Multiple sequence alignment - TraesCS3D01G262500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G262500 chr3D 100.000 4969 0 0 1 4969 364231311 364236279 0.000000e+00 9177
1 TraesCS3D01G262500 chr3A 94.202 3294 119 18 1508 4753 485599026 485602295 0.000000e+00 4959
2 TraesCS3D01G262500 chr3A 93.839 3295 128 21 1508 4753 485522387 485525655 0.000000e+00 4891
3 TraesCS3D01G262500 chr3A 91.892 888 50 11 39 911 485515339 485516219 0.000000e+00 1221
4 TraesCS3D01G262500 chr3A 97.167 600 12 3 915 1512 485521756 485522352 0.000000e+00 1009
5 TraesCS3D01G262500 chr3A 97.656 512 12 0 1001 1512 485598480 485598991 0.000000e+00 880
6 TraesCS3D01G262500 chr3A 95.000 220 8 1 4750 4969 485525959 485526175 4.760000e-90 342
7 TraesCS3D01G262500 chr3A 95.000 220 8 1 4750 4969 485602444 485602660 4.760000e-90 342
8 TraesCS3D01G262500 chr3B 95.096 1978 59 17 2854 4799 474370587 474372558 0.000000e+00 3081
9 TraesCS3D01G262500 chr3B 95.803 1358 43 3 1508 2865 474367642 474368985 0.000000e+00 2180
10 TraesCS3D01G262500 chr3B 91.995 887 42 9 30 911 474366083 474366945 0.000000e+00 1218
11 TraesCS3D01G262500 chr3B 94.355 620 10 3 915 1512 474366991 474367607 0.000000e+00 928
12 TraesCS3D01G262500 chr3B 95.706 163 7 0 4807 4969 474381209 474381371 3.810000e-66 263
13 TraesCS3D01G262500 chr7A 82.353 408 54 9 1508 1912 143743122 143742730 6.160000e-89 339


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G262500 chr3D 364231311 364236279 4968 False 9177.000000 9177 100.000000 1 4969 1 chr3D.!!$F1 4968
1 TraesCS3D01G262500 chr3A 485521756 485526175 4419 False 2080.666667 4891 95.335333 915 4969 3 chr3A.!!$F2 4054
2 TraesCS3D01G262500 chr3A 485598480 485602660 4180 False 2060.333333 4959 95.619333 1001 4969 3 chr3A.!!$F3 3968
3 TraesCS3D01G262500 chr3A 485515339 485516219 880 False 1221.000000 1221 91.892000 39 911 1 chr3A.!!$F1 872
4 TraesCS3D01G262500 chr3B 474366083 474372558 6475 False 1851.750000 3081 94.312250 30 4799 4 chr3B.!!$F2 4769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 683 0.247814 CATCGCGAACTTGTCATGCC 60.248 55.000 15.24 0.0 0.00 4.40 F
845 867 0.462047 GGACCCGACCATACAAGCAG 60.462 60.000 0.00 0.0 0.00 4.24 F
846 868 0.535335 GACCCGACCATACAAGCAGA 59.465 55.000 0.00 0.0 0.00 4.26 F
847 869 0.981183 ACCCGACCATACAAGCAGAA 59.019 50.000 0.00 0.0 0.00 3.02 F
848 870 1.066143 ACCCGACCATACAAGCAGAAG 60.066 52.381 0.00 0.0 0.00 2.85 F
849 871 1.207089 CCCGACCATACAAGCAGAAGA 59.793 52.381 0.00 0.0 0.00 2.87 F
850 872 2.354704 CCCGACCATACAAGCAGAAGAA 60.355 50.000 0.00 0.0 0.00 2.52 F
2920 4666 1.144969 GTCTCGCCACGAAATGAACA 58.855 50.000 0.00 0.0 34.74 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1895 2.107378 TGTGGCCTCTATGTTTTGACCA 59.893 45.455 3.32 0.00 0.00 4.02 R
1927 2059 5.061179 TCTAACCCAAACTCTAGCAACAAC 58.939 41.667 0.00 0.00 0.00 3.32 R
2099 2231 5.726308 TCAGGGTTGAGATTCTTAAGGATGA 59.274 40.000 0.00 0.00 0.00 2.92 R
2197 2329 8.539674 GTTCGTATTTCTCAAAGCAAAAACAAT 58.460 29.630 0.00 0.00 0.00 2.71 R
2852 2984 6.990349 CCTACTCTGAACTAAAACCAGAACAA 59.010 38.462 0.00 0.00 36.61 2.83 R
2905 4651 7.499438 TTAAATTTATGTTCATTTCGTGGCG 57.501 32.000 0.00 0.00 0.00 5.69 R
3068 4814 7.371159 TGATCCTATCGAGTCAATGTACATTC 58.629 38.462 18.25 8.52 0.00 2.67 R
4334 6113 0.317436 TTGCGGTAAAAGCAGCAACG 60.317 50.000 0.00 0.00 46.01 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.802556 GAGCTCAACATTCGCTTGAG 57.197 50.000 9.40 7.99 45.12 3.02
20 21 1.396301 GAGCTCAACATTCGCTTGAGG 59.604 52.381 9.40 0.00 43.34 3.86
21 22 0.449388 GCTCAACATTCGCTTGAGGG 59.551 55.000 12.88 0.00 43.34 4.30
22 23 0.449388 CTCAACATTCGCTTGAGGGC 59.551 55.000 5.04 0.00 40.64 5.19
23 24 0.250684 TCAACATTCGCTTGAGGGCA 60.251 50.000 0.00 0.00 0.00 5.36
24 25 0.597568 CAACATTCGCTTGAGGGCAA 59.402 50.000 0.00 0.00 0.00 4.52
36 37 1.004277 TGAGGGCAAGCGAGGTTTATT 59.996 47.619 0.00 0.00 0.00 1.40
37 38 2.237643 TGAGGGCAAGCGAGGTTTATTA 59.762 45.455 0.00 0.00 0.00 0.98
75 77 5.044402 CCCTTACCCTAAAGAATTTCCCTCA 60.044 44.000 0.00 0.00 40.09 3.86
230 232 4.036027 CGAGGGTTTCAAGAATCCATCATG 59.964 45.833 18.88 5.66 39.58 3.07
482 484 4.630111 GAGATCGCATCTTCCTCTTCAAT 58.370 43.478 0.00 0.00 40.38 2.57
681 683 0.247814 CATCGCGAACTTGTCATGCC 60.248 55.000 15.24 0.00 0.00 4.40
722 724 2.616842 GTGGATTTCTCAACAACACCGT 59.383 45.455 0.00 0.00 0.00 4.83
728 730 2.053465 CAACAACACCGTCGTGCG 60.053 61.111 0.00 0.00 44.40 5.34
844 866 1.600107 GGACCCGACCATACAAGCA 59.400 57.895 0.00 0.00 0.00 3.91
845 867 0.462047 GGACCCGACCATACAAGCAG 60.462 60.000 0.00 0.00 0.00 4.24
846 868 0.535335 GACCCGACCATACAAGCAGA 59.465 55.000 0.00 0.00 0.00 4.26
847 869 0.981183 ACCCGACCATACAAGCAGAA 59.019 50.000 0.00 0.00 0.00 3.02
848 870 1.066143 ACCCGACCATACAAGCAGAAG 60.066 52.381 0.00 0.00 0.00 2.85
849 871 1.207089 CCCGACCATACAAGCAGAAGA 59.793 52.381 0.00 0.00 0.00 2.87
850 872 2.354704 CCCGACCATACAAGCAGAAGAA 60.355 50.000 0.00 0.00 0.00 2.52
1203 1293 4.095483 GCGAATCTTGTGAGGTTCATGATT 59.905 41.667 0.00 0.00 42.10 2.57
1645 1774 4.929819 TGTTTTCCAGAGGTTTTTAGCC 57.070 40.909 0.00 0.00 0.00 3.93
1835 1964 3.498397 GCATACTGTACTTGCACTGTTGT 59.502 43.478 8.19 0.00 36.40 3.32
1873 2002 7.921214 TGTAATAAATGAGAAAACACGGCAAAA 59.079 29.630 0.00 0.00 0.00 2.44
1927 2059 5.782047 TGTGAAATGCCTATTTGAAACCTG 58.218 37.500 0.00 0.00 36.66 4.00
1948 2080 4.783055 TGTTGTTGCTAGAGTTTGGGTTA 58.217 39.130 0.00 0.00 0.00 2.85
2099 2231 7.955918 AGTTCCAGTTGAAAAGCATAATTTCT 58.044 30.769 0.00 0.00 37.60 2.52
2220 2352 9.180678 AGTATTGTTTTTGCTTTGAGAAATACG 57.819 29.630 0.00 0.00 34.64 3.06
2266 2398 6.403866 TGTTACAGGAATTGCACAAGAAAT 57.596 33.333 0.00 0.00 0.00 2.17
2635 2767 2.419574 GGGCCTTTAATCGTAGCACAGA 60.420 50.000 0.84 0.00 0.00 3.41
2852 2984 9.689501 TTAATACTCCCTTCGTTCCAAAATAAT 57.310 29.630 0.00 0.00 0.00 1.28
2905 4651 3.006247 GGGCTGATGAAGAAAGTGTCTC 58.994 50.000 0.00 0.00 34.56 3.36
2920 4666 1.144969 GTCTCGCCACGAAATGAACA 58.855 50.000 0.00 0.00 34.74 3.18
2921 4667 1.732259 GTCTCGCCACGAAATGAACAT 59.268 47.619 0.00 0.00 34.74 2.71
3068 4814 5.059404 ACCTTTTGTGTCTTTGTCTGTTG 57.941 39.130 0.00 0.00 0.00 3.33
3160 4906 2.159435 ACTTTGTTGCTGTTCGGTTGTC 60.159 45.455 0.00 0.00 0.00 3.18
3250 4996 4.035558 TGCCATATCATCGTTTCTTCAAGC 59.964 41.667 0.00 0.00 0.00 4.01
3414 5160 8.974060 TCACTGTACTGTATCATACTATGTGA 57.026 34.615 4.96 0.00 31.33 3.58
3540 5296 8.802267 CACTGAATTCCCTTAAATTTCACCTTA 58.198 33.333 2.27 0.00 0.00 2.69
3541 5297 9.374711 ACTGAATTCCCTTAAATTTCACCTTAA 57.625 29.630 2.27 0.00 0.00 1.85
3662 5418 7.661847 ACTGCAAATTACCAATAGGCTATCTAC 59.338 37.037 7.63 0.00 39.06 2.59
3747 5505 9.003658 GTGAGAAAACTAAGGAAATCTGATTCA 57.996 33.333 2.92 0.00 0.00 2.57
3748 5506 9.573166 TGAGAAAACTAAGGAAATCTGATTCAA 57.427 29.630 2.92 0.00 0.00 2.69
3835 5593 3.624777 ACATTTCTTATGGCCACCTCTG 58.375 45.455 8.16 1.97 0.00 3.35
3909 5667 0.318275 GCTCTCGCTCTTATCACCCG 60.318 60.000 0.00 0.00 0.00 5.28
3959 5717 1.415672 AACGGTGGGAGAGGAAAGCA 61.416 55.000 0.00 0.00 0.00 3.91
3982 5740 6.864685 GCAAACATGTGAATTTCTGAAGATCA 59.135 34.615 0.00 3.87 0.00 2.92
4118 5878 3.827722 CAAAAACCCACAAGACCTAGGA 58.172 45.455 17.98 0.00 0.00 2.94
4188 5959 9.998752 AGGTTATGTAGCTAGATATTCCTATGT 57.001 33.333 22.21 8.58 31.41 2.29
4193 5964 8.958060 TGTAGCTAGATATTCCTATGTTCCTT 57.042 34.615 0.00 0.00 0.00 3.36
4194 5965 9.381038 TGTAGCTAGATATTCCTATGTTCCTTT 57.619 33.333 0.00 0.00 0.00 3.11
4197 5968 8.718656 AGCTAGATATTCCTATGTTCCTTTTGT 58.281 33.333 0.00 0.00 0.00 2.83
4286 6057 0.179097 CTTAGCGAGACAGGGAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
4291 6062 0.250234 CGAGACAGGGAAGGCATTGA 59.750 55.000 0.00 0.00 0.00 2.57
4334 6113 3.059597 GTGTACGATTATGACATGCTGCC 60.060 47.826 0.00 0.00 0.00 4.85
4349 6128 0.387239 CTGCCGTTGCTGCTTTTACC 60.387 55.000 0.00 0.00 38.71 2.85
4446 6272 2.538437 CTGAAGCGTCCAGATCAGAAG 58.462 52.381 0.00 0.00 41.38 2.85
4600 6426 2.092646 ACGCTGAAATATACCCTGGCAA 60.093 45.455 0.00 0.00 0.00 4.52
4647 6484 4.378774 CTGTTATCCTGCCTTCAGATGAG 58.621 47.826 0.00 0.00 42.95 2.90
4672 6509 6.017852 GGTTATTTTAAGCGAGAATCCTCTGG 60.018 42.308 0.00 0.00 37.28 3.86
4695 6536 5.298777 GGATGACTAGAACGGAGTAGCTAAA 59.701 44.000 0.00 0.00 45.00 1.85
4697 6538 6.579666 TGACTAGAACGGAGTAGCTAAAAA 57.420 37.500 0.00 0.00 45.00 1.94
4698 6539 6.385033 TGACTAGAACGGAGTAGCTAAAAAC 58.615 40.000 0.00 0.00 45.00 2.43
4710 6553 4.795970 AGCTAAAAACAGAGAACACACG 57.204 40.909 0.00 0.00 0.00 4.49
4721 6564 0.589708 GAACACACGGCCCAGTTAAC 59.410 55.000 0.00 0.00 0.00 2.01
4723 6566 0.534203 ACACACGGCCCAGTTAACTG 60.534 55.000 25.79 25.79 43.40 3.16
4778 6928 1.134098 CGAAATGCCATGGAGGTAGGT 60.134 52.381 18.40 0.00 40.61 3.08
4779 6929 2.104111 CGAAATGCCATGGAGGTAGGTA 59.896 50.000 18.40 0.00 40.61 3.08
4780 6930 3.244561 CGAAATGCCATGGAGGTAGGTAT 60.245 47.826 18.40 0.00 40.61 2.73
4799 6949 7.404671 AGGTATTATTGGAATGGTTGTGAAC 57.595 36.000 0.00 0.00 0.00 3.18
4827 6977 0.034896 GGTGGTGGTGTTCGTCTCAT 59.965 55.000 0.00 0.00 0.00 2.90
4893 7043 4.396166 GCTTGCTGCCTACTGAAAGAAATA 59.604 41.667 0.00 0.00 33.25 1.40
4958 7108 1.508545 CCTCTTGAGAGCGCTTCGA 59.491 57.895 13.26 10.18 40.75 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.396301 CCTCAAGCGAATGTTGAGCTC 59.604 52.381 6.82 6.82 46.50 4.09
1 2 1.446907 CCTCAAGCGAATGTTGAGCT 58.553 50.000 7.04 0.00 46.50 4.09
4 5 0.250684 TGCCCTCAAGCGAATGTTGA 60.251 50.000 0.00 0.00 34.65 3.18
6 7 0.883833 CTTGCCCTCAAGCGAATGTT 59.116 50.000 0.00 0.00 42.66 2.71
15 16 0.398696 TAAACCTCGCTTGCCCTCAA 59.601 50.000 0.00 0.00 0.00 3.02
16 17 0.618458 ATAAACCTCGCTTGCCCTCA 59.382 50.000 0.00 0.00 0.00 3.86
17 18 1.751437 AATAAACCTCGCTTGCCCTC 58.249 50.000 0.00 0.00 0.00 4.30
18 19 3.014623 GTTAATAAACCTCGCTTGCCCT 58.985 45.455 0.00 0.00 0.00 5.19
19 20 2.750712 TGTTAATAAACCTCGCTTGCCC 59.249 45.455 0.00 0.00 34.49 5.36
20 21 4.632538 ATGTTAATAAACCTCGCTTGCC 57.367 40.909 0.00 0.00 34.49 4.52
21 22 5.636837 TCAATGTTAATAAACCTCGCTTGC 58.363 37.500 0.00 0.00 34.49 4.01
22 23 7.250569 ACATCAATGTTAATAAACCTCGCTTG 58.749 34.615 0.00 0.00 37.90 4.01
23 24 7.391148 ACATCAATGTTAATAAACCTCGCTT 57.609 32.000 0.00 0.00 37.90 4.68
75 77 1.541588 GAGCCAAAGTCGCAGGATTTT 59.458 47.619 0.00 0.00 32.94 1.82
236 238 1.134694 GGAAACGCGGTGATTCTGC 59.865 57.895 12.47 0.00 44.34 4.26
342 344 6.355747 GGATCTGACAAAGGAGATGAAGATT 58.644 40.000 0.00 0.00 30.47 2.40
381 383 6.919775 AGTCAGTACTGGTTCTACAGAAAT 57.080 37.500 22.48 0.00 40.97 2.17
617 619 3.568333 GGAGGAATAGGGGTAGGGTATCC 60.568 56.522 0.00 0.00 0.00 2.59
620 622 1.430464 CGGAGGAATAGGGGTAGGGTA 59.570 57.143 0.00 0.00 0.00 3.69
626 628 0.635009 TGTCTCGGAGGAATAGGGGT 59.365 55.000 4.96 0.00 0.00 4.95
664 666 2.379634 CGGCATGACAAGTTCGCGA 61.380 57.895 3.71 3.71 0.00 5.87
666 668 1.970917 CTCCGGCATGACAAGTTCGC 61.971 60.000 0.00 0.00 0.00 4.70
681 683 3.771160 CCCCACCCTCGAACTCCG 61.771 72.222 0.00 0.00 40.25 4.63
728 730 1.792006 TTTTTCTTCCTCTCGGCGAC 58.208 50.000 4.99 0.00 0.00 5.19
788 810 3.320610 TGTGGATTTTGAACCCCTCAA 57.679 42.857 0.00 0.00 42.48 3.02
790 812 3.386402 TGTTTGTGGATTTTGAACCCCTC 59.614 43.478 0.00 0.00 0.00 4.30
791 813 3.379452 TGTTTGTGGATTTTGAACCCCT 58.621 40.909 0.00 0.00 0.00 4.79
792 814 3.828875 TGTTTGTGGATTTTGAACCCC 57.171 42.857 0.00 0.00 0.00 4.95
793 815 4.514816 CCAATGTTTGTGGATTTTGAACCC 59.485 41.667 0.00 0.00 38.54 4.11
794 816 4.514816 CCCAATGTTTGTGGATTTTGAACC 59.485 41.667 0.00 0.00 38.54 3.62
795 817 4.024133 GCCCAATGTTTGTGGATTTTGAAC 60.024 41.667 0.00 0.00 38.54 3.18
831 853 2.932614 CCTTCTTCTGCTTGTATGGTCG 59.067 50.000 0.00 0.00 0.00 4.79
844 866 2.708325 GGGCCTGATATCACCTTCTTCT 59.292 50.000 0.84 0.00 0.00 2.85
845 867 2.548920 CGGGCCTGATATCACCTTCTTC 60.549 54.545 5.28 0.00 0.00 2.87
846 868 1.417890 CGGGCCTGATATCACCTTCTT 59.582 52.381 5.28 0.00 0.00 2.52
847 869 1.051812 CGGGCCTGATATCACCTTCT 58.948 55.000 5.28 0.00 0.00 2.85
848 870 1.048601 TCGGGCCTGATATCACCTTC 58.951 55.000 11.27 0.00 0.00 3.46
849 871 0.759346 GTCGGGCCTGATATCACCTT 59.241 55.000 19.55 0.00 0.00 3.50
850 872 1.122019 GGTCGGGCCTGATATCACCT 61.122 60.000 19.55 0.00 0.00 4.00
911 937 1.409427 CTTCCTGGGCTCGTACCTAAG 59.591 57.143 0.00 0.00 0.00 2.18
1588 1717 3.582647 TGCCTGTTCTGTTCCTCTATTGA 59.417 43.478 0.00 0.00 0.00 2.57
1752 1881 5.936956 TGTTTTGACCAGAAATTTTGCAAGT 59.063 32.000 0.00 0.00 0.00 3.16
1766 1895 2.107378 TGTGGCCTCTATGTTTTGACCA 59.893 45.455 3.32 0.00 0.00 4.02
1927 2059 5.061179 TCTAACCCAAACTCTAGCAACAAC 58.939 41.667 0.00 0.00 0.00 3.32
2057 2189 7.785033 ACTGGAACTTCTCAAATGAAATTGTT 58.215 30.769 0.00 0.00 36.10 2.83
2099 2231 5.726308 TCAGGGTTGAGATTCTTAAGGATGA 59.274 40.000 0.00 0.00 0.00 2.92
2197 2329 8.539674 GTTCGTATTTCTCAAAGCAAAAACAAT 58.460 29.630 0.00 0.00 0.00 2.71
2852 2984 6.990349 CCTACTCTGAACTAAAACCAGAACAA 59.010 38.462 0.00 0.00 36.61 2.83
2905 4651 7.499438 TTAAATTTATGTTCATTTCGTGGCG 57.501 32.000 0.00 0.00 0.00 5.69
3068 4814 7.371159 TGATCCTATCGAGTCAATGTACATTC 58.629 38.462 18.25 8.52 0.00 2.67
3414 5160 6.711277 TGAGATAGTGGAAAACATAAGCTGT 58.289 36.000 0.00 0.00 40.84 4.40
3648 5404 9.778741 TCAAAATAACCTGTAGATAGCCTATTG 57.221 33.333 0.00 0.00 0.00 1.90
3689 5447 9.770097 TTTATCTCATGTCCATCAGATTAAGTC 57.230 33.333 0.00 0.00 0.00 3.01
3909 5667 7.934457 ACATCAAGCCTGAAAATATGACATAC 58.066 34.615 0.00 0.00 34.49 2.39
3959 5717 9.991906 AAATGATCTTCAGAAATTCACATGTTT 57.008 25.926 0.00 0.00 0.00 2.83
3982 5740 6.870439 GGTTGCTTTGCTCTGAGAATTTAAAT 59.130 34.615 9.28 0.00 0.00 1.40
4187 5958 7.148035 TGGACAGGTACTTAAAACAAAAGGAAC 60.148 37.037 0.00 0.00 34.60 3.62
4188 5959 6.890814 TGGACAGGTACTTAAAACAAAAGGAA 59.109 34.615 0.00 0.00 34.60 3.36
4189 5960 6.424883 TGGACAGGTACTTAAAACAAAAGGA 58.575 36.000 0.00 0.00 34.60 3.36
4190 5961 6.544564 TCTGGACAGGTACTTAAAACAAAAGG 59.455 38.462 0.00 0.00 34.60 3.11
4191 5962 7.562454 TCTGGACAGGTACTTAAAACAAAAG 57.438 36.000 0.00 0.00 34.60 2.27
4192 5963 7.996644 AGATCTGGACAGGTACTTAAAACAAAA 59.003 33.333 0.00 0.00 34.60 2.44
4193 5964 7.514721 AGATCTGGACAGGTACTTAAAACAAA 58.485 34.615 0.00 0.00 34.60 2.83
4194 5965 7.016268 AGAGATCTGGACAGGTACTTAAAACAA 59.984 37.037 0.00 0.00 34.60 2.83
4195 5966 6.497259 AGAGATCTGGACAGGTACTTAAAACA 59.503 38.462 0.00 0.00 34.60 2.83
4196 5967 6.937392 AGAGATCTGGACAGGTACTTAAAAC 58.063 40.000 0.00 0.00 34.60 2.43
4197 5968 7.554959 AAGAGATCTGGACAGGTACTTAAAA 57.445 36.000 0.00 0.00 34.60 1.52
4245 6016 1.139058 AGGCTGTTCTATAACCTGCGG 59.861 52.381 0.00 0.00 35.92 5.69
4286 6057 8.492748 CAACATTTGAGACAGGATTTTTCAATG 58.507 33.333 0.00 0.00 0.00 2.82
4291 6062 6.877236 ACACAACATTTGAGACAGGATTTTT 58.123 32.000 0.00 0.00 0.00 1.94
4334 6113 0.317436 TTGCGGTAAAAGCAGCAACG 60.317 50.000 0.00 0.00 46.01 4.10
4349 6128 5.576447 AGGGGACAAACTTATAATTTGCG 57.424 39.130 14.82 3.43 40.10 4.85
4600 6426 6.703607 GGAGATCACGTCACAAGATTATCAAT 59.296 38.462 0.00 0.00 0.00 2.57
4647 6484 6.017852 CCAGAGGATTCTCGCTTAAAATAACC 60.018 42.308 0.00 0.00 44.47 2.85
4672 6509 6.374565 TTTAGCTACTCCGTTCTAGTCATC 57.625 41.667 0.00 0.00 0.00 2.92
4695 6536 0.818040 GGGCCGTGTGTTCTCTGTTT 60.818 55.000 0.00 0.00 0.00 2.83
4697 6538 2.383245 CTGGGCCGTGTGTTCTCTGT 62.383 60.000 0.00 0.00 0.00 3.41
4698 6539 1.669115 CTGGGCCGTGTGTTCTCTG 60.669 63.158 0.00 0.00 0.00 3.35
4809 6959 1.148310 CATGAGACGAACACCACCAC 58.852 55.000 0.00 0.00 0.00 4.16
4827 6977 2.363018 CAGCCTCTCCCGTCTCCA 60.363 66.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.