Multiple sequence alignment - TraesCS3D01G262300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G262300 chr3D 100.000 7287 0 0 1 7287 363862201 363869487 0.000000e+00 13457.0
1 TraesCS3D01G262300 chr3D 84.572 1076 98 28 973 2036 363855653 363856672 0.000000e+00 1005.0
2 TraesCS3D01G262300 chr3D 83.461 913 93 24 973 1871 363605518 363604650 0.000000e+00 797.0
3 TraesCS3D01G262300 chr3D 76.276 333 68 11 5827 6152 17843189 17843517 4.520000e-37 167.0
4 TraesCS3D01G262300 chr3D 93.478 46 3 0 2562 2607 445343006 445343051 1.310000e-07 69.4
5 TraesCS3D01G262300 chr3D 88.679 53 5 1 2562 2613 582796907 582796855 6.100000e-06 63.9
6 TraesCS3D01G262300 chr3B 94.063 2594 91 28 4740 7287 474026797 474029373 0.000000e+00 3879.0
7 TraesCS3D01G262300 chr3B 91.015 1636 94 15 325 1930 474022447 474024059 0.000000e+00 2158.0
8 TraesCS3D01G262300 chr3B 94.042 1242 54 14 3516 4745 474025529 474026762 0.000000e+00 1866.0
9 TraesCS3D01G262300 chr3B 83.440 936 91 28 973 1886 473708121 473707228 0.000000e+00 811.0
10 TraesCS3D01G262300 chr3B 90.372 592 34 11 1980 2563 474024060 474024636 0.000000e+00 756.0
11 TraesCS3D01G262300 chr3B 94.019 418 17 3 3108 3518 474025068 474025484 1.730000e-175 627.0
12 TraesCS3D01G262300 chr3B 91.335 427 29 3 2610 3035 474024637 474025056 1.760000e-160 577.0
13 TraesCS3D01G262300 chr3B 92.262 168 13 0 3805 3972 68913638 68913471 9.450000e-59 239.0
14 TraesCS3D01G262300 chr3B 91.860 172 13 1 3802 3972 552226404 552226575 9.450000e-59 239.0
15 TraesCS3D01G262300 chr3A 94.326 2062 70 28 5246 7287 485010538 485012572 0.000000e+00 3116.0
16 TraesCS3D01G262300 chr3A 90.098 2040 124 26 587 2566 485005795 485007816 0.000000e+00 2577.0
17 TraesCS3D01G262300 chr3A 84.261 934 96 21 973 1891 484653484 484652587 0.000000e+00 863.0
18 TraesCS3D01G262300 chr3A 86.745 762 54 22 2607 3330 485007828 485008580 0.000000e+00 804.0
19 TraesCS3D01G262300 chr3A 93.159 497 32 2 2 496 485004889 485005385 0.000000e+00 728.0
20 TraesCS3D01G262300 chr3A 93.617 329 6 6 4926 5241 485010241 485010567 1.840000e-130 477.0
21 TraesCS3D01G262300 chr3A 80.838 167 18 8 2984 3137 485009455 485009620 1.280000e-22 119.0
22 TraesCS3D01G262300 chr3A 87.234 94 12 0 3367 3460 485008655 485008748 2.780000e-19 108.0
23 TraesCS3D01G262300 chr3A 91.667 48 4 0 2562 2609 154987787 154987740 4.720000e-07 67.6
24 TraesCS3D01G262300 chr1B 88.496 452 45 5 5278 5724 626687799 626688248 2.310000e-149 540.0
25 TraesCS3D01G262300 chr1B 76.327 245 38 11 4923 5160 626687559 626687790 5.980000e-21 113.0
26 TraesCS3D01G262300 chr1A 87.611 452 49 5 5278 5724 549711963 549712412 1.080000e-142 518.0
27 TraesCS3D01G262300 chr1A 83.030 330 53 3 5827 6154 549712407 549712735 5.530000e-76 296.0
28 TraesCS3D01G262300 chr1A 78.333 180 30 6 4987 5160 549711778 549711954 2.780000e-19 108.0
29 TraesCS3D01G262300 chr1D 86.726 452 53 5 5278 5724 457073920 457074369 5.080000e-136 496.0
30 TraesCS3D01G262300 chr1D 83.434 332 53 2 5827 6157 457074364 457074694 2.550000e-79 307.0
31 TraesCS3D01G262300 chr1D 76.327 245 38 11 4923 5160 457073680 457073911 5.980000e-21 113.0
32 TraesCS3D01G262300 chr4A 93.293 164 8 2 3805 3967 469243057 469242896 9.450000e-59 239.0
33 TraesCS3D01G262300 chr4A 92.727 165 11 1 3805 3968 150653474 150653310 3.400000e-58 237.0
34 TraesCS3D01G262300 chr4A 87.500 88 11 0 5576 5663 54107584 54107497 1.290000e-17 102.0
35 TraesCS3D01G262300 chr6D 92.262 168 12 1 3799 3965 351233429 351233596 3.400000e-58 237.0
36 TraesCS3D01G262300 chr2A 92.727 165 11 1 3805 3968 655039118 655039282 3.400000e-58 237.0
37 TraesCS3D01G262300 chr2A 88.462 52 6 0 2562 2613 465553017 465552966 6.100000e-06 63.9
38 TraesCS3D01G262300 chr7B 92.169 166 12 1 3804 3969 428829374 428829538 4.400000e-57 233.0
39 TraesCS3D01G262300 chr4D 92.593 162 11 1 3805 3965 75266748 75266909 1.580000e-56 231.0
40 TraesCS3D01G262300 chr4D 85.714 119 17 0 5827 5945 401077119 401077001 7.670000e-25 126.0
41 TraesCS3D01G262300 chr4D 87.500 88 11 0 5576 5663 397094710 397094623 1.290000e-17 102.0
42 TraesCS3D01G262300 chrUn 76.855 337 57 17 5827 6151 37382207 37381880 3.500000e-38 171.0
43 TraesCS3D01G262300 chrUn 100.000 35 0 0 2531 2565 267213660 267213694 1.700000e-06 65.8
44 TraesCS3D01G262300 chr5B 82.394 142 25 0 5827 5968 79804893 79804752 2.760000e-24 124.0
45 TraesCS3D01G262300 chr5D 81.690 142 26 0 5827 5968 72902404 72902263 1.280000e-22 119.0
46 TraesCS3D01G262300 chr4B 87.500 88 11 0 5576 5663 489088535 489088448 1.290000e-17 102.0
47 TraesCS3D01G262300 chr4B 90.196 51 5 0 2559 2609 25419516 25419566 4.720000e-07 67.6
48 TraesCS3D01G262300 chr7D 91.837 49 4 0 2562 2610 168427445 168427493 1.310000e-07 69.4
49 TraesCS3D01G262300 chr7D 91.667 48 4 0 2562 2609 115247286 115247239 4.720000e-07 67.6
50 TraesCS3D01G262300 chr6A 90.196 51 4 1 2562 2611 91374906 91374956 1.700000e-06 65.8
51 TraesCS3D01G262300 chr7A 95.000 40 2 0 2531 2570 379030484 379030523 6.100000e-06 63.9
52 TraesCS3D01G262300 chr6B 88.679 53 5 1 2562 2613 315650252 315650200 6.100000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G262300 chr3D 363862201 363869487 7286 False 13457.000000 13457 100.000000 1 7287 1 chr3D.!!$F3 7286
1 TraesCS3D01G262300 chr3D 363855653 363856672 1019 False 1005.000000 1005 84.572000 973 2036 1 chr3D.!!$F2 1063
2 TraesCS3D01G262300 chr3D 363604650 363605518 868 True 797.000000 797 83.461000 973 1871 1 chr3D.!!$R1 898
3 TraesCS3D01G262300 chr3B 474022447 474029373 6926 False 1643.833333 3879 92.474333 325 7287 6 chr3B.!!$F2 6962
4 TraesCS3D01G262300 chr3B 473707228 473708121 893 True 811.000000 811 83.440000 973 1886 1 chr3B.!!$R2 913
5 TraesCS3D01G262300 chr3A 485004889 485012572 7683 False 1132.714286 3116 89.431000 2 7287 7 chr3A.!!$F1 7285
6 TraesCS3D01G262300 chr3A 484652587 484653484 897 True 863.000000 863 84.261000 973 1891 1 chr3A.!!$R2 918
7 TraesCS3D01G262300 chr1B 626687559 626688248 689 False 326.500000 540 82.411500 4923 5724 2 chr1B.!!$F1 801
8 TraesCS3D01G262300 chr1A 549711778 549712735 957 False 307.333333 518 82.991333 4987 6154 3 chr1A.!!$F1 1167
9 TraesCS3D01G262300 chr1D 457073680 457074694 1014 False 305.333333 496 82.162333 4923 6157 3 chr1D.!!$F1 1234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 301 0.396060 GAGGATGATGAGAGCCCCAC 59.604 60.0 0.00 0.00 0.00 4.61 F
638 962 0.905357 GAGAGTGTGCATACCCACCT 59.095 55.0 10.29 2.79 34.85 4.00 F
1531 1920 0.465460 GGTCACCTGCAGAACAACCA 60.465 55.0 17.39 0.00 0.00 3.67 F
2889 3313 0.039618 TGGGCCACCTCCAAAATCTC 59.960 55.0 0.00 0.00 37.76 2.75 F
3091 3516 0.110295 TCAGCCCTAGTGCAAAGCAA 59.890 50.0 0.00 0.00 41.47 3.91 F
4666 5400 0.577269 CGCTGCTTACGCCTGTATTC 59.423 55.0 0.00 0.00 34.43 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1915 0.600057 GGCAGGCTCTTCTTTGGTTG 59.400 55.000 0.00 0.00 0.00 3.77 R
1957 2352 0.674895 GCAAACGAGGATCCAGCACT 60.675 55.000 15.82 0.00 0.00 4.40 R
3071 3496 0.110295 TGCTTTGCACTAGGGCTGAA 59.890 50.000 19.73 11.97 31.71 3.02 R
4816 5590 0.895100 GGCCTGCAGGTGAATCACAA 60.895 55.000 32.81 0.00 35.86 3.33 R
4915 5710 1.060698 GCGAATGAACAAGACGGCTAC 59.939 52.381 0.00 0.00 0.00 3.58 R
6364 7204 0.030908 AAGAATCGTCGGATCGCTCC 59.969 55.000 0.00 0.00 38.29 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 1.826720 AGCCGCATCACATCCATTTTT 59.173 42.857 0.00 0.00 0.00 1.94
78 80 3.576861 CACCATCCTAGAGACCACCATA 58.423 50.000 0.00 0.00 0.00 2.74
79 81 3.576118 CACCATCCTAGAGACCACCATAG 59.424 52.174 0.00 0.00 0.00 2.23
141 143 3.453868 TCCATCTCCTTCCATCAACTCA 58.546 45.455 0.00 0.00 0.00 3.41
259 261 3.385440 TACCGTGCCATCGTCGTCG 62.385 63.158 0.00 0.00 38.55 5.12
261 263 3.238241 CGTGCCATCGTCGTCGTC 61.238 66.667 1.33 0.00 38.33 4.20
294 296 1.070445 CAGTGGGAGGATGATGAGAGC 59.930 57.143 0.00 0.00 0.00 4.09
299 301 0.396060 GAGGATGATGAGAGCCCCAC 59.604 60.000 0.00 0.00 0.00 4.61
300 302 1.059006 AGGATGATGAGAGCCCCACC 61.059 60.000 0.00 0.00 0.00 4.61
320 322 3.181465 ACCGATGTCATCCACCATAAGTC 60.181 47.826 7.25 0.00 0.00 3.01
328 330 3.713826 TCCACCATAAGTCCAAAGACC 57.286 47.619 0.00 0.00 44.72 3.85
344 346 2.330216 AGACCAGGTAGAGCTTGTGTT 58.670 47.619 0.00 0.00 0.00 3.32
367 369 1.737793 CACCATTTACCACGAGGCTTC 59.262 52.381 0.00 0.00 39.06 3.86
392 394 2.040412 AGGTGGCTAGGGTTGAAAGAAG 59.960 50.000 0.00 0.00 0.00 2.85
406 408 1.476477 AAGAAGGAGTAGAGGCGACC 58.524 55.000 0.00 0.00 0.00 4.79
484 487 8.934023 TGGAAGTTTATTAGAACCATTTGAGT 57.066 30.769 0.00 0.00 0.00 3.41
558 561 3.245048 CGTAATCATGACAGCGTTGCATA 59.755 43.478 0.00 0.00 0.00 3.14
590 912 3.425659 AGAGAAAATGGAAAGGTCAGGC 58.574 45.455 0.00 0.00 0.00 4.85
638 962 0.905357 GAGAGTGTGCATACCCACCT 59.095 55.000 10.29 2.79 34.85 4.00
745 1069 3.535561 CACGAGCATATTTCCTTGGACT 58.464 45.455 0.00 0.00 0.00 3.85
842 1174 4.030452 GTCGCAACTGCCACAGCC 62.030 66.667 0.00 0.00 38.69 4.85
843 1175 4.254709 TCGCAACTGCCACAGCCT 62.255 61.111 0.00 0.00 38.69 4.58
848 1185 3.850098 AACTGCCACAGCCTTCCCG 62.850 63.158 0.00 0.00 38.69 5.14
970 1320 3.937062 CGCGCATAAACCGGCCTC 61.937 66.667 8.75 0.00 0.00 4.70
1013 1371 4.201122 GGCCATGCCTCCCCTCTG 62.201 72.222 0.00 0.00 46.69 3.35
1146 1519 1.757699 GATCTCACTGTCCAGTACCCC 59.242 57.143 0.00 0.00 40.20 4.95
1219 1596 2.646862 CGTCGTACTGCGGCTACG 60.647 66.667 13.64 13.64 44.09 3.51
1524 1913 3.241530 AAGCCGGTCACCTGCAGA 61.242 61.111 17.39 0.00 36.19 4.26
1526 1915 3.050275 GCCGGTCACCTGCAGAAC 61.050 66.667 17.39 10.20 33.90 3.01
1527 1916 2.425592 CCGGTCACCTGCAGAACA 59.574 61.111 17.39 0.00 0.00 3.18
1528 1917 1.227823 CCGGTCACCTGCAGAACAA 60.228 57.895 17.39 0.00 0.00 2.83
1531 1920 0.465460 GGTCACCTGCAGAACAACCA 60.465 55.000 17.39 0.00 0.00 3.67
1532 1921 1.388547 GTCACCTGCAGAACAACCAA 58.611 50.000 17.39 0.00 0.00 3.67
1863 2258 1.233285 CCGGCTGCAGCAAGATATCC 61.233 60.000 37.63 18.00 44.36 2.59
1941 2336 2.183478 TCAGTGACCGAGTACCGTAA 57.817 50.000 0.00 0.00 36.31 3.18
1943 2338 2.884012 TCAGTGACCGAGTACCGTAAAA 59.116 45.455 0.00 0.00 36.31 1.52
1957 2352 9.807649 GAGTACCGTAAAAACCATCTAATCTTA 57.192 33.333 0.00 0.00 0.00 2.10
1964 2359 7.396540 AAAAACCATCTAATCTTAGTGCTGG 57.603 36.000 11.16 11.16 34.81 4.85
1971 2368 3.742433 AATCTTAGTGCTGGATCCTCG 57.258 47.619 14.23 5.26 0.00 4.63
1977 2374 1.741401 TGCTGGATCCTCGTTTGCG 60.741 57.895 14.23 0.00 39.92 4.85
2085 2485 9.662947 CATAATTGAAGTCATCATAGGCTCATA 57.337 33.333 0.00 0.00 38.03 2.15
2129 2529 3.641436 ACTCATAACCTGACGGATGCATA 59.359 43.478 0.00 0.00 0.00 3.14
2130 2530 4.240888 CTCATAACCTGACGGATGCATAG 58.759 47.826 0.00 0.00 0.00 2.23
2173 2573 9.737427 TTAGAATTTTCAGCGTATGTTTTTCAA 57.263 25.926 0.00 0.00 0.00 2.69
2217 2617 4.134563 GTGTGAAAGGAACCAAAGCTCTA 58.865 43.478 0.00 0.00 0.00 2.43
2237 2637 6.515200 GCTCTACCTGGAAAAAGAAAGGAAAC 60.515 42.308 0.00 0.00 33.78 2.78
2296 2700 3.412386 ACCTTCTTTTCCATCCGACAAG 58.588 45.455 0.00 0.00 30.70 3.16
2406 2816 1.409412 GTCGATCGCGTATGCTTCAT 58.591 50.000 11.09 0.00 39.65 2.57
2408 2818 1.786579 TCGATCGCGTATGCTTCATTG 59.213 47.619 11.09 0.00 39.65 2.82
2431 2841 1.366854 GGCTACGCGGGGAAGAAAAG 61.367 60.000 12.47 0.00 0.00 2.27
2441 2852 3.669557 CGGGGAAGAAAAGTTAATGCACG 60.670 47.826 0.00 0.00 0.00 5.34
2468 2879 1.410517 CAGCTACATCCATGGACTCGT 59.589 52.381 18.99 16.80 0.00 4.18
2478 2889 0.599558 ATGGACTCGTTCGTTCCGAA 59.400 50.000 0.00 0.00 43.75 4.30
2502 2913 3.934068 ACAAAATCGTCTCCGGTTATGT 58.066 40.909 0.00 0.00 36.09 2.29
2568 2984 7.813148 CGACATTTATTATGGATCGAAGGTAGT 59.187 37.037 0.00 0.00 0.00 2.73
2577 2993 9.976511 TTATGGATCGAAGGTAGTATAAAGTTG 57.023 33.333 0.00 0.00 0.00 3.16
2578 2994 7.649533 TGGATCGAAGGTAGTATAAAGTTGA 57.350 36.000 0.00 0.00 0.00 3.18
2579 2995 7.713750 TGGATCGAAGGTAGTATAAAGTTGAG 58.286 38.462 0.00 0.00 0.00 3.02
2580 2996 7.341256 TGGATCGAAGGTAGTATAAAGTTGAGT 59.659 37.037 0.00 0.00 0.00 3.41
2581 2997 7.861872 GGATCGAAGGTAGTATAAAGTTGAGTC 59.138 40.741 0.00 0.00 0.00 3.36
2582 2998 7.692460 TCGAAGGTAGTATAAAGTTGAGTCA 57.308 36.000 0.00 0.00 0.00 3.41
2583 2999 7.533426 TCGAAGGTAGTATAAAGTTGAGTCAC 58.467 38.462 0.00 0.00 0.00 3.67
2584 3000 7.392673 TCGAAGGTAGTATAAAGTTGAGTCACT 59.607 37.037 0.00 0.00 0.00 3.41
2585 3001 8.027771 CGAAGGTAGTATAAAGTTGAGTCACTT 58.972 37.037 0.00 0.00 38.74 3.16
2596 3012 6.300354 AGTTGAGTCACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
2597 3013 5.238650 AGTTGAGTCACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
2598 3014 4.963373 TGAGTCACTTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
2599 3015 4.994852 TGAGTCACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2601 3017 4.755123 AGTCACTTATTTTGGAACGGAGTG 59.245 41.667 0.00 0.00 45.00 3.51
2602 3018 4.069304 TCACTTATTTTGGAACGGAGTGG 58.931 43.478 0.00 0.00 45.00 4.00
2603 3019 3.190535 CACTTATTTTGGAACGGAGTGGG 59.809 47.826 0.00 0.00 45.00 4.61
2604 3020 3.181437 ACTTATTTTGGAACGGAGTGGGT 60.181 43.478 0.00 0.00 45.00 4.51
2605 3021 4.041938 ACTTATTTTGGAACGGAGTGGGTA 59.958 41.667 0.00 0.00 45.00 3.69
2611 3027 4.637387 TGGAACGGAGTGGGTATTTTTA 57.363 40.909 0.00 0.00 45.00 1.52
2666 3083 0.766131 TCCCGGCAAGAGTTAACCAA 59.234 50.000 0.88 0.00 0.00 3.67
2761 3179 3.058914 GTCGACATCCTTTCACACTTTGG 60.059 47.826 11.55 0.00 0.00 3.28
2789 3213 6.127980 ACAGAAGAAGAGATGCACATTCATTG 60.128 38.462 0.00 0.00 0.00 2.82
2876 3300 1.993653 CAACCTGAGATCTGGGCCA 59.006 57.895 5.85 5.85 39.04 5.36
2889 3313 0.039618 TGGGCCACCTCCAAAATCTC 59.960 55.000 0.00 0.00 37.76 2.75
2904 3328 8.585471 TCCAAAATCTCTGCAAATCTTCTATT 57.415 30.769 0.00 0.00 0.00 1.73
2905 3329 9.685276 TCCAAAATCTCTGCAAATCTTCTATTA 57.315 29.630 0.00 0.00 0.00 0.98
2906 3330 9.947669 CCAAAATCTCTGCAAATCTTCTATTAG 57.052 33.333 0.00 0.00 0.00 1.73
2955 3379 4.545208 TGGACCATCAACGTCTGATTTA 57.455 40.909 9.56 0.00 42.46 1.40
2956 3380 4.503910 TGGACCATCAACGTCTGATTTAG 58.496 43.478 9.56 5.91 42.46 1.85
2978 3402 1.474879 CAATTCGGGGGCGTGTTATTT 59.525 47.619 0.00 0.00 0.00 1.40
3003 3428 7.833285 AGCTTTTTATCTTTTGACCTAACCA 57.167 32.000 0.00 0.00 0.00 3.67
3008 3433 8.754991 TTTTATCTTTTGACCTAACCAAGACA 57.245 30.769 0.00 0.00 0.00 3.41
3009 3434 8.754991 TTTATCTTTTGACCTAACCAAGACAA 57.245 30.769 0.00 0.00 0.00 3.18
3035 3460 1.003118 GATGGTGTGAGTTGGTGGCTA 59.997 52.381 0.00 0.00 0.00 3.93
3039 3464 2.890945 GGTGTGAGTTGGTGGCTAAAAT 59.109 45.455 0.00 0.00 0.00 1.82
3052 3477 3.190535 TGGCTAAAATTTTGCTCCGTCTC 59.809 43.478 13.76 2.36 0.00 3.36
3053 3478 3.190535 GGCTAAAATTTTGCTCCGTCTCA 59.809 43.478 13.76 0.00 0.00 3.27
3055 3480 5.065988 GGCTAAAATTTTGCTCCGTCTCATA 59.934 40.000 13.76 0.00 0.00 2.15
3056 3481 6.238759 GGCTAAAATTTTGCTCCGTCTCATAT 60.239 38.462 13.76 0.00 0.00 1.78
3057 3482 7.196331 GCTAAAATTTTGCTCCGTCTCATATT 58.804 34.615 13.76 0.00 0.00 1.28
3058 3483 7.702348 GCTAAAATTTTGCTCCGTCTCATATTT 59.298 33.333 13.76 0.00 0.00 1.40
3060 3485 6.515272 AATTTTGCTCCGTCTCATATTTGT 57.485 33.333 0.00 0.00 0.00 2.83
3061 3486 4.944962 TTTGCTCCGTCTCATATTTGTG 57.055 40.909 0.00 0.00 0.00 3.33
3062 3487 2.905075 TGCTCCGTCTCATATTTGTGG 58.095 47.619 0.00 0.00 0.00 4.17
3063 3488 2.213499 GCTCCGTCTCATATTTGTGGG 58.787 52.381 0.00 0.00 0.00 4.61
3064 3489 2.838736 CTCCGTCTCATATTTGTGGGG 58.161 52.381 0.00 0.00 0.00 4.96
3067 3492 3.458118 TCCGTCTCATATTTGTGGGGAAT 59.542 43.478 0.00 0.00 0.00 3.01
3071 3496 6.490040 CCGTCTCATATTTGTGGGGAATAATT 59.510 38.462 0.00 0.00 0.00 1.40
3072 3497 7.014230 CCGTCTCATATTTGTGGGGAATAATTT 59.986 37.037 0.00 0.00 0.00 1.82
3073 3498 8.076178 CGTCTCATATTTGTGGGGAATAATTTC 58.924 37.037 0.00 0.00 0.00 2.17
3074 3499 8.912988 GTCTCATATTTGTGGGGAATAATTTCA 58.087 33.333 0.00 0.00 33.23 2.69
3075 3500 9.135189 TCTCATATTTGTGGGGAATAATTTCAG 57.865 33.333 0.00 0.00 33.23 3.02
3078 3503 2.745968 TGTGGGGAATAATTTCAGCCC 58.254 47.619 0.00 0.00 35.16 5.19
3079 3504 2.314549 TGTGGGGAATAATTTCAGCCCT 59.685 45.455 0.00 0.00 38.84 5.19
3081 3506 4.145052 GTGGGGAATAATTTCAGCCCTAG 58.855 47.826 0.00 0.00 38.84 3.02
3082 3507 3.791545 TGGGGAATAATTTCAGCCCTAGT 59.208 43.478 0.00 0.00 38.84 2.57
3083 3508 4.145052 GGGGAATAATTTCAGCCCTAGTG 58.855 47.826 0.00 0.00 38.84 2.74
3084 3509 3.570125 GGGAATAATTTCAGCCCTAGTGC 59.430 47.826 0.00 0.00 35.86 4.40
3088 3513 5.841957 ATAATTTCAGCCCTAGTGCAAAG 57.158 39.130 0.00 0.00 0.00 2.77
3091 3516 0.110295 TCAGCCCTAGTGCAAAGCAA 59.890 50.000 0.00 0.00 41.47 3.91
3092 3517 0.961019 CAGCCCTAGTGCAAAGCAAA 59.039 50.000 0.00 0.00 41.47 3.68
3093 3518 1.547372 CAGCCCTAGTGCAAAGCAAAT 59.453 47.619 0.00 0.00 41.47 2.32
3094 3519 2.028748 CAGCCCTAGTGCAAAGCAAATT 60.029 45.455 0.00 0.00 41.47 1.82
3095 3520 2.232208 AGCCCTAGTGCAAAGCAAATTC 59.768 45.455 0.00 0.00 41.47 2.17
3096 3521 2.232208 GCCCTAGTGCAAAGCAAATTCT 59.768 45.455 0.00 0.00 41.47 2.40
3097 3522 3.443681 GCCCTAGTGCAAAGCAAATTCTA 59.556 43.478 0.00 0.00 41.47 2.10
3098 3523 4.082245 GCCCTAGTGCAAAGCAAATTCTAA 60.082 41.667 0.00 0.00 41.47 2.10
3148 3582 5.571784 TTAGCCTTTGATTCTGAATGCTG 57.428 39.130 17.48 3.51 30.95 4.41
3175 3609 9.716531 TTTCAGATGTCATGGTCAGATAATATC 57.283 33.333 0.00 0.00 0.00 1.63
3211 3648 6.379703 TGAGGGAAATCTTTTCAGTGTTTCAA 59.620 34.615 2.74 0.00 32.24 2.69
3272 3721 1.009078 TCTTTTCTGATGCCGATGCG 58.991 50.000 0.00 0.00 41.78 4.73
3297 3746 8.665685 CGCTACCTAAAGTTATCTTTCATGTTT 58.334 33.333 2.03 0.00 42.13 2.83
3526 4131 8.148999 TGTCTTTTAACCTAACCTCTCTCTTTC 58.851 37.037 0.00 0.00 0.00 2.62
3543 4148 6.242396 TCTCTTTCGTGGGGAATAAATTGAA 58.758 36.000 0.00 0.00 33.85 2.69
4124 4846 9.751542 AGGTCGTTATTCATAGATAGTGAAAAG 57.248 33.333 0.00 0.00 38.89 2.27
4138 4860 9.429359 AGATAGTGAAAAGCTATAAATCCATCG 57.571 33.333 0.00 0.00 30.09 3.84
4155 4877 3.066064 CCATCGTTTCGATTATGGCCAAA 59.934 43.478 10.96 6.13 44.59 3.28
4180 4903 7.658261 AGTTTCCTGGCTTTAAAGAATAACAC 58.342 34.615 19.48 6.54 0.00 3.32
4220 4944 1.538047 TGCAAGACAGGCATTCTTCC 58.462 50.000 0.00 0.00 36.11 3.46
4267 4992 4.394920 TGAGAAAAACAGAGTGTTGTCCAC 59.605 41.667 0.00 0.00 40.14 4.02
4302 5027 1.210931 CCCATGCTGCGTCTTTGTG 59.789 57.895 0.00 0.00 0.00 3.33
4305 5030 0.587768 CATGCTGCGTCTTTGTGTCA 59.412 50.000 0.00 0.00 0.00 3.58
4307 5032 2.162319 TGCTGCGTCTTTGTGTCATA 57.838 45.000 0.00 0.00 0.00 2.15
4308 5033 2.698803 TGCTGCGTCTTTGTGTCATAT 58.301 42.857 0.00 0.00 0.00 1.78
4310 5035 2.672874 GCTGCGTCTTTGTGTCATATCA 59.327 45.455 0.00 0.00 0.00 2.15
4463 5190 5.299028 TGTGCTTGTTAATCTTTCTTGCAGA 59.701 36.000 0.00 0.00 0.00 4.26
4477 5204 4.836825 TCTTGCAGAATCGAAGAGGAAAT 58.163 39.130 0.00 0.00 43.63 2.17
4538 5272 5.767665 TCACTTACCAATACACATGCAGTTT 59.232 36.000 0.00 0.00 0.00 2.66
4550 5284 4.624024 CACATGCAGTTTATTTCTTGCCTG 59.376 41.667 0.00 0.00 0.00 4.85
4654 5388 3.117171 CTCTTGCGCTCGCTGCTT 61.117 61.111 9.73 0.00 42.51 3.91
4666 5400 0.577269 CGCTGCTTACGCCTGTATTC 59.423 55.000 0.00 0.00 34.43 1.75
4697 5431 6.306596 GCACTCTTTGATTTAGCTGCTAAAAC 59.693 38.462 31.50 28.67 39.03 2.43
4733 5467 4.206375 TGCTCTTTTCACCACTTCAATCA 58.794 39.130 0.00 0.00 0.00 2.57
4737 5471 6.564709 TCTTTTCACCACTTCAATCATCAG 57.435 37.500 0.00 0.00 0.00 2.90
4757 5531 3.065786 CAGCCTATGCAATGGTTACAGTG 59.934 47.826 9.61 0.00 44.99 3.66
4769 5543 6.603940 ATGGTTACAGTGCACCAAATATTT 57.396 33.333 14.63 0.00 46.29 1.40
4792 5566 7.657023 TTATACTAGAAGAAACTGGGGAGAC 57.343 40.000 0.00 0.00 0.00 3.36
4794 5568 2.011122 AGAAGAAACTGGGGAGACGA 57.989 50.000 0.00 0.00 0.00 4.20
4840 5632 2.776370 ATTCACCTGCAGGCCCTGTG 62.776 60.000 33.06 22.13 39.32 3.66
4876 5668 4.487714 TCTTCATTCGCTATTCCAGGTT 57.512 40.909 0.00 0.00 0.00 3.50
4877 5669 4.442706 TCTTCATTCGCTATTCCAGGTTC 58.557 43.478 0.00 0.00 0.00 3.62
4900 5695 2.047655 CCGGTGCCGCAGTCTTTA 60.048 61.111 4.91 0.00 38.24 1.85
4913 5708 1.740025 AGTCTTTATTGCTCTTGCCGC 59.260 47.619 0.00 0.00 38.71 6.53
4914 5709 1.740025 GTCTTTATTGCTCTTGCCGCT 59.260 47.619 0.00 0.00 38.71 5.52
4915 5710 1.739466 TCTTTATTGCTCTTGCCGCTG 59.261 47.619 0.00 0.00 38.71 5.18
4921 5716 2.887568 CTCTTGCCGCTGTAGCCG 60.888 66.667 0.00 0.00 37.91 5.52
4956 5751 1.567357 AGAGAAGGCAGAGGAAGGTC 58.433 55.000 0.00 0.00 0.00 3.85
5179 5980 0.248825 TGCAACACGTGAAATGCACC 60.249 50.000 29.96 13.42 44.85 5.01
5227 6036 4.042062 TGGAGAACTGAACTTGATCATGGT 59.958 41.667 12.76 6.19 0.00 3.55
5228 6037 5.006386 GGAGAACTGAACTTGATCATGGTT 58.994 41.667 12.76 12.58 0.00 3.67
5229 6038 5.123027 GGAGAACTGAACTTGATCATGGTTC 59.877 44.000 23.66 23.66 39.54 3.62
5230 6039 5.624159 AGAACTGAACTTGATCATGGTTCA 58.376 37.500 27.65 27.65 44.35 3.18
5231 6040 6.243900 AGAACTGAACTTGATCATGGTTCAT 58.756 36.000 28.69 21.17 45.05 2.57
5232 6041 5.892160 ACTGAACTTGATCATGGTTCATG 57.108 39.130 28.69 24.88 45.05 3.07
5233 6042 4.703575 ACTGAACTTGATCATGGTTCATGG 59.296 41.667 28.69 23.42 45.05 3.66
5234 6043 4.018490 TGAACTTGATCATGGTTCATGGG 58.982 43.478 26.70 3.28 42.56 4.00
5235 6044 3.744940 ACTTGATCATGGTTCATGGGT 57.255 42.857 12.76 0.00 41.66 4.51
5236 6045 4.051661 ACTTGATCATGGTTCATGGGTT 57.948 40.909 12.76 0.00 41.66 4.11
5237 6046 5.191727 ACTTGATCATGGTTCATGGGTTA 57.808 39.130 12.76 0.00 41.66 2.85
5238 6047 4.949856 ACTTGATCATGGTTCATGGGTTAC 59.050 41.667 12.76 0.00 41.66 2.50
5239 6048 3.897239 TGATCATGGTTCATGGGTTACC 58.103 45.455 7.88 0.00 41.66 2.85
5240 6049 3.527253 TGATCATGGTTCATGGGTTACCT 59.473 43.478 0.00 0.00 41.66 3.08
5241 6050 3.644966 TCATGGTTCATGGGTTACCTC 57.355 47.619 0.00 0.00 41.66 3.85
5242 6051 3.189606 TCATGGTTCATGGGTTACCTCT 58.810 45.455 0.00 0.00 41.66 3.69
5243 6052 3.199946 TCATGGTTCATGGGTTACCTCTC 59.800 47.826 0.00 0.00 41.66 3.20
5244 6053 2.915869 TGGTTCATGGGTTACCTCTCT 58.084 47.619 0.00 0.00 37.76 3.10
5245 6054 2.838202 TGGTTCATGGGTTACCTCTCTC 59.162 50.000 0.00 0.00 37.76 3.20
5246 6055 3.108376 GGTTCATGGGTTACCTCTCTCT 58.892 50.000 0.00 0.00 37.76 3.10
5247 6056 3.118592 GGTTCATGGGTTACCTCTCTCTG 60.119 52.174 0.00 0.00 37.76 3.35
5248 6057 3.757947 TCATGGGTTACCTCTCTCTGA 57.242 47.619 0.00 0.00 37.76 3.27
5249 6058 3.366396 TCATGGGTTACCTCTCTCTGAC 58.634 50.000 0.00 0.00 37.76 3.51
5250 6059 3.011821 TCATGGGTTACCTCTCTCTGACT 59.988 47.826 0.00 0.00 37.76 3.41
5251 6060 3.544698 TGGGTTACCTCTCTCTGACTT 57.455 47.619 0.00 0.00 37.76 3.01
5252 6061 3.858135 TGGGTTACCTCTCTCTGACTTT 58.142 45.455 0.00 0.00 37.76 2.66
5253 6062 3.578716 TGGGTTACCTCTCTCTGACTTTG 59.421 47.826 0.00 0.00 37.76 2.77
5254 6063 3.833070 GGGTTACCTCTCTCTGACTTTGA 59.167 47.826 0.00 0.00 0.00 2.69
5255 6064 4.468153 GGGTTACCTCTCTCTGACTTTGAT 59.532 45.833 0.00 0.00 0.00 2.57
5256 6065 5.394773 GGGTTACCTCTCTCTGACTTTGATC 60.395 48.000 0.00 0.00 0.00 2.92
5257 6066 5.186021 GGTTACCTCTCTCTGACTTTGATCA 59.814 44.000 0.00 0.00 0.00 2.92
5258 6067 6.127196 GGTTACCTCTCTCTGACTTTGATCAT 60.127 42.308 0.00 0.00 0.00 2.45
5259 6068 5.341872 ACCTCTCTCTGACTTTGATCATG 57.658 43.478 0.00 0.00 0.00 3.07
5260 6069 4.161942 ACCTCTCTCTGACTTTGATCATGG 59.838 45.833 0.00 0.00 0.00 3.66
5422 6255 2.120718 ACCTCCAAGGAGAGCCGT 59.879 61.111 17.57 3.96 44.53 5.68
5762 6598 1.623811 ACTCCGGTGGATGGCATATAC 59.376 52.381 8.63 2.25 0.00 1.47
5796 6635 2.513753 CAGGAGCAATGTAACCAACCA 58.486 47.619 0.00 0.00 0.00 3.67
6290 7129 3.097614 CCTAACACCAGCCAGTAGTAGT 58.902 50.000 0.00 0.00 0.00 2.73
6291 7130 4.275810 CCTAACACCAGCCAGTAGTAGTA 58.724 47.826 0.00 0.00 0.00 1.82
6292 7131 4.338682 CCTAACACCAGCCAGTAGTAGTAG 59.661 50.000 0.00 0.00 0.00 2.57
6295 7134 5.126699 ACACCAGCCAGTAGTAGTAGTAT 57.873 43.478 0.00 0.00 0.00 2.12
6299 7138 6.207025 CACCAGCCAGTAGTAGTAGTATTAGG 59.793 46.154 0.00 0.00 0.00 2.69
6312 7151 4.530710 AGTATTAGGTCAGTGTTTGCGA 57.469 40.909 0.00 0.00 0.00 5.10
6327 7167 2.733671 GCGACCGGCCGAGTTTTAC 61.734 63.158 30.73 9.70 34.80 2.01
6364 7204 2.679837 AGATTTGCTTGCCGTGTATGAG 59.320 45.455 0.00 0.00 0.00 2.90
6415 7257 6.828273 CCCTTTCAGGTGATGTAAATATGTGA 59.172 38.462 0.00 0.00 31.93 3.58
6573 7415 0.543277 TGTCTATTCTGCAGCCCCAG 59.457 55.000 9.47 3.51 0.00 4.45
6878 7735 4.315803 CATGTTGAGACGTACCCTCTTTT 58.684 43.478 10.22 0.00 0.00 2.27
6907 7764 1.001974 ACAGCTTATTCACCAGCGTCA 59.998 47.619 0.00 0.00 41.24 4.35
6965 7824 0.888619 CTCTACTGCGGGAACTGTCA 59.111 55.000 0.00 0.00 36.83 3.58
7005 7864 4.450976 ACACTATGACACAGTTGCTTGAA 58.549 39.130 0.00 0.00 0.00 2.69
7134 7993 2.417933 CTCATTCGTGGCTTTTCAGGAG 59.582 50.000 0.00 0.00 33.83 3.69
7181 8040 5.310451 ACTCTACTATCTAAGCTCTTCCGG 58.690 45.833 0.00 0.00 0.00 5.14
7199 8058 0.179097 GGGAGATCTGTCGGCACTTC 60.179 60.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038166 GGGAAGATGTGGACCAAGCA 59.962 55.000 0.00 0.00 0.00 3.91
56 58 1.123928 GGTGGTCTCTAGGATGGTGG 58.876 60.000 0.00 0.00 0.00 4.61
103 105 5.603750 AGATGGATGGGCTCATAGGTATAA 58.396 41.667 0.00 0.00 32.98 0.98
166 168 3.188786 GGTGCTCACGGACGATGC 61.189 66.667 0.00 0.34 31.41 3.91
196 198 3.908382 GCGATTGGCGAATTGTCATATTC 59.092 43.478 10.07 0.00 44.57 1.75
210 212 1.440145 GCCCTTGTCTAGCGATTGGC 61.440 60.000 0.00 0.00 44.05 4.52
211 213 2.695314 GCCCTTGTCTAGCGATTGG 58.305 57.895 0.00 0.00 0.00 3.16
243 245 4.771356 ACGACGACGATGGCACGG 62.771 66.667 15.32 0.27 42.66 4.94
253 255 1.799121 GTGGCTTACCGACGACGAC 60.799 63.158 9.28 0.00 42.66 4.34
276 278 0.396060 GGCTCTCATCATCCTCCCAC 59.604 60.000 0.00 0.00 0.00 4.61
294 296 1.153168 GTGGATGACATCGGTGGGG 60.153 63.158 9.31 0.00 0.00 4.96
299 301 3.393800 GACTTATGGTGGATGACATCGG 58.606 50.000 9.31 0.00 30.79 4.18
300 302 3.181466 TGGACTTATGGTGGATGACATCG 60.181 47.826 9.31 0.00 30.79 3.84
320 322 2.039084 ACAAGCTCTACCTGGTCTTTGG 59.961 50.000 0.63 0.00 0.00 3.28
328 330 2.802816 GTGACAACACAAGCTCTACCTG 59.197 50.000 0.00 0.00 45.32 4.00
344 346 1.609580 GCCTCGTGGTAAATGGTGACA 60.610 52.381 5.26 0.00 39.60 3.58
367 369 2.687566 AACCCTAGCCACCTCCCG 60.688 66.667 0.00 0.00 0.00 5.14
392 394 2.052690 TGCTGGTCGCCTCTACTCC 61.053 63.158 0.00 0.00 38.05 3.85
451 453 9.362151 TGGTTCTAATAAACTTCCAAAGTGAAT 57.638 29.630 0.00 0.00 41.91 2.57
526 529 6.193410 CGCTGTCATGATTACGAAAATCTTTG 59.807 38.462 0.00 11.55 0.00 2.77
527 530 6.128282 ACGCTGTCATGATTACGAAAATCTTT 60.128 34.615 17.53 2.83 0.00 2.52
546 549 1.667830 ACACGCTATGCAACGCTGT 60.668 52.632 7.01 7.98 0.00 4.40
558 561 3.070018 CCATTTTCTCTTCTCACACGCT 58.930 45.455 0.00 0.00 0.00 5.07
590 912 1.004320 TGGACATCCCAACCGTTCG 60.004 57.895 0.00 0.00 43.29 3.95
638 962 3.137484 GCACCTGCACGTCTATGAA 57.863 52.632 0.00 0.00 41.59 2.57
842 1174 2.517598 CGTGACAGTTGACGGGAAG 58.482 57.895 0.00 0.00 31.84 3.46
843 1175 4.742274 CGTGACAGTTGACGGGAA 57.258 55.556 0.00 0.00 31.84 3.97
848 1185 2.594962 CGGCACCGTGACAGTTGAC 61.595 63.158 4.95 0.00 34.35 3.18
920 1262 0.759346 CTCCTGGTTATAAGCCGGCT 59.241 55.000 27.08 27.08 0.00 5.52
970 1320 2.492449 TTCTCTGGTTGGCTCGAGCG 62.492 60.000 29.81 15.71 43.26 5.03
1146 1519 3.670625 TGTCCCGTTGTAAAGATGGAAG 58.329 45.455 0.00 0.00 0.00 3.46
1461 1850 1.692534 TGGGATTGGGAGGGAAATCA 58.307 50.000 0.00 0.00 35.00 2.57
1524 1913 1.683385 GCAGGCTCTTCTTTGGTTGTT 59.317 47.619 0.00 0.00 0.00 2.83
1526 1915 0.600057 GGCAGGCTCTTCTTTGGTTG 59.400 55.000 0.00 0.00 0.00 3.77
1527 1916 0.890996 CGGCAGGCTCTTCTTTGGTT 60.891 55.000 0.00 0.00 0.00 3.67
1528 1917 1.302832 CGGCAGGCTCTTCTTTGGT 60.303 57.895 0.00 0.00 0.00 3.67
1531 1920 2.360475 GGCGGCAGGCTCTTCTTT 60.360 61.111 3.07 0.00 42.94 2.52
1532 1921 2.976490 ATGGCGGCAGGCTCTTCTT 61.976 57.895 19.29 0.00 44.18 2.52
1656 2045 2.444256 CCTCCATCCGGGGTCCTTC 61.444 68.421 0.00 0.00 37.22 3.46
1924 2319 3.552890 GGTTTTTACGGTACTCGGTCACT 60.553 47.826 8.31 0.00 44.45 3.41
1934 2329 9.590451 CACTAAGATTAGATGGTTTTTACGGTA 57.410 33.333 6.61 0.00 34.84 4.02
1941 2336 6.721318 TCCAGCACTAAGATTAGATGGTTTT 58.279 36.000 6.61 0.00 35.69 2.43
1943 2338 5.957771 TCCAGCACTAAGATTAGATGGTT 57.042 39.130 6.61 0.00 35.69 3.67
1957 2352 0.674895 GCAAACGAGGATCCAGCACT 60.675 55.000 15.82 0.00 0.00 4.40
1964 2359 1.134694 GGCAACGCAAACGAGGATC 59.865 57.895 0.00 0.00 43.93 3.36
1977 2374 2.027625 CGAGTGAAGGACGGGCAAC 61.028 63.158 0.00 0.00 0.00 4.17
2085 2485 2.359531 GTGGATGAAGCTAGCGAGTACT 59.640 50.000 9.55 0.00 0.00 2.73
2129 2529 4.021925 GTTGGTCAGGCGGCCTCT 62.022 66.667 20.97 0.00 0.00 3.69
2130 2530 2.180159 TAAGTTGGTCAGGCGGCCTC 62.180 60.000 20.97 9.08 0.00 4.70
2173 2573 6.431234 ACACGCTGATATTTCTCTTCCTTTTT 59.569 34.615 0.00 0.00 0.00 1.94
2179 2579 6.408858 TTTCACACGCTGATATTTCTCTTC 57.591 37.500 0.00 0.00 0.00 2.87
2217 2617 4.274978 TCGTTTCCTTTCTTTTTCCAGGT 58.725 39.130 0.00 0.00 0.00 4.00
2237 2637 3.382964 CGACGCGATTTAAGCTTCG 57.617 52.632 15.93 3.96 46.53 3.79
2255 2658 1.129058 ATGGGAGGACGAATGGTACC 58.871 55.000 4.43 4.43 0.00 3.34
2296 2700 1.598882 GAAGGAAATCGGAGGCATCC 58.401 55.000 7.52 7.52 42.81 3.51
2431 2841 2.276430 GCGTCGCCGTGCATTAAC 60.276 61.111 5.75 0.00 36.15 2.01
2441 2852 2.962253 GGATGTAGCTGCGTCGCC 60.962 66.667 15.88 0.00 0.00 5.54
2453 2864 0.895530 ACGAACGAGTCCATGGATGT 59.104 50.000 19.62 14.19 0.00 3.06
2502 2913 1.375908 GTCGCTGGATGGAGTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
2570 2986 8.339714 CGTTCCAAAATAAGTGACTCAACTTTA 58.660 33.333 0.00 0.00 40.77 1.85
2571 2987 7.193595 CGTTCCAAAATAAGTGACTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
2573 2989 5.238650 CCGTTCCAAAATAAGTGACTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
2574 2990 5.237779 TCCGTTCCAAAATAAGTGACTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
2575 2991 5.369833 TCCGTTCCAAAATAAGTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
2576 2992 4.963373 TCCGTTCCAAAATAAGTGACTCA 58.037 39.130 0.00 0.00 0.00 3.41
2577 2993 4.995487 ACTCCGTTCCAAAATAAGTGACTC 59.005 41.667 0.00 0.00 0.00 3.36
2578 2994 4.755123 CACTCCGTTCCAAAATAAGTGACT 59.245 41.667 0.00 0.00 35.76 3.41
2579 2995 4.083484 CCACTCCGTTCCAAAATAAGTGAC 60.083 45.833 0.00 0.00 35.76 3.67
2580 2996 4.069304 CCACTCCGTTCCAAAATAAGTGA 58.931 43.478 0.00 0.00 35.76 3.41
2581 2997 3.190535 CCCACTCCGTTCCAAAATAAGTG 59.809 47.826 0.00 0.00 34.00 3.16
2582 2998 3.181437 ACCCACTCCGTTCCAAAATAAGT 60.181 43.478 0.00 0.00 0.00 2.24
2583 2999 3.418047 ACCCACTCCGTTCCAAAATAAG 58.582 45.455 0.00 0.00 0.00 1.73
2584 3000 3.512219 ACCCACTCCGTTCCAAAATAA 57.488 42.857 0.00 0.00 0.00 1.40
2585 3001 4.847990 ATACCCACTCCGTTCCAAAATA 57.152 40.909 0.00 0.00 0.00 1.40
2586 3002 3.732048 ATACCCACTCCGTTCCAAAAT 57.268 42.857 0.00 0.00 0.00 1.82
2587 3003 3.512219 AATACCCACTCCGTTCCAAAA 57.488 42.857 0.00 0.00 0.00 2.44
2588 3004 3.512219 AAATACCCACTCCGTTCCAAA 57.488 42.857 0.00 0.00 0.00 3.28
2589 3005 3.512219 AAAATACCCACTCCGTTCCAA 57.488 42.857 0.00 0.00 0.00 3.53
2590 3006 3.512219 AAAAATACCCACTCCGTTCCA 57.488 42.857 0.00 0.00 0.00 3.53
2591 3007 5.677852 GCATTAAAAATACCCACTCCGTTCC 60.678 44.000 0.00 0.00 0.00 3.62
2592 3008 5.337554 GCATTAAAAATACCCACTCCGTTC 58.662 41.667 0.00 0.00 0.00 3.95
2593 3009 4.158949 GGCATTAAAAATACCCACTCCGTT 59.841 41.667 0.00 0.00 0.00 4.44
2594 3010 3.697542 GGCATTAAAAATACCCACTCCGT 59.302 43.478 0.00 0.00 0.00 4.69
2595 3011 3.067601 GGGCATTAAAAATACCCACTCCG 59.932 47.826 3.45 0.00 40.52 4.63
2596 3012 3.386726 GGGGCATTAAAAATACCCACTCC 59.613 47.826 9.61 0.00 42.76 3.85
2597 3013 3.067601 CGGGGCATTAAAAATACCCACTC 59.932 47.826 9.61 0.00 42.76 3.51
2598 3014 3.028130 CGGGGCATTAAAAATACCCACT 58.972 45.455 9.61 0.00 42.76 4.00
2599 3015 2.761767 ACGGGGCATTAAAAATACCCAC 59.238 45.455 9.61 0.19 42.76 4.61
2600 3016 3.025262 GACGGGGCATTAAAAATACCCA 58.975 45.455 9.61 0.00 42.76 4.51
2601 3017 3.067601 CAGACGGGGCATTAAAAATACCC 59.932 47.826 0.00 0.00 40.05 3.69
2602 3018 3.490249 GCAGACGGGGCATTAAAAATACC 60.490 47.826 0.00 0.00 0.00 2.73
2603 3019 3.490249 GGCAGACGGGGCATTAAAAATAC 60.490 47.826 0.00 0.00 0.00 1.89
2604 3020 2.691011 GGCAGACGGGGCATTAAAAATA 59.309 45.455 0.00 0.00 0.00 1.40
2605 3021 1.480545 GGCAGACGGGGCATTAAAAAT 59.519 47.619 0.00 0.00 0.00 1.82
2666 3083 7.042051 CGATCACCTAATGAACCATTAATTCGT 60.042 37.037 0.00 0.00 41.93 3.85
2761 3179 6.369890 TGAATGTGCATCTCTTCTTCTGTTAC 59.630 38.462 0.00 0.00 0.00 2.50
2777 3201 0.608856 AGCGGTCCAATGAATGTGCA 60.609 50.000 0.00 0.00 0.00 4.57
2876 3300 4.670765 AGATTTGCAGAGATTTTGGAGGT 58.329 39.130 0.00 0.00 0.00 3.85
2909 3333 9.317936 CAAAGTAATGCTTCTGTAGTCATATGA 57.682 33.333 0.00 0.00 36.17 2.15
2955 3379 2.046314 CACGCCCCCGAATTGTCT 60.046 61.111 0.00 0.00 38.29 3.41
2956 3380 0.674269 TAACACGCCCCCGAATTGTC 60.674 55.000 0.00 0.00 38.29 3.18
2978 3402 8.927675 TGGTTAGGTCAAAAGATAAAAAGCTA 57.072 30.769 0.00 0.00 0.00 3.32
3003 3428 4.141620 ACTCACACCATCTGAACTTGTCTT 60.142 41.667 0.00 0.00 0.00 3.01
3008 3433 3.117888 ACCAACTCACACCATCTGAACTT 60.118 43.478 0.00 0.00 0.00 2.66
3009 3434 2.439507 ACCAACTCACACCATCTGAACT 59.560 45.455 0.00 0.00 0.00 3.01
3035 3460 7.329226 CACAAATATGAGACGGAGCAAAATTTT 59.671 33.333 0.00 0.00 0.00 1.82
3039 3464 4.155826 CCACAAATATGAGACGGAGCAAAA 59.844 41.667 0.00 0.00 0.00 2.44
3052 3477 6.930722 GGCTGAAATTATTCCCCACAAATATG 59.069 38.462 0.00 0.00 34.49 1.78
3053 3478 6.043127 GGGCTGAAATTATTCCCCACAAATAT 59.957 38.462 0.00 0.00 37.14 1.28
3055 3480 4.164030 GGGCTGAAATTATTCCCCACAAAT 59.836 41.667 0.00 0.00 37.14 2.32
3056 3481 3.517500 GGGCTGAAATTATTCCCCACAAA 59.482 43.478 0.00 0.00 37.14 2.83
3057 3482 3.103742 GGGCTGAAATTATTCCCCACAA 58.896 45.455 0.00 0.00 37.14 3.33
3058 3483 2.314549 AGGGCTGAAATTATTCCCCACA 59.685 45.455 0.00 0.00 38.71 4.17
3060 3485 3.791545 ACTAGGGCTGAAATTATTCCCCA 59.208 43.478 0.00 0.00 38.71 4.96
3061 3486 4.145052 CACTAGGGCTGAAATTATTCCCC 58.855 47.826 0.00 0.00 37.32 4.81
3062 3487 3.570125 GCACTAGGGCTGAAATTATTCCC 59.430 47.826 10.54 0.00 34.49 3.97
3063 3488 4.207165 TGCACTAGGGCTGAAATTATTCC 58.793 43.478 19.73 0.00 34.49 3.01
3064 3489 5.835113 TTGCACTAGGGCTGAAATTATTC 57.165 39.130 19.73 0.00 36.04 1.75
3067 3492 3.443681 GCTTTGCACTAGGGCTGAAATTA 59.556 43.478 19.73 0.00 34.04 1.40
3071 3496 0.110295 TGCTTTGCACTAGGGCTGAA 59.890 50.000 19.73 11.97 31.71 3.02
3072 3497 0.110295 TTGCTTTGCACTAGGGCTGA 59.890 50.000 19.73 3.80 38.71 4.26
3073 3498 0.961019 TTTGCTTTGCACTAGGGCTG 59.039 50.000 19.73 9.54 38.71 4.85
3074 3499 1.928868 ATTTGCTTTGCACTAGGGCT 58.071 45.000 19.73 0.00 38.71 5.19
3075 3500 2.232208 AGAATTTGCTTTGCACTAGGGC 59.768 45.455 10.98 10.98 38.71 5.19
3097 3522 8.847196 GTCTGGAAAGTCTTGGTTTTTATAGTT 58.153 33.333 0.00 0.00 0.00 2.24
3098 3523 7.447545 GGTCTGGAAAGTCTTGGTTTTTATAGT 59.552 37.037 0.00 0.00 0.00 2.12
3148 3582 7.798596 ATTATCTGACCATGACATCTGAAAC 57.201 36.000 0.00 0.00 0.00 2.78
3175 3609 9.148104 GAAAAGATTTCCCTCATGAAAATGAAG 57.852 33.333 8.27 0.00 37.74 3.02
3184 3618 5.972107 ACACTGAAAAGATTTCCCTCATG 57.028 39.130 0.77 0.00 0.00 3.07
3211 3648 2.224606 CAACCACATGCTCAAGACAGT 58.775 47.619 0.00 0.00 0.00 3.55
3272 3721 9.989869 GAAACATGAAAGATAACTTTAGGTAGC 57.010 33.333 0.00 0.00 44.97 3.58
3480 4038 4.896080 ACAAAAGCAAACGCAAAATCTTG 58.104 34.783 0.00 0.00 35.49 3.02
3486 4044 4.999751 AAAAGACAAAAGCAAACGCAAA 57.000 31.818 0.00 0.00 0.00 3.68
3526 4131 3.361786 AGGGTTCAATTTATTCCCCACG 58.638 45.455 0.00 0.00 38.97 4.94
3543 4148 6.173427 ACTTCAATGTTTTTGCATTAGGGT 57.827 33.333 0.00 0.00 37.00 4.34
3790 4427 4.720273 GGAGGGAGTAGGACTTTGGATAAA 59.280 45.833 0.00 0.00 0.00 1.40
3848 4485 9.462606 TGTCTATATACATCCATATGAAGTCGT 57.537 33.333 3.65 0.00 36.54 4.34
3886 4528 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3887 4529 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3889 4531 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
3890 4532 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
3891 4533 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
4055 4775 1.395608 TGCAATAAAAGAGTACCGCGC 59.604 47.619 0.00 0.00 0.00 6.86
4056 4776 3.369756 TCTTGCAATAAAAGAGTACCGCG 59.630 43.478 0.00 0.00 0.00 6.46
4124 4846 8.116753 CCATAATCGAAACGATGGATTTATAGC 58.883 37.037 7.39 0.00 46.30 2.97
4134 4856 3.961477 TTGGCCATAATCGAAACGATG 57.039 42.857 6.09 0.00 46.30 3.84
4138 4860 4.862574 GGAAACTTTGGCCATAATCGAAAC 59.137 41.667 6.09 0.00 0.00 2.78
4155 4877 7.521585 CGTGTTATTCTTTAAAGCCAGGAAACT 60.522 37.037 10.51 0.00 46.44 2.66
4165 4887 9.498307 AAAAGTCACACGTGTTATTCTTTAAAG 57.502 29.630 20.79 9.04 0.00 1.85
4218 4942 9.640952 ATTTTTCCCTATCTTAATGAAATCGGA 57.359 29.630 0.00 0.00 0.00 4.55
4219 4943 9.683069 CATTTTTCCCTATCTTAATGAAATCGG 57.317 33.333 0.00 0.00 0.00 4.18
4308 5033 6.435884 AGAAGATTCTGCATCTGCTGCTGA 62.436 45.833 11.69 11.69 45.50 4.26
4310 5035 2.092861 AGAAGATTCTGCATCTGCTGCT 60.093 45.455 5.01 0.00 45.50 4.24
4488 5215 6.535150 CACGGGAAATATGTATACCTGCTATG 59.465 42.308 0.00 0.00 0.00 2.23
4538 5272 7.120285 GCATCTGAATATAGCAGGCAAGAAATA 59.880 37.037 5.87 0.00 34.20 1.40
4550 5284 2.091277 GTGCGACGCATCTGAATATAGC 59.909 50.000 27.23 4.25 41.91 2.97
4632 5366 1.735920 AGCGAGCGCAAGAGTTCAG 60.736 57.895 17.68 0.00 44.88 3.02
4654 5388 2.739913 GTGCAGTTTGAATACAGGCGTA 59.260 45.455 0.00 0.00 0.00 4.42
4666 5400 5.628193 CAGCTAAATCAAAGAGTGCAGTTTG 59.372 40.000 9.02 9.02 35.38 2.93
4697 5431 8.872845 GGTGAAAAGAGCAATTTTATTGGTATG 58.127 33.333 4.29 0.00 32.62 2.39
4733 5467 4.139786 CTGTAACCATTGCATAGGCTGAT 58.860 43.478 0.00 0.00 41.91 2.90
4737 5471 2.223572 GCACTGTAACCATTGCATAGGC 60.224 50.000 4.94 0.00 44.28 3.93
4769 5543 5.826737 CGTCTCCCCAGTTTCTTCTAGTATA 59.173 44.000 0.00 0.00 0.00 1.47
4804 5578 5.835280 AGGTGAATCACAAAAGTTTCTGGAT 59.165 36.000 15.86 0.00 35.86 3.41
4805 5579 5.067674 CAGGTGAATCACAAAAGTTTCTGGA 59.932 40.000 15.86 0.00 35.86 3.86
4806 5580 5.284079 CAGGTGAATCACAAAAGTTTCTGG 58.716 41.667 15.86 0.00 35.86 3.86
4807 5581 4.741676 GCAGGTGAATCACAAAAGTTTCTG 59.258 41.667 15.86 10.93 35.86 3.02
4809 5583 4.681744 TGCAGGTGAATCACAAAAGTTTC 58.318 39.130 15.86 0.00 35.86 2.78
4811 5585 3.068590 CCTGCAGGTGAATCACAAAAGTT 59.931 43.478 25.53 0.00 35.86 2.66
4812 5586 2.624838 CCTGCAGGTGAATCACAAAAGT 59.375 45.455 25.53 0.00 35.86 2.66
4813 5587 2.608752 GCCTGCAGGTGAATCACAAAAG 60.609 50.000 32.81 6.67 35.86 2.27
4815 5589 0.961019 GCCTGCAGGTGAATCACAAA 59.039 50.000 32.81 0.00 35.86 2.83
4816 5590 0.895100 GGCCTGCAGGTGAATCACAA 60.895 55.000 32.81 0.00 35.86 3.33
4819 5593 2.233566 AGGGCCTGCAGGTGAATCA 61.234 57.895 32.81 0.00 37.57 2.57
4822 5614 3.177884 ACAGGGCCTGCAGGTGAA 61.178 61.111 33.04 0.00 34.37 3.18
4840 5632 8.345565 AGCGAATGAAGATCAAACATATTAACC 58.654 33.333 0.00 0.00 0.00 2.85
4895 5690 1.739466 CAGCGGCAAGAGCAATAAAGA 59.261 47.619 1.45 0.00 44.61 2.52
4899 5694 1.939974 CTACAGCGGCAAGAGCAATA 58.060 50.000 1.45 0.00 44.61 1.90
4900 5695 1.372087 GCTACAGCGGCAAGAGCAAT 61.372 55.000 13.10 0.00 44.61 3.56
4913 5708 2.345641 CGAATGAACAAGACGGCTACAG 59.654 50.000 0.00 0.00 0.00 2.74
4914 5709 2.333926 CGAATGAACAAGACGGCTACA 58.666 47.619 0.00 0.00 0.00 2.74
4915 5710 1.060698 GCGAATGAACAAGACGGCTAC 59.939 52.381 0.00 0.00 0.00 3.58
4921 5716 4.377841 CCTTCTCTTGCGAATGAACAAGAC 60.378 45.833 1.49 0.00 45.48 3.01
5161 5959 0.030638 AGGTGCATTTCACGTGTTGC 59.969 50.000 24.00 24.00 46.56 4.17
5179 5980 2.200067 CGGAGCTAGATTGTTGCAGAG 58.800 52.381 0.00 0.00 0.00 3.35
5227 6036 3.769844 GTCAGAGAGAGGTAACCCATGAA 59.230 47.826 0.00 0.00 37.17 2.57
5228 6037 3.011821 AGTCAGAGAGAGGTAACCCATGA 59.988 47.826 0.00 0.00 37.17 3.07
5229 6038 3.370104 AGTCAGAGAGAGGTAACCCATG 58.630 50.000 0.00 0.00 37.17 3.66
5230 6039 3.767309 AGTCAGAGAGAGGTAACCCAT 57.233 47.619 0.00 0.00 37.17 4.00
5231 6040 3.544698 AAGTCAGAGAGAGGTAACCCA 57.455 47.619 0.00 0.00 37.17 4.51
5232 6041 3.833070 TCAAAGTCAGAGAGAGGTAACCC 59.167 47.826 0.00 0.00 37.17 4.11
5233 6042 5.186021 TGATCAAAGTCAGAGAGAGGTAACC 59.814 44.000 0.00 0.00 37.17 2.85
5234 6043 6.274157 TGATCAAAGTCAGAGAGAGGTAAC 57.726 41.667 0.00 0.00 0.00 2.50
5235 6044 6.127225 CCATGATCAAAGTCAGAGAGAGGTAA 60.127 42.308 0.00 0.00 0.00 2.85
5236 6045 5.362143 CCATGATCAAAGTCAGAGAGAGGTA 59.638 44.000 0.00 0.00 0.00 3.08
5237 6046 4.161942 CCATGATCAAAGTCAGAGAGAGGT 59.838 45.833 0.00 0.00 0.00 3.85
5238 6047 4.443175 CCCATGATCAAAGTCAGAGAGAGG 60.443 50.000 0.00 0.00 0.00 3.69
5239 6048 4.161942 ACCCATGATCAAAGTCAGAGAGAG 59.838 45.833 0.00 0.00 0.00 3.20
5240 6049 4.099633 ACCCATGATCAAAGTCAGAGAGA 58.900 43.478 0.00 0.00 0.00 3.10
5241 6050 4.484537 ACCCATGATCAAAGTCAGAGAG 57.515 45.455 0.00 0.00 0.00 3.20
5242 6051 4.582869 CAACCCATGATCAAAGTCAGAGA 58.417 43.478 0.00 0.00 0.00 3.10
5243 6052 3.128242 GCAACCCATGATCAAAGTCAGAG 59.872 47.826 0.00 0.00 0.00 3.35
5244 6053 3.084039 GCAACCCATGATCAAAGTCAGA 58.916 45.455 0.00 0.00 0.00 3.27
5245 6054 2.821378 TGCAACCCATGATCAAAGTCAG 59.179 45.455 0.00 0.00 0.00 3.51
5246 6055 2.821378 CTGCAACCCATGATCAAAGTCA 59.179 45.455 0.00 0.00 0.00 3.41
5247 6056 2.165030 CCTGCAACCCATGATCAAAGTC 59.835 50.000 0.00 0.00 0.00 3.01
5248 6057 2.173519 CCTGCAACCCATGATCAAAGT 58.826 47.619 0.00 0.00 0.00 2.66
5249 6058 2.173519 ACCTGCAACCCATGATCAAAG 58.826 47.619 0.00 0.00 0.00 2.77
5250 6059 2.307496 ACCTGCAACCCATGATCAAA 57.693 45.000 0.00 0.00 0.00 2.69
5251 6060 2.307496 AACCTGCAACCCATGATCAA 57.693 45.000 0.00 0.00 0.00 2.57
5252 6061 2.620367 GGTAACCTGCAACCCATGATCA 60.620 50.000 0.00 0.00 0.00 2.92
5253 6062 2.024414 GGTAACCTGCAACCCATGATC 58.976 52.381 0.00 0.00 0.00 2.92
5254 6063 1.640670 AGGTAACCTGCAACCCATGAT 59.359 47.619 1.55 0.00 36.34 2.45
5255 6064 1.072266 AGGTAACCTGCAACCCATGA 58.928 50.000 1.55 0.00 36.34 3.07
5256 6065 1.545582 CAAGGTAACCTGCAACCCATG 59.454 52.381 1.55 0.00 36.34 3.66
5257 6066 1.549950 CCAAGGTAACCTGCAACCCAT 60.550 52.381 1.55 0.00 36.34 4.00
5258 6067 0.178975 CCAAGGTAACCTGCAACCCA 60.179 55.000 1.55 0.00 36.34 4.51
5259 6068 0.898326 CCCAAGGTAACCTGCAACCC 60.898 60.000 1.55 0.00 36.34 4.11
5260 6069 0.898326 CCCCAAGGTAACCTGCAACC 60.898 60.000 0.00 0.00 32.13 3.77
5422 6255 1.315981 CGTAGACCAGGAGCAGCTCA 61.316 60.000 24.09 0.00 31.08 4.26
5741 6577 0.687354 ATATGCCATCCACCGGAGTC 59.313 55.000 9.46 0.00 34.05 3.36
5750 6586 6.128282 CGTTTCCACAATAGTATATGCCATCC 60.128 42.308 0.00 0.00 0.00 3.51
5762 6598 1.398390 GCTCCTGCGTTTCCACAATAG 59.602 52.381 0.00 0.00 0.00 1.73
5796 6635 5.288015 TCATTCGCAACAATCAAACACAAT 58.712 33.333 0.00 0.00 0.00 2.71
6163 7002 0.523072 CTTTGTGACCCAGGCATTCG 59.477 55.000 0.00 0.00 0.00 3.34
6166 7005 0.606401 CGTCTTTGTGACCCAGGCAT 60.606 55.000 0.00 0.00 42.49 4.40
6258 7097 1.004200 GTGTTAGGGGTGGTGGTCG 60.004 63.158 0.00 0.00 0.00 4.79
6290 7129 5.404946 GTCGCAAACACTGACCTAATACTA 58.595 41.667 0.00 0.00 0.00 1.82
6291 7130 4.243270 GTCGCAAACACTGACCTAATACT 58.757 43.478 0.00 0.00 0.00 2.12
6292 7131 3.370061 GGTCGCAAACACTGACCTAATAC 59.630 47.826 3.46 0.00 46.86 1.89
6295 7134 1.873698 GGTCGCAAACACTGACCTAA 58.126 50.000 3.46 0.00 46.86 2.69
6299 7138 2.935955 CCGGTCGCAAACACTGAC 59.064 61.111 0.00 0.00 0.00 3.51
6312 7151 0.393820 TGAAGTAAAACTCGGCCGGT 59.606 50.000 27.83 19.40 0.00 5.28
6327 7167 5.411977 AGCAAATCTCTCAACAGTGATGAAG 59.588 40.000 4.52 5.64 33.89 3.02
6364 7204 0.030908 AAGAATCGTCGGATCGCTCC 59.969 55.000 0.00 0.00 38.29 4.70
6395 7237 7.345691 ACCAATCACATATTTACATCACCTGA 58.654 34.615 0.00 0.00 0.00 3.86
6458 7300 3.266636 CCACTCCAATGTACGTATGCAA 58.733 45.455 0.00 0.00 0.00 4.08
6573 7415 7.976734 ACTGTATGTTACTTAGAATCTGACTGC 59.023 37.037 0.00 0.00 0.00 4.40
6678 7525 8.427902 AGCAACATATTCTAGTCTGGATATGA 57.572 34.615 15.81 0.00 0.00 2.15
6747 7594 4.018050 AGGGACAAGGATAGAACATTTGCT 60.018 41.667 0.00 0.00 0.00 3.91
6878 7735 7.254761 CGCTGGTGAATAAGCTGTTATTTATCA 60.255 37.037 0.00 0.00 38.70 2.15
6907 7764 7.890127 TGTTAAATGTGGGAGAAGAAGAATCAT 59.110 33.333 0.00 0.00 0.00 2.45
7181 8040 0.526524 CGAAGTGCCGACAGATCTCC 60.527 60.000 0.00 0.00 0.00 3.71
7199 8058 1.286880 CAAACCCCAAGAAGCTGCG 59.713 57.895 0.00 0.00 0.00 5.18
7241 8100 2.681706 ACAGAAGACACATCTCGCAAG 58.318 47.619 0.00 0.00 32.34 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.