Multiple sequence alignment - TraesCS3D01G262100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G262100 chr3D 100.000 1610 0 0 859 2468 363854795 363853186 0.000000e+00 2974.0
1 TraesCS3D01G262100 chr3D 96.366 853 26 3 859 1706 486147131 486146279 0.000000e+00 1399.0
2 TraesCS3D01G262100 chr3D 95.455 858 24 6 859 1705 124070450 124071303 0.000000e+00 1354.0
3 TraesCS3D01G262100 chr3D 94.368 657 33 4 1815 2468 300539166 300539821 0.000000e+00 1005.0
4 TraesCS3D01G262100 chr3D 100.000 500 0 0 1 500 363855653 363855154 0.000000e+00 924.0
5 TraesCS3D01G262100 chr3D 94.009 217 13 0 284 500 486147833 486147617 1.830000e-86 329.0
6 TraesCS3D01G262100 chr3D 93.243 222 12 2 279 500 124069443 124069661 8.510000e-85 324.0
7 TraesCS3D01G262100 chr3D 100.000 37 0 0 4 40 363605521 363605557 4.400000e-08 69.4
8 TraesCS3D01G262100 chr3D 100.000 33 0 0 12 44 363605556 363605588 7.370000e-06 62.1
9 TraesCS3D01G262100 chr7A 96.462 848 29 1 859 1705 700256774 700257621 0.000000e+00 1399.0
10 TraesCS3D01G262100 chr5B 96.362 852 26 3 859 1706 56361607 56362457 0.000000e+00 1397.0
11 TraesCS3D01G262100 chr5B 95.327 856 31 4 859 1706 517572239 517571385 0.000000e+00 1351.0
12 TraesCS3D01G262100 chr5B 95.283 848 36 2 859 1705 297042294 297043138 0.000000e+00 1341.0
13 TraesCS3D01G262100 chr5D 95.863 846 31 2 859 1703 397098309 397099151 0.000000e+00 1365.0
14 TraesCS3D01G262100 chr5D 95.642 849 26 4 859 1703 432179325 432178484 0.000000e+00 1352.0
15 TraesCS3D01G262100 chr5D 93.395 651 37 5 1822 2468 370774511 370775159 0.000000e+00 959.0
16 TraesCS3D01G262100 chr5D 93.088 217 15 0 284 500 53755584 53755800 3.960000e-83 318.0
17 TraesCS3D01G262100 chr3A 95.637 848 30 2 859 1705 418753968 418753127 0.000000e+00 1354.0
18 TraesCS3D01G262100 chr3A 93.374 649 37 5 1824 2468 176139200 176138554 0.000000e+00 955.0
19 TraesCS3D01G262100 chr3A 93.651 63 3 1 1 63 484653484 484653545 2.610000e-15 93.5
20 TraesCS3D01G262100 chr6D 94.444 648 31 3 1824 2468 383214586 383215231 0.000000e+00 992.0
21 TraesCS3D01G262100 chr6D 93.395 651 38 4 1820 2468 23101456 23100809 0.000000e+00 959.0
22 TraesCS3D01G262100 chr6D 93.088 217 15 0 284 500 58735218 58735002 3.960000e-83 318.0
23 TraesCS3D01G262100 chr6D 92.694 219 15 1 283 500 417530033 417529815 5.120000e-82 315.0
24 TraesCS3D01G262100 chr2D 94.299 649 30 6 1824 2468 118538838 118538193 0.000000e+00 987.0
25 TraesCS3D01G262100 chr2D 93.663 647 37 3 1824 2468 381888803 381888159 0.000000e+00 965.0
26 TraesCS3D01G262100 chr2D 93.385 650 37 4 1820 2468 53969561 53968917 0.000000e+00 957.0
27 TraesCS3D01G262100 chr2D 94.495 218 12 0 283 500 451007623 451007840 1.090000e-88 337.0
28 TraesCS3D01G262100 chr1D 93.538 650 37 5 1822 2468 348998491 348997844 0.000000e+00 963.0
29 TraesCS3D01G262100 chr4A 93.519 216 13 1 286 500 512021760 512021545 1.100000e-83 320.0
30 TraesCS3D01G262100 chr3B 93.119 218 15 0 283 500 207205133 207204916 1.100000e-83 320.0
31 TraesCS3D01G262100 chr3B 87.705 122 8 1 1703 1824 473708441 473708555 4.280000e-28 135.0
32 TraesCS3D01G262100 chr3B 83.621 116 7 6 183 287 473708330 473708444 5.620000e-17 99.0
33 TraesCS3D01G262100 chr3B 94.915 59 3 0 3 61 473708123 473708181 2.610000e-15 93.5
34 TraesCS3D01G262100 chrUn 92.342 222 16 1 279 500 441250326 441250546 5.120000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G262100 chr3D 363853186 363855653 2467 True 1949 2974 100.0000 1 2468 2 chr3D.!!$R1 2467
1 TraesCS3D01G262100 chr3D 300539166 300539821 655 False 1005 1005 94.3680 1815 2468 1 chr3D.!!$F1 653
2 TraesCS3D01G262100 chr3D 486146279 486147833 1554 True 864 1399 95.1875 284 1706 2 chr3D.!!$R2 1422
3 TraesCS3D01G262100 chr3D 124069443 124071303 1860 False 839 1354 94.3490 279 1705 2 chr3D.!!$F2 1426
4 TraesCS3D01G262100 chr7A 700256774 700257621 847 False 1399 1399 96.4620 859 1705 1 chr7A.!!$F1 846
5 TraesCS3D01G262100 chr5B 56361607 56362457 850 False 1397 1397 96.3620 859 1706 1 chr5B.!!$F1 847
6 TraesCS3D01G262100 chr5B 517571385 517572239 854 True 1351 1351 95.3270 859 1706 1 chr5B.!!$R1 847
7 TraesCS3D01G262100 chr5B 297042294 297043138 844 False 1341 1341 95.2830 859 1705 1 chr5B.!!$F2 846
8 TraesCS3D01G262100 chr5D 397098309 397099151 842 False 1365 1365 95.8630 859 1703 1 chr5D.!!$F3 844
9 TraesCS3D01G262100 chr5D 432178484 432179325 841 True 1352 1352 95.6420 859 1703 1 chr5D.!!$R1 844
10 TraesCS3D01G262100 chr5D 370774511 370775159 648 False 959 959 93.3950 1822 2468 1 chr5D.!!$F2 646
11 TraesCS3D01G262100 chr3A 418753127 418753968 841 True 1354 1354 95.6370 859 1705 1 chr3A.!!$R2 846
12 TraesCS3D01G262100 chr3A 176138554 176139200 646 True 955 955 93.3740 1824 2468 1 chr3A.!!$R1 644
13 TraesCS3D01G262100 chr6D 383214586 383215231 645 False 992 992 94.4440 1824 2468 1 chr6D.!!$F1 644
14 TraesCS3D01G262100 chr6D 23100809 23101456 647 True 959 959 93.3950 1820 2468 1 chr6D.!!$R1 648
15 TraesCS3D01G262100 chr2D 118538193 118538838 645 True 987 987 94.2990 1824 2468 1 chr2D.!!$R2 644
16 TraesCS3D01G262100 chr2D 381888159 381888803 644 True 965 965 93.6630 1824 2468 1 chr2D.!!$R3 644
17 TraesCS3D01G262100 chr2D 53968917 53969561 644 True 957 957 93.3850 1820 2468 1 chr2D.!!$R1 648
18 TraesCS3D01G262100 chr1D 348997844 348998491 647 True 963 963 93.5380 1822 2468 1 chr1D.!!$R1 646


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.042881 AGGAGAACTGGTACCCCTCC 59.957 60.0 22.24 22.24 42.73 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 2243 0.45837 CGCGTGGATGTGATGACTGA 60.458 55.0 0.0 0.0 0.0 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.681978 GGGTTCTGCGCGACTGGT 62.682 66.667 12.10 0.00 0.00 4.00
22 23 3.414700 GGTTCTGCGCGACTGGTG 61.415 66.667 12.10 0.00 0.00 4.17
23 24 2.661866 GTTCTGCGCGACTGGTGT 60.662 61.111 12.10 0.00 0.00 4.16
24 25 2.661537 TTCTGCGCGACTGGTGTG 60.662 61.111 12.10 0.00 0.00 3.82
25 26 4.662961 TCTGCGCGACTGGTGTGG 62.663 66.667 12.10 0.00 0.00 4.17
26 27 4.969196 CTGCGCGACTGGTGTGGT 62.969 66.667 12.10 0.00 0.00 4.16
27 28 4.539083 TGCGCGACTGGTGTGGTT 62.539 61.111 12.10 0.00 0.00 3.67
28 29 4.012895 GCGCGACTGGTGTGGTTG 62.013 66.667 12.10 0.00 0.00 3.77
29 30 3.345808 CGCGACTGGTGTGGTTGG 61.346 66.667 0.00 0.00 0.00 3.77
30 31 2.203153 GCGACTGGTGTGGTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
31 32 2.542907 GCGACTGGTGTGGTTGGTG 61.543 63.158 0.00 0.00 0.00 4.17
32 33 2.542907 CGACTGGTGTGGTTGGTGC 61.543 63.158 0.00 0.00 0.00 5.01
33 34 2.515991 ACTGGTGTGGTTGGTGCG 60.516 61.111 0.00 0.00 0.00 5.34
34 35 2.515991 CTGGTGTGGTTGGTGCGT 60.516 61.111 0.00 0.00 0.00 5.24
35 36 2.044848 TGGTGTGGTTGGTGCGTT 60.045 55.556 0.00 0.00 0.00 4.84
36 37 2.335052 CTGGTGTGGTTGGTGCGTTG 62.335 60.000 0.00 0.00 0.00 4.10
37 38 2.115911 GGTGTGGTTGGTGCGTTGA 61.116 57.895 0.00 0.00 0.00 3.18
38 39 1.355210 GTGTGGTTGGTGCGTTGAG 59.645 57.895 0.00 0.00 0.00 3.02
51 52 2.787723 CGTTGAGCATAACTTCGTGG 57.212 50.000 0.00 0.00 0.00 4.94
52 53 1.393539 CGTTGAGCATAACTTCGTGGG 59.606 52.381 0.00 0.00 0.00 4.61
53 54 1.737793 GTTGAGCATAACTTCGTGGGG 59.262 52.381 0.00 0.00 0.00 4.96
54 55 0.981183 TGAGCATAACTTCGTGGGGT 59.019 50.000 0.00 0.00 0.00 4.95
55 56 1.349688 TGAGCATAACTTCGTGGGGTT 59.650 47.619 0.00 0.00 0.00 4.11
56 57 2.007608 GAGCATAACTTCGTGGGGTTC 58.992 52.381 0.00 0.00 0.00 3.62
57 58 0.725117 GCATAACTTCGTGGGGTTCG 59.275 55.000 0.00 0.00 0.00 3.95
58 59 1.365699 CATAACTTCGTGGGGTTCGG 58.634 55.000 0.00 0.00 0.00 4.30
59 60 0.251073 ATAACTTCGTGGGGTTCGGG 59.749 55.000 0.00 0.00 0.00 5.14
60 61 1.120795 TAACTTCGTGGGGTTCGGGT 61.121 55.000 0.00 0.00 0.00 5.28
61 62 2.358247 CTTCGTGGGGTTCGGGTG 60.358 66.667 0.00 0.00 0.00 4.61
62 63 2.843411 TTCGTGGGGTTCGGGTGA 60.843 61.111 0.00 0.00 0.00 4.02
63 64 2.180159 CTTCGTGGGGTTCGGGTGAT 62.180 60.000 0.00 0.00 0.00 3.06
64 65 1.770749 TTCGTGGGGTTCGGGTGATT 61.771 55.000 0.00 0.00 0.00 2.57
65 66 2.038269 CGTGGGGTTCGGGTGATTG 61.038 63.158 0.00 0.00 0.00 2.67
66 67 1.677633 GTGGGGTTCGGGTGATTGG 60.678 63.158 0.00 0.00 0.00 3.16
67 68 2.157452 TGGGGTTCGGGTGATTGGT 61.157 57.895 0.00 0.00 0.00 3.67
68 69 1.076014 GGGGTTCGGGTGATTGGTT 59.924 57.895 0.00 0.00 0.00 3.67
69 70 1.248101 GGGGTTCGGGTGATTGGTTG 61.248 60.000 0.00 0.00 0.00 3.77
70 71 1.248101 GGGTTCGGGTGATTGGTTGG 61.248 60.000 0.00 0.00 0.00 3.77
71 72 1.584495 GTTCGGGTGATTGGTTGGC 59.416 57.895 0.00 0.00 0.00 4.52
72 73 1.969064 TTCGGGTGATTGGTTGGCG 60.969 57.895 0.00 0.00 0.00 5.69
73 74 3.439540 CGGGTGATTGGTTGGCGG 61.440 66.667 0.00 0.00 0.00 6.13
74 75 2.282887 GGGTGATTGGTTGGCGGT 60.283 61.111 0.00 0.00 0.00 5.68
75 76 1.906333 GGGTGATTGGTTGGCGGTT 60.906 57.895 0.00 0.00 0.00 4.44
76 77 1.288752 GGTGATTGGTTGGCGGTTG 59.711 57.895 0.00 0.00 0.00 3.77
77 78 1.288752 GTGATTGGTTGGCGGTTGG 59.711 57.895 0.00 0.00 0.00 3.77
78 79 1.905843 TGATTGGTTGGCGGTTGGG 60.906 57.895 0.00 0.00 0.00 4.12
79 80 1.906333 GATTGGTTGGCGGTTGGGT 60.906 57.895 0.00 0.00 0.00 4.51
80 81 0.609681 GATTGGTTGGCGGTTGGGTA 60.610 55.000 0.00 0.00 0.00 3.69
81 82 0.610785 ATTGGTTGGCGGTTGGGTAG 60.611 55.000 0.00 0.00 0.00 3.18
82 83 2.360726 GGTTGGCGGTTGGGTAGG 60.361 66.667 0.00 0.00 0.00 3.18
83 84 3.060000 GTTGGCGGTTGGGTAGGC 61.060 66.667 0.00 0.00 0.00 3.93
84 85 3.571216 TTGGCGGTTGGGTAGGCA 61.571 61.111 0.00 0.00 38.69 4.75
85 86 3.561120 TTGGCGGTTGGGTAGGCAG 62.561 63.158 0.00 0.00 41.38 4.85
87 88 4.410400 GCGGTTGGGTAGGCAGCT 62.410 66.667 0.00 0.00 0.00 4.24
88 89 3.026431 GCGGTTGGGTAGGCAGCTA 62.026 63.158 0.00 0.00 0.00 3.32
89 90 1.153429 CGGTTGGGTAGGCAGCTAC 60.153 63.158 0.00 0.00 0.00 3.58
90 91 1.223763 GGTTGGGTAGGCAGCTACC 59.776 63.158 9.96 9.96 46.44 3.18
94 95 4.957164 GGTAGGCAGCTACCCAAC 57.043 61.111 0.00 0.00 42.58 3.77
95 96 1.223763 GGTAGGCAGCTACCCAACC 59.776 63.158 8.92 8.92 42.58 3.77
96 97 1.272554 GGTAGGCAGCTACCCAACCT 61.273 60.000 15.17 5.61 42.58 3.50
97 98 0.178301 GTAGGCAGCTACCCAACCTC 59.822 60.000 0.00 0.00 31.79 3.85
98 99 0.981277 TAGGCAGCTACCCAACCTCC 60.981 60.000 0.00 0.00 31.79 4.30
99 100 2.125106 GCAGCTACCCAACCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
100 101 2.584608 CAGCTACCCAACCTCCGG 59.415 66.667 0.00 0.00 0.00 5.14
107 108 2.911143 CCAACCTCCGGGGATCAG 59.089 66.667 0.37 0.00 38.76 2.90
108 109 1.995626 CCAACCTCCGGGGATCAGT 60.996 63.158 0.37 0.00 38.76 3.41
109 110 1.562672 CCAACCTCCGGGGATCAGTT 61.563 60.000 0.37 0.00 38.76 3.16
110 111 0.392998 CAACCTCCGGGGATCAGTTG 60.393 60.000 0.37 4.57 38.76 3.16
111 112 2.190578 CCTCCGGGGATCAGTTGC 59.809 66.667 0.37 0.00 37.23 4.17
112 113 2.669133 CCTCCGGGGATCAGTTGCA 61.669 63.158 0.37 0.00 37.23 4.08
113 114 1.299648 CTCCGGGGATCAGTTGCAA 59.700 57.895 0.00 0.00 0.00 4.08
114 115 0.745845 CTCCGGGGATCAGTTGCAAG 60.746 60.000 0.00 0.00 0.00 4.01
115 116 1.002134 CCGGGGATCAGTTGCAAGT 60.002 57.895 0.00 0.00 0.00 3.16
116 117 0.251916 CCGGGGATCAGTTGCAAGTA 59.748 55.000 6.43 0.00 0.00 2.24
117 118 1.369625 CGGGGATCAGTTGCAAGTAC 58.630 55.000 6.43 1.91 0.00 2.73
118 119 1.338674 CGGGGATCAGTTGCAAGTACA 60.339 52.381 6.43 0.00 0.00 2.90
119 120 2.359900 GGGGATCAGTTGCAAGTACAG 58.640 52.381 6.43 0.00 0.00 2.74
120 121 1.740025 GGGATCAGTTGCAAGTACAGC 59.260 52.381 6.43 0.00 0.00 4.40
121 122 2.426522 GGATCAGTTGCAAGTACAGCA 58.573 47.619 6.43 8.71 40.85 4.41
122 123 2.417933 GGATCAGTTGCAAGTACAGCAG 59.582 50.000 6.43 3.25 43.75 4.24
123 124 2.620251 TCAGTTGCAAGTACAGCAGT 57.380 45.000 6.43 3.15 43.75 4.40
124 125 2.483876 TCAGTTGCAAGTACAGCAGTC 58.516 47.619 6.43 9.94 43.75 3.51
125 126 2.158971 TCAGTTGCAAGTACAGCAGTCA 60.159 45.455 6.43 0.00 43.75 3.41
126 127 2.222678 CAGTTGCAAGTACAGCAGTCAG 59.777 50.000 6.43 5.00 43.75 3.51
127 128 1.069636 GTTGCAAGTACAGCAGTCAGC 60.070 52.381 0.00 0.00 43.75 4.26
136 137 3.745803 GCAGTCAGCAGGCAAGGC 61.746 66.667 0.00 0.00 44.79 4.35
137 138 3.429141 CAGTCAGCAGGCAAGGCG 61.429 66.667 0.00 0.00 36.08 5.52
145 146 4.711949 AGGCAAGGCGCTGGACAG 62.712 66.667 7.64 0.00 41.91 3.51
146 147 4.704833 GGCAAGGCGCTGGACAGA 62.705 66.667 7.64 0.00 41.91 3.41
147 148 2.669569 GCAAGGCGCTGGACAGAA 60.670 61.111 7.64 0.00 37.77 3.02
148 149 2.260869 GCAAGGCGCTGGACAGAAA 61.261 57.895 7.64 0.00 37.77 2.52
149 150 1.871772 CAAGGCGCTGGACAGAAAG 59.128 57.895 7.64 0.00 0.00 2.62
150 151 1.302832 AAGGCGCTGGACAGAAAGG 60.303 57.895 7.64 0.00 0.00 3.11
151 152 2.747855 GGCGCTGGACAGAAAGGG 60.748 66.667 7.64 0.00 0.00 3.95
152 153 3.435186 GCGCTGGACAGAAAGGGC 61.435 66.667 0.00 0.00 43.80 5.19
153 154 3.121030 CGCTGGACAGAAAGGGCG 61.121 66.667 3.00 0.00 36.89 6.13
154 155 3.435186 GCTGGACAGAAAGGGCGC 61.435 66.667 0.00 0.00 0.00 6.53
155 156 2.348998 CTGGACAGAAAGGGCGCT 59.651 61.111 7.64 0.00 0.00 5.92
156 157 2.032528 TGGACAGAAAGGGCGCTG 59.967 61.111 7.64 0.00 38.10 5.18
157 158 2.347490 GGACAGAAAGGGCGCTGA 59.653 61.111 7.64 0.00 36.07 4.26
158 159 2.035442 GGACAGAAAGGGCGCTGAC 61.035 63.158 7.64 1.42 36.07 3.51
159 160 1.301716 GACAGAAAGGGCGCTGACA 60.302 57.895 7.64 0.00 36.07 3.58
160 161 0.884704 GACAGAAAGGGCGCTGACAA 60.885 55.000 7.64 0.00 36.07 3.18
161 162 0.465460 ACAGAAAGGGCGCTGACAAA 60.465 50.000 7.64 0.00 36.07 2.83
162 163 0.239347 CAGAAAGGGCGCTGACAAAG 59.761 55.000 7.64 0.00 34.06 2.77
173 174 1.693467 CTGACAAAGCTACGCGTACA 58.307 50.000 16.41 9.04 0.00 2.90
174 175 1.385743 CTGACAAAGCTACGCGTACAC 59.614 52.381 16.41 10.66 0.00 2.90
175 176 1.269154 TGACAAAGCTACGCGTACACA 60.269 47.619 16.41 0.00 0.00 3.72
176 177 1.788308 GACAAAGCTACGCGTACACAA 59.212 47.619 16.41 0.00 0.00 3.33
177 178 2.203401 ACAAAGCTACGCGTACACAAA 58.797 42.857 16.41 0.00 0.00 2.83
178 179 2.033492 ACAAAGCTACGCGTACACAAAC 60.033 45.455 16.41 0.90 0.00 2.93
179 180 1.142474 AAGCTACGCGTACACAAACC 58.858 50.000 16.41 0.00 0.00 3.27
180 181 0.316204 AGCTACGCGTACACAAACCT 59.684 50.000 16.41 0.48 0.00 3.50
181 182 0.712222 GCTACGCGTACACAAACCTC 59.288 55.000 16.41 0.00 0.00 3.85
182 183 1.931709 GCTACGCGTACACAAACCTCA 60.932 52.381 16.41 0.00 0.00 3.86
183 184 1.717645 CTACGCGTACACAAACCTCAC 59.282 52.381 16.41 0.00 0.00 3.51
184 185 0.103572 ACGCGTACACAAACCTCACT 59.896 50.000 11.67 0.00 0.00 3.41
185 186 0.506932 CGCGTACACAAACCTCACTG 59.493 55.000 0.00 0.00 0.00 3.66
186 187 1.578583 GCGTACACAAACCTCACTGT 58.421 50.000 0.00 0.00 0.00 3.55
187 188 1.937899 GCGTACACAAACCTCACTGTT 59.062 47.619 0.00 0.00 0.00 3.16
188 189 2.353579 GCGTACACAAACCTCACTGTTT 59.646 45.455 0.00 0.00 38.95 2.83
189 190 3.181504 GCGTACACAAACCTCACTGTTTT 60.182 43.478 0.00 0.00 36.33 2.43
190 191 4.034279 GCGTACACAAACCTCACTGTTTTA 59.966 41.667 0.00 0.00 36.33 1.52
191 192 5.734311 CGTACACAAACCTCACTGTTTTAG 58.266 41.667 0.00 0.00 36.33 1.85
192 193 4.632538 ACACAAACCTCACTGTTTTAGC 57.367 40.909 0.00 0.00 36.33 3.09
193 194 4.270008 ACACAAACCTCACTGTTTTAGCT 58.730 39.130 0.00 0.00 36.33 3.32
194 195 4.335594 ACACAAACCTCACTGTTTTAGCTC 59.664 41.667 0.00 0.00 36.33 4.09
195 196 4.576463 CACAAACCTCACTGTTTTAGCTCT 59.424 41.667 0.00 0.00 36.33 4.09
196 197 4.576463 ACAAACCTCACTGTTTTAGCTCTG 59.424 41.667 0.00 0.00 36.33 3.35
197 198 4.689612 AACCTCACTGTTTTAGCTCTGA 57.310 40.909 0.00 0.00 0.00 3.27
198 199 4.264460 ACCTCACTGTTTTAGCTCTGAG 57.736 45.455 0.00 0.00 30.67 3.35
199 200 3.898123 ACCTCACTGTTTTAGCTCTGAGA 59.102 43.478 9.28 0.00 31.86 3.27
200 201 4.530161 ACCTCACTGTTTTAGCTCTGAGAT 59.470 41.667 9.28 4.41 31.86 2.75
201 202 5.108517 CCTCACTGTTTTAGCTCTGAGATC 58.891 45.833 9.28 0.00 31.86 2.75
202 203 5.078411 TCACTGTTTTAGCTCTGAGATCC 57.922 43.478 9.28 0.00 0.00 3.36
203 204 4.774726 TCACTGTTTTAGCTCTGAGATCCT 59.225 41.667 9.28 0.00 0.00 3.24
204 205 4.869297 CACTGTTTTAGCTCTGAGATCCTG 59.131 45.833 9.28 0.00 0.00 3.86
205 206 3.866651 TGTTTTAGCTCTGAGATCCTGC 58.133 45.455 9.28 0.00 0.00 4.85
206 207 3.261643 TGTTTTAGCTCTGAGATCCTGCA 59.738 43.478 9.28 0.00 0.00 4.41
207 208 4.080695 TGTTTTAGCTCTGAGATCCTGCAT 60.081 41.667 9.28 0.00 0.00 3.96
208 209 3.747854 TTAGCTCTGAGATCCTGCATG 57.252 47.619 9.28 0.00 0.00 4.06
209 210 0.107081 AGCTCTGAGATCCTGCATGC 59.893 55.000 11.82 11.82 0.00 4.06
210 211 1.222766 GCTCTGAGATCCTGCATGCG 61.223 60.000 14.09 7.87 0.00 4.73
211 212 0.104487 CTCTGAGATCCTGCATGCGT 59.896 55.000 14.09 0.00 0.00 5.24
212 213 0.538584 TCTGAGATCCTGCATGCGTT 59.461 50.000 14.09 0.00 0.00 4.84
213 214 1.065926 TCTGAGATCCTGCATGCGTTT 60.066 47.619 14.09 0.00 0.00 3.60
214 215 1.063616 CTGAGATCCTGCATGCGTTTG 59.936 52.381 14.09 3.06 0.00 2.93
215 216 1.089920 GAGATCCTGCATGCGTTTGT 58.910 50.000 14.09 0.00 0.00 2.83
216 217 1.063174 GAGATCCTGCATGCGTTTGTC 59.937 52.381 14.09 7.44 0.00 3.18
217 218 1.089920 GATCCTGCATGCGTTTGTCT 58.910 50.000 14.09 0.00 0.00 3.41
218 219 0.806868 ATCCTGCATGCGTTTGTCTG 59.193 50.000 14.09 0.00 0.00 3.51
219 220 0.534877 TCCTGCATGCGTTTGTCTGT 60.535 50.000 14.09 0.00 0.00 3.41
220 221 0.386352 CCTGCATGCGTTTGTCTGTG 60.386 55.000 14.09 0.00 0.00 3.66
221 222 0.587768 CTGCATGCGTTTGTCTGTGA 59.412 50.000 14.09 0.00 0.00 3.58
222 223 0.307453 TGCATGCGTTTGTCTGTGAC 59.693 50.000 14.09 0.00 0.00 3.67
223 224 0.722469 GCATGCGTTTGTCTGTGACG 60.722 55.000 0.00 0.00 39.61 4.35
224 225 0.858583 CATGCGTTTGTCTGTGACGA 59.141 50.000 0.00 0.00 38.99 4.20
225 226 1.260297 CATGCGTTTGTCTGTGACGAA 59.740 47.619 0.00 0.00 38.99 3.85
226 227 1.577468 TGCGTTTGTCTGTGACGAAT 58.423 45.000 4.01 0.00 38.09 3.34
227 228 2.745102 TGCGTTTGTCTGTGACGAATA 58.255 42.857 4.01 0.00 38.09 1.75
228 229 3.322369 TGCGTTTGTCTGTGACGAATAT 58.678 40.909 4.01 0.00 38.09 1.28
229 230 4.487019 TGCGTTTGTCTGTGACGAATATA 58.513 39.130 4.01 0.00 38.09 0.86
230 231 4.561213 TGCGTTTGTCTGTGACGAATATAG 59.439 41.667 4.01 0.00 38.09 1.31
231 232 4.548346 GCGTTTGTCTGTGACGAATATAGC 60.548 45.833 4.01 4.86 38.09 2.97
232 233 4.026804 CGTTTGTCTGTGACGAATATAGCC 60.027 45.833 4.01 0.00 38.09 3.93
233 234 5.109903 GTTTGTCTGTGACGAATATAGCCT 58.890 41.667 4.01 0.00 38.09 4.58
234 235 4.307443 TGTCTGTGACGAATATAGCCTG 57.693 45.455 0.00 0.00 34.95 4.85
235 236 3.068165 TGTCTGTGACGAATATAGCCTGG 59.932 47.826 0.00 0.00 34.95 4.45
236 237 2.035961 TCTGTGACGAATATAGCCTGGC 59.964 50.000 11.65 11.65 0.00 4.85
237 238 1.269569 TGTGACGAATATAGCCTGGCG 60.270 52.381 13.96 0.00 0.00 5.69
238 239 1.037493 TGACGAATATAGCCTGGCGT 58.963 50.000 13.96 8.95 34.39 5.68
239 240 1.269569 TGACGAATATAGCCTGGCGTG 60.270 52.381 13.96 1.90 31.58 5.34
240 241 0.750850 ACGAATATAGCCTGGCGTGT 59.249 50.000 13.96 5.89 0.00 4.49
241 242 1.958579 ACGAATATAGCCTGGCGTGTA 59.041 47.619 13.96 8.04 0.00 2.90
242 243 2.288030 ACGAATATAGCCTGGCGTGTAC 60.288 50.000 13.96 4.08 0.00 2.90
243 244 2.685100 GAATATAGCCTGGCGTGTACC 58.315 52.381 13.96 0.00 0.00 3.34
244 245 0.601558 ATATAGCCTGGCGTGTACCG 59.398 55.000 13.96 0.00 40.40 4.02
245 246 1.457823 TATAGCCTGGCGTGTACCGG 61.458 60.000 13.96 0.00 36.94 5.28
248 249 3.687102 CCTGGCGTGTACCGGTGA 61.687 66.667 19.93 0.00 36.94 4.02
249 250 2.577059 CTGGCGTGTACCGGTGAT 59.423 61.111 19.93 0.00 36.94 3.06
250 251 1.809619 CTGGCGTGTACCGGTGATG 60.810 63.158 19.93 10.36 36.94 3.07
251 252 3.192922 GGCGTGTACCGGTGATGC 61.193 66.667 19.93 19.65 36.94 3.91
252 253 2.433491 GCGTGTACCGGTGATGCA 60.433 61.111 19.93 8.14 36.94 3.96
253 254 1.813753 GCGTGTACCGGTGATGCAT 60.814 57.895 19.93 0.00 36.94 3.96
254 255 1.762222 GCGTGTACCGGTGATGCATC 61.762 60.000 19.93 20.14 36.94 3.91
255 256 0.459411 CGTGTACCGGTGATGCATCA 60.459 55.000 25.42 25.42 0.00 3.07
256 257 1.732941 GTGTACCGGTGATGCATCAA 58.267 50.000 30.24 12.43 38.75 2.57
257 258 2.288666 GTGTACCGGTGATGCATCAAT 58.711 47.619 30.24 17.84 38.75 2.57
258 259 2.287915 GTGTACCGGTGATGCATCAATC 59.712 50.000 30.24 22.47 38.75 2.67
259 260 2.093235 TGTACCGGTGATGCATCAATCA 60.093 45.455 30.24 18.25 38.75 2.57
260 261 1.671979 ACCGGTGATGCATCAATCAG 58.328 50.000 30.24 20.24 37.24 2.90
261 262 0.309922 CCGGTGATGCATCAATCAGC 59.690 55.000 30.24 17.92 46.69 4.26
264 265 2.776312 GTGATGCATCAATCAGCAGG 57.224 50.000 30.24 0.00 44.94 4.85
265 266 2.294979 GTGATGCATCAATCAGCAGGA 58.705 47.619 30.24 1.15 44.94 3.86
266 267 2.290916 GTGATGCATCAATCAGCAGGAG 59.709 50.000 30.24 0.00 44.94 3.69
267 268 2.171870 TGATGCATCAATCAGCAGGAGA 59.828 45.455 26.87 0.00 44.94 3.71
268 269 2.793288 TGCATCAATCAGCAGGAGAA 57.207 45.000 0.00 0.00 35.51 2.87
269 270 2.362736 TGCATCAATCAGCAGGAGAAC 58.637 47.619 0.00 0.00 35.51 3.01
270 271 2.026542 TGCATCAATCAGCAGGAGAACT 60.027 45.455 0.00 0.00 35.51 3.01
279 280 3.401032 CAGGAGAACTGGTACCCCT 57.599 57.895 10.07 4.21 43.70 4.79
280 281 1.196012 CAGGAGAACTGGTACCCCTC 58.804 60.000 10.07 10.33 43.70 4.30
281 282 0.042881 AGGAGAACTGGTACCCCTCC 59.957 60.000 22.24 22.24 42.73 4.30
282 283 1.328430 GGAGAACTGGTACCCCTCCG 61.328 65.000 18.07 3.35 34.75 4.63
289 290 0.706433 TGGTACCCCTCCGTAAGAGT 59.294 55.000 10.07 0.00 41.47 3.24
326 327 9.830975 GATGGCCCAAATGTAAAAATAACTAAT 57.169 29.630 0.00 0.00 0.00 1.73
446 447 3.431912 TCGCGATGCAAATATACATCACC 59.568 43.478 3.71 3.94 42.28 4.02
1288 1747 1.115467 GCCGAAGAAGGAGGATGAGA 58.885 55.000 0.00 0.00 0.00 3.27
1402 1870 1.546961 GACGAAGGAGGAGTTCTGGA 58.453 55.000 0.00 0.00 0.00 3.86
1559 2030 7.835682 ACATCTTCATTTTGGACCATCTATTGA 59.164 33.333 0.00 0.00 0.00 2.57
1645 2116 2.650322 ACACACTTTTTGACGGTCCAT 58.350 42.857 5.55 0.00 0.00 3.41
1708 2179 5.207110 TCTATTGGAGATGCTCTAAGTGC 57.793 43.478 0.00 0.00 34.66 4.40
1709 2180 2.698855 TTGGAGATGCTCTAAGTGCC 57.301 50.000 0.00 0.00 0.00 5.01
1710 2181 0.833287 TGGAGATGCTCTAAGTGCCC 59.167 55.000 0.00 0.00 0.00 5.36
1711 2182 1.127343 GGAGATGCTCTAAGTGCCCT 58.873 55.000 0.00 0.00 0.00 5.19
1712 2183 1.069978 GGAGATGCTCTAAGTGCCCTC 59.930 57.143 0.00 0.00 0.00 4.30
1713 2184 2.038659 GAGATGCTCTAAGTGCCCTCT 58.961 52.381 0.00 0.00 0.00 3.69
1714 2185 2.433970 GAGATGCTCTAAGTGCCCTCTT 59.566 50.000 0.00 0.00 0.00 2.85
1715 2186 2.170187 AGATGCTCTAAGTGCCCTCTTG 59.830 50.000 0.00 0.00 0.00 3.02
1716 2187 1.352083 TGCTCTAAGTGCCCTCTTGT 58.648 50.000 0.00 0.00 0.00 3.16
1717 2188 1.699634 TGCTCTAAGTGCCCTCTTGTT 59.300 47.619 0.00 0.00 0.00 2.83
1718 2189 2.106511 TGCTCTAAGTGCCCTCTTGTTT 59.893 45.455 0.00 0.00 0.00 2.83
1719 2190 2.485814 GCTCTAAGTGCCCTCTTGTTTG 59.514 50.000 0.00 0.00 0.00 2.93
1720 2191 2.485814 CTCTAAGTGCCCTCTTGTTTGC 59.514 50.000 0.00 0.00 0.00 3.68
1721 2192 1.197721 CTAAGTGCCCTCTTGTTTGCG 59.802 52.381 0.00 0.00 0.00 4.85
1722 2193 2.050077 GTGCCCTCTTGTTTGCGC 60.050 61.111 0.00 0.00 0.00 6.09
1723 2194 3.294493 TGCCCTCTTGTTTGCGCC 61.294 61.111 4.18 0.00 0.00 6.53
1724 2195 3.294493 GCCCTCTTGTTTGCGCCA 61.294 61.111 4.18 0.00 0.00 5.69
1725 2196 2.644992 CCCTCTTGTTTGCGCCAC 59.355 61.111 4.18 1.63 0.00 5.01
1726 2197 2.192861 CCCTCTTGTTTGCGCCACA 61.193 57.895 4.18 4.94 0.00 4.17
1727 2198 1.008538 CCTCTTGTTTGCGCCACAC 60.009 57.895 4.18 0.00 0.00 3.82
1728 2199 1.008538 CTCTTGTTTGCGCCACACC 60.009 57.895 4.18 0.00 0.00 4.16
1729 2200 1.723608 CTCTTGTTTGCGCCACACCA 61.724 55.000 4.18 0.00 0.00 4.17
1730 2201 1.299316 CTTGTTTGCGCCACACCAG 60.299 57.895 4.18 0.00 0.00 4.00
1731 2202 1.723608 CTTGTTTGCGCCACACCAGA 61.724 55.000 4.18 0.00 0.00 3.86
1732 2203 1.315981 TTGTTTGCGCCACACCAGAA 61.316 50.000 4.18 0.00 0.00 3.02
1733 2204 1.008538 GTTTGCGCCACACCAGAAG 60.009 57.895 4.18 0.00 0.00 2.85
1734 2205 1.153066 TTTGCGCCACACCAGAAGA 60.153 52.632 4.18 0.00 0.00 2.87
1735 2206 0.749818 TTTGCGCCACACCAGAAGAA 60.750 50.000 4.18 0.00 0.00 2.52
1736 2207 0.537143 TTGCGCCACACCAGAAGAAT 60.537 50.000 4.18 0.00 0.00 2.40
1737 2208 0.955428 TGCGCCACACCAGAAGAATC 60.955 55.000 4.18 0.00 0.00 2.52
1738 2209 0.955428 GCGCCACACCAGAAGAATCA 60.955 55.000 0.00 0.00 0.00 2.57
1739 2210 1.522668 CGCCACACCAGAAGAATCAA 58.477 50.000 0.00 0.00 0.00 2.57
1740 2211 1.466167 CGCCACACCAGAAGAATCAAG 59.534 52.381 0.00 0.00 0.00 3.02
1741 2212 2.783135 GCCACACCAGAAGAATCAAGA 58.217 47.619 0.00 0.00 0.00 3.02
1742 2213 3.350833 GCCACACCAGAAGAATCAAGAT 58.649 45.455 0.00 0.00 0.00 2.40
1743 2214 3.128242 GCCACACCAGAAGAATCAAGATG 59.872 47.826 0.00 0.00 0.00 2.90
1744 2215 4.330250 CCACACCAGAAGAATCAAGATGT 58.670 43.478 0.00 0.00 0.00 3.06
1745 2216 4.155462 CCACACCAGAAGAATCAAGATGTG 59.845 45.833 0.00 0.00 35.74 3.21
1746 2217 4.758674 CACACCAGAAGAATCAAGATGTGT 59.241 41.667 0.00 0.00 35.00 3.72
1747 2218 4.758674 ACACCAGAAGAATCAAGATGTGTG 59.241 41.667 0.00 0.00 33.55 3.82
1748 2219 4.155462 CACCAGAAGAATCAAGATGTGTGG 59.845 45.833 0.00 0.00 0.00 4.17
1749 2220 3.128242 CCAGAAGAATCAAGATGTGTGGC 59.872 47.826 0.00 0.00 0.00 5.01
1750 2221 3.005554 AGAAGAATCAAGATGTGTGGCG 58.994 45.455 0.00 0.00 0.00 5.69
1751 2222 1.089920 AGAATCAAGATGTGTGGCGC 58.910 50.000 0.00 0.00 0.00 6.53
1752 2223 0.804364 GAATCAAGATGTGTGGCGCA 59.196 50.000 10.83 0.00 0.00 6.09
1753 2224 1.199789 GAATCAAGATGTGTGGCGCAA 59.800 47.619 10.83 0.00 0.00 4.85
1754 2225 0.806868 ATCAAGATGTGTGGCGCAAG 59.193 50.000 10.83 0.00 43.44 4.01
1755 2226 1.210931 CAAGATGTGTGGCGCAAGG 59.789 57.895 10.83 0.00 38.28 3.61
1756 2227 1.973281 AAGATGTGTGGCGCAAGGG 60.973 57.895 10.83 0.00 38.28 3.95
1757 2228 4.120331 GATGTGTGGCGCAAGGGC 62.120 66.667 10.83 0.00 42.69 5.19
1764 2235 2.049156 GGCGCAAGGGCAAAGAAC 60.049 61.111 10.83 0.00 41.24 3.01
1765 2236 2.564721 GGCGCAAGGGCAAAGAACT 61.565 57.895 10.83 0.00 41.24 3.01
1766 2237 1.081175 GCGCAAGGGCAAAGAACTC 60.081 57.895 0.30 0.00 41.24 3.01
1767 2238 1.207593 CGCAAGGGCAAAGAACTCG 59.792 57.895 0.00 0.00 41.24 4.18
1768 2239 1.227999 CGCAAGGGCAAAGAACTCGA 61.228 55.000 0.00 0.00 41.24 4.04
1769 2240 1.168714 GCAAGGGCAAAGAACTCGAT 58.831 50.000 0.00 0.00 40.72 3.59
1770 2241 1.131315 GCAAGGGCAAAGAACTCGATC 59.869 52.381 0.00 0.00 40.72 3.69
1771 2242 2.426522 CAAGGGCAAAGAACTCGATCA 58.573 47.619 0.00 0.00 0.00 2.92
1772 2243 3.012518 CAAGGGCAAAGAACTCGATCAT 58.987 45.455 0.00 0.00 0.00 2.45
1773 2244 2.911484 AGGGCAAAGAACTCGATCATC 58.089 47.619 0.00 0.00 0.00 2.92
1774 2245 2.237143 AGGGCAAAGAACTCGATCATCA 59.763 45.455 0.00 0.00 0.00 3.07
1775 2246 2.611292 GGGCAAAGAACTCGATCATCAG 59.389 50.000 0.00 0.00 0.00 2.90
1776 2247 3.265791 GGCAAAGAACTCGATCATCAGT 58.734 45.455 0.00 0.00 0.00 3.41
1777 2248 3.308323 GGCAAAGAACTCGATCATCAGTC 59.692 47.826 0.00 0.00 0.00 3.51
1778 2249 3.928992 GCAAAGAACTCGATCATCAGTCA 59.071 43.478 0.00 0.00 0.00 3.41
1779 2250 4.569966 GCAAAGAACTCGATCATCAGTCAT 59.430 41.667 0.00 0.00 0.00 3.06
1780 2251 5.276773 GCAAAGAACTCGATCATCAGTCATC 60.277 44.000 0.00 0.00 0.00 2.92
1781 2252 5.588958 AAGAACTCGATCATCAGTCATCA 57.411 39.130 0.00 0.00 0.00 3.07
1782 2253 4.930963 AGAACTCGATCATCAGTCATCAC 58.069 43.478 0.00 0.00 0.00 3.06
1783 2254 4.400567 AGAACTCGATCATCAGTCATCACA 59.599 41.667 0.00 0.00 0.00 3.58
1784 2255 4.933505 ACTCGATCATCAGTCATCACAT 57.066 40.909 0.00 0.00 0.00 3.21
1785 2256 4.869215 ACTCGATCATCAGTCATCACATC 58.131 43.478 0.00 0.00 0.00 3.06
1786 2257 4.236147 CTCGATCATCAGTCATCACATCC 58.764 47.826 0.00 0.00 0.00 3.51
1787 2258 3.638160 TCGATCATCAGTCATCACATCCA 59.362 43.478 0.00 0.00 0.00 3.41
1788 2259 3.739810 CGATCATCAGTCATCACATCCAC 59.260 47.826 0.00 0.00 0.00 4.02
1789 2260 3.169355 TCATCAGTCATCACATCCACG 57.831 47.619 0.00 0.00 0.00 4.94
1790 2261 1.596260 CATCAGTCATCACATCCACGC 59.404 52.381 0.00 0.00 0.00 5.34
1791 2262 0.458370 TCAGTCATCACATCCACGCG 60.458 55.000 3.53 3.53 0.00 6.01
1792 2263 1.811266 AGTCATCACATCCACGCGC 60.811 57.895 5.73 0.00 0.00 6.86
1793 2264 2.511373 TCATCACATCCACGCGCC 60.511 61.111 5.73 0.00 0.00 6.53
1794 2265 2.819154 CATCACATCCACGCGCCA 60.819 61.111 5.73 0.00 0.00 5.69
1795 2266 2.046411 ATCACATCCACGCGCCAA 60.046 55.556 5.73 0.00 0.00 4.52
1796 2267 2.398554 ATCACATCCACGCGCCAAC 61.399 57.895 5.73 0.00 0.00 3.77
1797 2268 3.353029 CACATCCACGCGCCAACA 61.353 61.111 5.73 0.00 0.00 3.33
1798 2269 2.593148 ACATCCACGCGCCAACAA 60.593 55.556 5.73 0.00 0.00 2.83
1799 2270 2.126888 CATCCACGCGCCAACAAC 60.127 61.111 5.73 0.00 0.00 3.32
1800 2271 2.593148 ATCCACGCGCCAACAACA 60.593 55.556 5.73 0.00 0.00 3.33
1801 2272 2.616330 ATCCACGCGCCAACAACAG 61.616 57.895 5.73 0.00 0.00 3.16
1802 2273 4.326766 CCACGCGCCAACAACAGG 62.327 66.667 5.73 0.00 0.00 4.00
1803 2274 4.326766 CACGCGCCAACAACAGGG 62.327 66.667 5.73 0.00 0.00 4.45
1804 2275 4.555709 ACGCGCCAACAACAGGGA 62.556 61.111 5.73 0.00 0.00 4.20
1805 2276 4.025401 CGCGCCAACAACAGGGAC 62.025 66.667 0.00 0.00 0.00 4.46
1806 2277 2.594592 GCGCCAACAACAGGGACT 60.595 61.111 0.00 0.00 43.88 3.85
1807 2278 2.617274 GCGCCAACAACAGGGACTC 61.617 63.158 0.00 0.00 34.60 3.36
1808 2279 2.317609 CGCCAACAACAGGGACTCG 61.318 63.158 0.00 0.00 34.60 4.18
1809 2280 1.227853 GCCAACAACAGGGACTCGT 60.228 57.895 0.00 0.00 34.60 4.18
1810 2281 1.228657 GCCAACAACAGGGACTCGTC 61.229 60.000 0.00 0.00 34.60 4.20
1967 2439 4.344865 GGCGGACCCAGGCAGAAA 62.345 66.667 0.00 0.00 0.00 2.52
2076 2554 1.076014 TTTCTTCCCGCTTTCCCCC 59.924 57.895 0.00 0.00 0.00 5.40
2101 2579 2.042979 CCCTCCCATTTTCTCCTTTCCA 59.957 50.000 0.00 0.00 0.00 3.53
2124 2602 1.764054 CCAATCTCCCTCCCGCTCT 60.764 63.158 0.00 0.00 0.00 4.09
2449 2929 3.760035 CCACGCCCAGTACGCTCT 61.760 66.667 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.681978 ACCAGTCGCGCAGAACCC 62.682 66.667 8.75 0.00 0.00 4.11
5 6 3.414700 CACCAGTCGCGCAGAACC 61.415 66.667 8.75 0.00 0.00 3.62
6 7 2.661866 ACACCAGTCGCGCAGAAC 60.662 61.111 8.75 1.77 0.00 3.01
7 8 2.661537 CACACCAGTCGCGCAGAA 60.662 61.111 8.75 0.00 0.00 3.02
8 9 4.662961 CCACACCAGTCGCGCAGA 62.663 66.667 8.75 2.49 0.00 4.26
9 10 4.969196 ACCACACCAGTCGCGCAG 62.969 66.667 8.75 0.00 0.00 5.18
10 11 4.539083 AACCACACCAGTCGCGCA 62.539 61.111 8.75 0.00 0.00 6.09
11 12 4.012895 CAACCACACCAGTCGCGC 62.013 66.667 0.00 0.00 0.00 6.86
12 13 3.345808 CCAACCACACCAGTCGCG 61.346 66.667 0.00 0.00 0.00 5.87
13 14 2.203153 ACCAACCACACCAGTCGC 60.203 61.111 0.00 0.00 0.00 5.19
14 15 2.542907 GCACCAACCACACCAGTCG 61.543 63.158 0.00 0.00 0.00 4.18
15 16 2.542907 CGCACCAACCACACCAGTC 61.543 63.158 0.00 0.00 0.00 3.51
16 17 2.515991 CGCACCAACCACACCAGT 60.516 61.111 0.00 0.00 0.00 4.00
17 18 2.118404 AACGCACCAACCACACCAG 61.118 57.895 0.00 0.00 0.00 4.00
18 19 2.044848 AACGCACCAACCACACCA 60.045 55.556 0.00 0.00 0.00 4.17
19 20 2.058829 CTCAACGCACCAACCACACC 62.059 60.000 0.00 0.00 0.00 4.16
20 21 1.355210 CTCAACGCACCAACCACAC 59.645 57.895 0.00 0.00 0.00 3.82
21 22 2.477176 GCTCAACGCACCAACCACA 61.477 57.895 0.00 0.00 38.92 4.17
22 23 2.331451 GCTCAACGCACCAACCAC 59.669 61.111 0.00 0.00 38.92 4.16
23 24 2.124529 TGCTCAACGCACCAACCA 60.125 55.556 0.00 0.00 45.47 3.67
31 32 1.201921 CCACGAAGTTATGCTCAACGC 60.202 52.381 0.00 0.00 41.61 4.84
32 33 1.393539 CCCACGAAGTTATGCTCAACG 59.606 52.381 0.00 0.00 41.61 4.10
33 34 1.737793 CCCCACGAAGTTATGCTCAAC 59.262 52.381 0.00 0.00 41.61 3.18
34 35 1.349688 ACCCCACGAAGTTATGCTCAA 59.650 47.619 0.00 0.00 41.61 3.02
35 36 0.981183 ACCCCACGAAGTTATGCTCA 59.019 50.000 0.00 0.00 41.61 4.26
36 37 2.007608 GAACCCCACGAAGTTATGCTC 58.992 52.381 0.00 0.00 41.61 4.26
37 38 1.674817 CGAACCCCACGAAGTTATGCT 60.675 52.381 0.00 0.00 41.61 3.79
38 39 0.725117 CGAACCCCACGAAGTTATGC 59.275 55.000 0.00 0.00 41.61 3.14
39 40 1.365699 CCGAACCCCACGAAGTTATG 58.634 55.000 0.00 0.00 41.61 1.90
40 41 0.251073 CCCGAACCCCACGAAGTTAT 59.749 55.000 0.00 0.00 41.61 1.89
41 42 1.120795 ACCCGAACCCCACGAAGTTA 61.121 55.000 0.00 0.00 41.61 2.24
42 43 2.428622 CCCGAACCCCACGAAGTT 59.571 61.111 0.00 0.00 41.61 2.66
44 45 2.180159 ATCACCCGAACCCCACGAAG 62.180 60.000 0.00 0.00 0.00 3.79
45 46 1.770749 AATCACCCGAACCCCACGAA 61.771 55.000 0.00 0.00 0.00 3.85
46 47 2.218454 AATCACCCGAACCCCACGA 61.218 57.895 0.00 0.00 0.00 4.35
47 48 2.038269 CAATCACCCGAACCCCACG 61.038 63.158 0.00 0.00 0.00 4.94
48 49 1.677633 CCAATCACCCGAACCCCAC 60.678 63.158 0.00 0.00 0.00 4.61
49 50 1.721093 AACCAATCACCCGAACCCCA 61.721 55.000 0.00 0.00 0.00 4.96
50 51 1.076014 AACCAATCACCCGAACCCC 59.924 57.895 0.00 0.00 0.00 4.95
51 52 1.248101 CCAACCAATCACCCGAACCC 61.248 60.000 0.00 0.00 0.00 4.11
52 53 1.873270 GCCAACCAATCACCCGAACC 61.873 60.000 0.00 0.00 0.00 3.62
53 54 1.584495 GCCAACCAATCACCCGAAC 59.416 57.895 0.00 0.00 0.00 3.95
54 55 1.969064 CGCCAACCAATCACCCGAA 60.969 57.895 0.00 0.00 0.00 4.30
55 56 2.359354 CGCCAACCAATCACCCGA 60.359 61.111 0.00 0.00 0.00 5.14
56 57 3.439540 CCGCCAACCAATCACCCG 61.440 66.667 0.00 0.00 0.00 5.28
57 58 1.906333 AACCGCCAACCAATCACCC 60.906 57.895 0.00 0.00 0.00 4.61
58 59 1.288752 CAACCGCCAACCAATCACC 59.711 57.895 0.00 0.00 0.00 4.02
59 60 1.288752 CCAACCGCCAACCAATCAC 59.711 57.895 0.00 0.00 0.00 3.06
60 61 1.905843 CCCAACCGCCAACCAATCA 60.906 57.895 0.00 0.00 0.00 2.57
61 62 0.609681 TACCCAACCGCCAACCAATC 60.610 55.000 0.00 0.00 0.00 2.67
62 63 0.610785 CTACCCAACCGCCAACCAAT 60.611 55.000 0.00 0.00 0.00 3.16
63 64 1.228306 CTACCCAACCGCCAACCAA 60.228 57.895 0.00 0.00 0.00 3.67
64 65 2.432563 CTACCCAACCGCCAACCA 59.567 61.111 0.00 0.00 0.00 3.67
65 66 2.360726 CCTACCCAACCGCCAACC 60.361 66.667 0.00 0.00 0.00 3.77
66 67 3.060000 GCCTACCCAACCGCCAAC 61.060 66.667 0.00 0.00 0.00 3.77
67 68 3.561120 CTGCCTACCCAACCGCCAA 62.561 63.158 0.00 0.00 0.00 4.52
68 69 4.028490 CTGCCTACCCAACCGCCA 62.028 66.667 0.00 0.00 0.00 5.69
70 71 3.026431 TAGCTGCCTACCCAACCGC 62.026 63.158 0.00 0.00 0.00 5.68
71 72 1.153429 GTAGCTGCCTACCCAACCG 60.153 63.158 0.00 0.00 38.38 4.44
72 73 4.957164 GTAGCTGCCTACCCAACC 57.043 61.111 0.00 0.00 38.38 3.77
78 79 0.178301 GAGGTTGGGTAGCTGCCTAC 59.822 60.000 21.02 17.43 42.60 3.18
79 80 0.981277 GGAGGTTGGGTAGCTGCCTA 60.981 60.000 21.02 12.45 36.79 3.93
80 81 2.301738 GGAGGTTGGGTAGCTGCCT 61.302 63.158 21.02 0.00 36.79 4.75
81 82 2.272471 GGAGGTTGGGTAGCTGCC 59.728 66.667 13.24 13.24 36.79 4.85
82 83 2.125106 CGGAGGTTGGGTAGCTGC 60.125 66.667 0.00 0.00 39.11 5.25
95 96 0.745845 CTTGCAACTGATCCCCGGAG 60.746 60.000 0.73 0.00 0.00 4.63
96 97 1.299648 CTTGCAACTGATCCCCGGA 59.700 57.895 0.73 0.00 0.00 5.14
97 98 0.251916 TACTTGCAACTGATCCCCGG 59.748 55.000 0.00 0.00 0.00 5.73
98 99 1.338674 TGTACTTGCAACTGATCCCCG 60.339 52.381 0.00 0.00 0.00 5.73
99 100 2.359900 CTGTACTTGCAACTGATCCCC 58.640 52.381 0.00 0.00 0.00 4.81
100 101 1.740025 GCTGTACTTGCAACTGATCCC 59.260 52.381 0.00 0.00 0.00 3.85
101 102 2.417933 CTGCTGTACTTGCAACTGATCC 59.582 50.000 13.38 0.00 40.13 3.36
102 103 3.070018 ACTGCTGTACTTGCAACTGATC 58.930 45.455 13.38 0.00 40.13 2.92
103 104 3.070018 GACTGCTGTACTTGCAACTGAT 58.930 45.455 13.38 0.00 40.13 2.90
104 105 2.158971 TGACTGCTGTACTTGCAACTGA 60.159 45.455 13.38 0.00 40.13 3.41
105 106 2.212652 TGACTGCTGTACTTGCAACTG 58.787 47.619 13.38 6.60 40.13 3.16
106 107 2.487934 CTGACTGCTGTACTTGCAACT 58.512 47.619 13.38 0.00 40.13 3.16
107 108 1.069636 GCTGACTGCTGTACTTGCAAC 60.070 52.381 13.38 11.13 40.13 4.17
108 109 1.229428 GCTGACTGCTGTACTTGCAA 58.771 50.000 13.38 0.00 40.13 4.08
109 110 0.106521 TGCTGACTGCTGTACTTGCA 59.893 50.000 12.19 12.19 43.37 4.08
110 111 0.795085 CTGCTGACTGCTGTACTTGC 59.205 55.000 5.87 0.00 43.37 4.01
111 112 1.436600 CCTGCTGACTGCTGTACTTG 58.563 55.000 5.87 0.00 43.37 3.16
112 113 0.321122 GCCTGCTGACTGCTGTACTT 60.321 55.000 5.87 0.00 43.37 2.24
113 114 1.294780 GCCTGCTGACTGCTGTACT 59.705 57.895 5.87 0.00 43.37 2.73
114 115 0.603707 TTGCCTGCTGACTGCTGTAC 60.604 55.000 5.87 0.00 43.37 2.90
115 116 0.321034 CTTGCCTGCTGACTGCTGTA 60.321 55.000 5.87 0.00 43.37 2.74
116 117 1.600076 CTTGCCTGCTGACTGCTGT 60.600 57.895 5.87 0.00 43.37 4.40
117 118 2.333417 CCTTGCCTGCTGACTGCTG 61.333 63.158 5.87 5.14 43.37 4.41
118 119 2.033757 CCTTGCCTGCTGACTGCT 59.966 61.111 5.87 0.00 43.37 4.24
119 120 3.745803 GCCTTGCCTGCTGACTGC 61.746 66.667 0.00 0.00 43.25 4.40
120 121 3.429141 CGCCTTGCCTGCTGACTG 61.429 66.667 0.00 0.00 0.00 3.51
130 131 2.192608 CTTTCTGTCCAGCGCCTTGC 62.193 60.000 2.29 0.00 46.98 4.01
131 132 1.580845 CCTTTCTGTCCAGCGCCTTG 61.581 60.000 2.29 0.00 0.00 3.61
132 133 1.302832 CCTTTCTGTCCAGCGCCTT 60.303 57.895 2.29 0.00 0.00 4.35
133 134 2.348998 CCTTTCTGTCCAGCGCCT 59.651 61.111 2.29 0.00 0.00 5.52
134 135 2.747855 CCCTTTCTGTCCAGCGCC 60.748 66.667 2.29 0.00 0.00 6.53
135 136 3.435186 GCCCTTTCTGTCCAGCGC 61.435 66.667 0.00 0.00 0.00 5.92
136 137 3.121030 CGCCCTTTCTGTCCAGCG 61.121 66.667 0.00 0.00 37.39 5.18
137 138 3.435186 GCGCCCTTTCTGTCCAGC 61.435 66.667 0.00 0.00 0.00 4.85
138 139 2.037136 CAGCGCCCTTTCTGTCCAG 61.037 63.158 2.29 0.00 0.00 3.86
139 140 2.032528 CAGCGCCCTTTCTGTCCA 59.967 61.111 2.29 0.00 0.00 4.02
140 141 2.035442 GTCAGCGCCCTTTCTGTCC 61.035 63.158 2.29 0.00 0.00 4.02
141 142 0.884704 TTGTCAGCGCCCTTTCTGTC 60.885 55.000 2.29 0.00 0.00 3.51
142 143 0.465460 TTTGTCAGCGCCCTTTCTGT 60.465 50.000 2.29 0.00 0.00 3.41
143 144 0.239347 CTTTGTCAGCGCCCTTTCTG 59.761 55.000 2.29 0.00 0.00 3.02
144 145 1.518903 GCTTTGTCAGCGCCCTTTCT 61.519 55.000 2.29 0.00 39.29 2.52
145 146 1.081175 GCTTTGTCAGCGCCCTTTC 60.081 57.895 2.29 0.00 39.29 2.62
146 147 3.042560 GCTTTGTCAGCGCCCTTT 58.957 55.556 2.29 0.00 39.29 3.11
163 164 1.717645 GTGAGGTTTGTGTACGCGTAG 59.282 52.381 21.25 0.00 0.00 3.51
164 165 1.337703 AGTGAGGTTTGTGTACGCGTA 59.662 47.619 16.41 16.41 0.00 4.42
165 166 0.103572 AGTGAGGTTTGTGTACGCGT 59.896 50.000 19.17 19.17 0.00 6.01
166 167 0.506932 CAGTGAGGTTTGTGTACGCG 59.493 55.000 3.53 3.53 0.00 6.01
167 168 1.578583 ACAGTGAGGTTTGTGTACGC 58.421 50.000 0.00 0.00 0.00 4.42
168 169 4.609691 AAAACAGTGAGGTTTGTGTACG 57.390 40.909 0.00 0.00 40.64 3.67
169 170 5.296035 AGCTAAAACAGTGAGGTTTGTGTAC 59.704 40.000 0.00 0.00 40.64 2.90
170 171 5.433526 AGCTAAAACAGTGAGGTTTGTGTA 58.566 37.500 0.00 0.00 40.64 2.90
171 172 4.270008 AGCTAAAACAGTGAGGTTTGTGT 58.730 39.130 0.00 0.00 40.64 3.72
172 173 4.576463 AGAGCTAAAACAGTGAGGTTTGTG 59.424 41.667 0.00 0.00 40.64 3.33
173 174 4.576463 CAGAGCTAAAACAGTGAGGTTTGT 59.424 41.667 0.00 0.00 40.64 2.83
174 175 4.816385 TCAGAGCTAAAACAGTGAGGTTTG 59.184 41.667 0.00 0.00 40.64 2.93
175 176 5.036117 TCAGAGCTAAAACAGTGAGGTTT 57.964 39.130 0.00 0.00 42.49 3.27
176 177 4.345257 TCTCAGAGCTAAAACAGTGAGGTT 59.655 41.667 0.00 0.00 33.66 3.50
177 178 3.898123 TCTCAGAGCTAAAACAGTGAGGT 59.102 43.478 0.00 0.00 33.66 3.85
178 179 4.527509 TCTCAGAGCTAAAACAGTGAGG 57.472 45.455 0.00 0.00 33.66 3.86
179 180 5.105392 AGGATCTCAGAGCTAAAACAGTGAG 60.105 44.000 0.00 0.00 34.06 3.51
180 181 4.774726 AGGATCTCAGAGCTAAAACAGTGA 59.225 41.667 0.00 0.00 0.00 3.41
181 182 4.869297 CAGGATCTCAGAGCTAAAACAGTG 59.131 45.833 0.00 0.00 0.00 3.66
182 183 4.622695 GCAGGATCTCAGAGCTAAAACAGT 60.623 45.833 0.00 0.00 0.00 3.55
183 184 3.870419 GCAGGATCTCAGAGCTAAAACAG 59.130 47.826 0.00 0.00 0.00 3.16
184 185 3.261643 TGCAGGATCTCAGAGCTAAAACA 59.738 43.478 0.00 0.00 0.00 2.83
185 186 3.866651 TGCAGGATCTCAGAGCTAAAAC 58.133 45.455 0.00 0.00 0.00 2.43
186 187 4.449131 CATGCAGGATCTCAGAGCTAAAA 58.551 43.478 0.00 0.00 0.00 1.52
187 188 3.743584 GCATGCAGGATCTCAGAGCTAAA 60.744 47.826 14.21 0.00 0.00 1.85
188 189 2.224233 GCATGCAGGATCTCAGAGCTAA 60.224 50.000 14.21 0.00 0.00 3.09
189 190 1.343789 GCATGCAGGATCTCAGAGCTA 59.656 52.381 14.21 0.00 0.00 3.32
190 191 0.107081 GCATGCAGGATCTCAGAGCT 59.893 55.000 14.21 0.00 0.00 4.09
191 192 1.222766 CGCATGCAGGATCTCAGAGC 61.223 60.000 19.57 0.00 0.00 4.09
192 193 0.104487 ACGCATGCAGGATCTCAGAG 59.896 55.000 19.57 0.00 0.00 3.35
193 194 0.538584 AACGCATGCAGGATCTCAGA 59.461 50.000 19.57 0.00 0.00 3.27
194 195 1.063616 CAAACGCATGCAGGATCTCAG 59.936 52.381 19.57 0.00 0.00 3.35
195 196 1.089112 CAAACGCATGCAGGATCTCA 58.911 50.000 19.57 0.00 0.00 3.27
196 197 1.063174 GACAAACGCATGCAGGATCTC 59.937 52.381 19.57 0.49 0.00 2.75
197 198 1.089920 GACAAACGCATGCAGGATCT 58.910 50.000 19.57 0.00 0.00 2.75
198 199 1.089920 AGACAAACGCATGCAGGATC 58.910 50.000 19.57 8.10 0.00 3.36
199 200 0.806868 CAGACAAACGCATGCAGGAT 59.193 50.000 19.57 0.00 0.00 3.24
200 201 0.534877 ACAGACAAACGCATGCAGGA 60.535 50.000 19.57 0.00 0.00 3.86
201 202 0.386352 CACAGACAAACGCATGCAGG 60.386 55.000 19.57 4.59 0.00 4.85
202 203 0.587768 TCACAGACAAACGCATGCAG 59.412 50.000 19.57 12.98 0.00 4.41
203 204 0.307453 GTCACAGACAAACGCATGCA 59.693 50.000 19.57 0.00 32.09 3.96
204 205 0.722469 CGTCACAGACAAACGCATGC 60.722 55.000 7.91 7.91 32.09 4.06
205 206 0.858583 TCGTCACAGACAAACGCATG 59.141 50.000 0.00 0.00 36.40 4.06
206 207 1.577468 TTCGTCACAGACAAACGCAT 58.423 45.000 0.00 0.00 36.40 4.73
207 208 1.577468 ATTCGTCACAGACAAACGCA 58.423 45.000 0.00 0.00 36.40 5.24
208 209 3.991605 ATATTCGTCACAGACAAACGC 57.008 42.857 0.00 0.00 36.40 4.84
209 210 4.026804 GGCTATATTCGTCACAGACAAACG 60.027 45.833 0.00 0.00 37.74 3.60
210 211 5.005779 CAGGCTATATTCGTCACAGACAAAC 59.994 44.000 0.00 0.00 32.09 2.93
211 212 5.109210 CAGGCTATATTCGTCACAGACAAA 58.891 41.667 0.00 0.00 32.09 2.83
212 213 4.441495 CCAGGCTATATTCGTCACAGACAA 60.441 45.833 0.00 0.00 32.09 3.18
213 214 3.068165 CCAGGCTATATTCGTCACAGACA 59.932 47.826 0.00 0.00 32.09 3.41
214 215 3.643763 CCAGGCTATATTCGTCACAGAC 58.356 50.000 0.00 0.00 0.00 3.51
215 216 2.035961 GCCAGGCTATATTCGTCACAGA 59.964 50.000 3.29 0.00 0.00 3.41
216 217 2.408050 GCCAGGCTATATTCGTCACAG 58.592 52.381 3.29 0.00 0.00 3.66
217 218 1.269569 CGCCAGGCTATATTCGTCACA 60.270 52.381 10.54 0.00 0.00 3.58
218 219 1.269621 ACGCCAGGCTATATTCGTCAC 60.270 52.381 10.54 0.00 0.00 3.67
219 220 1.037493 ACGCCAGGCTATATTCGTCA 58.963 50.000 10.54 0.00 0.00 4.35
220 221 1.269621 ACACGCCAGGCTATATTCGTC 60.270 52.381 10.54 0.00 0.00 4.20
221 222 0.750850 ACACGCCAGGCTATATTCGT 59.249 50.000 10.54 0.00 0.00 3.85
222 223 2.325761 GTACACGCCAGGCTATATTCG 58.674 52.381 10.54 0.00 0.00 3.34
223 224 2.685100 GGTACACGCCAGGCTATATTC 58.315 52.381 10.54 0.00 0.00 1.75
224 225 1.000506 CGGTACACGCCAGGCTATATT 59.999 52.381 10.54 0.00 34.82 1.28
225 226 0.601558 CGGTACACGCCAGGCTATAT 59.398 55.000 10.54 0.00 34.82 0.86
226 227 1.457823 CCGGTACACGCCAGGCTATA 61.458 60.000 10.54 0.00 42.52 1.31
227 228 2.792947 CCGGTACACGCCAGGCTAT 61.793 63.158 10.54 0.00 42.52 2.97
228 229 3.454573 CCGGTACACGCCAGGCTA 61.455 66.667 10.54 0.00 42.52 3.93
231 232 3.014085 ATCACCGGTACACGCCAGG 62.014 63.158 6.87 0.00 42.52 4.45
232 233 1.809619 CATCACCGGTACACGCCAG 60.810 63.158 6.87 0.00 42.52 4.85
233 234 2.263227 CATCACCGGTACACGCCA 59.737 61.111 6.87 0.00 42.52 5.69
234 235 3.192922 GCATCACCGGTACACGCC 61.193 66.667 6.87 0.00 42.52 5.68
235 236 1.762222 GATGCATCACCGGTACACGC 61.762 60.000 21.92 8.76 42.52 5.34
236 237 0.459411 TGATGCATCACCGGTACACG 60.459 55.000 25.42 0.00 43.80 4.49
237 238 1.732941 TTGATGCATCACCGGTACAC 58.267 50.000 28.72 0.00 36.36 2.90
238 239 2.093235 TGATTGATGCATCACCGGTACA 60.093 45.455 28.72 17.57 36.36 2.90
239 240 2.545526 CTGATTGATGCATCACCGGTAC 59.454 50.000 28.72 15.50 36.36 3.34
240 241 2.837498 CTGATTGATGCATCACCGGTA 58.163 47.619 28.72 14.51 36.36 4.02
241 242 1.671979 CTGATTGATGCATCACCGGT 58.328 50.000 28.72 14.81 36.36 5.28
242 243 0.309922 GCTGATTGATGCATCACCGG 59.690 55.000 28.72 25.35 36.36 5.28
243 244 1.002792 CTGCTGATTGATGCATCACCG 60.003 52.381 28.72 15.32 38.59 4.94
244 245 1.337071 CCTGCTGATTGATGCATCACC 59.663 52.381 28.72 21.96 38.59 4.02
245 246 2.290916 CTCCTGCTGATTGATGCATCAC 59.709 50.000 28.72 18.42 38.59 3.06
246 247 2.171870 TCTCCTGCTGATTGATGCATCA 59.828 45.455 25.42 25.42 38.59 3.07
247 248 2.847441 TCTCCTGCTGATTGATGCATC 58.153 47.619 20.14 20.14 38.59 3.91
248 249 2.950309 GTTCTCCTGCTGATTGATGCAT 59.050 45.455 0.00 0.00 38.59 3.96
249 250 2.026542 AGTTCTCCTGCTGATTGATGCA 60.027 45.455 0.00 0.00 37.63 3.96
250 251 2.355132 CAGTTCTCCTGCTGATTGATGC 59.645 50.000 0.00 0.00 34.87 3.91
251 252 2.943690 CCAGTTCTCCTGCTGATTGATG 59.056 50.000 0.00 0.00 40.06 3.07
252 253 2.575279 ACCAGTTCTCCTGCTGATTGAT 59.425 45.455 0.00 0.00 40.06 2.57
253 254 1.980765 ACCAGTTCTCCTGCTGATTGA 59.019 47.619 0.00 0.00 40.06 2.57
254 255 2.486472 ACCAGTTCTCCTGCTGATTG 57.514 50.000 0.00 0.00 40.06 2.67
255 256 2.237392 GGTACCAGTTCTCCTGCTGATT 59.763 50.000 7.15 0.00 40.06 2.57
256 257 1.834263 GGTACCAGTTCTCCTGCTGAT 59.166 52.381 7.15 0.00 40.06 2.90
257 258 1.267121 GGTACCAGTTCTCCTGCTGA 58.733 55.000 7.15 0.00 40.06 4.26
258 259 3.842869 GGTACCAGTTCTCCTGCTG 57.157 57.895 7.15 0.00 40.06 4.41
272 273 4.071423 GAGATACTCTTACGGAGGGGTAC 58.929 52.174 0.00 0.00 45.83 3.34
273 274 3.073650 GGAGATACTCTTACGGAGGGGTA 59.926 52.174 0.00 0.00 45.83 3.69
274 275 2.158490 GGAGATACTCTTACGGAGGGGT 60.158 54.545 0.00 0.00 45.83 4.95
275 276 2.158505 TGGAGATACTCTTACGGAGGGG 60.159 54.545 0.00 0.00 45.83 4.79
276 277 3.225177 TGGAGATACTCTTACGGAGGG 57.775 52.381 0.00 0.00 45.83 4.30
277 278 6.239396 TCTATTGGAGATACTCTTACGGAGG 58.761 44.000 0.00 0.00 45.83 4.30
278 279 7.757526 CATCTATTGGAGATACTCTTACGGAG 58.242 42.308 0.00 0.00 43.52 4.63
279 280 7.689446 CATCTATTGGAGATACTCTTACGGA 57.311 40.000 0.00 0.00 43.52 4.69
385 386 3.682292 GAGGAGGCCGCGGTTCAAT 62.682 63.158 28.70 16.24 0.00 2.57
408 409 1.196808 CGCGAGGTGTTGCATTTTACT 59.803 47.619 0.00 0.00 31.63 2.24
946 1388 1.817911 TACGTGCCGATCCACCAACA 61.818 55.000 0.00 0.00 32.10 3.33
1402 1870 1.215647 CGGAGCTACGGAACTGCTT 59.784 57.895 11.59 0.00 37.16 3.91
1627 2098 6.399639 AAAATATGGACCGTCAAAAAGTGT 57.600 33.333 0.00 0.00 0.00 3.55
1645 2116 6.259167 CGGTCCAAAATCGGAGATGTAAAATA 59.741 38.462 0.00 0.00 45.12 1.40
1706 2177 3.294493 GGCGCAAACAAGAGGGCA 61.294 61.111 10.83 0.00 44.46 5.36
1707 2178 3.294493 TGGCGCAAACAAGAGGGC 61.294 61.111 10.83 0.00 42.26 5.19
1708 2179 2.192861 TGTGGCGCAAACAAGAGGG 61.193 57.895 10.83 0.00 0.00 4.30
1709 2180 1.008538 GTGTGGCGCAAACAAGAGG 60.009 57.895 15.71 0.00 0.00 3.69
1710 2181 1.008538 GGTGTGGCGCAAACAAGAG 60.009 57.895 15.71 0.00 0.00 2.85
1711 2182 1.723608 CTGGTGTGGCGCAAACAAGA 61.724 55.000 15.71 5.80 23.86 3.02
1712 2183 1.299316 CTGGTGTGGCGCAAACAAG 60.299 57.895 15.71 6.55 0.00 3.16
1713 2184 1.315981 TTCTGGTGTGGCGCAAACAA 61.316 50.000 15.71 0.26 0.00 2.83
1714 2185 1.723608 CTTCTGGTGTGGCGCAAACA 61.724 55.000 10.83 10.79 0.00 2.83
1715 2186 1.008538 CTTCTGGTGTGGCGCAAAC 60.009 57.895 10.83 7.74 0.00 2.93
1716 2187 0.749818 TTCTTCTGGTGTGGCGCAAA 60.750 50.000 10.83 0.00 0.00 3.68
1717 2188 0.537143 ATTCTTCTGGTGTGGCGCAA 60.537 50.000 10.83 0.00 0.00 4.85
1718 2189 0.955428 GATTCTTCTGGTGTGGCGCA 60.955 55.000 10.83 0.00 0.00 6.09
1719 2190 0.955428 TGATTCTTCTGGTGTGGCGC 60.955 55.000 0.00 0.00 0.00 6.53
1720 2191 1.466167 CTTGATTCTTCTGGTGTGGCG 59.534 52.381 0.00 0.00 0.00 5.69
1721 2192 2.783135 TCTTGATTCTTCTGGTGTGGC 58.217 47.619 0.00 0.00 0.00 5.01
1722 2193 4.155462 CACATCTTGATTCTTCTGGTGTGG 59.845 45.833 0.00 0.00 35.98 4.17
1723 2194 4.758674 ACACATCTTGATTCTTCTGGTGTG 59.241 41.667 0.00 0.00 40.54 3.82
1724 2195 4.758674 CACACATCTTGATTCTTCTGGTGT 59.241 41.667 0.00 0.00 37.43 4.16
1725 2196 4.155462 CCACACATCTTGATTCTTCTGGTG 59.845 45.833 0.00 0.00 0.00 4.17
1726 2197 4.330250 CCACACATCTTGATTCTTCTGGT 58.670 43.478 0.00 0.00 0.00 4.00
1727 2198 3.128242 GCCACACATCTTGATTCTTCTGG 59.872 47.826 0.00 0.00 0.00 3.86
1728 2199 3.181513 CGCCACACATCTTGATTCTTCTG 60.182 47.826 0.00 0.00 0.00 3.02
1729 2200 3.005554 CGCCACACATCTTGATTCTTCT 58.994 45.455 0.00 0.00 0.00 2.85
1730 2201 2.476854 GCGCCACACATCTTGATTCTTC 60.477 50.000 0.00 0.00 0.00 2.87
1731 2202 1.470098 GCGCCACACATCTTGATTCTT 59.530 47.619 0.00 0.00 0.00 2.52
1732 2203 1.089920 GCGCCACACATCTTGATTCT 58.910 50.000 0.00 0.00 0.00 2.40
1733 2204 0.804364 TGCGCCACACATCTTGATTC 59.196 50.000 4.18 0.00 0.00 2.52
1734 2205 1.200716 CTTGCGCCACACATCTTGATT 59.799 47.619 4.18 0.00 0.00 2.57
1735 2206 0.806868 CTTGCGCCACACATCTTGAT 59.193 50.000 4.18 0.00 0.00 2.57
1736 2207 1.236616 CCTTGCGCCACACATCTTGA 61.237 55.000 4.18 0.00 0.00 3.02
1737 2208 1.210931 CCTTGCGCCACACATCTTG 59.789 57.895 4.18 0.00 0.00 3.02
1738 2209 1.973281 CCCTTGCGCCACACATCTT 60.973 57.895 4.18 0.00 0.00 2.40
1739 2210 2.360350 CCCTTGCGCCACACATCT 60.360 61.111 4.18 0.00 0.00 2.90
1740 2211 4.120331 GCCCTTGCGCCACACATC 62.120 66.667 4.18 0.00 0.00 3.06
1741 2212 4.972733 TGCCCTTGCGCCACACAT 62.973 61.111 4.18 0.00 41.78 3.21
1743 2214 3.846602 CTTTGCCCTTGCGCCACAC 62.847 63.158 4.18 0.00 41.78 3.82
1744 2215 3.604667 CTTTGCCCTTGCGCCACA 61.605 61.111 4.18 0.00 41.78 4.17
1745 2216 2.855514 TTCTTTGCCCTTGCGCCAC 61.856 57.895 4.18 0.00 41.78 5.01
1746 2217 2.520500 TTCTTTGCCCTTGCGCCA 60.521 55.556 4.18 0.00 41.78 5.69
1747 2218 2.049156 GTTCTTTGCCCTTGCGCC 60.049 61.111 4.18 0.00 41.78 6.53
1748 2219 1.081175 GAGTTCTTTGCCCTTGCGC 60.081 57.895 0.00 0.00 41.78 6.09
1749 2220 1.207593 CGAGTTCTTTGCCCTTGCG 59.792 57.895 0.00 0.00 41.78 4.85
1750 2221 1.131315 GATCGAGTTCTTTGCCCTTGC 59.869 52.381 0.00 0.00 38.26 4.01
1751 2222 2.426522 TGATCGAGTTCTTTGCCCTTG 58.573 47.619 0.00 0.00 0.00 3.61
1752 2223 2.859165 TGATCGAGTTCTTTGCCCTT 57.141 45.000 0.00 0.00 0.00 3.95
1753 2224 2.237143 TGATGATCGAGTTCTTTGCCCT 59.763 45.455 0.00 0.00 0.00 5.19
1754 2225 2.611292 CTGATGATCGAGTTCTTTGCCC 59.389 50.000 0.00 0.00 0.00 5.36
1755 2226 3.265791 ACTGATGATCGAGTTCTTTGCC 58.734 45.455 0.00 0.00 0.00 4.52
1756 2227 3.928992 TGACTGATGATCGAGTTCTTTGC 59.071 43.478 0.00 0.00 0.00 3.68
1757 2228 5.809051 TGATGACTGATGATCGAGTTCTTTG 59.191 40.000 0.00 0.00 0.00 2.77
1758 2229 5.809562 GTGATGACTGATGATCGAGTTCTTT 59.190 40.000 0.00 0.00 0.00 2.52
1759 2230 5.105595 TGTGATGACTGATGATCGAGTTCTT 60.106 40.000 0.00 0.00 0.00 2.52
1760 2231 4.400567 TGTGATGACTGATGATCGAGTTCT 59.599 41.667 0.00 0.00 0.00 3.01
1761 2232 4.676546 TGTGATGACTGATGATCGAGTTC 58.323 43.478 0.00 0.00 0.00 3.01
1762 2233 4.725790 TGTGATGACTGATGATCGAGTT 57.274 40.909 0.00 0.00 0.00 3.01
1763 2234 4.261952 GGATGTGATGACTGATGATCGAGT 60.262 45.833 0.00 0.00 0.00 4.18
1764 2235 4.236147 GGATGTGATGACTGATGATCGAG 58.764 47.826 0.00 0.00 0.00 4.04
1765 2236 3.638160 TGGATGTGATGACTGATGATCGA 59.362 43.478 0.00 0.00 0.00 3.59
1766 2237 3.739810 GTGGATGTGATGACTGATGATCG 59.260 47.826 0.00 0.00 0.00 3.69
1767 2238 3.739810 CGTGGATGTGATGACTGATGATC 59.260 47.826 0.00 0.00 0.00 2.92
1768 2239 3.725490 CGTGGATGTGATGACTGATGAT 58.275 45.455 0.00 0.00 0.00 2.45
1769 2240 2.739609 GCGTGGATGTGATGACTGATGA 60.740 50.000 0.00 0.00 0.00 2.92
1770 2241 1.596260 GCGTGGATGTGATGACTGATG 59.404 52.381 0.00 0.00 0.00 3.07
1771 2242 1.803998 CGCGTGGATGTGATGACTGAT 60.804 52.381 0.00 0.00 0.00 2.90
1772 2243 0.458370 CGCGTGGATGTGATGACTGA 60.458 55.000 0.00 0.00 0.00 3.41
1773 2244 2.001357 CGCGTGGATGTGATGACTG 58.999 57.895 0.00 0.00 0.00 3.51
1774 2245 1.811266 GCGCGTGGATGTGATGACT 60.811 57.895 8.43 0.00 0.00 3.41
1775 2246 2.703409 GCGCGTGGATGTGATGAC 59.297 61.111 8.43 0.00 0.00 3.06
1776 2247 2.511373 GGCGCGTGGATGTGATGA 60.511 61.111 8.43 0.00 0.00 2.92
1777 2248 2.397754 TTGGCGCGTGGATGTGATG 61.398 57.895 8.43 0.00 0.00 3.07
1778 2249 2.046411 TTGGCGCGTGGATGTGAT 60.046 55.556 8.43 0.00 0.00 3.06
1779 2250 3.047280 GTTGGCGCGTGGATGTGA 61.047 61.111 8.43 0.00 0.00 3.58
1780 2251 2.902419 TTGTTGGCGCGTGGATGTG 61.902 57.895 8.43 0.00 0.00 3.21
1781 2252 2.593148 TTGTTGGCGCGTGGATGT 60.593 55.556 8.43 0.00 0.00 3.06
1782 2253 2.126888 GTTGTTGGCGCGTGGATG 60.127 61.111 8.43 0.00 0.00 3.51
1783 2254 2.593148 TGTTGTTGGCGCGTGGAT 60.593 55.556 8.43 0.00 0.00 3.41
1784 2255 3.276091 CTGTTGTTGGCGCGTGGA 61.276 61.111 8.43 0.00 0.00 4.02
1785 2256 4.326766 CCTGTTGTTGGCGCGTGG 62.327 66.667 8.43 0.00 0.00 4.94
1786 2257 4.326766 CCCTGTTGTTGGCGCGTG 62.327 66.667 8.43 0.00 0.00 5.34
1787 2258 4.555709 TCCCTGTTGTTGGCGCGT 62.556 61.111 8.43 0.00 0.00 6.01
1788 2259 4.025401 GTCCCTGTTGTTGGCGCG 62.025 66.667 0.00 0.00 0.00 6.86
1789 2260 2.594592 AGTCCCTGTTGTTGGCGC 60.595 61.111 0.00 0.00 0.00 6.53
1790 2261 2.317609 CGAGTCCCTGTTGTTGGCG 61.318 63.158 0.00 0.00 0.00 5.69
1791 2262 1.227853 ACGAGTCCCTGTTGTTGGC 60.228 57.895 0.00 0.00 0.00 4.52
1792 2263 0.602905 GGACGAGTCCCTGTTGTTGG 60.603 60.000 11.07 0.00 43.94 3.77
1793 2264 2.914379 GGACGAGTCCCTGTTGTTG 58.086 57.895 11.07 0.00 43.94 3.33
1803 2274 5.107414 GCTCTTACTTTTCTTTGGACGAGTC 60.107 44.000 0.00 0.00 0.00 3.36
1804 2275 4.750598 GCTCTTACTTTTCTTTGGACGAGT 59.249 41.667 0.00 0.00 0.00 4.18
1805 2276 4.750098 TGCTCTTACTTTTCTTTGGACGAG 59.250 41.667 0.00 0.00 0.00 4.18
1806 2277 4.699637 TGCTCTTACTTTTCTTTGGACGA 58.300 39.130 0.00 0.00 0.00 4.20
1807 2278 5.409826 AGATGCTCTTACTTTTCTTTGGACG 59.590 40.000 0.00 0.00 0.00 4.79
1808 2279 6.128145 GGAGATGCTCTTACTTTTCTTTGGAC 60.128 42.308 0.00 0.00 0.00 4.02
1809 2280 5.940470 GGAGATGCTCTTACTTTTCTTTGGA 59.060 40.000 0.00 0.00 0.00 3.53
1810 2281 5.707298 TGGAGATGCTCTTACTTTTCTTTGG 59.293 40.000 0.00 0.00 0.00 3.28
1811 2282 6.622462 GCTGGAGATGCTCTTACTTTTCTTTG 60.622 42.308 0.00 0.00 0.00 2.77
1812 2283 5.414144 GCTGGAGATGCTCTTACTTTTCTTT 59.586 40.000 0.00 0.00 0.00 2.52
1813 2284 4.940654 GCTGGAGATGCTCTTACTTTTCTT 59.059 41.667 0.00 0.00 0.00 2.52
1817 2288 2.419297 CGGCTGGAGATGCTCTTACTTT 60.419 50.000 0.00 0.00 0.00 2.66
1995 2468 1.282875 GCCCTTTCGCTTGTGACAC 59.717 57.895 0.00 0.00 0.00 3.67
1996 2469 2.250939 CGCCCTTTCGCTTGTGACA 61.251 57.895 0.00 0.00 0.00 3.58
2076 2554 1.925959 AGGAGAAAATGGGAGGGAAGG 59.074 52.381 0.00 0.00 0.00 3.46
2101 2579 3.090532 GGAGGGAGATTGGCGGGT 61.091 66.667 0.00 0.00 0.00 5.28
2309 2787 4.778143 GCGATGGCCCTGTTCCGT 62.778 66.667 0.00 0.00 0.00 4.69



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.