Multiple sequence alignment - TraesCS3D01G262700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G262700 chr3D 100.000 2336 0 0 1 2336 364519622 364521957 0.000000e+00 4314.0
1 TraesCS3D01G262700 chr3D 100.000 455 0 0 2797 3251 364522418 364522872 0.000000e+00 841.0
2 TraesCS3D01G262700 chr3B 94.989 1397 50 9 948 2336 474714340 474715724 0.000000e+00 2174.0
3 TraesCS3D01G262700 chr3B 98.598 214 3 0 2999 3212 474716289 474716502 2.370000e-101 379.0
4 TraesCS3D01G262700 chr3B 98.058 103 2 0 2797 2899 474715836 474715938 2.580000e-41 180.0
5 TraesCS3D01G262700 chr3A 94.456 1407 49 10 948 2336 485940862 485942257 0.000000e+00 2139.0
6 TraesCS3D01G262700 chr3A 89.441 322 24 4 1 322 707987527 707987216 6.540000e-107 398.0
7 TraesCS3D01G262700 chr3A 91.729 266 4 4 2999 3251 485942519 485942779 1.430000e-93 353.0
8 TraesCS3D01G262700 chr3A 94.149 188 4 4 2800 2981 485942348 485942534 2.470000e-71 279.0
9 TraesCS3D01G262700 chr6D 98.214 560 10 0 1 560 8001634 8001075 0.000000e+00 979.0
10 TraesCS3D01G262700 chr2D 98.032 559 11 0 1 559 613010384 613009826 0.000000e+00 972.0
11 TraesCS3D01G262700 chr2D 96.875 32 1 0 1785 1816 12874709 12874740 2.000000e-03 54.7
12 TraesCS3D01G262700 chr7D 98.062 516 9 1 1 516 614701214 614701728 0.000000e+00 896.0
13 TraesCS3D01G262700 chr2A 97.959 392 7 1 554 945 224904418 224904808 0.000000e+00 678.0
14 TraesCS3D01G262700 chr2A 90.476 189 10 3 376 557 699976576 699976389 3.240000e-60 243.0
15 TraesCS3D01G262700 chr2A 81.362 279 15 12 2 274 699976820 699976573 3.310000e-45 193.0
16 TraesCS3D01G262700 chr1B 97.722 395 8 1 554 948 582551644 582551251 0.000000e+00 678.0
17 TraesCS3D01G262700 chr1B 97.954 391 7 1 554 944 137570292 137570681 0.000000e+00 676.0
18 TraesCS3D01G262700 chr7A 97.462 394 9 1 554 947 657728162 657727770 0.000000e+00 671.0
19 TraesCS3D01G262700 chr7A 97.686 389 8 1 557 945 45933132 45932745 0.000000e+00 667.0
20 TraesCS3D01G262700 chr1A 97.222 396 9 2 554 948 547924207 547924601 0.000000e+00 669.0
21 TraesCS3D01G262700 chr1A 97.449 392 9 1 554 945 565280650 565281040 0.000000e+00 667.0
22 TraesCS3D01G262700 chr7B 97.449 392 9 1 554 945 744749349 744749739 0.000000e+00 667.0
23 TraesCS3D01G262700 chr5A 97.194 392 10 1 554 945 445433962 445434352 0.000000e+00 662.0
24 TraesCS3D01G262700 chr5A 86.957 92 10 2 463 553 47657422 47657332 5.740000e-18 102.0
25 TraesCS3D01G262700 chr5D 95.963 322 6 3 1 322 400908335 400908021 1.730000e-142 516.0
26 TraesCS3D01G262700 chr5D 95.283 318 8 2 5 322 401031809 401031499 6.260000e-137 497.0
27 TraesCS3D01G262700 chr5D 94.262 244 13 1 321 563 400907990 400907747 3.960000e-99 372.0
28 TraesCS3D01G262700 chr5D 97.015 134 4 0 321 454 401031468 401031335 3.260000e-55 226.0
29 TraesCS3D01G262700 chr5D 93.277 119 7 1 446 563 401011576 401011458 1.200000e-39 174.0
30 TraesCS3D01G262700 chr4A 92.835 321 12 4 2 322 618918644 618918335 3.820000e-124 455.0
31 TraesCS3D01G262700 chr4A 92.340 235 12 3 321 553 618918304 618918074 2.420000e-86 329.0
32 TraesCS3D01G262700 chr4D 87.234 94 10 2 463 555 64192020 64192112 4.440000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G262700 chr3D 364519622 364522872 3250 False 2577.500000 4314 100.000000 1 3251 2 chr3D.!!$F1 3250
1 TraesCS3D01G262700 chr3B 474714340 474716502 2162 False 911.000000 2174 97.215000 948 3212 3 chr3B.!!$F1 2264
2 TraesCS3D01G262700 chr3A 485940862 485942779 1917 False 923.666667 2139 93.444667 948 3251 3 chr3A.!!$F1 2303
3 TraesCS3D01G262700 chr6D 8001075 8001634 559 True 979.000000 979 98.214000 1 560 1 chr6D.!!$R1 559
4 TraesCS3D01G262700 chr2D 613009826 613010384 558 True 972.000000 972 98.032000 1 559 1 chr2D.!!$R1 558
5 TraesCS3D01G262700 chr7D 614701214 614701728 514 False 896.000000 896 98.062000 1 516 1 chr7D.!!$F1 515
6 TraesCS3D01G262700 chr5D 400907747 400908335 588 True 444.000000 516 95.112500 1 563 2 chr5D.!!$R2 562
7 TraesCS3D01G262700 chr4A 618918074 618918644 570 True 392.000000 455 92.587500 2 553 2 chr4A.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 752 0.032678 CGTTCGGAGATAGCTGGCAT 59.967 55.0 0.0 0.0 35.04 4.4 F
1912 1962 0.267960 CCCCATACTACCCCTCACCT 59.732 60.0 0.0 0.0 0.00 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 2212 0.036010 CGTGGGCAGAAGAGAATGGT 60.036 55.0 0.0 0.0 0.0 3.55 R
3010 3380 0.176219 TATACCCACGGCCTTCAACG 59.824 55.0 0.0 0.0 0.0 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 1.543208 GCATATCCAGGTGATGCCGAA 60.543 52.381 14.26 0.00 43.70 4.30
342 375 4.759693 ACTTCGTAATGCCAAGTTGAATCA 59.240 37.500 3.87 0.00 0.00 2.57
520 555 6.142259 AGATGATTCTATACTACCCGGTCT 57.858 41.667 0.00 0.00 0.00 3.85
569 604 7.401955 AAAATCTCTAATTTTGCAGCTAGCT 57.598 32.000 12.68 12.68 45.94 3.32
570 605 6.616774 AATCTCTAATTTTGCAGCTAGCTC 57.383 37.500 16.15 10.60 45.94 4.09
571 606 5.089970 TCTCTAATTTTGCAGCTAGCTCA 57.910 39.130 16.15 13.21 45.94 4.26
572 607 4.872691 TCTCTAATTTTGCAGCTAGCTCAC 59.127 41.667 16.15 10.93 45.94 3.51
573 608 4.578871 TCTAATTTTGCAGCTAGCTCACA 58.421 39.130 16.15 13.70 45.94 3.58
574 609 3.844577 AATTTTGCAGCTAGCTCACAG 57.155 42.857 16.15 4.66 45.94 3.66
575 610 2.260844 TTTTGCAGCTAGCTCACAGT 57.739 45.000 16.15 0.00 45.94 3.55
576 611 1.800805 TTTGCAGCTAGCTCACAGTC 58.199 50.000 16.15 1.11 45.94 3.51
577 612 0.036952 TTGCAGCTAGCTCACAGTCC 60.037 55.000 16.15 0.00 45.94 3.85
578 613 1.187567 TGCAGCTAGCTCACAGTCCA 61.188 55.000 16.15 0.77 45.94 4.02
579 614 0.177604 GCAGCTAGCTCACAGTCCAT 59.822 55.000 16.15 0.00 41.15 3.41
580 615 1.937278 CAGCTAGCTCACAGTCCATG 58.063 55.000 16.15 0.00 0.00 3.66
581 616 1.479730 CAGCTAGCTCACAGTCCATGA 59.520 52.381 16.15 0.00 0.00 3.07
582 617 2.093816 CAGCTAGCTCACAGTCCATGAA 60.094 50.000 16.15 0.00 0.00 2.57
583 618 2.568956 AGCTAGCTCACAGTCCATGAAA 59.431 45.455 12.68 0.00 0.00 2.69
584 619 2.935201 GCTAGCTCACAGTCCATGAAAG 59.065 50.000 7.70 0.00 0.00 2.62
585 620 1.818642 AGCTCACAGTCCATGAAAGC 58.181 50.000 0.00 0.00 39.04 3.51
586 621 1.072806 AGCTCACAGTCCATGAAAGCA 59.927 47.619 0.00 0.00 40.29 3.91
587 622 1.467734 GCTCACAGTCCATGAAAGCAG 59.532 52.381 0.00 0.00 38.78 4.24
588 623 2.873245 GCTCACAGTCCATGAAAGCAGA 60.873 50.000 0.00 0.00 38.78 4.26
589 624 3.405831 CTCACAGTCCATGAAAGCAGAA 58.594 45.455 0.00 0.00 0.00 3.02
590 625 3.405831 TCACAGTCCATGAAAGCAGAAG 58.594 45.455 0.00 0.00 0.00 2.85
591 626 2.095364 CACAGTCCATGAAAGCAGAAGC 60.095 50.000 0.00 0.00 42.56 3.86
592 627 2.156917 CAGTCCATGAAAGCAGAAGCA 58.843 47.619 0.00 0.00 45.49 3.91
593 628 2.555325 CAGTCCATGAAAGCAGAAGCAA 59.445 45.455 0.00 0.00 45.49 3.91
594 629 3.192844 CAGTCCATGAAAGCAGAAGCAAT 59.807 43.478 0.00 0.00 45.49 3.56
595 630 3.830755 AGTCCATGAAAGCAGAAGCAATT 59.169 39.130 0.00 0.00 45.49 2.32
596 631 4.082354 AGTCCATGAAAGCAGAAGCAATTC 60.082 41.667 0.00 0.00 45.49 2.17
597 632 3.119743 TCCATGAAAGCAGAAGCAATTCG 60.120 43.478 0.00 0.00 45.49 3.34
598 633 3.119743 CCATGAAAGCAGAAGCAATTCGA 60.120 43.478 0.00 0.00 45.49 3.71
599 634 3.818961 TGAAAGCAGAAGCAATTCGAG 57.181 42.857 0.00 0.00 45.49 4.04
600 635 3.402110 TGAAAGCAGAAGCAATTCGAGA 58.598 40.909 0.00 0.00 45.49 4.04
601 636 4.005650 TGAAAGCAGAAGCAATTCGAGAT 58.994 39.130 0.00 0.00 45.49 2.75
602 637 4.142752 TGAAAGCAGAAGCAATTCGAGATG 60.143 41.667 0.00 0.00 45.49 2.90
603 638 2.286872 AGCAGAAGCAATTCGAGATGG 58.713 47.619 2.28 0.00 45.49 3.51
604 639 1.332997 GCAGAAGCAATTCGAGATGGG 59.667 52.381 2.28 0.00 41.58 4.00
605 640 1.945394 CAGAAGCAATTCGAGATGGGG 59.055 52.381 2.28 0.00 0.00 4.96
606 641 1.561542 AGAAGCAATTCGAGATGGGGT 59.438 47.619 2.28 0.00 0.00 4.95
607 642 2.025887 AGAAGCAATTCGAGATGGGGTT 60.026 45.455 2.28 0.00 0.00 4.11
608 643 2.044123 AGCAATTCGAGATGGGGTTC 57.956 50.000 2.28 0.00 0.00 3.62
609 644 0.657840 GCAATTCGAGATGGGGTTCG 59.342 55.000 2.28 0.00 38.13 3.95
610 645 1.742411 GCAATTCGAGATGGGGTTCGA 60.742 52.381 2.28 0.00 43.38 3.71
614 649 0.464036 TCGAGATGGGGTTCGAATGG 59.536 55.000 0.00 0.00 42.27 3.16
615 650 1.160329 CGAGATGGGGTTCGAATGGC 61.160 60.000 0.00 0.00 39.06 4.40
616 651 0.181350 GAGATGGGGTTCGAATGGCT 59.819 55.000 0.00 0.00 0.00 4.75
617 652 1.416401 GAGATGGGGTTCGAATGGCTA 59.584 52.381 0.00 0.00 0.00 3.93
618 653 2.039084 GAGATGGGGTTCGAATGGCTAT 59.961 50.000 0.00 0.00 0.00 2.97
619 654 2.443255 AGATGGGGTTCGAATGGCTATT 59.557 45.455 0.00 0.00 0.00 1.73
620 655 2.051334 TGGGGTTCGAATGGCTATTG 57.949 50.000 0.00 0.00 0.00 1.90
621 656 1.562008 TGGGGTTCGAATGGCTATTGA 59.438 47.619 0.00 0.00 0.00 2.57
622 657 2.222027 GGGGTTCGAATGGCTATTGAG 58.778 52.381 0.00 0.00 0.00 3.02
623 658 2.158813 GGGGTTCGAATGGCTATTGAGA 60.159 50.000 0.00 0.00 0.00 3.27
624 659 3.134458 GGGTTCGAATGGCTATTGAGAG 58.866 50.000 0.00 0.00 0.00 3.20
625 660 3.181465 GGGTTCGAATGGCTATTGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
626 661 4.054671 GGTTCGAATGGCTATTGAGAGAG 58.945 47.826 0.00 0.00 0.00 3.20
627 662 4.054671 GTTCGAATGGCTATTGAGAGAGG 58.945 47.826 0.00 0.00 0.00 3.69
628 663 3.300388 TCGAATGGCTATTGAGAGAGGT 58.700 45.455 0.00 0.00 0.00 3.85
629 664 3.706594 TCGAATGGCTATTGAGAGAGGTT 59.293 43.478 0.00 0.00 0.00 3.50
630 665 4.162320 TCGAATGGCTATTGAGAGAGGTTT 59.838 41.667 0.00 0.00 0.00 3.27
631 666 4.509600 CGAATGGCTATTGAGAGAGGTTTC 59.490 45.833 0.00 0.00 0.00 2.78
632 667 5.431765 GAATGGCTATTGAGAGAGGTTTCA 58.568 41.667 0.00 0.00 0.00 2.69
633 668 4.478206 TGGCTATTGAGAGAGGTTTCAG 57.522 45.455 0.00 0.00 0.00 3.02
634 669 3.202097 GGCTATTGAGAGAGGTTTCAGC 58.798 50.000 0.00 0.00 0.00 4.26
635 670 3.369892 GGCTATTGAGAGAGGTTTCAGCA 60.370 47.826 0.00 0.00 0.00 4.41
636 671 4.256920 GCTATTGAGAGAGGTTTCAGCAA 58.743 43.478 0.00 0.00 0.00 3.91
637 672 4.697352 GCTATTGAGAGAGGTTTCAGCAAA 59.303 41.667 0.00 0.00 0.00 3.68
638 673 5.163774 GCTATTGAGAGAGGTTTCAGCAAAG 60.164 44.000 0.00 0.00 0.00 2.77
639 674 3.845781 TGAGAGAGGTTTCAGCAAAGT 57.154 42.857 0.00 0.00 0.00 2.66
640 675 4.156455 TGAGAGAGGTTTCAGCAAAGTT 57.844 40.909 0.00 0.00 0.00 2.66
641 676 3.879295 TGAGAGAGGTTTCAGCAAAGTTG 59.121 43.478 0.00 0.00 0.00 3.16
642 677 4.130118 GAGAGAGGTTTCAGCAAAGTTGA 58.870 43.478 0.00 0.00 0.00 3.18
643 678 4.133078 AGAGAGGTTTCAGCAAAGTTGAG 58.867 43.478 0.00 0.00 0.00 3.02
644 679 4.130118 GAGAGGTTTCAGCAAAGTTGAGA 58.870 43.478 0.00 0.00 0.00 3.27
645 680 4.723309 AGAGGTTTCAGCAAAGTTGAGAT 58.277 39.130 0.00 0.00 0.00 2.75
646 681 4.518211 AGAGGTTTCAGCAAAGTTGAGATG 59.482 41.667 0.00 0.00 0.00 2.90
647 682 3.571401 AGGTTTCAGCAAAGTTGAGATGG 59.429 43.478 0.00 0.00 0.00 3.51
648 683 3.569701 GGTTTCAGCAAAGTTGAGATGGA 59.430 43.478 0.00 0.00 0.00 3.41
649 684 4.037923 GGTTTCAGCAAAGTTGAGATGGAA 59.962 41.667 0.00 0.00 0.00 3.53
650 685 5.451798 GGTTTCAGCAAAGTTGAGATGGAAA 60.452 40.000 0.00 0.00 0.00 3.13
651 686 4.836125 TCAGCAAAGTTGAGATGGAAAC 57.164 40.909 0.00 0.00 0.00 2.78
652 687 4.464008 TCAGCAAAGTTGAGATGGAAACT 58.536 39.130 0.00 0.00 38.25 2.66
653 688 4.276678 TCAGCAAAGTTGAGATGGAAACTG 59.723 41.667 0.00 0.00 36.75 3.16
654 689 4.276678 CAGCAAAGTTGAGATGGAAACTGA 59.723 41.667 0.00 0.00 36.75 3.41
655 690 5.048224 CAGCAAAGTTGAGATGGAAACTGAT 60.048 40.000 0.00 0.00 36.75 2.90
656 691 5.048224 AGCAAAGTTGAGATGGAAACTGATG 60.048 40.000 0.00 0.00 36.75 3.07
657 692 5.159209 CAAAGTTGAGATGGAAACTGATGC 58.841 41.667 0.00 0.00 36.75 3.91
658 693 4.298103 AGTTGAGATGGAAACTGATGCT 57.702 40.909 0.00 0.00 35.34 3.79
659 694 4.260170 AGTTGAGATGGAAACTGATGCTC 58.740 43.478 0.00 0.00 35.34 4.26
660 695 3.986996 TGAGATGGAAACTGATGCTCA 57.013 42.857 0.00 0.00 0.00 4.26
661 696 4.290711 TGAGATGGAAACTGATGCTCAA 57.709 40.909 0.00 0.00 0.00 3.02
662 697 4.259356 TGAGATGGAAACTGATGCTCAAG 58.741 43.478 0.00 0.00 0.00 3.02
663 698 3.015327 AGATGGAAACTGATGCTCAAGC 58.985 45.455 0.00 0.00 42.50 4.01
664 699 2.574006 TGGAAACTGATGCTCAAGCT 57.426 45.000 3.32 0.00 42.66 3.74
665 700 3.701205 TGGAAACTGATGCTCAAGCTA 57.299 42.857 3.32 0.00 42.66 3.32
666 701 4.226427 TGGAAACTGATGCTCAAGCTAT 57.774 40.909 3.32 0.00 42.66 2.97
667 702 4.592942 TGGAAACTGATGCTCAAGCTATT 58.407 39.130 3.32 0.00 42.66 1.73
668 703 4.397103 TGGAAACTGATGCTCAAGCTATTG 59.603 41.667 3.32 0.00 42.66 1.90
669 704 4.397417 GGAAACTGATGCTCAAGCTATTGT 59.603 41.667 3.32 0.00 42.66 2.71
670 705 5.105997 GGAAACTGATGCTCAAGCTATTGTT 60.106 40.000 3.32 1.77 42.66 2.83
671 706 6.094048 GGAAACTGATGCTCAAGCTATTGTTA 59.906 38.462 3.32 0.00 42.66 2.41
672 707 7.362056 GGAAACTGATGCTCAAGCTATTGTTAA 60.362 37.037 3.32 0.00 42.66 2.01
673 708 7.452880 AACTGATGCTCAAGCTATTGTTAAA 57.547 32.000 3.32 0.00 42.66 1.52
674 709 7.636150 ACTGATGCTCAAGCTATTGTTAAAT 57.364 32.000 3.32 0.00 42.66 1.40
675 710 8.059798 ACTGATGCTCAAGCTATTGTTAAATT 57.940 30.769 3.32 0.00 42.66 1.82
676 711 7.972277 ACTGATGCTCAAGCTATTGTTAAATTG 59.028 33.333 3.32 0.00 42.66 2.32
677 712 7.829725 TGATGCTCAAGCTATTGTTAAATTGT 58.170 30.769 3.32 0.00 42.66 2.71
678 713 7.756272 TGATGCTCAAGCTATTGTTAAATTGTG 59.244 33.333 3.32 0.00 42.66 3.33
679 714 6.389091 TGCTCAAGCTATTGTTAAATTGTGG 58.611 36.000 3.32 0.00 42.66 4.17
680 715 5.807011 GCTCAAGCTATTGTTAAATTGTGGG 59.193 40.000 0.00 0.00 37.68 4.61
681 716 6.350110 GCTCAAGCTATTGTTAAATTGTGGGA 60.350 38.462 0.00 0.00 37.68 4.37
682 717 7.156876 TCAAGCTATTGTTAAATTGTGGGAG 57.843 36.000 0.00 0.00 37.68 4.30
683 718 6.719370 TCAAGCTATTGTTAAATTGTGGGAGT 59.281 34.615 0.00 0.00 37.68 3.85
684 719 6.759497 AGCTATTGTTAAATTGTGGGAGTC 57.241 37.500 0.00 0.00 0.00 3.36
685 720 6.245408 AGCTATTGTTAAATTGTGGGAGTCA 58.755 36.000 0.00 0.00 0.00 3.41
686 721 6.375455 AGCTATTGTTAAATTGTGGGAGTCAG 59.625 38.462 0.00 0.00 0.00 3.51
687 722 6.374333 GCTATTGTTAAATTGTGGGAGTCAGA 59.626 38.462 0.00 0.00 0.00 3.27
688 723 7.067494 GCTATTGTTAAATTGTGGGAGTCAGAT 59.933 37.037 0.00 0.00 0.00 2.90
689 724 9.613428 CTATTGTTAAATTGTGGGAGTCAGATA 57.387 33.333 0.00 0.00 0.00 1.98
690 725 7.681939 TTGTTAAATTGTGGGAGTCAGATAC 57.318 36.000 0.00 0.00 0.00 2.24
691 726 6.177610 TGTTAAATTGTGGGAGTCAGATACC 58.822 40.000 0.00 0.00 0.00 2.73
692 727 6.012858 TGTTAAATTGTGGGAGTCAGATACCT 60.013 38.462 0.00 0.00 0.00 3.08
693 728 5.520748 AAATTGTGGGAGTCAGATACCTT 57.479 39.130 0.00 0.00 0.00 3.50
694 729 4.762289 ATTGTGGGAGTCAGATACCTTC 57.238 45.455 0.00 0.00 0.00 3.46
695 730 2.100197 TGTGGGAGTCAGATACCTTCG 58.900 52.381 0.00 0.00 0.00 3.79
696 731 2.291346 TGTGGGAGTCAGATACCTTCGA 60.291 50.000 0.00 0.00 0.00 3.71
697 732 2.959707 GTGGGAGTCAGATACCTTCGAT 59.040 50.000 0.00 0.00 0.00 3.59
698 733 3.004944 GTGGGAGTCAGATACCTTCGATC 59.995 52.174 0.00 0.00 0.00 3.69
699 734 2.226912 GGGAGTCAGATACCTTCGATCG 59.773 54.545 9.36 9.36 0.00 3.69
700 735 2.879646 GGAGTCAGATACCTTCGATCGT 59.120 50.000 15.94 0.00 0.00 3.73
701 736 3.315749 GGAGTCAGATACCTTCGATCGTT 59.684 47.826 15.94 0.88 0.00 3.85
702 737 4.529446 GAGTCAGATACCTTCGATCGTTC 58.471 47.826 15.94 4.25 0.00 3.95
703 738 3.002451 AGTCAGATACCTTCGATCGTTCG 59.998 47.826 15.94 9.59 46.87 3.95
704 739 2.289820 TCAGATACCTTCGATCGTTCGG 59.710 50.000 15.94 15.42 45.53 4.30
705 740 2.289820 CAGATACCTTCGATCGTTCGGA 59.710 50.000 15.94 6.37 45.53 4.55
711 746 2.682952 TTCGATCGTTCGGAGATAGC 57.317 50.000 15.94 0.00 45.53 2.97
712 747 1.880271 TCGATCGTTCGGAGATAGCT 58.120 50.000 15.94 0.00 45.53 3.32
713 748 1.531578 TCGATCGTTCGGAGATAGCTG 59.468 52.381 15.94 0.00 45.53 4.24
714 749 1.400371 CGATCGTTCGGAGATAGCTGG 60.400 57.143 7.03 0.00 41.74 4.85
715 750 0.315568 ATCGTTCGGAGATAGCTGGC 59.684 55.000 0.00 0.00 35.04 4.85
716 751 1.035385 TCGTTCGGAGATAGCTGGCA 61.035 55.000 0.00 0.00 35.04 4.92
717 752 0.032678 CGTTCGGAGATAGCTGGCAT 59.967 55.000 0.00 0.00 35.04 4.40
718 753 1.539065 CGTTCGGAGATAGCTGGCATT 60.539 52.381 0.00 0.00 35.04 3.56
719 754 2.565841 GTTCGGAGATAGCTGGCATTT 58.434 47.619 0.00 0.00 35.04 2.32
720 755 2.945668 GTTCGGAGATAGCTGGCATTTT 59.054 45.455 0.00 0.00 35.04 1.82
721 756 3.281727 TCGGAGATAGCTGGCATTTTT 57.718 42.857 0.00 0.00 0.00 1.94
739 774 4.647564 TTTTTCAAGAGATCAGGGAGCT 57.352 40.909 0.00 0.00 0.00 4.09
740 775 4.647564 TTTTCAAGAGATCAGGGAGCTT 57.352 40.909 0.00 0.00 0.00 3.74
741 776 4.647564 TTTCAAGAGATCAGGGAGCTTT 57.352 40.909 0.00 0.00 0.00 3.51
742 777 3.902881 TCAAGAGATCAGGGAGCTTTC 57.097 47.619 0.00 0.00 0.00 2.62
743 778 3.448934 TCAAGAGATCAGGGAGCTTTCT 58.551 45.455 0.00 0.00 0.00 2.52
744 779 3.197333 TCAAGAGATCAGGGAGCTTTCTG 59.803 47.826 10.02 10.02 0.00 3.02
745 780 3.113191 AGAGATCAGGGAGCTTTCTGA 57.887 47.619 18.14 18.14 43.15 3.27
750 785 4.792513 ATCAGGGAGCTTTCTGATCAAT 57.207 40.909 20.30 6.24 44.63 2.57
751 786 4.581309 TCAGGGAGCTTTCTGATCAATT 57.419 40.909 13.69 0.00 35.37 2.32
752 787 4.927049 TCAGGGAGCTTTCTGATCAATTT 58.073 39.130 13.69 0.00 35.37 1.82
753 788 4.703575 TCAGGGAGCTTTCTGATCAATTTG 59.296 41.667 13.69 0.00 35.37 2.32
754 789 4.703575 CAGGGAGCTTTCTGATCAATTTGA 59.296 41.667 10.60 0.75 33.11 2.69
755 790 4.948621 AGGGAGCTTTCTGATCAATTTGAG 59.051 41.667 5.21 0.00 31.67 3.02
756 791 4.946157 GGGAGCTTTCTGATCAATTTGAGA 59.054 41.667 5.21 0.00 31.67 3.27
757 792 5.066246 GGGAGCTTTCTGATCAATTTGAGAG 59.934 44.000 5.21 3.94 31.67 3.20
758 793 5.647225 GGAGCTTTCTGATCAATTTGAGAGT 59.353 40.000 5.21 0.00 31.67 3.24
759 794 6.150809 GGAGCTTTCTGATCAATTTGAGAGTT 59.849 38.462 5.21 0.00 31.67 3.01
760 795 7.309073 GGAGCTTTCTGATCAATTTGAGAGTTT 60.309 37.037 5.21 0.00 31.67 2.66
761 796 7.949434 AGCTTTCTGATCAATTTGAGAGTTTT 58.051 30.769 5.21 0.00 0.00 2.43
762 797 9.071276 AGCTTTCTGATCAATTTGAGAGTTTTA 57.929 29.630 5.21 0.00 0.00 1.52
763 798 9.339492 GCTTTCTGATCAATTTGAGAGTTTTAG 57.661 33.333 5.21 0.00 0.00 1.85
764 799 9.837525 CTTTCTGATCAATTTGAGAGTTTTAGG 57.162 33.333 5.21 0.00 0.00 2.69
765 800 7.383102 TCTGATCAATTTGAGAGTTTTAGGC 57.617 36.000 5.21 0.00 0.00 3.93
766 801 7.170965 TCTGATCAATTTGAGAGTTTTAGGCT 58.829 34.615 5.21 0.00 0.00 4.58
767 802 7.120285 TCTGATCAATTTGAGAGTTTTAGGCTG 59.880 37.037 5.21 0.00 0.00 4.85
768 803 6.942005 TGATCAATTTGAGAGTTTTAGGCTGA 59.058 34.615 5.21 0.00 0.00 4.26
769 804 7.448161 TGATCAATTTGAGAGTTTTAGGCTGAA 59.552 33.333 5.21 0.00 0.00 3.02
770 805 7.581213 TCAATTTGAGAGTTTTAGGCTGAAA 57.419 32.000 0.00 0.00 0.00 2.69
771 806 8.181904 TCAATTTGAGAGTTTTAGGCTGAAAT 57.818 30.769 7.76 0.00 0.00 2.17
772 807 8.641541 TCAATTTGAGAGTTTTAGGCTGAAATT 58.358 29.630 7.76 3.52 0.00 1.82
773 808 8.919661 CAATTTGAGAGTTTTAGGCTGAAATTC 58.080 33.333 16.28 16.28 0.00 2.17
774 809 5.862924 TGAGAGTTTTAGGCTGAAATTCG 57.137 39.130 17.44 0.00 30.74 3.34
775 810 5.305585 TGAGAGTTTTAGGCTGAAATTCGT 58.694 37.500 17.44 9.18 30.74 3.85
776 811 6.460781 TGAGAGTTTTAGGCTGAAATTCGTA 58.539 36.000 17.44 10.38 30.74 3.43
777 812 6.367969 TGAGAGTTTTAGGCTGAAATTCGTAC 59.632 38.462 17.44 14.09 30.74 3.67
778 813 5.347907 AGAGTTTTAGGCTGAAATTCGTACG 59.652 40.000 17.44 9.53 30.74 3.67
779 814 4.992951 AGTTTTAGGCTGAAATTCGTACGT 59.007 37.500 16.05 0.00 0.00 3.57
780 815 6.158598 AGTTTTAGGCTGAAATTCGTACGTA 58.841 36.000 16.05 6.02 0.00 3.57
781 816 6.309737 AGTTTTAGGCTGAAATTCGTACGTAG 59.690 38.462 16.05 6.60 0.00 3.51
782 817 5.565592 TTAGGCTGAAATTCGTACGTAGA 57.434 39.130 16.05 3.18 0.00 2.59
783 818 4.030134 AGGCTGAAATTCGTACGTAGAG 57.970 45.455 16.05 5.32 0.00 2.43
784 819 3.693085 AGGCTGAAATTCGTACGTAGAGA 59.307 43.478 16.05 0.00 0.00 3.10
785 820 4.157289 AGGCTGAAATTCGTACGTAGAGAA 59.843 41.667 16.05 13.63 0.00 2.87
786 821 4.499758 GGCTGAAATTCGTACGTAGAGAAG 59.500 45.833 16.05 8.93 0.00 2.85
787 822 4.027540 GCTGAAATTCGTACGTAGAGAAGC 60.028 45.833 16.05 14.55 0.00 3.86
788 823 5.306532 TGAAATTCGTACGTAGAGAAGCT 57.693 39.130 16.05 7.78 0.00 3.74
789 824 6.426980 TGAAATTCGTACGTAGAGAAGCTA 57.573 37.500 16.05 0.00 0.00 3.32
790 825 6.845302 TGAAATTCGTACGTAGAGAAGCTAA 58.155 36.000 16.05 0.00 0.00 3.09
791 826 7.478322 TGAAATTCGTACGTAGAGAAGCTAAT 58.522 34.615 16.05 0.38 0.00 1.73
792 827 7.431376 TGAAATTCGTACGTAGAGAAGCTAATG 59.569 37.037 16.05 0.00 0.00 1.90
793 828 6.615264 ATTCGTACGTAGAGAAGCTAATGA 57.385 37.500 16.05 0.00 0.00 2.57
794 829 6.426980 TTCGTACGTAGAGAAGCTAATGAA 57.573 37.500 16.05 0.00 0.00 2.57
795 830 6.045698 TCGTACGTAGAGAAGCTAATGAAG 57.954 41.667 16.05 0.00 0.00 3.02
807 842 4.756084 GCTAATGAAGCGGCTCATTTAT 57.244 40.909 23.07 9.90 42.16 1.40
808 843 4.470462 GCTAATGAAGCGGCTCATTTATG 58.530 43.478 23.07 17.03 42.16 1.90
809 844 4.023707 GCTAATGAAGCGGCTCATTTATGT 60.024 41.667 23.07 9.39 42.16 2.29
810 845 3.976793 ATGAAGCGGCTCATTTATGTG 57.023 42.857 1.45 0.00 31.84 3.21
811 846 1.401552 TGAAGCGGCTCATTTATGTGC 59.598 47.619 1.45 7.96 44.16 4.57
812 847 0.378257 AAGCGGCTCATTTATGTGCG 59.622 50.000 1.45 7.21 45.40 5.34
813 848 0.461870 AGCGGCTCATTTATGTGCGA 60.462 50.000 0.00 0.00 45.40 5.10
814 849 0.376852 GCGGCTCATTTATGTGCGAA 59.623 50.000 9.78 0.00 45.40 4.70
815 850 1.595489 GCGGCTCATTTATGTGCGAAG 60.595 52.381 9.78 6.13 45.40 3.79
828 863 2.856032 CGAAGCAGGCGACAAGTG 59.144 61.111 0.00 0.00 0.00 3.16
829 864 1.956170 CGAAGCAGGCGACAAGTGT 60.956 57.895 0.00 0.00 0.00 3.55
830 865 1.498865 CGAAGCAGGCGACAAGTGTT 61.499 55.000 0.00 0.00 0.00 3.32
831 866 1.508632 GAAGCAGGCGACAAGTGTTA 58.491 50.000 0.00 0.00 0.00 2.41
832 867 1.461127 GAAGCAGGCGACAAGTGTTAG 59.539 52.381 0.00 0.00 0.00 2.34
833 868 0.320771 AGCAGGCGACAAGTGTTAGG 60.321 55.000 0.00 0.00 0.00 2.69
834 869 0.320421 GCAGGCGACAAGTGTTAGGA 60.320 55.000 0.00 0.00 0.00 2.94
835 870 1.714794 CAGGCGACAAGTGTTAGGAG 58.285 55.000 0.00 0.00 0.00 3.69
836 871 1.272490 CAGGCGACAAGTGTTAGGAGA 59.728 52.381 0.00 0.00 0.00 3.71
837 872 1.968493 AGGCGACAAGTGTTAGGAGAA 59.032 47.619 0.00 0.00 0.00 2.87
838 873 2.028930 AGGCGACAAGTGTTAGGAGAAG 60.029 50.000 0.00 0.00 0.00 2.85
839 874 2.029290 GGCGACAAGTGTTAGGAGAAGA 60.029 50.000 0.00 0.00 0.00 2.87
840 875 3.368531 GGCGACAAGTGTTAGGAGAAGAT 60.369 47.826 0.00 0.00 0.00 2.40
841 876 3.614616 GCGACAAGTGTTAGGAGAAGATG 59.385 47.826 0.00 0.00 0.00 2.90
842 877 4.810790 CGACAAGTGTTAGGAGAAGATGT 58.189 43.478 0.00 0.00 0.00 3.06
843 878 5.230942 CGACAAGTGTTAGGAGAAGATGTT 58.769 41.667 0.00 0.00 0.00 2.71
844 879 5.696724 CGACAAGTGTTAGGAGAAGATGTTT 59.303 40.000 0.00 0.00 0.00 2.83
845 880 6.866770 CGACAAGTGTTAGGAGAAGATGTTTA 59.133 38.462 0.00 0.00 0.00 2.01
846 881 7.545965 CGACAAGTGTTAGGAGAAGATGTTTAT 59.454 37.037 0.00 0.00 0.00 1.40
847 882 8.553459 ACAAGTGTTAGGAGAAGATGTTTATG 57.447 34.615 0.00 0.00 0.00 1.90
848 883 7.607991 ACAAGTGTTAGGAGAAGATGTTTATGG 59.392 37.037 0.00 0.00 0.00 2.74
849 884 6.116126 AGTGTTAGGAGAAGATGTTTATGGC 58.884 40.000 0.00 0.00 0.00 4.40
850 885 6.069963 AGTGTTAGGAGAAGATGTTTATGGCT 60.070 38.462 0.00 0.00 0.00 4.75
851 886 6.599638 GTGTTAGGAGAAGATGTTTATGGCTT 59.400 38.462 0.00 0.00 0.00 4.35
852 887 7.769044 GTGTTAGGAGAAGATGTTTATGGCTTA 59.231 37.037 0.00 0.00 0.00 3.09
853 888 8.325787 TGTTAGGAGAAGATGTTTATGGCTTAA 58.674 33.333 0.00 0.00 0.00 1.85
854 889 9.343539 GTTAGGAGAAGATGTTTATGGCTTAAT 57.656 33.333 0.00 0.00 0.00 1.40
855 890 9.920946 TTAGGAGAAGATGTTTATGGCTTAATT 57.079 29.630 0.00 0.00 0.00 1.40
857 892 9.343539 AGGAGAAGATGTTTATGGCTTAATTAC 57.656 33.333 0.00 0.00 0.00 1.89
858 893 9.120538 GGAGAAGATGTTTATGGCTTAATTACA 57.879 33.333 1.59 1.59 0.00 2.41
859 894 9.937175 GAGAAGATGTTTATGGCTTAATTACAC 57.063 33.333 1.21 0.00 0.00 2.90
860 895 9.686683 AGAAGATGTTTATGGCTTAATTACACT 57.313 29.630 1.21 0.17 0.00 3.55
861 896 9.937175 GAAGATGTTTATGGCTTAATTACACTC 57.063 33.333 1.21 2.07 0.00 3.51
862 897 8.451908 AGATGTTTATGGCTTAATTACACTCC 57.548 34.615 1.21 0.00 0.00 3.85
863 898 8.275040 AGATGTTTATGGCTTAATTACACTCCT 58.725 33.333 1.21 0.00 0.00 3.69
864 899 7.624360 TGTTTATGGCTTAATTACACTCCTG 57.376 36.000 0.00 0.00 0.00 3.86
865 900 7.172342 TGTTTATGGCTTAATTACACTCCTGT 58.828 34.615 0.00 0.00 0.00 4.00
866 901 7.668052 TGTTTATGGCTTAATTACACTCCTGTT 59.332 33.333 0.00 0.00 0.00 3.16
867 902 8.520351 GTTTATGGCTTAATTACACTCCTGTTT 58.480 33.333 0.00 0.00 0.00 2.83
868 903 8.644374 TTATGGCTTAATTACACTCCTGTTTT 57.356 30.769 0.00 0.00 0.00 2.43
869 904 6.569179 TGGCTTAATTACACTCCTGTTTTC 57.431 37.500 0.00 0.00 0.00 2.29
870 905 5.475564 TGGCTTAATTACACTCCTGTTTTCC 59.524 40.000 0.00 0.00 0.00 3.13
871 906 5.710567 GGCTTAATTACACTCCTGTTTTCCT 59.289 40.000 0.00 0.00 0.00 3.36
872 907 6.882678 GGCTTAATTACACTCCTGTTTTCCTA 59.117 38.462 0.00 0.00 0.00 2.94
873 908 7.392393 GGCTTAATTACACTCCTGTTTTCCTAA 59.608 37.037 0.00 0.00 0.00 2.69
874 909 8.957466 GCTTAATTACACTCCTGTTTTCCTAAT 58.043 33.333 0.00 0.00 0.00 1.73
877 912 8.934023 AATTACACTCCTGTTTTCCTAATGAA 57.066 30.769 0.00 0.00 0.00 2.57
878 913 7.739498 TTACACTCCTGTTTTCCTAATGAAC 57.261 36.000 0.00 0.00 31.05 3.18
879 914 5.690865 ACACTCCTGTTTTCCTAATGAACA 58.309 37.500 0.00 0.00 31.05 3.18
880 915 5.531287 ACACTCCTGTTTTCCTAATGAACAC 59.469 40.000 0.00 0.00 34.81 3.32
881 916 4.755123 ACTCCTGTTTTCCTAATGAACACG 59.245 41.667 0.00 0.00 36.61 4.49
882 917 4.710324 TCCTGTTTTCCTAATGAACACGT 58.290 39.130 0.00 0.00 36.61 4.49
883 918 5.127491 TCCTGTTTTCCTAATGAACACGTT 58.873 37.500 0.00 0.00 36.61 3.99
884 919 5.008217 TCCTGTTTTCCTAATGAACACGTTG 59.992 40.000 0.00 0.00 36.61 4.10
885 920 5.220970 CCTGTTTTCCTAATGAACACGTTGT 60.221 40.000 0.00 0.00 36.61 3.32
886 921 6.017770 CCTGTTTTCCTAATGAACACGTTGTA 60.018 38.462 0.00 0.00 36.61 2.41
887 922 7.308348 CCTGTTTTCCTAATGAACACGTTGTAT 60.308 37.037 0.00 0.00 36.61 2.29
888 923 7.577979 TGTTTTCCTAATGAACACGTTGTATC 58.422 34.615 0.00 0.00 36.61 2.24
889 924 7.226918 TGTTTTCCTAATGAACACGTTGTATCA 59.773 33.333 0.00 0.00 36.61 2.15
890 925 7.915293 TTTCCTAATGAACACGTTGTATCAT 57.085 32.000 0.00 0.00 33.10 2.45
891 926 6.902224 TCCTAATGAACACGTTGTATCATG 57.098 37.500 0.00 0.00 32.55 3.07
892 927 6.635755 TCCTAATGAACACGTTGTATCATGA 58.364 36.000 0.00 0.00 32.55 3.07
893 928 6.533723 TCCTAATGAACACGTTGTATCATGAC 59.466 38.462 0.00 0.00 32.55 3.06
894 929 6.535150 CCTAATGAACACGTTGTATCATGACT 59.465 38.462 0.00 0.00 32.55 3.41
895 930 5.784750 ATGAACACGTTGTATCATGACTG 57.215 39.130 0.00 0.00 31.70 3.51
896 931 4.627058 TGAACACGTTGTATCATGACTGT 58.373 39.130 0.00 0.00 0.00 3.55
897 932 5.774630 TGAACACGTTGTATCATGACTGTA 58.225 37.500 0.00 0.00 0.00 2.74
898 933 6.394809 TGAACACGTTGTATCATGACTGTAT 58.605 36.000 0.00 0.00 0.00 2.29
899 934 6.310224 TGAACACGTTGTATCATGACTGTATG 59.690 38.462 0.00 0.00 0.00 2.39
900 935 4.566759 ACACGTTGTATCATGACTGTATGC 59.433 41.667 0.00 0.00 0.00 3.14
901 936 4.025730 CACGTTGTATCATGACTGTATGCC 60.026 45.833 0.00 0.00 0.00 4.40
902 937 4.141937 ACGTTGTATCATGACTGTATGCCT 60.142 41.667 0.00 0.00 0.00 4.75
903 938 4.209911 CGTTGTATCATGACTGTATGCCTG 59.790 45.833 0.00 0.00 0.00 4.85
904 939 3.732212 TGTATCATGACTGTATGCCTGC 58.268 45.455 0.00 0.00 0.00 4.85
905 940 3.389002 TGTATCATGACTGTATGCCTGCT 59.611 43.478 0.00 0.00 0.00 4.24
906 941 3.572632 ATCATGACTGTATGCCTGCTT 57.427 42.857 0.00 0.00 0.00 3.91
907 942 4.694760 ATCATGACTGTATGCCTGCTTA 57.305 40.909 0.00 0.00 0.00 3.09
908 943 4.486125 TCATGACTGTATGCCTGCTTAA 57.514 40.909 0.00 0.00 0.00 1.85
909 944 4.445453 TCATGACTGTATGCCTGCTTAAG 58.555 43.478 0.00 0.00 0.00 1.85
910 945 3.981071 TGACTGTATGCCTGCTTAAGT 57.019 42.857 4.02 0.00 0.00 2.24
911 946 5.128663 TCATGACTGTATGCCTGCTTAAGTA 59.871 40.000 4.02 0.00 0.00 2.24
912 947 5.414789 TGACTGTATGCCTGCTTAAGTAA 57.585 39.130 4.02 0.00 0.00 2.24
913 948 5.419542 TGACTGTATGCCTGCTTAAGTAAG 58.580 41.667 4.02 2.55 36.40 2.34
936 971 8.885494 AAGCAATAAAACTCTTTTATGTTGCA 57.115 26.923 18.75 0.00 44.99 4.08
937 972 8.885494 AGCAATAAAACTCTTTTATGTTGCAA 57.115 26.923 18.75 0.00 44.99 4.08
938 973 9.323985 AGCAATAAAACTCTTTTATGTTGCAAA 57.676 25.926 18.75 0.00 44.99 3.68
939 974 9.928236 GCAATAAAACTCTTTTATGTTGCAAAA 57.072 25.926 0.00 0.00 43.60 2.44
1007 1051 1.000496 CTACCCCTACCTCGCGAATTC 60.000 57.143 11.33 0.00 0.00 2.17
1373 1423 3.535629 CTGCGTGCCTTCCCTGTCA 62.536 63.158 0.00 0.00 0.00 3.58
1808 1858 0.464735 AGGAGATCGAGGAGGACGTG 60.465 60.000 0.00 0.00 0.00 4.49
1912 1962 0.267960 CCCCATACTACCCCTCACCT 59.732 60.000 0.00 0.00 0.00 4.00
1914 1964 1.718280 CCATACTACCCCTCACCTCC 58.282 60.000 0.00 0.00 0.00 4.30
2053 2103 8.088981 AGAAACACTACTACTACCAATTGTCTG 58.911 37.037 4.43 0.00 0.00 3.51
2141 2191 1.586154 CCAGTAAGCAAGCAACCCGG 61.586 60.000 0.00 0.00 0.00 5.73
2162 2212 0.178932 ACCATATCCGGCCAGCTCTA 60.179 55.000 2.24 0.00 0.00 2.43
2209 2270 1.153549 GAGCCGAGATCACCACCAC 60.154 63.158 0.00 0.00 0.00 4.16
2877 2963 3.050275 ACGAGCTGCGCCTTTTCC 61.050 61.111 4.18 0.00 46.04 3.13
2981 3351 1.792949 GTCTGATCTGCGTGTTCGTTT 59.207 47.619 0.00 0.00 39.49 3.60
2982 3352 2.221055 GTCTGATCTGCGTGTTCGTTTT 59.779 45.455 0.00 0.00 39.49 2.43
2983 3353 2.869801 TCTGATCTGCGTGTTCGTTTTT 59.130 40.909 0.00 0.00 39.49 1.94
3005 3375 3.264574 TTTTTGAGGGGGATCTGCG 57.735 52.632 0.00 0.00 0.00 5.18
3006 3376 0.404040 TTTTTGAGGGGGATCTGCGT 59.596 50.000 0.00 0.00 0.00 5.24
3007 3377 0.322456 TTTTGAGGGGGATCTGCGTG 60.322 55.000 0.00 0.00 0.00 5.34
3008 3378 1.488705 TTTGAGGGGGATCTGCGTGT 61.489 55.000 0.00 0.00 0.00 4.49
3009 3379 1.488705 TTGAGGGGGATCTGCGTGTT 61.489 55.000 0.00 0.00 0.00 3.32
3010 3380 1.153349 GAGGGGGATCTGCGTGTTC 60.153 63.158 0.00 0.00 0.00 3.18
3011 3381 2.511600 GGGGGATCTGCGTGTTCG 60.512 66.667 0.00 0.00 40.37 3.95
3012 3382 2.264794 GGGGATCTGCGTGTTCGT 59.735 61.111 0.00 0.00 39.49 3.85
3013 3383 1.375523 GGGGATCTGCGTGTTCGTT 60.376 57.895 0.00 0.00 39.49 3.85
3018 3388 1.126846 GATCTGCGTGTTCGTTGAAGG 59.873 52.381 0.00 0.00 39.49 3.46
3023 3393 1.278637 GTGTTCGTTGAAGGCCGTG 59.721 57.895 0.00 0.00 0.00 4.94
3227 3610 4.446385 CGGTTGTAGATTTTTCACTCGTGA 59.554 41.667 0.00 0.00 37.91 4.35
3245 3628 3.678056 TGACTCCCAACAGTCATGTAC 57.322 47.619 0.00 0.00 46.43 2.90
3246 3629 2.029380 TGACTCCCAACAGTCATGTACG 60.029 50.000 0.00 0.00 46.43 3.67
3247 3630 1.968493 ACTCCCAACAGTCATGTACGT 59.032 47.619 0.00 0.00 39.29 3.57
3249 3632 3.575256 ACTCCCAACAGTCATGTACGTAA 59.425 43.478 0.00 0.00 39.29 3.18
3250 3633 3.916761 TCCCAACAGTCATGTACGTAAC 58.083 45.455 0.00 0.00 39.29 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
245 246 0.984230 CCACTAGTGCCTCTTTCCCA 59.016 55.000 17.86 0.00 0.00 4.37
342 375 0.739813 GTTGGCTCTAATGGCGTCGT 60.740 55.000 0.00 0.00 35.06 4.34
520 555 5.045012 ACGGTACATCATACTACTCCAGA 57.955 43.478 0.00 0.00 0.00 3.86
556 591 2.146342 GACTGTGAGCTAGCTGCAAAA 58.854 47.619 24.99 10.48 45.94 2.44
560 595 0.177604 ATGGACTGTGAGCTAGCTGC 59.822 55.000 24.99 15.19 43.29 5.25
561 596 1.479730 TCATGGACTGTGAGCTAGCTG 59.520 52.381 24.99 10.36 0.00 4.24
562 597 1.857965 TCATGGACTGTGAGCTAGCT 58.142 50.000 19.45 19.45 0.00 3.32
563 598 2.680312 TTCATGGACTGTGAGCTAGC 57.320 50.000 6.62 6.62 0.00 3.42
564 599 2.935201 GCTTTCATGGACTGTGAGCTAG 59.065 50.000 0.00 0.00 33.80 3.42
565 600 2.302733 TGCTTTCATGGACTGTGAGCTA 59.697 45.455 0.00 0.00 35.95 3.32
566 601 1.072806 TGCTTTCATGGACTGTGAGCT 59.927 47.619 0.00 0.00 35.95 4.09
567 602 1.467734 CTGCTTTCATGGACTGTGAGC 59.532 52.381 0.00 0.00 35.70 4.26
568 603 3.049708 TCTGCTTTCATGGACTGTGAG 57.950 47.619 0.00 0.00 0.00 3.51
569 604 3.405831 CTTCTGCTTTCATGGACTGTGA 58.594 45.455 0.00 0.00 0.00 3.58
570 605 2.095364 GCTTCTGCTTTCATGGACTGTG 60.095 50.000 0.00 0.00 36.03 3.66
571 606 2.157738 GCTTCTGCTTTCATGGACTGT 58.842 47.619 0.00 0.00 36.03 3.55
572 607 2.156917 TGCTTCTGCTTTCATGGACTG 58.843 47.619 0.00 0.00 40.48 3.51
573 608 2.574006 TGCTTCTGCTTTCATGGACT 57.426 45.000 0.00 0.00 40.48 3.85
574 609 3.863142 ATTGCTTCTGCTTTCATGGAC 57.137 42.857 0.00 0.00 40.48 4.02
575 610 3.119743 CGAATTGCTTCTGCTTTCATGGA 60.120 43.478 0.00 0.00 40.48 3.41
576 611 3.119743 TCGAATTGCTTCTGCTTTCATGG 60.120 43.478 0.00 0.00 40.48 3.66
577 612 4.087510 TCGAATTGCTTCTGCTTTCATG 57.912 40.909 0.00 0.00 40.48 3.07
578 613 4.005650 TCTCGAATTGCTTCTGCTTTCAT 58.994 39.130 0.00 0.00 40.48 2.57
579 614 3.402110 TCTCGAATTGCTTCTGCTTTCA 58.598 40.909 0.00 0.00 40.48 2.69
580 615 4.341099 CATCTCGAATTGCTTCTGCTTTC 58.659 43.478 0.00 0.00 40.48 2.62
581 616 3.128242 CCATCTCGAATTGCTTCTGCTTT 59.872 43.478 0.00 0.00 40.48 3.51
582 617 2.681848 CCATCTCGAATTGCTTCTGCTT 59.318 45.455 0.00 0.00 40.48 3.91
583 618 2.286872 CCATCTCGAATTGCTTCTGCT 58.713 47.619 0.00 0.00 40.48 4.24
584 619 1.332997 CCCATCTCGAATTGCTTCTGC 59.667 52.381 0.00 0.00 40.20 4.26
585 620 1.945394 CCCCATCTCGAATTGCTTCTG 59.055 52.381 0.00 0.00 0.00 3.02
586 621 1.561542 ACCCCATCTCGAATTGCTTCT 59.438 47.619 0.00 0.00 0.00 2.85
587 622 2.044123 ACCCCATCTCGAATTGCTTC 57.956 50.000 0.00 0.00 0.00 3.86
588 623 2.369394 GAACCCCATCTCGAATTGCTT 58.631 47.619 0.00 0.00 0.00 3.91
589 624 1.743772 CGAACCCCATCTCGAATTGCT 60.744 52.381 0.00 0.00 37.23 3.91
590 625 0.657840 CGAACCCCATCTCGAATTGC 59.342 55.000 0.00 0.00 37.23 3.56
591 626 2.309528 TCGAACCCCATCTCGAATTG 57.690 50.000 0.00 0.00 40.89 2.32
595 630 0.464036 CCATTCGAACCCCATCTCGA 59.536 55.000 0.00 0.00 42.05 4.04
596 631 1.160329 GCCATTCGAACCCCATCTCG 61.160 60.000 0.00 0.00 36.39 4.04
597 632 0.181350 AGCCATTCGAACCCCATCTC 59.819 55.000 0.00 0.00 0.00 2.75
598 633 1.507140 TAGCCATTCGAACCCCATCT 58.493 50.000 0.00 0.00 0.00 2.90
599 634 2.554032 CAATAGCCATTCGAACCCCATC 59.446 50.000 0.00 0.00 0.00 3.51
600 635 2.174639 TCAATAGCCATTCGAACCCCAT 59.825 45.455 0.00 0.00 0.00 4.00
601 636 1.562008 TCAATAGCCATTCGAACCCCA 59.438 47.619 0.00 0.00 0.00 4.96
602 637 2.158813 TCTCAATAGCCATTCGAACCCC 60.159 50.000 0.00 0.00 0.00 4.95
603 638 3.134458 CTCTCAATAGCCATTCGAACCC 58.866 50.000 0.00 0.00 0.00 4.11
604 639 4.054671 CTCTCTCAATAGCCATTCGAACC 58.945 47.826 0.00 0.00 0.00 3.62
605 640 4.054671 CCTCTCTCAATAGCCATTCGAAC 58.945 47.826 0.00 0.00 0.00 3.95
606 641 3.706594 ACCTCTCTCAATAGCCATTCGAA 59.293 43.478 0.00 0.00 0.00 3.71
607 642 3.300388 ACCTCTCTCAATAGCCATTCGA 58.700 45.455 0.00 0.00 0.00 3.71
608 643 3.742433 ACCTCTCTCAATAGCCATTCG 57.258 47.619 0.00 0.00 0.00 3.34
609 644 5.431765 TGAAACCTCTCTCAATAGCCATTC 58.568 41.667 0.00 0.00 0.00 2.67
610 645 5.435291 CTGAAACCTCTCTCAATAGCCATT 58.565 41.667 0.00 0.00 0.00 3.16
611 646 4.685575 GCTGAAACCTCTCTCAATAGCCAT 60.686 45.833 0.00 0.00 0.00 4.40
612 647 3.369892 GCTGAAACCTCTCTCAATAGCCA 60.370 47.826 0.00 0.00 0.00 4.75
613 648 3.202097 GCTGAAACCTCTCTCAATAGCC 58.798 50.000 0.00 0.00 0.00 3.93
614 649 3.866651 TGCTGAAACCTCTCTCAATAGC 58.133 45.455 0.00 0.00 0.00 2.97
615 650 5.936956 ACTTTGCTGAAACCTCTCTCAATAG 59.063 40.000 0.00 0.00 0.00 1.73
616 651 5.869579 ACTTTGCTGAAACCTCTCTCAATA 58.130 37.500 0.00 0.00 0.00 1.90
617 652 4.723309 ACTTTGCTGAAACCTCTCTCAAT 58.277 39.130 0.00 0.00 0.00 2.57
618 653 4.156455 ACTTTGCTGAAACCTCTCTCAA 57.844 40.909 0.00 0.00 0.00 3.02
619 654 3.845781 ACTTTGCTGAAACCTCTCTCA 57.154 42.857 0.00 0.00 0.00 3.27
620 655 4.130118 TCAACTTTGCTGAAACCTCTCTC 58.870 43.478 0.00 0.00 0.00 3.20
621 656 4.133078 CTCAACTTTGCTGAAACCTCTCT 58.867 43.478 0.00 0.00 0.00 3.10
622 657 4.130118 TCTCAACTTTGCTGAAACCTCTC 58.870 43.478 0.00 0.00 0.00 3.20
623 658 4.156455 TCTCAACTTTGCTGAAACCTCT 57.844 40.909 0.00 0.00 0.00 3.69
624 659 4.320788 CCATCTCAACTTTGCTGAAACCTC 60.321 45.833 0.00 0.00 0.00 3.85
625 660 3.571401 CCATCTCAACTTTGCTGAAACCT 59.429 43.478 0.00 0.00 0.00 3.50
626 661 3.569701 TCCATCTCAACTTTGCTGAAACC 59.430 43.478 0.00 0.00 0.00 3.27
627 662 4.836125 TCCATCTCAACTTTGCTGAAAC 57.164 40.909 0.00 0.00 0.00 2.78
628 663 5.360714 AGTTTCCATCTCAACTTTGCTGAAA 59.639 36.000 0.00 0.00 28.27 2.69
629 664 4.889409 AGTTTCCATCTCAACTTTGCTGAA 59.111 37.500 0.00 0.00 28.27 3.02
630 665 4.276678 CAGTTTCCATCTCAACTTTGCTGA 59.723 41.667 0.00 0.00 30.48 4.26
631 666 4.276678 TCAGTTTCCATCTCAACTTTGCTG 59.723 41.667 0.00 0.00 30.48 4.41
632 667 4.464008 TCAGTTTCCATCTCAACTTTGCT 58.536 39.130 0.00 0.00 30.48 3.91
633 668 4.836125 TCAGTTTCCATCTCAACTTTGC 57.164 40.909 0.00 0.00 30.48 3.68
634 669 5.048224 AGCATCAGTTTCCATCTCAACTTTG 60.048 40.000 0.00 0.00 30.48 2.77
635 670 5.075493 AGCATCAGTTTCCATCTCAACTTT 58.925 37.500 0.00 0.00 30.48 2.66
636 671 4.660168 AGCATCAGTTTCCATCTCAACTT 58.340 39.130 0.00 0.00 30.48 2.66
637 672 4.260170 GAGCATCAGTTTCCATCTCAACT 58.740 43.478 0.00 0.00 33.29 3.16
638 673 4.005650 TGAGCATCAGTTTCCATCTCAAC 58.994 43.478 0.00 0.00 42.56 3.18
639 674 4.290711 TGAGCATCAGTTTCCATCTCAA 57.709 40.909 0.00 0.00 42.56 3.02
640 675 3.986996 TGAGCATCAGTTTCCATCTCA 57.013 42.857 0.00 0.00 42.56 3.27
653 688 7.221452 CCACAATTTAACAATAGCTTGAGCATC 59.779 37.037 5.70 0.00 45.16 3.91
654 689 7.037438 CCACAATTTAACAATAGCTTGAGCAT 58.963 34.615 5.70 0.00 45.16 3.79
655 690 6.389091 CCACAATTTAACAATAGCTTGAGCA 58.611 36.000 5.70 0.00 45.16 4.26
656 691 5.807011 CCCACAATTTAACAATAGCTTGAGC 59.193 40.000 0.00 0.00 42.49 4.26
657 692 7.094205 ACTCCCACAATTTAACAATAGCTTGAG 60.094 37.037 0.00 0.00 36.20 3.02
658 693 6.719370 ACTCCCACAATTTAACAATAGCTTGA 59.281 34.615 0.00 0.00 36.20 3.02
659 694 6.924111 ACTCCCACAATTTAACAATAGCTTG 58.076 36.000 0.00 0.00 38.39 4.01
660 695 6.719370 TGACTCCCACAATTTAACAATAGCTT 59.281 34.615 0.00 0.00 0.00 3.74
661 696 6.245408 TGACTCCCACAATTTAACAATAGCT 58.755 36.000 0.00 0.00 0.00 3.32
662 697 6.374333 TCTGACTCCCACAATTTAACAATAGC 59.626 38.462 0.00 0.00 0.00 2.97
663 698 7.921786 TCTGACTCCCACAATTTAACAATAG 57.078 36.000 0.00 0.00 0.00 1.73
664 699 9.391006 GTATCTGACTCCCACAATTTAACAATA 57.609 33.333 0.00 0.00 0.00 1.90
665 700 7.339466 GGTATCTGACTCCCACAATTTAACAAT 59.661 37.037 0.00 0.00 0.00 2.71
666 701 6.657541 GGTATCTGACTCCCACAATTTAACAA 59.342 38.462 0.00 0.00 0.00 2.83
667 702 6.012858 AGGTATCTGACTCCCACAATTTAACA 60.013 38.462 0.00 0.00 0.00 2.41
668 703 6.415573 AGGTATCTGACTCCCACAATTTAAC 58.584 40.000 0.00 0.00 0.00 2.01
669 704 6.636454 AGGTATCTGACTCCCACAATTTAA 57.364 37.500 0.00 0.00 0.00 1.52
670 705 6.629515 CGAAGGTATCTGACTCCCACAATTTA 60.630 42.308 0.00 0.00 0.00 1.40
671 706 5.501156 GAAGGTATCTGACTCCCACAATTT 58.499 41.667 0.00 0.00 0.00 1.82
672 707 4.383118 CGAAGGTATCTGACTCCCACAATT 60.383 45.833 0.00 0.00 0.00 2.32
673 708 3.133003 CGAAGGTATCTGACTCCCACAAT 59.867 47.826 0.00 0.00 0.00 2.71
674 709 2.496070 CGAAGGTATCTGACTCCCACAA 59.504 50.000 0.00 0.00 0.00 3.33
675 710 2.100197 CGAAGGTATCTGACTCCCACA 58.900 52.381 0.00 0.00 0.00 4.17
676 711 2.376109 TCGAAGGTATCTGACTCCCAC 58.624 52.381 0.00 0.00 0.00 4.61
677 712 2.820728 TCGAAGGTATCTGACTCCCA 57.179 50.000 0.00 0.00 0.00 4.37
678 713 2.226912 CGATCGAAGGTATCTGACTCCC 59.773 54.545 10.26 0.00 0.00 4.30
679 714 2.879646 ACGATCGAAGGTATCTGACTCC 59.120 50.000 24.34 0.00 0.00 3.85
680 715 4.529446 GAACGATCGAAGGTATCTGACTC 58.471 47.826 24.34 0.00 0.00 3.36
681 716 4.555348 GAACGATCGAAGGTATCTGACT 57.445 45.455 24.34 0.00 0.00 3.41
695 730 1.667467 GCCAGCTATCTCCGAACGATC 60.667 57.143 0.00 0.00 0.00 3.69
696 731 0.315568 GCCAGCTATCTCCGAACGAT 59.684 55.000 0.00 0.00 0.00 3.73
697 732 1.035385 TGCCAGCTATCTCCGAACGA 61.035 55.000 0.00 0.00 0.00 3.85
698 733 0.032678 ATGCCAGCTATCTCCGAACG 59.967 55.000 0.00 0.00 0.00 3.95
699 734 2.246719 AATGCCAGCTATCTCCGAAC 57.753 50.000 0.00 0.00 0.00 3.95
700 735 3.281727 AAAATGCCAGCTATCTCCGAA 57.718 42.857 0.00 0.00 0.00 4.30
701 736 3.281727 AAAAATGCCAGCTATCTCCGA 57.718 42.857 0.00 0.00 0.00 4.55
718 753 4.647564 AGCTCCCTGATCTCTTGAAAAA 57.352 40.909 0.00 0.00 0.00 1.94
719 754 4.647564 AAGCTCCCTGATCTCTTGAAAA 57.352 40.909 0.00 0.00 0.00 2.29
720 755 4.288105 AGAAAGCTCCCTGATCTCTTGAAA 59.712 41.667 0.00 0.00 0.00 2.69
721 756 3.843027 AGAAAGCTCCCTGATCTCTTGAA 59.157 43.478 0.00 0.00 0.00 2.69
722 757 3.197333 CAGAAAGCTCCCTGATCTCTTGA 59.803 47.826 9.07 0.00 32.37 3.02
723 758 3.197333 TCAGAAAGCTCCCTGATCTCTTG 59.803 47.826 12.39 0.00 34.78 3.02
724 759 3.448934 TCAGAAAGCTCCCTGATCTCTT 58.551 45.455 12.39 0.00 34.78 2.85
725 760 3.113191 TCAGAAAGCTCCCTGATCTCT 57.887 47.619 12.39 0.00 34.78 3.10
730 765 4.581309 AATTGATCAGAAAGCTCCCTGA 57.419 40.909 17.04 17.04 42.78 3.86
731 766 4.703575 TCAAATTGATCAGAAAGCTCCCTG 59.296 41.667 8.55 8.55 0.00 4.45
732 767 4.927049 TCAAATTGATCAGAAAGCTCCCT 58.073 39.130 0.00 0.00 0.00 4.20
733 768 4.946157 TCTCAAATTGATCAGAAAGCTCCC 59.054 41.667 0.00 0.00 0.00 4.30
734 769 5.647225 ACTCTCAAATTGATCAGAAAGCTCC 59.353 40.000 8.55 0.00 0.00 4.70
735 770 6.740411 ACTCTCAAATTGATCAGAAAGCTC 57.260 37.500 8.55 0.00 0.00 4.09
736 771 7.521871 AAACTCTCAAATTGATCAGAAAGCT 57.478 32.000 8.55 0.00 0.00 3.74
737 772 9.339492 CTAAAACTCTCAAATTGATCAGAAAGC 57.661 33.333 8.55 0.00 0.00 3.51
738 773 9.837525 CCTAAAACTCTCAAATTGATCAGAAAG 57.162 33.333 8.55 0.00 0.00 2.62
739 774 8.299570 GCCTAAAACTCTCAAATTGATCAGAAA 58.700 33.333 8.55 0.00 0.00 2.52
740 775 7.667219 AGCCTAAAACTCTCAAATTGATCAGAA 59.333 33.333 8.55 0.00 0.00 3.02
741 776 7.120285 CAGCCTAAAACTCTCAAATTGATCAGA 59.880 37.037 8.55 0.00 0.00 3.27
742 777 7.120285 TCAGCCTAAAACTCTCAAATTGATCAG 59.880 37.037 0.00 0.00 0.00 2.90
743 778 6.942005 TCAGCCTAAAACTCTCAAATTGATCA 59.058 34.615 0.00 0.00 0.00 2.92
744 779 7.383102 TCAGCCTAAAACTCTCAAATTGATC 57.617 36.000 0.00 0.00 0.00 2.92
745 780 7.765695 TTCAGCCTAAAACTCTCAAATTGAT 57.234 32.000 0.00 0.00 0.00 2.57
746 781 7.581213 TTTCAGCCTAAAACTCTCAAATTGA 57.419 32.000 0.00 0.00 0.00 2.57
747 782 8.822652 AATTTCAGCCTAAAACTCTCAAATTG 57.177 30.769 0.00 0.00 0.00 2.32
748 783 7.809806 CGAATTTCAGCCTAAAACTCTCAAATT 59.190 33.333 0.00 0.00 0.00 1.82
749 784 7.040409 ACGAATTTCAGCCTAAAACTCTCAAAT 60.040 33.333 0.00 0.00 0.00 2.32
750 785 6.262273 ACGAATTTCAGCCTAAAACTCTCAAA 59.738 34.615 0.00 0.00 0.00 2.69
751 786 5.763204 ACGAATTTCAGCCTAAAACTCTCAA 59.237 36.000 0.00 0.00 0.00 3.02
752 787 5.305585 ACGAATTTCAGCCTAAAACTCTCA 58.694 37.500 0.00 0.00 0.00 3.27
753 788 5.864628 ACGAATTTCAGCCTAAAACTCTC 57.135 39.130 0.00 0.00 0.00 3.20
754 789 5.347907 CGTACGAATTTCAGCCTAAAACTCT 59.652 40.000 10.44 0.00 0.00 3.24
755 790 5.119743 ACGTACGAATTTCAGCCTAAAACTC 59.880 40.000 24.41 0.00 0.00 3.01
756 791 4.992951 ACGTACGAATTTCAGCCTAAAACT 59.007 37.500 24.41 0.00 0.00 2.66
757 792 5.273523 ACGTACGAATTTCAGCCTAAAAC 57.726 39.130 24.41 0.00 0.00 2.43
758 793 6.389091 TCTACGTACGAATTTCAGCCTAAAA 58.611 36.000 24.41 0.00 0.00 1.52
759 794 5.953183 TCTACGTACGAATTTCAGCCTAAA 58.047 37.500 24.41 0.00 0.00 1.85
760 795 5.355071 TCTCTACGTACGAATTTCAGCCTAA 59.645 40.000 24.41 0.00 0.00 2.69
761 796 4.877823 TCTCTACGTACGAATTTCAGCCTA 59.122 41.667 24.41 0.00 0.00 3.93
762 797 3.693085 TCTCTACGTACGAATTTCAGCCT 59.307 43.478 24.41 0.00 0.00 4.58
763 798 4.025015 TCTCTACGTACGAATTTCAGCC 57.975 45.455 24.41 0.00 0.00 4.85
764 799 4.027540 GCTTCTCTACGTACGAATTTCAGC 60.028 45.833 24.41 17.15 0.00 4.26
765 800 5.333513 AGCTTCTCTACGTACGAATTTCAG 58.666 41.667 24.41 11.50 0.00 3.02
766 801 5.306532 AGCTTCTCTACGTACGAATTTCA 57.693 39.130 24.41 0.45 0.00 2.69
767 802 7.642978 TCATTAGCTTCTCTACGTACGAATTTC 59.357 37.037 24.41 3.08 0.00 2.17
768 803 7.478322 TCATTAGCTTCTCTACGTACGAATTT 58.522 34.615 24.41 1.05 0.00 1.82
769 804 7.024340 TCATTAGCTTCTCTACGTACGAATT 57.976 36.000 24.41 1.48 0.00 2.17
770 805 6.615264 TCATTAGCTTCTCTACGTACGAAT 57.385 37.500 24.41 2.35 0.00 3.34
771 806 6.426980 TTCATTAGCTTCTCTACGTACGAA 57.573 37.500 24.41 4.04 0.00 3.85
772 807 5.503683 GCTTCATTAGCTTCTCTACGTACGA 60.504 44.000 24.41 4.69 46.77 3.43
773 808 4.671516 GCTTCATTAGCTTCTCTACGTACG 59.328 45.833 15.01 15.01 46.77 3.67
786 821 4.023707 ACATAAATGAGCCGCTTCATTAGC 60.024 41.667 14.50 0.00 44.74 3.09
787 822 5.446709 CACATAAATGAGCCGCTTCATTAG 58.553 41.667 14.50 11.37 44.74 1.73
788 823 4.261155 GCACATAAATGAGCCGCTTCATTA 60.261 41.667 14.50 6.76 44.74 1.90
789 824 3.489738 GCACATAAATGAGCCGCTTCATT 60.490 43.478 10.48 10.48 46.81 2.57
790 825 2.033801 GCACATAAATGAGCCGCTTCAT 59.966 45.455 0.00 0.00 38.25 2.57
791 826 1.401552 GCACATAAATGAGCCGCTTCA 59.598 47.619 0.00 0.00 38.25 3.02
792 827 1.595489 CGCACATAAATGAGCCGCTTC 60.595 52.381 6.77 0.00 40.57 3.86
793 828 0.378257 CGCACATAAATGAGCCGCTT 59.622 50.000 6.77 0.00 40.57 4.68
794 829 0.461870 TCGCACATAAATGAGCCGCT 60.462 50.000 6.77 0.00 40.57 5.52
795 830 0.376852 TTCGCACATAAATGAGCCGC 59.623 50.000 6.77 0.00 40.57 6.53
796 831 1.595489 GCTTCGCACATAAATGAGCCG 60.595 52.381 6.77 3.31 40.57 5.52
797 832 1.401552 TGCTTCGCACATAAATGAGCC 59.598 47.619 6.77 0.00 40.57 4.70
798 833 2.540361 CCTGCTTCGCACATAAATGAGC 60.540 50.000 2.68 2.68 40.32 4.26
799 834 2.540361 GCCTGCTTCGCACATAAATGAG 60.540 50.000 0.00 0.00 33.79 2.90
800 835 1.401552 GCCTGCTTCGCACATAAATGA 59.598 47.619 0.00 0.00 33.79 2.57
801 836 1.831343 GCCTGCTTCGCACATAAATG 58.169 50.000 0.00 0.00 33.79 2.32
802 837 0.378257 CGCCTGCTTCGCACATAAAT 59.622 50.000 0.00 0.00 33.79 1.40
803 838 0.672091 TCGCCTGCTTCGCACATAAA 60.672 50.000 0.00 0.00 33.79 1.40
804 839 1.079474 TCGCCTGCTTCGCACATAA 60.079 52.632 0.00 0.00 33.79 1.90
805 840 1.809619 GTCGCCTGCTTCGCACATA 60.810 57.895 0.00 0.00 33.79 2.29
806 841 3.121030 GTCGCCTGCTTCGCACAT 61.121 61.111 0.00 0.00 33.79 3.21
807 842 4.600576 TGTCGCCTGCTTCGCACA 62.601 61.111 0.00 0.00 33.79 4.57
808 843 3.300667 CTTGTCGCCTGCTTCGCAC 62.301 63.158 0.00 0.00 33.79 5.34
809 844 3.043713 CTTGTCGCCTGCTTCGCA 61.044 61.111 0.00 0.00 36.92 5.10
810 845 3.044305 ACTTGTCGCCTGCTTCGC 61.044 61.111 0.00 0.00 0.00 4.70
811 846 1.498865 AACACTTGTCGCCTGCTTCG 61.499 55.000 0.00 0.00 0.00 3.79
812 847 1.461127 CTAACACTTGTCGCCTGCTTC 59.539 52.381 0.00 0.00 0.00 3.86
813 848 1.512926 CTAACACTTGTCGCCTGCTT 58.487 50.000 0.00 0.00 0.00 3.91
814 849 0.320771 CCTAACACTTGTCGCCTGCT 60.321 55.000 0.00 0.00 0.00 4.24
815 850 0.320421 TCCTAACACTTGTCGCCTGC 60.320 55.000 0.00 0.00 0.00 4.85
816 851 1.272490 TCTCCTAACACTTGTCGCCTG 59.728 52.381 0.00 0.00 0.00 4.85
817 852 1.629043 TCTCCTAACACTTGTCGCCT 58.371 50.000 0.00 0.00 0.00 5.52
818 853 2.029290 TCTTCTCCTAACACTTGTCGCC 60.029 50.000 0.00 0.00 0.00 5.54
819 854 3.299340 TCTTCTCCTAACACTTGTCGC 57.701 47.619 0.00 0.00 0.00 5.19
820 855 4.810790 ACATCTTCTCCTAACACTTGTCG 58.189 43.478 0.00 0.00 0.00 4.35
821 856 8.660373 CATAAACATCTTCTCCTAACACTTGTC 58.340 37.037 0.00 0.00 0.00 3.18
822 857 7.607991 CCATAAACATCTTCTCCTAACACTTGT 59.392 37.037 0.00 0.00 0.00 3.16
823 858 7.414540 GCCATAAACATCTTCTCCTAACACTTG 60.415 40.741 0.00 0.00 0.00 3.16
824 859 6.599638 GCCATAAACATCTTCTCCTAACACTT 59.400 38.462 0.00 0.00 0.00 3.16
825 860 6.069963 AGCCATAAACATCTTCTCCTAACACT 60.070 38.462 0.00 0.00 0.00 3.55
826 861 6.116126 AGCCATAAACATCTTCTCCTAACAC 58.884 40.000 0.00 0.00 0.00 3.32
827 862 6.313519 AGCCATAAACATCTTCTCCTAACA 57.686 37.500 0.00 0.00 0.00 2.41
828 863 8.732746 TTAAGCCATAAACATCTTCTCCTAAC 57.267 34.615 0.00 0.00 0.00 2.34
829 864 9.920946 AATTAAGCCATAAACATCTTCTCCTAA 57.079 29.630 0.00 0.00 0.00 2.69
831 866 9.343539 GTAATTAAGCCATAAACATCTTCTCCT 57.656 33.333 0.00 0.00 0.00 3.69
832 867 9.120538 TGTAATTAAGCCATAAACATCTTCTCC 57.879 33.333 0.00 0.00 0.00 3.71
833 868 9.937175 GTGTAATTAAGCCATAAACATCTTCTC 57.063 33.333 0.00 0.00 0.00 2.87
834 869 9.686683 AGTGTAATTAAGCCATAAACATCTTCT 57.313 29.630 0.00 0.00 0.00 2.85
835 870 9.937175 GAGTGTAATTAAGCCATAAACATCTTC 57.063 33.333 0.00 0.00 0.00 2.87
836 871 8.903820 GGAGTGTAATTAAGCCATAAACATCTT 58.096 33.333 0.00 0.00 0.00 2.40
837 872 8.275040 AGGAGTGTAATTAAGCCATAAACATCT 58.725 33.333 0.00 0.00 0.00 2.90
838 873 8.345565 CAGGAGTGTAATTAAGCCATAAACATC 58.654 37.037 0.00 0.00 0.00 3.06
839 874 7.834181 ACAGGAGTGTAATTAAGCCATAAACAT 59.166 33.333 0.00 0.00 34.05 2.71
840 875 7.172342 ACAGGAGTGTAATTAAGCCATAAACA 58.828 34.615 0.00 0.00 34.05 2.83
841 876 7.625828 ACAGGAGTGTAATTAAGCCATAAAC 57.374 36.000 0.00 0.00 34.05 2.01
842 877 8.644374 AAACAGGAGTGTAATTAAGCCATAAA 57.356 30.769 0.00 0.00 35.08 1.40
843 878 8.644374 AAAACAGGAGTGTAATTAAGCCATAA 57.356 30.769 0.00 0.00 35.08 1.90
844 879 7.338449 GGAAAACAGGAGTGTAATTAAGCCATA 59.662 37.037 0.00 0.00 35.08 2.74
845 880 6.152831 GGAAAACAGGAGTGTAATTAAGCCAT 59.847 38.462 0.00 0.00 35.08 4.40
846 881 5.475564 GGAAAACAGGAGTGTAATTAAGCCA 59.524 40.000 0.00 0.00 35.08 4.75
847 882 5.710567 AGGAAAACAGGAGTGTAATTAAGCC 59.289 40.000 0.00 0.00 35.08 4.35
848 883 6.819397 AGGAAAACAGGAGTGTAATTAAGC 57.181 37.500 0.00 0.00 35.08 3.09
852 887 8.793592 GTTCATTAGGAAAACAGGAGTGTAATT 58.206 33.333 0.00 0.00 37.23 1.40
853 888 7.942341 TGTTCATTAGGAAAACAGGAGTGTAAT 59.058 33.333 0.00 0.00 37.23 1.89
854 889 7.227910 GTGTTCATTAGGAAAACAGGAGTGTAA 59.772 37.037 0.00 0.00 42.37 2.41
855 890 6.708949 GTGTTCATTAGGAAAACAGGAGTGTA 59.291 38.462 0.00 0.00 42.37 2.90
856 891 5.531287 GTGTTCATTAGGAAAACAGGAGTGT 59.469 40.000 0.00 0.00 42.37 3.55
857 892 5.334105 CGTGTTCATTAGGAAAACAGGAGTG 60.334 44.000 0.87 0.00 42.86 3.51
858 893 4.755123 CGTGTTCATTAGGAAAACAGGAGT 59.245 41.667 0.87 0.00 42.86 3.85
859 894 4.755123 ACGTGTTCATTAGGAAAACAGGAG 59.245 41.667 12.42 0.47 42.86 3.69
860 895 4.710324 ACGTGTTCATTAGGAAAACAGGA 58.290 39.130 12.42 0.00 42.86 3.86
861 896 5.212194 CAACGTGTTCATTAGGAAAACAGG 58.788 41.667 0.87 5.82 42.86 4.00
862 897 5.816919 ACAACGTGTTCATTAGGAAAACAG 58.183 37.500 0.87 0.00 42.86 3.16
863 898 5.821516 ACAACGTGTTCATTAGGAAAACA 57.178 34.783 0.87 0.00 42.86 2.83
864 899 7.577979 TGATACAACGTGTTCATTAGGAAAAC 58.422 34.615 0.00 0.00 39.88 2.43
865 900 7.731882 TGATACAACGTGTTCATTAGGAAAA 57.268 32.000 0.00 0.00 37.23 2.29
866 901 7.604545 TCATGATACAACGTGTTCATTAGGAAA 59.395 33.333 0.00 0.00 37.23 3.13
867 902 7.064134 GTCATGATACAACGTGTTCATTAGGAA 59.936 37.037 0.00 0.00 31.03 3.36
868 903 6.533723 GTCATGATACAACGTGTTCATTAGGA 59.466 38.462 0.00 0.00 31.03 2.94
869 904 6.535150 AGTCATGATACAACGTGTTCATTAGG 59.465 38.462 0.00 0.00 31.03 2.69
870 905 7.063426 ACAGTCATGATACAACGTGTTCATTAG 59.937 37.037 0.00 0.00 31.03 1.73
871 906 6.871492 ACAGTCATGATACAACGTGTTCATTA 59.129 34.615 0.00 0.00 31.03 1.90
872 907 5.700832 ACAGTCATGATACAACGTGTTCATT 59.299 36.000 0.00 0.00 31.03 2.57
873 908 5.237815 ACAGTCATGATACAACGTGTTCAT 58.762 37.500 0.00 0.00 32.45 2.57
874 909 4.627058 ACAGTCATGATACAACGTGTTCA 58.373 39.130 0.00 0.00 0.00 3.18
875 910 6.696198 CATACAGTCATGATACAACGTGTTC 58.304 40.000 0.00 0.00 0.00 3.18
876 911 5.063438 GCATACAGTCATGATACAACGTGTT 59.937 40.000 0.00 0.00 0.00 3.32
877 912 4.566759 GCATACAGTCATGATACAACGTGT 59.433 41.667 0.00 0.00 0.00 4.49
878 913 4.025730 GGCATACAGTCATGATACAACGTG 60.026 45.833 0.00 0.00 0.00 4.49
879 914 4.119862 GGCATACAGTCATGATACAACGT 58.880 43.478 0.00 0.00 0.00 3.99
880 915 4.209911 CAGGCATACAGTCATGATACAACG 59.790 45.833 0.00 0.00 0.00 4.10
881 916 4.024556 GCAGGCATACAGTCATGATACAAC 60.025 45.833 0.00 0.00 0.00 3.32
882 917 4.129380 GCAGGCATACAGTCATGATACAA 58.871 43.478 0.00 0.00 0.00 2.41
883 918 3.389002 AGCAGGCATACAGTCATGATACA 59.611 43.478 0.00 0.00 0.00 2.29
884 919 4.000331 AGCAGGCATACAGTCATGATAC 58.000 45.455 0.00 0.00 0.00 2.24
885 920 4.694760 AAGCAGGCATACAGTCATGATA 57.305 40.909 0.00 0.00 0.00 2.15
886 921 3.572632 AAGCAGGCATACAGTCATGAT 57.427 42.857 0.00 0.00 0.00 2.45
887 922 4.080919 ACTTAAGCAGGCATACAGTCATGA 60.081 41.667 1.29 0.00 0.00 3.07
888 923 4.194640 ACTTAAGCAGGCATACAGTCATG 58.805 43.478 1.29 0.00 0.00 3.07
889 924 4.494091 ACTTAAGCAGGCATACAGTCAT 57.506 40.909 1.29 0.00 0.00 3.06
890 925 3.981071 ACTTAAGCAGGCATACAGTCA 57.019 42.857 1.29 0.00 0.00 3.41
891 926 5.975410 CTTACTTAAGCAGGCATACAGTC 57.025 43.478 1.29 0.00 0.00 3.51
910 945 9.973450 TGCAACATAAAAGAGTTTTATTGCTTA 57.027 25.926 20.41 8.14 44.01 3.09
911 946 8.885494 TGCAACATAAAAGAGTTTTATTGCTT 57.115 26.923 20.41 6.45 44.01 3.91
912 947 8.885494 TTGCAACATAAAAGAGTTTTATTGCT 57.115 26.923 20.41 3.56 44.01 3.91
913 948 9.928236 TTTTGCAACATAAAAGAGTTTTATTGC 57.072 25.926 16.48 16.48 43.98 3.56
943 978 1.778027 CGCGTGGGTCGAACCTTTTT 61.778 55.000 22.56 0.00 42.86 1.94
944 979 2.248835 CGCGTGGGTCGAACCTTTT 61.249 57.895 22.56 0.00 42.86 2.27
945 980 2.663852 CGCGTGGGTCGAACCTTT 60.664 61.111 22.56 0.00 42.86 3.11
946 981 4.675029 CCGCGTGGGTCGAACCTT 62.675 66.667 22.56 0.00 42.86 3.50
1389 1439 1.744639 GATCGCAGATGGCTCCAGA 59.255 57.895 0.00 0.00 45.12 3.86
1391 1441 2.418777 CGATCGCAGATGGCTCCA 59.581 61.111 0.26 0.00 45.12 3.86
1939 1989 9.561069 GAGAGCAATGATAAAATAGGAGGTTTA 57.439 33.333 0.00 0.00 0.00 2.01
2053 2103 3.050275 GGGAACAGCGACTGCACC 61.050 66.667 6.74 9.47 46.23 5.01
2141 2191 0.037232 GAGCTGGCCGGATATGGTAC 60.037 60.000 18.31 0.00 0.00 3.34
2162 2212 0.036010 CGTGGGCAGAAGAGAATGGT 60.036 55.000 0.00 0.00 0.00 3.55
2209 2270 7.214467 ACTACTCCATACATTTTGTTGTTGG 57.786 36.000 0.00 0.00 33.12 3.77
2877 2963 2.877043 AAAAGCAAGCAACAGACTGG 57.123 45.000 7.51 0.00 0.00 4.00
2987 3357 0.404040 ACGCAGATCCCCCTCAAAAA 59.596 50.000 0.00 0.00 0.00 1.94
2988 3358 0.322456 CACGCAGATCCCCCTCAAAA 60.322 55.000 0.00 0.00 0.00 2.44
2989 3359 1.299648 CACGCAGATCCCCCTCAAA 59.700 57.895 0.00 0.00 0.00 2.69
2990 3360 1.488705 AACACGCAGATCCCCCTCAA 61.489 55.000 0.00 0.00 0.00 3.02
2991 3361 1.899437 GAACACGCAGATCCCCCTCA 61.899 60.000 0.00 0.00 0.00 3.86
2992 3362 1.153349 GAACACGCAGATCCCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
2993 3363 2.990479 GAACACGCAGATCCCCCT 59.010 61.111 0.00 0.00 0.00 4.79
2994 3364 2.511600 CGAACACGCAGATCCCCC 60.512 66.667 0.00 0.00 0.00 5.40
2995 3365 1.375523 AACGAACACGCAGATCCCC 60.376 57.895 0.00 0.00 0.00 4.81
2996 3366 0.669318 TCAACGAACACGCAGATCCC 60.669 55.000 0.00 0.00 0.00 3.85
2997 3367 1.126846 CTTCAACGAACACGCAGATCC 59.873 52.381 0.00 0.00 0.00 3.36
2998 3368 1.126846 CCTTCAACGAACACGCAGATC 59.873 52.381 0.00 0.00 0.00 2.75
2999 3369 1.148310 CCTTCAACGAACACGCAGAT 58.852 50.000 0.00 0.00 0.00 2.90
3000 3370 1.495584 GCCTTCAACGAACACGCAGA 61.496 55.000 0.00 0.00 0.00 4.26
3001 3371 1.082756 GCCTTCAACGAACACGCAG 60.083 57.895 0.00 0.00 0.00 5.18
3002 3372 2.539338 GGCCTTCAACGAACACGCA 61.539 57.895 0.00 0.00 0.00 5.24
3003 3373 2.251371 GGCCTTCAACGAACACGC 59.749 61.111 0.00 0.00 0.00 5.34
3004 3374 2.241880 ACGGCCTTCAACGAACACG 61.242 57.895 0.00 0.00 0.00 4.49
3005 3375 1.278637 CACGGCCTTCAACGAACAC 59.721 57.895 0.00 0.00 0.00 3.32
3006 3376 1.890041 CCACGGCCTTCAACGAACA 60.890 57.895 0.00 0.00 0.00 3.18
3007 3377 2.613506 CCCACGGCCTTCAACGAAC 61.614 63.158 0.00 0.00 0.00 3.95
3008 3378 1.756408 TACCCACGGCCTTCAACGAA 61.756 55.000 0.00 0.00 0.00 3.85
3009 3379 1.546589 ATACCCACGGCCTTCAACGA 61.547 55.000 0.00 0.00 0.00 3.85
3010 3380 0.176219 TATACCCACGGCCTTCAACG 59.824 55.000 0.00 0.00 0.00 4.10
3011 3381 1.474498 CCTATACCCACGGCCTTCAAC 60.474 57.143 0.00 0.00 0.00 3.18
3012 3382 0.834612 CCTATACCCACGGCCTTCAA 59.165 55.000 0.00 0.00 0.00 2.69
3013 3383 0.325860 ACCTATACCCACGGCCTTCA 60.326 55.000 0.00 0.00 0.00 3.02
3018 3388 3.320256 GGCTATATACCTATACCCACGGC 59.680 52.174 0.00 0.00 0.00 5.68
3023 3393 5.237344 CACGTACGGCTATATACCTATACCC 59.763 48.000 21.06 0.00 0.00 3.69
3227 3610 1.968493 ACGTACATGACTGTTGGGAGT 59.032 47.619 0.00 0.00 36.79 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.