Multiple sequence alignment - TraesCS3D01G263100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G263100 chr3D 100.000 2411 0 0 1 2411 365091767 365094177 0 4453
1 TraesCS3D01G263100 chr3D 93.739 2332 135 9 1 2326 213251670 213253996 0 3487
2 TraesCS3D01G263100 chr3D 92.934 2335 132 16 1 2322 67331712 67334026 0 3367
3 TraesCS3D01G263100 chr3D 94.317 2041 98 11 158 2189 219231355 219233386 0 3110
4 TraesCS3D01G263100 chr2D 93.387 2359 117 23 1 2326 196652299 196649947 0 3456
5 TraesCS3D01G263100 chr5A 93.305 2330 134 12 3 2325 280786636 280788950 0 3419
6 TraesCS3D01G263100 chr4B 92.321 2344 158 16 1 2329 553379467 553377131 0 3312
7 TraesCS3D01G263100 chr4B 91.638 2344 147 16 2 2327 113415666 113413354 0 3197
8 TraesCS3D01G263100 chr3B 91.475 2346 137 26 1 2328 660238627 660236327 0 3166
9 TraesCS3D01G263100 chr1B 90.886 2359 183 13 1 2335 401122960 401120610 0 3136
10 TraesCS3D01G263100 chr1B 92.168 2094 140 15 1 2079 530789349 530787265 0 2937
11 TraesCS3D01G263100 chr4D 94.665 1968 89 10 361 2322 61999531 62001488 0 3038


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G263100 chr3D 365091767 365094177 2410 False 4453 4453 100.000 1 2411 1 chr3D.!!$F4 2410
1 TraesCS3D01G263100 chr3D 213251670 213253996 2326 False 3487 3487 93.739 1 2326 1 chr3D.!!$F2 2325
2 TraesCS3D01G263100 chr3D 67331712 67334026 2314 False 3367 3367 92.934 1 2322 1 chr3D.!!$F1 2321
3 TraesCS3D01G263100 chr3D 219231355 219233386 2031 False 3110 3110 94.317 158 2189 1 chr3D.!!$F3 2031
4 TraesCS3D01G263100 chr2D 196649947 196652299 2352 True 3456 3456 93.387 1 2326 1 chr2D.!!$R1 2325
5 TraesCS3D01G263100 chr5A 280786636 280788950 2314 False 3419 3419 93.305 3 2325 1 chr5A.!!$F1 2322
6 TraesCS3D01G263100 chr4B 553377131 553379467 2336 True 3312 3312 92.321 1 2329 1 chr4B.!!$R2 2328
7 TraesCS3D01G263100 chr4B 113413354 113415666 2312 True 3197 3197 91.638 2 2327 1 chr4B.!!$R1 2325
8 TraesCS3D01G263100 chr3B 660236327 660238627 2300 True 3166 3166 91.475 1 2328 1 chr3B.!!$R1 2327
9 TraesCS3D01G263100 chr1B 401120610 401122960 2350 True 3136 3136 90.886 1 2335 1 chr1B.!!$R1 2334
10 TraesCS3D01G263100 chr1B 530787265 530789349 2084 True 2937 2937 92.168 1 2079 1 chr1B.!!$R2 2078
11 TraesCS3D01G263100 chr4D 61999531 62001488 1957 False 3038 3038 94.665 361 2322 1 chr4D.!!$F1 1961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 973 0.397187 CCATCCTCTCTGCCATCTGG 59.603 60.0 0.0 0.0 38.53 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 2465 0.250901 AGGCGTTGAGTTGCTTGGAT 60.251 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.423446 GATCGTGCCAGCTAGGGG 59.577 66.667 4.65 0.00 38.09 4.79
356 363 4.812476 TCCGCGCCGTTGGATCAG 62.812 66.667 0.00 0.00 0.00 2.90
430 437 2.666190 GTTGTGCTCGGCTGCTCA 60.666 61.111 0.00 1.30 35.11 4.26
502 511 4.329545 GCTCTGGTTGGGCCGTCA 62.330 66.667 0.00 0.00 41.21 4.35
517 530 1.446465 CCGTCAAATTGCGTCGTTTTG 59.554 47.619 8.45 9.65 0.00 2.44
519 532 2.148569 CGTCAAATTGCGTCGTTTTGTC 59.851 45.455 13.36 9.32 33.24 3.18
561 574 1.595109 TGAACGTGCTGGCTCTGTG 60.595 57.895 0.00 0.00 0.00 3.66
660 675 4.203226 GACCAAATTTTGAAGGGCCAAAA 58.797 39.130 6.18 4.30 46.18 2.44
697 712 4.152223 GCAAAATGGCCACAAACTATTCAC 59.848 41.667 8.16 0.00 0.00 3.18
820 839 2.049767 TACACTCCCGATGCTGCGA 61.050 57.895 0.00 0.00 0.00 5.10
954 973 0.397187 CCATCCTCTCTGCCATCTGG 59.603 60.000 0.00 0.00 38.53 3.86
989 1011 2.428890 CGACCACTTCTCCTTCTAGCAT 59.571 50.000 0.00 0.00 0.00 3.79
1041 1063 2.218454 CCACTTCCCACCCACCGTA 61.218 63.158 0.00 0.00 0.00 4.02
1205 1232 0.824595 TTCCGTGTCGAGGAGGTCAA 60.825 55.000 0.00 0.00 39.22 3.18
1219 1246 1.038681 GGTCAACCAAAACGGGGTGT 61.039 55.000 0.00 0.00 46.12 4.16
1400 1427 4.402528 CCCCATCGACAACGCCCA 62.403 66.667 0.00 0.00 39.58 5.36
1447 1474 1.985116 GGAGCGAGGTGGAGAAGGT 60.985 63.158 0.00 0.00 0.00 3.50
1963 2020 2.815647 GAAAGCGGCTCGGTCAGG 60.816 66.667 1.45 0.00 36.27 3.86
1982 2039 2.906939 GCATCGTGGCAGCACACAA 61.907 57.895 12.71 0.00 41.38 3.33
1985 2042 1.100463 ATCGTGGCAGCACACAACAA 61.100 50.000 12.71 0.00 41.38 2.83
2065 2142 0.625316 TTGGGTGATGCATAGCAGGT 59.375 50.000 0.00 0.00 43.65 4.00
2222 2299 0.462789 ACGTCCGTTGTGACCTCTTT 59.537 50.000 0.00 0.00 31.35 2.52
2306 2384 2.315155 AGTAGAGCTAAGGAACCAGGGA 59.685 50.000 0.00 0.00 0.00 4.20
2309 2387 1.840635 GAGCTAAGGAACCAGGGACAT 59.159 52.381 0.00 0.00 0.00 3.06
2341 2419 7.625828 AAAAACCCTATTCTCTTTATGACGG 57.374 36.000 0.00 0.00 0.00 4.79
2342 2420 4.957684 ACCCTATTCTCTTTATGACGGG 57.042 45.455 0.00 0.00 35.32 5.28
2343 2421 4.296056 ACCCTATTCTCTTTATGACGGGT 58.704 43.478 0.00 0.00 37.56 5.28
2344 2422 4.101119 ACCCTATTCTCTTTATGACGGGTG 59.899 45.833 0.00 0.00 40.67 4.61
2345 2423 4.101119 CCCTATTCTCTTTATGACGGGTGT 59.899 45.833 0.00 0.00 0.00 4.16
2346 2424 5.303589 CCCTATTCTCTTTATGACGGGTGTA 59.696 44.000 0.00 0.00 0.00 2.90
2347 2425 6.448006 CCTATTCTCTTTATGACGGGTGTAG 58.552 44.000 0.00 0.00 0.00 2.74
2348 2426 4.730949 TTCTCTTTATGACGGGTGTAGG 57.269 45.455 0.00 0.00 0.00 3.18
2349 2427 3.972133 TCTCTTTATGACGGGTGTAGGA 58.028 45.455 0.00 0.00 0.00 2.94
2350 2428 4.543689 TCTCTTTATGACGGGTGTAGGAT 58.456 43.478 0.00 0.00 0.00 3.24
2351 2429 4.341235 TCTCTTTATGACGGGTGTAGGATG 59.659 45.833 0.00 0.00 0.00 3.51
2352 2430 3.386726 TCTTTATGACGGGTGTAGGATGG 59.613 47.826 0.00 0.00 0.00 3.51
2353 2431 1.045407 TATGACGGGTGTAGGATGGC 58.955 55.000 0.00 0.00 0.00 4.40
2354 2432 0.691078 ATGACGGGTGTAGGATGGCT 60.691 55.000 0.00 0.00 0.00 4.75
2355 2433 1.144057 GACGGGTGTAGGATGGCTG 59.856 63.158 0.00 0.00 0.00 4.85
2356 2434 2.311688 GACGGGTGTAGGATGGCTGG 62.312 65.000 0.00 0.00 0.00 4.85
2357 2435 2.367202 CGGGTGTAGGATGGCTGGT 61.367 63.158 0.00 0.00 0.00 4.00
2358 2436 1.527370 GGGTGTAGGATGGCTGGTC 59.473 63.158 0.00 0.00 0.00 4.02
2359 2437 0.983378 GGGTGTAGGATGGCTGGTCT 60.983 60.000 0.00 0.00 0.00 3.85
2360 2438 1.691482 GGGTGTAGGATGGCTGGTCTA 60.691 57.143 0.00 0.00 0.00 2.59
2361 2439 2.330216 GGTGTAGGATGGCTGGTCTAT 58.670 52.381 0.00 0.00 0.00 1.98
2362 2440 3.507411 GGTGTAGGATGGCTGGTCTATA 58.493 50.000 0.00 0.00 0.00 1.31
2363 2441 4.097418 GGTGTAGGATGGCTGGTCTATAT 58.903 47.826 0.00 0.00 0.00 0.86
2364 2442 5.269991 GGTGTAGGATGGCTGGTCTATATA 58.730 45.833 0.00 0.00 0.00 0.86
2365 2443 5.900123 GGTGTAGGATGGCTGGTCTATATAT 59.100 44.000 0.00 0.00 0.00 0.86
2366 2444 6.384305 GGTGTAGGATGGCTGGTCTATATATT 59.616 42.308 0.00 0.00 0.00 1.28
2367 2445 7.092846 GGTGTAGGATGGCTGGTCTATATATTT 60.093 40.741 0.00 0.00 0.00 1.40
2368 2446 8.322091 GTGTAGGATGGCTGGTCTATATATTTT 58.678 37.037 0.00 0.00 0.00 1.82
2369 2447 8.321353 TGTAGGATGGCTGGTCTATATATTTTG 58.679 37.037 0.00 0.00 0.00 2.44
2370 2448 6.183347 AGGATGGCTGGTCTATATATTTTGC 58.817 40.000 0.00 0.00 0.00 3.68
2371 2449 5.945784 GGATGGCTGGTCTATATATTTTGCA 59.054 40.000 0.00 0.00 0.00 4.08
2372 2450 6.604795 GGATGGCTGGTCTATATATTTTGCAT 59.395 38.462 0.00 0.00 0.00 3.96
2373 2451 6.822667 TGGCTGGTCTATATATTTTGCATG 57.177 37.500 0.00 0.00 0.00 4.06
2374 2452 6.541907 TGGCTGGTCTATATATTTTGCATGA 58.458 36.000 0.00 0.00 0.00 3.07
2375 2453 7.177184 TGGCTGGTCTATATATTTTGCATGAT 58.823 34.615 0.00 0.00 0.00 2.45
2376 2454 7.337689 TGGCTGGTCTATATATTTTGCATGATC 59.662 37.037 0.00 0.00 0.00 2.92
2377 2455 7.201767 GGCTGGTCTATATATTTTGCATGATCC 60.202 40.741 0.00 0.00 0.00 3.36
2378 2456 7.201767 GCTGGTCTATATATTTTGCATGATCCC 60.202 40.741 0.00 0.00 0.00 3.85
2379 2457 7.697946 TGGTCTATATATTTTGCATGATCCCA 58.302 34.615 0.00 0.00 0.00 4.37
2380 2458 7.611467 TGGTCTATATATTTTGCATGATCCCAC 59.389 37.037 0.00 0.00 0.00 4.61
2381 2459 7.611467 GGTCTATATATTTTGCATGATCCCACA 59.389 37.037 0.00 0.00 0.00 4.17
2382 2460 8.454106 GTCTATATATTTTGCATGATCCCACAC 58.546 37.037 0.00 0.00 0.00 3.82
2383 2461 8.385491 TCTATATATTTTGCATGATCCCACACT 58.615 33.333 0.00 0.00 0.00 3.55
2384 2462 7.844493 ATATATTTTGCATGATCCCACACTT 57.156 32.000 0.00 0.00 0.00 3.16
2385 2463 4.895668 ATTTTGCATGATCCCACACTTT 57.104 36.364 0.00 0.00 0.00 2.66
2386 2464 5.999205 ATTTTGCATGATCCCACACTTTA 57.001 34.783 0.00 0.00 0.00 1.85
2387 2465 5.798125 TTTTGCATGATCCCACACTTTAA 57.202 34.783 0.00 0.00 0.00 1.52
2388 2466 5.999205 TTTGCATGATCCCACACTTTAAT 57.001 34.783 0.00 0.00 0.00 1.40
2389 2467 5.581126 TTGCATGATCCCACACTTTAATC 57.419 39.130 0.00 0.00 0.00 1.75
2390 2468 3.953612 TGCATGATCCCACACTTTAATCC 59.046 43.478 0.00 0.00 0.00 3.01
2391 2469 3.953612 GCATGATCCCACACTTTAATCCA 59.046 43.478 0.00 0.00 0.00 3.41
2392 2470 4.402155 GCATGATCCCACACTTTAATCCAA 59.598 41.667 0.00 0.00 0.00 3.53
2393 2471 5.450965 GCATGATCCCACACTTTAATCCAAG 60.451 44.000 0.00 0.00 0.00 3.61
2394 2472 4.016444 TGATCCCACACTTTAATCCAAGC 58.984 43.478 0.00 0.00 0.00 4.01
2395 2473 3.517296 TCCCACACTTTAATCCAAGCA 57.483 42.857 0.00 0.00 0.00 3.91
2396 2474 3.838565 TCCCACACTTTAATCCAAGCAA 58.161 40.909 0.00 0.00 0.00 3.91
2397 2475 3.572255 TCCCACACTTTAATCCAAGCAAC 59.428 43.478 0.00 0.00 0.00 4.17
2398 2476 3.573967 CCCACACTTTAATCCAAGCAACT 59.426 43.478 0.00 0.00 0.00 3.16
2399 2477 4.321230 CCCACACTTTAATCCAAGCAACTC 60.321 45.833 0.00 0.00 0.00 3.01
2400 2478 4.278170 CCACACTTTAATCCAAGCAACTCA 59.722 41.667 0.00 0.00 0.00 3.41
2401 2479 5.221224 CCACACTTTAATCCAAGCAACTCAA 60.221 40.000 0.00 0.00 0.00 3.02
2402 2480 5.687285 CACACTTTAATCCAAGCAACTCAAC 59.313 40.000 0.00 0.00 0.00 3.18
2403 2481 4.911610 CACTTTAATCCAAGCAACTCAACG 59.088 41.667 0.00 0.00 0.00 4.10
2404 2482 3.552604 TTAATCCAAGCAACTCAACGC 57.447 42.857 0.00 0.00 0.00 4.84
2405 2483 0.598065 AATCCAAGCAACTCAACGCC 59.402 50.000 0.00 0.00 0.00 5.68
2406 2484 0.250901 ATCCAAGCAACTCAACGCCT 60.251 50.000 0.00 0.00 0.00 5.52
2407 2485 0.884704 TCCAAGCAACTCAACGCCTC 60.885 55.000 0.00 0.00 0.00 4.70
2408 2486 0.886490 CCAAGCAACTCAACGCCTCT 60.886 55.000 0.00 0.00 0.00 3.69
2409 2487 0.947244 CAAGCAACTCAACGCCTCTT 59.053 50.000 0.00 0.00 0.00 2.85
2410 2488 2.143122 CAAGCAACTCAACGCCTCTTA 58.857 47.619 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.314143 AGGTCAAATGAGCACAATTAATTTTG 57.686 30.769 14.36 9.53 44.42 2.44
18 19 2.621338 GATCGAGGTCAAATGAGCACA 58.379 47.619 14.36 0.00 44.42 4.57
52 53 8.087750 TGGTCTATGGTCATTTTCATGAAAAAC 58.912 33.333 31.39 25.40 41.30 2.43
430 437 2.122989 ACGGAGTCAGTGGTGGGT 60.123 61.111 0.00 0.00 29.74 4.51
502 511 2.116366 GCAGACAAAACGACGCAATTT 58.884 42.857 0.00 0.00 0.00 1.82
540 553 1.595382 AGAGCCAGCACGTTCACAC 60.595 57.895 0.00 0.00 0.00 3.82
567 582 4.922692 GTCAATTGATTTCAAACGATGCCA 59.077 37.500 12.12 0.00 39.55 4.92
568 583 4.922692 TGTCAATTGATTTCAAACGATGCC 59.077 37.500 12.12 0.00 39.55 4.40
616 631 8.028354 TGGTCATTTTGCATTTGTATAGAACAG 58.972 33.333 0.00 0.00 39.87 3.16
660 675 8.623030 GTGGCCATTTTGCATGATAAAAATAAT 58.377 29.630 9.72 0.00 34.92 1.28
820 839 1.890489 GTAGCCCGTTTTCAAACCCAT 59.110 47.619 0.00 0.00 35.51 4.00
989 1011 2.103094 GTGTACTGCATGGCTGAGGATA 59.897 50.000 0.00 0.00 0.00 2.59
1041 1063 2.279408 GGGTAGAGCCTCTCCGGT 59.721 66.667 0.00 0.00 37.43 5.28
1205 1232 3.942601 CCAACACCCCGTTTTGGT 58.057 55.556 2.22 0.00 38.23 3.67
1219 1246 1.228552 GGGCAAGGAGAGCAACCAA 60.229 57.895 0.00 0.00 0.00 3.67
1363 1390 0.391130 TACGGAAGAGTGTGCATGCC 60.391 55.000 16.68 7.25 0.00 4.40
1400 1427 0.684805 CGCCCTTCACTACTCCTCCT 60.685 60.000 0.00 0.00 0.00 3.69
1447 1474 1.551883 GGTTTAGAACCCTAGACGCCA 59.448 52.381 0.00 0.00 46.12 5.69
1484 1523 9.567848 CAATTACAACTTAACATAACATGGACC 57.432 33.333 0.00 0.00 33.60 4.46
1514 1553 3.559069 AGCCCATAACATCTCCAACATG 58.441 45.455 0.00 0.00 0.00 3.21
1800 1856 1.745087 CATCTGCACCCGTTTTGCTAT 59.255 47.619 2.35 0.00 40.86 2.97
1963 2020 4.107051 GTGTGCTGCCACGATGCC 62.107 66.667 0.00 0.00 45.04 4.40
1982 2039 3.425713 CGAGCCTGCATGCGTTGT 61.426 61.111 14.09 0.00 36.02 3.32
2222 2299 1.228429 CCTTGCCCGAAACCCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
2329 2407 4.501571 CCATCCTACACCCGTCATAAAGAG 60.502 50.000 0.00 0.00 0.00 2.85
2335 2413 0.691078 AGCCATCCTACACCCGTCAT 60.691 55.000 0.00 0.00 0.00 3.06
2336 2414 1.305802 AGCCATCCTACACCCGTCA 60.306 57.895 0.00 0.00 0.00 4.35
2337 2415 1.144057 CAGCCATCCTACACCCGTC 59.856 63.158 0.00 0.00 0.00 4.79
2338 2416 2.367202 CCAGCCATCCTACACCCGT 61.367 63.158 0.00 0.00 0.00 5.28
2339 2417 2.311688 GACCAGCCATCCTACACCCG 62.312 65.000 0.00 0.00 0.00 5.28
2340 2418 0.983378 AGACCAGCCATCCTACACCC 60.983 60.000 0.00 0.00 0.00 4.61
2341 2419 1.789523 TAGACCAGCCATCCTACACC 58.210 55.000 0.00 0.00 0.00 4.16
2342 2420 7.425224 AATATATAGACCAGCCATCCTACAC 57.575 40.000 0.00 0.00 0.00 2.90
2343 2421 8.321353 CAAAATATATAGACCAGCCATCCTACA 58.679 37.037 0.00 0.00 0.00 2.74
2344 2422 7.281100 GCAAAATATATAGACCAGCCATCCTAC 59.719 40.741 0.00 0.00 0.00 3.18
2345 2423 7.037658 TGCAAAATATATAGACCAGCCATCCTA 60.038 37.037 0.00 0.00 0.00 2.94
2346 2424 6.183347 GCAAAATATATAGACCAGCCATCCT 58.817 40.000 0.00 0.00 0.00 3.24
2347 2425 5.945784 TGCAAAATATATAGACCAGCCATCC 59.054 40.000 0.00 0.00 0.00 3.51
2348 2426 7.337689 TCATGCAAAATATATAGACCAGCCATC 59.662 37.037 0.00 0.00 0.00 3.51
2349 2427 7.177184 TCATGCAAAATATATAGACCAGCCAT 58.823 34.615 0.00 0.00 0.00 4.40
2350 2428 6.541907 TCATGCAAAATATATAGACCAGCCA 58.458 36.000 0.00 0.00 0.00 4.75
2351 2429 7.201767 GGATCATGCAAAATATATAGACCAGCC 60.202 40.741 0.00 0.00 0.00 4.85
2352 2430 7.201767 GGGATCATGCAAAATATATAGACCAGC 60.202 40.741 0.00 0.00 0.00 4.85
2353 2431 7.830697 TGGGATCATGCAAAATATATAGACCAG 59.169 37.037 0.00 0.00 0.00 4.00
2354 2432 7.611467 GTGGGATCATGCAAAATATATAGACCA 59.389 37.037 0.00 0.00 0.00 4.02
2355 2433 7.611467 TGTGGGATCATGCAAAATATATAGACC 59.389 37.037 0.00 0.00 0.00 3.85
2356 2434 8.454106 GTGTGGGATCATGCAAAATATATAGAC 58.546 37.037 0.00 0.00 0.00 2.59
2357 2435 8.385491 AGTGTGGGATCATGCAAAATATATAGA 58.615 33.333 0.00 0.00 0.00 1.98
2358 2436 8.571461 AGTGTGGGATCATGCAAAATATATAG 57.429 34.615 0.00 0.00 0.00 1.31
2359 2437 8.938801 AAGTGTGGGATCATGCAAAATATATA 57.061 30.769 0.00 0.00 0.00 0.86
2360 2438 7.844493 AAGTGTGGGATCATGCAAAATATAT 57.156 32.000 0.00 0.00 0.00 0.86
2361 2439 7.658525 AAAGTGTGGGATCATGCAAAATATA 57.341 32.000 0.00 0.00 0.00 0.86
2362 2440 6.549433 AAAGTGTGGGATCATGCAAAATAT 57.451 33.333 0.00 0.00 0.00 1.28
2363 2441 5.999205 AAAGTGTGGGATCATGCAAAATA 57.001 34.783 0.00 0.00 0.00 1.40
2364 2442 4.895668 AAAGTGTGGGATCATGCAAAAT 57.104 36.364 0.00 0.00 0.00 1.82
2365 2443 5.798125 TTAAAGTGTGGGATCATGCAAAA 57.202 34.783 0.00 0.00 0.00 2.44
2366 2444 5.105392 GGATTAAAGTGTGGGATCATGCAAA 60.105 40.000 0.00 0.00 0.00 3.68
2367 2445 4.402155 GGATTAAAGTGTGGGATCATGCAA 59.598 41.667 0.00 0.00 0.00 4.08
2368 2446 3.953612 GGATTAAAGTGTGGGATCATGCA 59.046 43.478 0.00 0.00 0.00 3.96
2369 2447 3.953612 TGGATTAAAGTGTGGGATCATGC 59.046 43.478 0.00 0.00 0.00 4.06
2370 2448 5.450965 GCTTGGATTAAAGTGTGGGATCATG 60.451 44.000 0.00 0.00 0.00 3.07
2371 2449 4.646492 GCTTGGATTAAAGTGTGGGATCAT 59.354 41.667 0.00 0.00 0.00 2.45
2372 2450 4.016444 GCTTGGATTAAAGTGTGGGATCA 58.984 43.478 0.00 0.00 0.00 2.92
2373 2451 4.016444 TGCTTGGATTAAAGTGTGGGATC 58.984 43.478 0.00 0.00 0.00 3.36
2374 2452 4.046286 TGCTTGGATTAAAGTGTGGGAT 57.954 40.909 0.00 0.00 0.00 3.85
2375 2453 3.517296 TGCTTGGATTAAAGTGTGGGA 57.483 42.857 0.00 0.00 0.00 4.37
2376 2454 3.573967 AGTTGCTTGGATTAAAGTGTGGG 59.426 43.478 0.00 0.00 0.00 4.61
2377 2455 4.278170 TGAGTTGCTTGGATTAAAGTGTGG 59.722 41.667 0.00 0.00 0.00 4.17
2378 2456 5.437289 TGAGTTGCTTGGATTAAAGTGTG 57.563 39.130 0.00 0.00 0.00 3.82
2379 2457 5.505654 CGTTGAGTTGCTTGGATTAAAGTGT 60.506 40.000 0.00 0.00 0.00 3.55
2380 2458 4.911610 CGTTGAGTTGCTTGGATTAAAGTG 59.088 41.667 0.00 0.00 0.00 3.16
2381 2459 4.556699 GCGTTGAGTTGCTTGGATTAAAGT 60.557 41.667 0.00 0.00 0.00 2.66
2382 2460 3.914364 GCGTTGAGTTGCTTGGATTAAAG 59.086 43.478 0.00 0.00 0.00 1.85
2383 2461 3.305064 GGCGTTGAGTTGCTTGGATTAAA 60.305 43.478 0.00 0.00 0.00 1.52
2384 2462 2.227865 GGCGTTGAGTTGCTTGGATTAA 59.772 45.455 0.00 0.00 0.00 1.40
2385 2463 1.810151 GGCGTTGAGTTGCTTGGATTA 59.190 47.619 0.00 0.00 0.00 1.75
2386 2464 0.598065 GGCGTTGAGTTGCTTGGATT 59.402 50.000 0.00 0.00 0.00 3.01
2387 2465 0.250901 AGGCGTTGAGTTGCTTGGAT 60.251 50.000 0.00 0.00 0.00 3.41
2388 2466 0.884704 GAGGCGTTGAGTTGCTTGGA 60.885 55.000 0.00 0.00 0.00 3.53
2389 2467 0.886490 AGAGGCGTTGAGTTGCTTGG 60.886 55.000 0.00 0.00 0.00 3.61
2390 2468 0.947244 AAGAGGCGTTGAGTTGCTTG 59.053 50.000 0.00 0.00 0.00 4.01
2391 2469 2.543777 TAAGAGGCGTTGAGTTGCTT 57.456 45.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.