGCTGCGCAACACAAC 61.580 57.895 14.04 1.97 43.99 3.32
1397 2798 2.693074 GCCTCCCAACTGAGAACAAAAA 59.307 45.455 0.00 0.00 34.11 1.94
1526 2927 2.076863 GATGCAACTAAAGCACGAGGT 58.923 47.619 0.00 0.00 45.95 3.85
1530 2931 2.480037 TGTGAGATGCAACTAAAGCACG 59.520 45.455 0.00 0.00 45.95 5.34
1531 2932 4.488126 TTGTGAGATGCAACTAAAGCAC 57.512 40.909 0.00 1.54 45.95 4.40
1592 3019 3.817709 ATAGAAAGAGAGAGCAGTGGC 57.182 47.619 0.00 0.00 41.61 5.01
1653 3080 8.757982 AACATAATTATCAACCTGAAGAGCAT 57.242 30.769 0.00 0.00 0.00 3.79
1744 3171 4.954875 AGCTTTGATATAGTCAGTGGAGC 58.045 43.478 0.00 0.00 38.29 4.70
1745 3172 5.218885 CGAGCTTTGATATAGTCAGTGGAG 58.781 45.833 0.00 0.00 38.29 3.86
1749 3176 4.927978 AGCGAGCTTTGATATAGTCAGT 57.072 40.909 0.00 0.00 38.29 3.41
1754 3181 5.755375 TGGAAGAAAGCGAGCTTTGATATAG 59.245 40.000 25.37 0.00 45.16 1.31
1785 3212 1.230324 GAGTTGAGAAGGTGCCACAC 58.770 55.000 0.00 0.00 0.00 3.82
1807 3234 8.589338 ACAGAGTCAAGTAAATCAGTAACAGAT 58.411 33.333 0.00 0.00 0.00 2.90
1818 3245 7.653713 CAGTCACAAGTACAGAGTCAAGTAAAT 59.346 37.037 0.00 0.00 0.00 1.40
1841 3268 1.267121 ATGGGAGCGACTAACACAGT 58.733 50.000 0.00 0.00 41.47 3.55
1842 3269 2.386661 AATGGGAGCGACTAACACAG 57.613 50.000 0.00 0.00 0.00 3.66
1844 3271 2.608090 GCTTAATGGGAGCGACTAACAC 59.392 50.000 0.00 0.00 0.00 3.32
1845 3272 2.419574 GGCTTAATGGGAGCGACTAACA 60.420 50.000 0.00 0.00 41.03 2.41
1846 3273 2.210961 GGCTTAATGGGAGCGACTAAC 58.789 52.381 0.00 0.00 41.03 2.34
1847 3274 1.834896 TGGCTTAATGGGAGCGACTAA 59.165 47.619 0.00 0.00 41.03 2.24
1849 3276 0.839946 ATGGCTTAATGGGAGCGACT 59.160 50.000 0.00 0.00 41.03 4.18
1850 3277 0.947244 CATGGCTTAATGGGAGCGAC 59.053 55.000 0.00 0.00 41.03 5.19
1856 3284 5.733620 AAATATCAGCATGGCTTAATGGG 57.266 39.130 0.00 0.00 36.40 4.00
1862 3290 4.748277 AGCAAAAATATCAGCATGGCTT 57.252 36.364 0.00 0.00 36.40 4.35
1885 3313 6.317391 CCTGGCAATTTCCTTAAAACACAAAA 59.683 34.615 0.00 0.00 0.00 2.44
1896 3324 0.543646 AGCTGCCTGGCAATTTCCTT 60.544 50.000 23.51 0.37 38.41 3.36
1994 3422 1.274728 CCCATTTGGAATGGCAAACGA 59.725 47.619 13.05 0.00 37.85 3.85
1995 3423 1.724429 CCCATTTGGAATGGCAAACG 58.276 50.000 13.05 0.00 37.85 3.60
1996 3424 1.003464 AGCCCATTTGGAATGGCAAAC 59.997 47.619 13.05 3.97 46.45 2.93
1998 3426 0.614294 CAGCCCATTTGGAATGGCAA 59.386 50.000 13.05 0.00 46.45 4.52
2006 3434 2.025887 AGTCTACCTTCAGCCCATTTGG 60.026 50.000 0.00 0.00 37.09 3.28
2026 3454 8.785329 AGAAGCCTAAATAAGAAGACTTTCAG 57.215 34.615 0.00 0.00 37.53 3.02
2054 3482 5.885230 TCATGAATTCAGTGTTGTCATCC 57.115 39.130 14.54 0.00 0.00 3.51
2106 3534 5.641709 TCATACTGAGAAGTGTTCGTGATC 58.358 41.667 0.00 0.00 34.02 2.92
2109 3537 5.753713 CTTCATACTGAGAAGTGTTCGTG 57.246 43.478 0.00 0.00 38.11 4.35
2128 3556 9.660180 AGAAACTGAAATAAGGAGTATCACTTC 57.340 33.333 0.00 0.00 36.25 3.01
2168 3596 9.727627 CAGAAGAGAAAAATATAAATGAGCACC 57.272 33.333 0.00 0.00 0.00 5.01
2298 3733 4.569865 GGACAGGGATTGGGAGTTAAATGT 60.570 45.833 0.00 0.00 0.00 2.71
2351 3786 5.591099 ACTCATGAAACAAATTGGTGTGAC 58.409 37.500 0.00 0.00 0.00 3.67
2358 3793 9.467258 ACATTAGACAACTCATGAAACAAATTG 57.533 29.630 0.00 0.00 33.49 2.32
2362 3797 9.944663 GTTTACATTAGACAACTCATGAAACAA 57.055 29.630 0.00 0.00 33.85 2.83
2366 3801 9.554395 TTCTGTTTACATTAGACAACTCATGAA 57.446 29.630 0.00 0.00 33.49 2.57
2395 3831 7.445402 AGTGTTACTTGAAAGCATGTTATGACT 59.555 33.333 0.00 0.00 34.61 3.41
2413 3849 7.663905 TCATGTAAAAATGCCAGTAGTGTTACT 59.336 33.333 0.00 0.00 40.79 2.24
2417 3853 6.237901 TCTCATGTAAAAATGCCAGTAGTGT 58.762 36.000 0.00 0.00 0.00 3.55
2419 3855 5.882557 CCTCTCATGTAAAAATGCCAGTAGT 59.117 40.000 0.00 0.00 0.00 2.73
2444 3880 6.124340 ACAGAACATCATGAATATCAGCCAA 58.876 36.000 0.00 0.00 0.00 4.52
2453 3889 5.044919 TCCCCTGTAACAGAACATCATGAAT 60.045 40.000 0.00 0.00 32.44 2.57
2467 3903 1.745489 CCGCTGCTTCCCCTGTAAC 60.745 63.158 0.00 0.00 0.00 2.50
2491 3927 6.940831 TGCATTGCATCAAGTAAGCTATAA 57.059 33.333 7.38 0.00 31.71 0.98
2546 3982 3.605634 CCCATACCAATCGACAACTCAA 58.394 45.455 0.00 0.00 0.00 3.02
2554 3990 0.756294 ATGTCGCCCATACCAATCGA 59.244 50.000 0.00 0.00 29.82 3.59
2567 4003 4.582459 GACTAAAGCATGAGAAATGTCGC 58.418 43.478 0.00 0.00 0.00 5.19
2569 4005 4.093408 TGCGACTAAAGCATGAGAAATGTC 59.907 41.667 0.00 0.00 40.01 3.06
2570 4006 4.002982 TGCGACTAAAGCATGAGAAATGT 58.997 39.130 0.00 0.00 40.01 2.71
2571 4007 4.604843 TGCGACTAAAGCATGAGAAATG 57.395 40.909 0.00 0.00 40.01 2.32
2597 4034 2.435805 ACTTCTCTGACTTGCTTGGTGA 59.564 45.455 0.00 0.00 0.00 4.02
2611 4048 8.644374 ACTCAACTCACTAGAAATACTTCTCT 57.356 34.615 0.00 0.00 41.19 3.10
2625 4062 6.821388 AGAACACATAAGAACTCAACTCACT 58.179 36.000 0.00 0.00 0.00 3.41
2626 4063 7.011482 ACAAGAACACATAAGAACTCAACTCAC 59.989 37.037 0.00 0.00 0.00 3.51
2632 4069 7.152645 GTCCTACAAGAACACATAAGAACTCA 58.847 38.462 0.00 0.00 0.00 3.41
2635 4072 5.163982 GCGTCCTACAAGAACACATAAGAAC 60.164 44.000 0.00 0.00 0.00 3.01
2645 4413 3.232213 TGATCTGCGTCCTACAAGAAC 57.768 47.619 0.00 0.00 0.00 3.01
2702 4470 4.926140 AGGAACAAAAAGAAGCTTCCTG 57.074 40.909 22.81 16.32 39.44 3.86
2758 4526 8.567285 TTGAAGAAGAGAAAAACTGAGAAAGT 57.433 30.769 0.00 0.00 42.60 2.66
2780 4548 9.788889 AGATCAATAATGCATCTTATCACTTGA 57.211 29.630 0.00 0.00 0.00 3.02
2788 4556 9.631452 CGAGAACTAGATCAATAATGCATCTTA 57.369 33.333 0.00 0.00 30.87 2.10
2789 4557 8.147058 ACGAGAACTAGATCAATAATGCATCTT 58.853 33.333 0.00 0.00 30.87 2.40
2790 4558 7.665690 ACGAGAACTAGATCAATAATGCATCT 58.334 34.615 0.00 0.00 32.16 2.90
2791 4559 7.812191 AGACGAGAACTAGATCAATAATGCATC 59.188 37.037 0.00 0.00 0.00 3.91
2823 4591 8.904834 TGTAGCATTTCAACTGTTAAAAGGTAA 58.095 29.630 3.13 0.00 0.00 2.85
2824 4592 8.453238 TGTAGCATTTCAACTGTTAAAAGGTA 57.547 30.769 3.13 4.87 0.00 3.08
2841 4609 7.322664 CAAATGTTCCATTAACCTGTAGCATT 58.677 34.615 0.00 0.00 37.27 3.56
2842 4610 6.627953 GCAAATGTTCCATTAACCTGTAGCAT 60.628 38.462 0.00 0.00 37.27 3.79
2864 4632 7.039313 TCGAGTCTTTATCTAGCATTAGCAA 57.961 36.000 0.00 0.00 45.49 3.91
2878 4646 4.859304 TGTTGGTAAGCTCGAGTCTTTA 57.141 40.909 21.54 12.60 0.00 1.85
2883 4651 3.470645 AGTTTGTTGGTAAGCTCGAGT 57.529 42.857 15.13 0.00 0.00 4.18
2905 4673 3.998341 GCCTTGAATTGTACTCCGTAACA 59.002 43.478 0.00 0.00 0.00 2.41
2925 4693 4.216411 TGTGGAAAGGATACAGTAAGCC 57.784 45.455 0.00 0.00 41.41 4.35
2943 4711 4.566545 TGCAGTGAAAGGTTACATTGTG 57.433 40.909 0.00 0.00 0.00 3.33
2971 4739 4.510167 AGGTAGGTTCTGCAAGCATAAT 57.490 40.909 0.00 0.00 31.93 1.28
2972 4740 5.630415 ATAGGTAGGTTCTGCAAGCATAA 57.370 39.130 0.00 0.00 31.93 1.90
2973 4741 5.368145 CAATAGGTAGGTTCTGCAAGCATA 58.632 41.667 0.00 0.00 31.93 3.14
2975 4743 3.609853 CAATAGGTAGGTTCTGCAAGCA 58.390 45.455 0.00 0.00 31.93 3.91
2976 4744 2.945668 CCAATAGGTAGGTTCTGCAAGC 59.054 50.000 0.00 0.00 0.00 4.01
2990 4758 8.658609 CAAACATTAAAAGCAATGACCAATAGG 58.341 33.333 3.01 0.00 38.01 2.57
2991 4759 9.206870 ACAAACATTAAAAGCAATGACCAATAG 57.793 29.630 3.01 0.00 38.01 1.73
3019 4787 8.596781 AGTTGAGTACTACCAAGTAAGATGAT 57.403 34.615 0.00 0.00 39.90 2.45
3098 4919 4.420552 AGAGAGAAGATACCATAGGTCCCA 59.579 45.833 0.00 0.00 37.09 4.37
3268 5093 1.440708 TCCGTGAGAGAGTCGAGAAC 58.559 55.000 0.00 0.00 0.00 3.01
3291 5116 1.308783 TGTTGCTGGTTGTTGCGTCA 61.309 50.000 0.00 0.00 0.00 4.35
3294 5119 0.664166 GGATGTTGCTGGTTGTTGCG 60.664 55.000 0.00 0.00 0.00 4.85
3330 5155 3.131046 AGGACCAAACAAACTGCTGAAAG 59.869 43.478 0.00 0.00 0.00 2.62
3387 5212 3.429085 CTGCACGATTTCCACATTTAGC 58.571 45.455 0.00 0.00 0.00 3.09
3402 5227 1.301244 ACCACTCTGAAGCTGCACG 60.301 57.895 1.02 0.00 0.00 5.34
3405 5230 0.250038 TGACACCACTCTGAAGCTGC 60.250 55.000 0.00 0.00 0.00 5.25
3433 5258 6.461092 CCATTGACAGAAATCCAGATTCCATG 60.461 42.308 0.00 0.00 0.00 3.66
3446 5271 5.335583 CCGTAAAGCATTCCATTGACAGAAA 60.336 40.000 0.00 0.00 0.00 2.52
3470 5295 1.358046 GCATGGAGGAAAGCGCATC 59.642 57.895 11.47 7.52 0.00 3.91
3530 5355 4.718961 AGTGCAGTAAATTCAGGTCAAGT 58.281 39.130 0.00 0.00 0.00 3.16
3531 5356 5.695851 AAGTGCAGTAAATTCAGGTCAAG 57.304 39.130 0.00 0.00 0.00 3.02
3535 5360 6.115448 AGTCTAAGTGCAGTAAATTCAGGT 57.885 37.500 0.00 0.00 0.00 4.00
3539 5364 6.814146 AGTGCTAGTCTAAGTGCAGTAAATTC 59.186 38.462 0.00 0.00 37.33 2.17
3549 5374 4.993029 AGGCTTAGTGCTAGTCTAAGTG 57.007 45.455 23.98 11.63 43.39 3.16
3550 5375 5.595133 CCTTAGGCTTAGTGCTAGTCTAAGT 59.405 44.000 23.98 15.13 43.39 2.24
3551 5376 5.828859 TCCTTAGGCTTAGTGCTAGTCTAAG 59.171 44.000 21.51 21.51 43.94 2.18
3552 5377 5.763355 TCCTTAGGCTTAGTGCTAGTCTAA 58.237 41.667 0.00 0.00 42.39 2.10
3553 5378 5.384145 TCCTTAGGCTTAGTGCTAGTCTA 57.616 43.478 0.00 0.00 42.39 2.59
3554 5379 4.252570 TCCTTAGGCTTAGTGCTAGTCT 57.747 45.455 0.00 0.00 42.39 3.24
3555 5380 4.262249 CCATCCTTAGGCTTAGTGCTAGTC 60.262 50.000 0.00 0.00 42.39 2.59
3556 5381 3.643792 CCATCCTTAGGCTTAGTGCTAGT 59.356 47.826 0.00 0.00 42.39 2.57
3557 5382 3.898123 TCCATCCTTAGGCTTAGTGCTAG 59.102 47.826 0.00 0.00 42.39 3.42
3558 5383 3.898123 CTCCATCCTTAGGCTTAGTGCTA 59.102 47.826 0.00 0.00 42.39 3.49
3559 5384 2.703007 CTCCATCCTTAGGCTTAGTGCT 59.297 50.000 0.00 0.00 42.39 4.40
3560 5385 2.700897 TCTCCATCCTTAGGCTTAGTGC 59.299 50.000 0.00 0.00 41.94 4.40
3561 5386 5.559148 AATCTCCATCCTTAGGCTTAGTG 57.441 43.478 0.00 0.00 0.00 2.74
3562 5387 8.402683 TCTATAATCTCCATCCTTAGGCTTAGT 58.597 37.037 0.00 0.00 0.00 2.24
3563 5388 8.830915 TCTATAATCTCCATCCTTAGGCTTAG 57.169 38.462 0.00 0.00 0.00 2.18
3564 5389 9.615660 TTTCTATAATCTCCATCCTTAGGCTTA 57.384 33.333 0.00 0.00 0.00 3.09
3565 5390 8.511748 TTTCTATAATCTCCATCCTTAGGCTT 57.488 34.615 0.00 0.00 0.00 4.35
3566 5391 8.379331 GTTTTCTATAATCTCCATCCTTAGGCT 58.621 37.037 0.00 0.00 0.00 4.58
3567 5392 8.379331 AGTTTTCTATAATCTCCATCCTTAGGC 58.621 37.037 0.00 0.00 0.00 3.93
3568 5393 9.936759 GAGTTTTCTATAATCTCCATCCTTAGG 57.063 37.037 0.00 0.00 0.00 2.69
3569 5394 9.936759 GGAGTTTTCTATAATCTCCATCCTTAG 57.063 37.037 8.89 0.00 42.72 2.18
3570 5395 9.447279 TGGAGTTTTCTATAATCTCCATCCTTA 57.553 33.333 11.42 0.00 46.20 2.69
3571 5396 8.337118 TGGAGTTTTCTATAATCTCCATCCTT 57.663 34.615 11.42 0.00 46.20 3.36
3572 5397 7.937700 TGGAGTTTTCTATAATCTCCATCCT 57.062 36.000 11.42 0.00 46.20 3.24
3577 5402 9.103861 CTGTCTTTGGAGTTTTCTATAATCTCC 57.896 37.037 0.00 0.00 43.27 3.71
3578 5403 8.608317 GCTGTCTTTGGAGTTTTCTATAATCTC 58.392 37.037 0.00 0.00 0.00 2.75
3579 5404 8.325046 AGCTGTCTTTGGAGTTTTCTATAATCT 58.675 33.333 0.00 0.00 0.00 2.40
3580 5405 8.499403 AGCTGTCTTTGGAGTTTTCTATAATC 57.501 34.615 0.00 0.00 0.00 1.75
3581 5406 8.325046 AGAGCTGTCTTTGGAGTTTTCTATAAT 58.675 33.333 0.00 0.00 0.00 1.28
3582 5407 7.680730 AGAGCTGTCTTTGGAGTTTTCTATAA 58.319 34.615 0.00 0.00 0.00 0.98
3583 5408 7.246171 AGAGCTGTCTTTGGAGTTTTCTATA 57.754 36.000 0.00 0.00 0.00 1.31
3584 5409 6.120507 AGAGCTGTCTTTGGAGTTTTCTAT 57.879 37.500 0.00 0.00 0.00 1.98
3585 5410 5.552870 AGAGCTGTCTTTGGAGTTTTCTA 57.447 39.130 0.00 0.00 0.00 2.10
3586 5411 4.429854 AGAGCTGTCTTTGGAGTTTTCT 57.570 40.909 0.00 0.00 0.00 2.52
3597 5422 9.654663 AAATAATACTTCGTAAAGAGCTGTCTT 57.345 29.630 0.00 0.00 45.56 3.01
3598 5423 9.303537 GAAATAATACTTCGTAAAGAGCTGTCT 57.696 33.333 0.00 0.00 36.30 3.41
3599 5424 9.084164 TGAAATAATACTTCGTAAAGAGCTGTC 57.916 33.333 0.00 0.00 36.30 3.51
3672 5498 9.254133 CAAGATCATAAGACACCACTAATAGTG 57.746 37.037 13.20 13.20 45.53 2.74
3749 5577 0.031917 TACCAACCCCCATCTCGCTA 60.032 55.000 0.00 0.00 0.00 4.26
3750 5578 1.306654 TACCAACCCCCATCTCGCT 60.307 57.895 0.00 0.00 0.00 4.93
3751 5579 1.153229 GTACCAACCCCCATCTCGC 60.153 63.158 0.00 0.00 0.00 5.03
3755 5583 0.107848 CACTCGTACCAACCCCCATC 60.108 60.000 0.00 0.00 0.00 3.51
3769 5597 1.337728 TGTACACAATCCAGCCACTCG 60.338 52.381 0.00 0.00 0.00 4.18
3787 5617 0.837272 CCCCAACATATCCGACCTGT 59.163 55.000 0.00 0.00 0.00 4.00
3788 5618 0.837272 ACCCCAACATATCCGACCTG 59.163 55.000 0.00 0.00 0.00 4.00
3793 5623 3.875134 GTGTTCTAACCCCAACATATCCG 59.125 47.826 0.00 0.00 35.05 4.18
3795 5625 4.638865 GTGGTGTTCTAACCCCAACATATC 59.361 45.833 0.00 0.00 38.18 1.63
3803 5633 2.943036 TTGAGTGGTGTTCTAACCCC 57.057 50.000 0.00 0.00 39.70 4.95
3842 5673 5.656416 TCCGAAGAATGATTAGCCCATTTTT 59.344 36.000 0.00 0.00 34.67 1.94
3850 5681 6.814146 CCCTATTAGTCCGAAGAATGATTAGC 59.186 42.308 0.00 0.00 0.00 3.09
3864 5695 1.068741 CGTCAGTGCCCCTATTAGTCC 59.931 57.143 0.00 0.00 0.00 3.85
3865 5696 1.068741 CCGTCAGTGCCCCTATTAGTC 59.931 57.143 0.00 0.00 0.00 2.59
3870 5701 0.691078 ATCACCGTCAGTGCCCCTAT 60.691 55.000 0.00 0.00 46.81 2.57
3881 5712 5.855045 ACCTTTCCATCTATAATCACCGTC 58.145 41.667 0.00 0.00 0.00 4.79
3925 5757 8.650143 AGTACCATTCCAAACAATAGAACAAT 57.350 30.769 0.00 0.00 0.00 2.71
3931 5763 7.624360 TGCTAAGTACCATTCCAAACAATAG 57.376 36.000 0.00 0.00 0.00 1.73
3934 5766 6.547880 TCTTTGCTAAGTACCATTCCAAACAA 59.452 34.615 7.77 0.00 32.98 2.83
3981 5813 5.246883 CCACTCCCAGAAAAAGAAATTGGAT 59.753 40.000 0.00 0.00 0.00 3.41
3996 5828 0.905357 CAGGAAGGTACCACTCCCAG 59.095 60.000 23.13 15.33 0.00 4.45
4011 5843 4.819105 ACAAACGTGGAGAATATCAGGA 57.181 40.909 0.00 0.00 0.00 3.86
4015 5847 5.968387 CACCTACAAACGTGGAGAATATC 57.032 43.478 0.00 0.00 38.04 1.63
4036 5868 4.307032 AGAACTAACCTACGACCTACCA 57.693 45.455 0.00 0.00 0.00 3.25
4037 5869 5.417266 AGAAAGAACTAACCTACGACCTACC 59.583 44.000 0.00 0.00 0.00 3.18
4038 5870 6.507958 AGAAAGAACTAACCTACGACCTAC 57.492 41.667 0.00 0.00 0.00 3.18
4039 5871 7.335422 CACTAGAAAGAACTAACCTACGACCTA 59.665 40.741 0.00 0.00 0.00 3.08
4040 5872 6.150809 CACTAGAAAGAACTAACCTACGACCT 59.849 42.308 0.00 0.00 0.00 3.85
4041 5873 6.150140 TCACTAGAAAGAACTAACCTACGACC 59.850 42.308 0.00 0.00 0.00 4.79
4042 5874 7.138692 TCACTAGAAAGAACTAACCTACGAC 57.861 40.000 0.00 0.00 0.00 4.34
4043 5875 7.934855 ATCACTAGAAAGAACTAACCTACGA 57.065 36.000 0.00 0.00 0.00 3.43
4044 5876 8.983307 AAATCACTAGAAAGAACTAACCTACG 57.017 34.615 0.00 0.00 0.00 3.51
4084 5916 1.259609 TCTTTTGCTGGGAAGCATGG 58.740 50.000 0.55 0.00 44.94 3.66
4152 5984 6.866179 ACTCGATACTTGACACGAAATAAC 57.134 37.500 0.00 0.00 34.50 1.89
4153 5985 6.183360 GCAACTCGATACTTGACACGAAATAA 60.183 38.462 0.00 0.00 34.50 1.40
4155 5987 4.091509 GCAACTCGATACTTGACACGAAAT 59.908 41.667 0.00 0.00 34.50 2.17
4156 5988 3.427528 GCAACTCGATACTTGACACGAAA 59.572 43.478 0.00 0.00 34.50 3.46
4159 5991 2.596452 AGCAACTCGATACTTGACACG 58.404 47.619 0.00 0.00 0.00 4.49
4160 5992 4.482386 TGTAGCAACTCGATACTTGACAC 58.518 43.478 0.00 0.00 37.39 3.67
4161 5993 4.776795 TGTAGCAACTCGATACTTGACA 57.223 40.909 0.00 0.00 37.39 3.58
4162 5994 5.500931 GCATTGTAGCAACTCGATACTTGAC 60.501 44.000 0.00 0.00 37.39 3.18
4163 5995 4.566759 GCATTGTAGCAACTCGATACTTGA 59.433 41.667 0.00 0.00 37.39 3.02
4164 5996 4.329801 TGCATTGTAGCAACTCGATACTTG 59.670 41.667 0.00 0.00 42.46 3.16
4165 5997 4.503910 TGCATTGTAGCAACTCGATACTT 58.496 39.130 0.00 0.00 42.46 2.24
4166 5998 4.123497 TGCATTGTAGCAACTCGATACT 57.877 40.909 0.00 0.00 42.46 2.12
4286 6121 4.175516 TCGTGTTGAAGTTGTACGACTTT 58.824 39.130 25.85 12.44 39.84 2.66
4313 6148 7.807198 AGGGAGAAGAGGAAATTATACCTTTC 58.193 38.462 0.00 0.00 36.57 2.62
4321 6156 5.492524 ACCATCAAGGGAGAAGAGGAAATTA 59.507 40.000 0.00 0.00 43.89 1.40
4323 6158 3.854994 ACCATCAAGGGAGAAGAGGAAAT 59.145 43.478 0.00 0.00 43.89 2.17
4325 6160 2.840651 GACCATCAAGGGAGAAGAGGAA 59.159 50.000 0.00 0.00 43.89 3.36
4327 6162 2.170187 CTGACCATCAAGGGAGAAGAGG 59.830 54.545 0.00 0.00 43.89 3.69
4332 6172 1.274703 GGGCTGACCATCAAGGGAGA 61.275 60.000 0.00 0.00 43.89 3.71
4375 6215 4.775253 TGTATTCTGACATACACCAGTCCA 59.225 41.667 7.92 0.00 35.17 4.02
4376 6216 5.339008 TGTATTCTGACATACACCAGTCC 57.661 43.478 7.92 0.00 35.17 3.85
4378 6218 6.823689 GGATTTGTATTCTGACATACACCAGT 59.176 38.462 10.27 0.00 38.99 4.00
4379 6219 6.823182 TGGATTTGTATTCTGACATACACCAG 59.177 38.462 10.27 0.00 38.99 4.00
4382 6222 9.325198 TGTATGGATTTGTATTCTGACATACAC 57.675 33.333 9.36 3.63 42.32 2.90
4409 6258 4.973168 TGTCAGAAGTTTTGTAGGCATCT 58.027 39.130 0.00 0.00 0.00 2.90
4430 6279 3.052036 GCAAACAGTGGTTGCATACTTG 58.948 45.455 35.27 4.40 37.30 3.16
4492 6341 7.411588 GCTTTTCGGACACTAAATACAGTACAG 60.412 40.741 0.00 0.00 0.00 2.74
4503 6352 3.462483 TGTGAGCTTTTCGGACACTAA 57.538 42.857 0.00 0.00 33.41 2.24
4506 6355 1.400242 GCATGTGAGCTTTTCGGACAC 60.400 52.381 0.00 0.00 0.00 3.67
4572 6421 1.270625 CCTTTGGTGTCAGCGAAGGTA 60.271 52.381 31.10 2.69 46.96 3.08
4581 6430 3.221771 CACATTTCTCCCTTTGGTGTCA 58.778 45.455 0.00 0.00 0.00 3.58
4585 6434 1.133199 TGCCACATTTCTCCCTTTGGT 60.133 47.619 0.00 0.00 0.00 3.67
4587 6436 2.229784 GAGTGCCACATTTCTCCCTTTG 59.770 50.000 0.00 0.00 0.00 2.77
4608 6457 0.580104 GTTTGACGGGCCGATATTCG 59.420 55.000 35.78 3.81 40.07 3.34
4620 6469 5.052040 GCGAGAAGATATCAGAAGTTTGACG 60.052 44.000 5.32 0.00 0.00 4.35
4668 6517 1.375523 CACGGGGCAGGTAGTGTTC 60.376 63.158 0.00 0.00 0.00 3.18
4712 6561 9.745018 AATCTCTTCATATTGACCAGAGAAAAA 57.255 29.630 11.10 0.00 41.20 1.94
4716 6565 9.993454 CATTAATCTCTTCATATTGACCAGAGA 57.007 33.333 9.98 9.98 41.73 3.10
4717 6566 9.217278 CCATTAATCTCTTCATATTGACCAGAG 57.783 37.037 1.47 1.47 34.33 3.35
4718 6567 8.717717 ACCATTAATCTCTTCATATTGACCAGA 58.282 33.333 0.00 0.00 0.00 3.86
4719 6568 8.915057 ACCATTAATCTCTTCATATTGACCAG 57.085 34.615 0.00 0.00 0.00 4.00
4768 6636 3.068448 TGCAAAGCAATCAAGAGAAGCAA 59.932 39.130 0.00 0.00 34.76 3.91
4771 6639 3.834610 CCTGCAAAGCAATCAAGAGAAG 58.165 45.455 0.00 0.00 38.41 2.85
4842 6713 3.240401 CGTCACAATTTCAGCAAACACAC 59.760 43.478 0.00 0.00 0.00 3.82
4857 6728 1.159713 CCACTGAAGCAGCGTCACAA 61.160 55.000 6.97 0.00 34.37 3.33
4868 6739 7.042335 CCATTACTACTTAGGAACCACTGAAG 58.958 42.308 0.00 0.00 0.00 3.02
4947 6819 4.617520 TGCGAACGGCTGGCAAGA 62.618 61.111 1.08 0.00 44.05 3.02
4948 6820 3.659092 TTGCGAACGGCTGGCAAG 61.659 61.111 3.85 0.00 43.03 4.01
4950 6822 4.927782 ACTTGCGAACGGCTGGCA 62.928 61.111 1.08 0.00 44.05 4.92
4956 6828 0.661020 AGAACCAAACTTGCGAACGG 59.339 50.000 0.00 0.00 0.00 4.44
4961 6833 2.069273 AGATCGAGAACCAAACTTGCG 58.931 47.619 0.00 0.00 0.00 4.85
4968 6840 5.147330 TGCTAAAGAAGATCGAGAACCAA 57.853 39.130 0.00 0.00 0.00 3.67
4980 6852 3.867493 TCACATGATCGCTGCTAAAGAAG 59.133 43.478 0.00 0.00 0.00 2.85
4983 6855 2.543012 CCTCACATGATCGCTGCTAAAG 59.457 50.000 0.00 0.00 0.00 1.85
4984 6856 2.093500 ACCTCACATGATCGCTGCTAAA 60.093 45.455 0.00 0.00 0.00 1.85
4985 6857 1.482182 ACCTCACATGATCGCTGCTAA 59.518 47.619 0.00 0.00 0.00 3.09
4986 6858 1.114627 ACCTCACATGATCGCTGCTA 58.885 50.000 0.00 0.00 0.00 3.49
5014 6886 2.260822 ACTGATGAAGCACCCACTAGT 58.739 47.619 0.00 0.00 0.00 2.57
5015 6887 3.005554 CAACTGATGAAGCACCCACTAG 58.994 50.000 0.00 0.00 0.00 2.57
5016 6888 2.875672 GCAACTGATGAAGCACCCACTA 60.876 50.000 0.00 0.00 0.00 2.74
5017 6889 1.901591 CAACTGATGAAGCACCCACT 58.098 50.000 0.00 0.00 0.00 4.00
5018 6890 0.242017 GCAACTGATGAAGCACCCAC 59.758 55.000 0.00 0.00 0.00 4.61
5019 6891 0.111061 AGCAACTGATGAAGCACCCA 59.889 50.000 0.00 0.00 0.00 4.51
5020 6892 0.524862 CAGCAACTGATGAAGCACCC 59.475 55.000 0.00 0.00 32.44 4.61
5021 6893 0.109412 GCAGCAACTGATGAAGCACC 60.109 55.000 0.00 0.00 32.44 5.01
5033 6905 0.454600 CACATCCCATCAGCAGCAAC 59.545 55.000 0.00 0.00 0.00 4.17
5062 6936 1.596603 GGCCAAGTTTGCTGCAATTT 58.403 45.000 16.77 10.93 0.00 1.82
5120 6994 9.751542 ATGAGGTGATAGATACTAAAACGAAAG 57.248 33.333 0.00 0.00 0.00 2.62
5122 6996 9.745880 GAATGAGGTGATAGATACTAAAACGAA 57.254 33.333 0.00 0.00 0.00 3.85
5124 6998 8.361139 AGGAATGAGGTGATAGATACTAAAACG 58.639 37.037 0.00 0.00 0.00 3.60
5125 6999 9.482627 CAGGAATGAGGTGATAGATACTAAAAC 57.517 37.037 0.00 0.00 0.00 2.43
5127 7001 8.642432 CACAGGAATGAGGTGATAGATACTAAA 58.358 37.037 0.00 0.00 34.52 1.85
5130 7004 5.541868 CCACAGGAATGAGGTGATAGATACT 59.458 44.000 0.00 0.00 34.52 2.12
5131 7005 5.279708 CCCACAGGAATGAGGTGATAGATAC 60.280 48.000 0.00 0.00 34.52 2.24
5142 7016 2.238144 AGACATGACCCACAGGAATGAG 59.762 50.000 0.00 0.00 35.77 2.90
5149 7023 5.359194 AATAGGTAAGACATGACCCACAG 57.641 43.478 0.00 0.00 36.27 3.66
5207 7085 4.214545 CACTTTACGGCCAAGTTTGATGTA 59.785 41.667 2.24 0.00 31.83 2.29
5320 7201 4.034258 CTGGCGCAGTGCTGGTTG 62.034 66.667 14.33 0.00 45.43 3.77
5367 7255 3.050275 GCTTGACAGGTGCGGGTC 61.050 66.667 0.00 0.00 34.63 4.46
5404 7292 5.639506 GGATATGACATAGCATGCGTAGTTT 59.360 40.000 13.01 6.57 0.00 2.66
5408 7296 4.799564 TGGATATGACATAGCATGCGTA 57.200 40.909 13.01 5.69 0.00 4.42
5520 7425 0.249322 CGGGTAGGGTAGCACGAATG 60.249 60.000 0.00 0.00 0.00 2.67
5554 7459 3.006247 GAGCTGGAATCAGAACAGAACC 58.994 50.000 0.00 0.00 43.49 3.62
5576 7481 4.067896 TGCACAATCTCTCTGTTTCTTCC 58.932 43.478 0.00 0.00 0.00 3.46
5582 7487 3.323115 TCTCACTGCACAATCTCTCTGTT 59.677 43.478 0.00 0.00 0.00 3.16
5598 7503 3.005554 CGAACCATTGCTTCATCTCACT 58.994 45.455 0.00 0.00 0.00 3.41
5600 7505 2.358957 CCGAACCATTGCTTCATCTCA 58.641 47.619 0.00 0.00 0.00 3.27
5603 7508 1.672881 CTCCCGAACCATTGCTTCATC 59.327 52.381 0.00 0.00 0.00 2.92
5604 7509 1.683011 CCTCCCGAACCATTGCTTCAT 60.683 52.381 0.00 0.00 0.00 2.57
5605 7510 0.322456 CCTCCCGAACCATTGCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
5606 7511 0.035439 TCCTCCCGAACCATTGCTTC 60.035 55.000 0.00 0.00 0.00 3.86
5607 7512 0.035056 CTCCTCCCGAACCATTGCTT 60.035 55.000 0.00 0.00 0.00 3.91
5609 7514 1.452108 CCTCCTCCCGAACCATTGC 60.452 63.158 0.00 0.00 0.00 3.56
5795 7726 4.242336 AGGAGAGATGGGGAATTGTTTC 57.758 45.455 0.00 0.00 0.00 2.78
5799 7730 4.263683 GGGATAAGGAGAGATGGGGAATTG 60.264 50.000 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.