Multiple sequence alignment - TraesCS3D01G261900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G261900 chr3D 100.000 2921 0 0 1 2921 363604910 363601990 0.000000e+00 5395.0
1 TraesCS3D01G261900 chr3D 88.438 320 15 5 2483 2780 363857686 363858005 1.650000e-97 366.0
2 TraesCS3D01G261900 chr3D 89.513 267 22 3 1 261 363863805 363864071 1.680000e-87 333.0
3 TraesCS3D01G261900 chr3D 93.651 189 12 0 1 189 363856273 363856461 1.710000e-72 283.0
4 TraesCS3D01G261900 chr3D 97.484 159 4 0 396 554 570493338 570493496 3.710000e-69 272.0
5 TraesCS3D01G261900 chr3D 92.958 142 6 2 2784 2921 363858058 363858199 1.370000e-48 204.0
6 TraesCS3D01G261900 chr3D 88.095 168 10 2 614 771 363857138 363857305 1.070000e-44 191.0
7 TraesCS3D01G261900 chr3D 88.235 85 10 0 2081 2165 611941445 611941529 5.150000e-18 102.0
8 TraesCS3D01G261900 chr3D 87.356 87 10 1 2080 2165 611967162 611967248 6.660000e-17 99.0
9 TraesCS3D01G261900 chr3D 87.356 87 10 1 2080 2165 611990172 611990258 6.660000e-17 99.0
10 TraesCS3D01G261900 chr3D 86.207 87 11 1 2080 2165 611980545 611980631 3.100000e-15 93.5
11 TraesCS3D01G261900 chr3D 100.000 34 0 0 2047 2080 556951378 556951411 2.430000e-06 63.9
12 TraesCS3D01G261900 chr3D 97.222 36 1 0 2046 2081 105090681 105090716 8.740000e-06 62.1
13 TraesCS3D01G261900 chr3D 94.444 36 2 0 2045 2080 363324935 363324900 4.070000e-04 56.5
14 TraesCS3D01G261900 chr3A 92.778 1260 73 11 555 1798 484651502 484650245 0.000000e+00 1807.0
15 TraesCS3D01G261900 chr3A 81.323 862 137 13 989 1832 484999237 485000092 0.000000e+00 678.0
16 TraesCS3D01G261900 chr3A 83.626 513 42 22 2446 2920 484644885 484644377 7.430000e-121 444.0
17 TraesCS3D01G261900 chr3A 95.489 266 12 0 5 270 484652863 484652598 2.690000e-115 425.0
18 TraesCS3D01G261900 chr3A 93.396 212 13 1 1794 2004 484645287 484645076 2.190000e-81 313.0
19 TraesCS3D01G261900 chr3A 88.060 268 24 5 1 261 485006852 485007118 7.860000e-81 311.0
20 TraesCS3D01G261900 chr3A 92.045 88 6 1 2080 2166 590228719 590228806 3.950000e-24 122.0
21 TraesCS3D01G261900 chr3B 81.640 866 133 13 989 1832 474016969 474017830 0.000000e+00 695.0
22 TraesCS3D01G261900 chr3B 92.025 326 15 8 1 326 473707503 473707189 5.740000e-122 448.0
23 TraesCS3D01G261900 chr3B 87.179 273 23 6 1 261 474023728 474024000 1.700000e-77 300.0
24 TraesCS3D01G261900 chr3B 81.495 281 22 11 2670 2921 473703644 473703365 1.370000e-48 204.0
25 TraesCS3D01G261900 chr3B 95.385 65 3 0 555 619 473707166 473707102 1.430000e-18 104.0
26 TraesCS3D01G261900 chr2D 96.875 160 4 1 399 558 181487125 181486967 1.730000e-67 267.0
27 TraesCS3D01G261900 chr2D 97.436 156 4 0 399 554 608443669 608443824 1.730000e-67 267.0
28 TraesCS3D01G261900 chr2D 96.795 156 5 0 399 554 635073283 635073438 8.030000e-66 261.0
29 TraesCS3D01G261900 chr2D 96.250 80 2 1 432 511 592141281 592141359 2.360000e-26 130.0
30 TraesCS3D01G261900 chr5D 95.570 158 6 1 397 554 59832745 59832901 4.830000e-63 252.0
31 TraesCS3D01G261900 chr5D 79.592 196 32 7 2570 2761 560062419 560062228 1.830000e-27 134.0
32 TraesCS3D01G261900 chr5D 95.122 41 1 1 2047 2087 76023165 76023126 2.430000e-06 63.9
33 TraesCS3D01G261900 chr1A 86.538 104 13 1 2083 2185 517422723 517422620 2.380000e-21 113.0
34 TraesCS3D01G261900 chr7A 86.316 95 13 0 2080 2174 427577204 427577110 1.430000e-18 104.0
35 TraesCS3D01G261900 chr7A 97.222 36 1 0 2047 2082 117238080 117238115 8.740000e-06 62.1
36 TraesCS3D01G261900 chr7D 89.333 75 8 0 2080 2154 591258668 591258742 8.620000e-16 95.3
37 TraesCS3D01G261900 chr7D 100.000 37 0 0 2044 2080 258228988 258228952 5.220000e-08 69.4
38 TraesCS3D01G261900 chr4B 97.222 36 1 0 2047 2082 139759902 139759867 8.740000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G261900 chr3D 363601990 363604910 2920 True 5395.0 5395 100.0000 1 2921 1 chr3D.!!$R2 2920
1 TraesCS3D01G261900 chr3D 363856273 363858199 1926 False 261.0 366 90.7855 1 2921 4 chr3D.!!$F9 2920
2 TraesCS3D01G261900 chr3A 484650245 484652863 2618 True 1116.0 1807 94.1335 5 1798 2 chr3A.!!$R2 1793
3 TraesCS3D01G261900 chr3A 484999237 485000092 855 False 678.0 678 81.3230 989 1832 1 chr3A.!!$F1 843
4 TraesCS3D01G261900 chr3A 484644377 484645287 910 True 378.5 444 88.5110 1794 2920 2 chr3A.!!$R1 1126
5 TraesCS3D01G261900 chr3B 474016969 474017830 861 False 695.0 695 81.6400 989 1832 1 chr3B.!!$F1 843
6 TraesCS3D01G261900 chr3B 473703365 473707503 4138 True 252.0 448 89.6350 1 2921 3 chr3B.!!$R1 2920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 1444 0.032952 GCCTGTCCAACACTGTACGA 59.967 55.0 0.0 0.0 0.0 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 5398 0.10409 ACCCCCTTAGTCCCAAGTGT 60.104 55.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
261 265 3.708121 TGCAGTGAGATATCTGACACCAT 59.292 43.478 22.13 0.92 32.32 3.55
263 476 4.202192 GCAGTGAGATATCTGACACCATCA 60.202 45.833 22.13 4.27 32.32 3.07
265 478 4.958581 AGTGAGATATCTGACACCATCACA 59.041 41.667 22.13 2.65 38.57 3.58
267 480 4.100035 TGAGATATCTGACACCATCACACC 59.900 45.833 10.74 0.00 32.37 4.16
269 482 2.479566 ATCTGACACCATCACACCAC 57.520 50.000 0.00 0.00 32.37 4.16
273 486 2.281414 CACCATCACACCACCGCA 60.281 61.111 0.00 0.00 0.00 5.69
275 488 3.055719 CCATCACACCACCGCACC 61.056 66.667 0.00 0.00 0.00 5.01
344 1345 4.091549 TCTGTAAGTACCGTGGAATCCTT 58.908 43.478 0.00 0.00 33.76 3.36
389 1390 4.248058 CGGTAACTAAAAATCCGGACACT 58.752 43.478 6.12 0.00 37.92 3.55
390 1391 4.328169 CGGTAACTAAAAATCCGGACACTC 59.672 45.833 6.12 0.00 37.92 3.51
391 1392 5.485620 GGTAACTAAAAATCCGGACACTCT 58.514 41.667 6.12 0.00 0.00 3.24
392 1393 5.350640 GGTAACTAAAAATCCGGACACTCTG 59.649 44.000 6.12 0.00 0.00 3.35
393 1394 3.939066 ACTAAAAATCCGGACACTCTGG 58.061 45.455 6.12 0.00 44.41 3.86
394 1395 1.534729 AAAAATCCGGACACTCTGGC 58.465 50.000 6.12 0.00 42.73 4.85
395 1396 0.693049 AAAATCCGGACACTCTGGCT 59.307 50.000 6.12 0.00 42.73 4.75
396 1397 1.568504 AAATCCGGACACTCTGGCTA 58.431 50.000 6.12 0.00 42.73 3.93
397 1398 1.568504 AATCCGGACACTCTGGCTAA 58.431 50.000 6.12 0.00 42.73 3.09
398 1399 0.824759 ATCCGGACACTCTGGCTAAC 59.175 55.000 6.12 0.00 42.73 2.34
399 1400 1.153823 CCGGACACTCTGGCTAACG 60.154 63.158 0.00 0.00 35.89 3.18
400 1401 1.592400 CCGGACACTCTGGCTAACGA 61.592 60.000 0.00 0.00 35.89 3.85
401 1402 0.456312 CGGACACTCTGGCTAACGAC 60.456 60.000 0.00 0.00 0.00 4.34
402 1403 0.108756 GGACACTCTGGCTAACGACC 60.109 60.000 0.00 0.00 0.00 4.79
403 1404 0.889306 GACACTCTGGCTAACGACCT 59.111 55.000 0.00 0.00 0.00 3.85
404 1405 1.272769 GACACTCTGGCTAACGACCTT 59.727 52.381 0.00 0.00 0.00 3.50
405 1406 1.000955 ACACTCTGGCTAACGACCTTG 59.999 52.381 0.00 0.00 0.00 3.61
406 1407 0.037232 ACTCTGGCTAACGACCTTGC 60.037 55.000 0.00 0.00 0.00 4.01
407 1408 0.247736 CTCTGGCTAACGACCTTGCT 59.752 55.000 0.00 0.00 0.00 3.91
408 1409 1.476891 CTCTGGCTAACGACCTTGCTA 59.523 52.381 0.00 0.00 0.00 3.49
409 1410 2.101582 CTCTGGCTAACGACCTTGCTAT 59.898 50.000 0.00 0.00 0.00 2.97
410 1411 3.293337 TCTGGCTAACGACCTTGCTATA 58.707 45.455 0.00 0.00 0.00 1.31
411 1412 3.067742 TCTGGCTAACGACCTTGCTATAC 59.932 47.826 0.00 0.00 0.00 1.47
412 1413 2.223641 TGGCTAACGACCTTGCTATACG 60.224 50.000 0.00 0.00 0.00 3.06
413 1414 2.223665 GGCTAACGACCTTGCTATACGT 60.224 50.000 0.00 0.00 38.81 3.57
414 1415 3.003689 GGCTAACGACCTTGCTATACGTA 59.996 47.826 0.00 0.00 36.20 3.57
415 1416 3.971240 GCTAACGACCTTGCTATACGTAC 59.029 47.826 0.00 0.00 36.20 3.67
416 1417 2.744787 ACGACCTTGCTATACGTACG 57.255 50.000 15.01 15.01 35.49 3.67
417 1418 2.279741 ACGACCTTGCTATACGTACGA 58.720 47.619 24.41 6.04 35.49 3.43
418 1419 2.030946 ACGACCTTGCTATACGTACGAC 59.969 50.000 24.41 6.19 35.49 4.34
419 1420 2.030823 CGACCTTGCTATACGTACGACA 59.969 50.000 24.41 9.64 0.00 4.35
420 1421 3.615614 GACCTTGCTATACGTACGACAG 58.384 50.000 24.41 15.60 0.00 3.51
421 1422 3.273434 ACCTTGCTATACGTACGACAGA 58.727 45.455 24.41 5.53 0.00 3.41
422 1423 3.064545 ACCTTGCTATACGTACGACAGAC 59.935 47.826 24.41 8.74 0.00 3.51
423 1424 3.311871 CCTTGCTATACGTACGACAGACT 59.688 47.826 24.41 0.00 0.00 3.24
424 1425 3.938778 TGCTATACGTACGACAGACTG 57.061 47.619 24.41 0.00 0.00 3.51
425 1426 2.031314 TGCTATACGTACGACAGACTGC 59.969 50.000 24.41 15.49 0.00 4.40
426 1427 2.601741 GCTATACGTACGACAGACTGCC 60.602 54.545 24.41 0.00 0.00 4.85
427 1428 1.747709 ATACGTACGACAGACTGCCT 58.252 50.000 24.41 0.00 0.00 4.75
436 1437 2.621763 CAGACTGCCTGTCCAACAC 58.378 57.895 0.00 0.00 46.46 3.32
437 1438 0.107456 CAGACTGCCTGTCCAACACT 59.893 55.000 0.00 0.00 46.46 3.55
438 1439 0.107456 AGACTGCCTGTCCAACACTG 59.893 55.000 0.00 0.00 46.46 3.66
439 1440 0.179045 GACTGCCTGTCCAACACTGT 60.179 55.000 0.00 0.00 39.69 3.55
440 1441 1.070134 GACTGCCTGTCCAACACTGTA 59.930 52.381 0.00 0.00 39.69 2.74
441 1442 1.202651 ACTGCCTGTCCAACACTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
442 1443 0.249699 TGCCTGTCCAACACTGTACG 60.250 55.000 0.00 0.00 0.00 3.67
443 1444 0.032952 GCCTGTCCAACACTGTACGA 59.967 55.000 0.00 0.00 0.00 3.43
444 1445 1.337823 GCCTGTCCAACACTGTACGAT 60.338 52.381 0.00 0.00 0.00 3.73
445 1446 2.870435 GCCTGTCCAACACTGTACGATT 60.870 50.000 0.00 0.00 0.00 3.34
446 1447 3.615592 GCCTGTCCAACACTGTACGATTA 60.616 47.826 0.00 0.00 0.00 1.75
447 1448 4.174009 CCTGTCCAACACTGTACGATTAG 58.826 47.826 0.00 0.00 0.00 1.73
448 1449 4.082408 CCTGTCCAACACTGTACGATTAGA 60.082 45.833 0.00 0.00 0.00 2.10
449 1450 5.055642 TGTCCAACACTGTACGATTAGAG 57.944 43.478 0.00 0.00 0.00 2.43
450 1451 3.858238 GTCCAACACTGTACGATTAGAGC 59.142 47.826 0.00 0.00 0.00 4.09
451 1452 3.119245 TCCAACACTGTACGATTAGAGCC 60.119 47.826 0.00 0.00 0.00 4.70
452 1453 3.368013 CCAACACTGTACGATTAGAGCCA 60.368 47.826 0.00 0.00 0.00 4.75
453 1454 4.242475 CAACACTGTACGATTAGAGCCAA 58.758 43.478 0.00 0.00 0.00 4.52
454 1455 4.530710 ACACTGTACGATTAGAGCCAAA 57.469 40.909 0.00 0.00 0.00 3.28
455 1456 5.086104 ACACTGTACGATTAGAGCCAAAT 57.914 39.130 0.00 0.00 0.00 2.32
456 1457 5.109903 ACACTGTACGATTAGAGCCAAATC 58.890 41.667 0.00 0.00 0.00 2.17
457 1458 5.109210 CACTGTACGATTAGAGCCAAATCA 58.891 41.667 0.00 0.00 33.75 2.57
458 1459 5.755375 CACTGTACGATTAGAGCCAAATCAT 59.245 40.000 0.00 0.00 33.75 2.45
459 1460 6.923508 CACTGTACGATTAGAGCCAAATCATA 59.076 38.462 0.00 0.00 33.75 2.15
460 1461 6.924060 ACTGTACGATTAGAGCCAAATCATAC 59.076 38.462 0.00 3.77 34.32 2.39
461 1462 6.811954 TGTACGATTAGAGCCAAATCATACA 58.188 36.000 7.64 7.64 38.79 2.29
462 1463 7.441836 TGTACGATTAGAGCCAAATCATACAT 58.558 34.615 7.64 0.00 37.20 2.29
463 1464 8.581578 TGTACGATTAGAGCCAAATCATACATA 58.418 33.333 7.64 0.00 37.20 2.29
464 1465 9.419297 GTACGATTAGAGCCAAATCATACATAA 57.581 33.333 0.00 0.00 34.05 1.90
466 1467 9.507329 ACGATTAGAGCCAAATCATACATAATT 57.493 29.630 0.00 0.00 33.75 1.40
467 1468 9.979270 CGATTAGAGCCAAATCATACATAATTC 57.021 33.333 4.69 0.00 33.75 2.17
470 1471 9.851686 TTAGAGCCAAATCATACATAATTCAGT 57.148 29.630 0.00 0.00 0.00 3.41
471 1472 8.757982 AGAGCCAAATCATACATAATTCAGTT 57.242 30.769 0.00 0.00 0.00 3.16
472 1473 9.193806 AGAGCCAAATCATACATAATTCAGTTT 57.806 29.630 0.00 0.00 0.00 2.66
473 1474 9.241317 GAGCCAAATCATACATAATTCAGTTTG 57.759 33.333 0.00 0.00 0.00 2.93
474 1475 8.752187 AGCCAAATCATACATAATTCAGTTTGT 58.248 29.630 0.00 0.00 0.00 2.83
475 1476 8.810427 GCCAAATCATACATAATTCAGTTTGTG 58.190 33.333 0.00 0.00 0.00 3.33
476 1477 9.304731 CCAAATCATACATAATTCAGTTTGTGG 57.695 33.333 0.00 0.00 0.00 4.17
477 1478 9.304731 CAAATCATACATAATTCAGTTTGTGGG 57.695 33.333 0.00 0.00 0.00 4.61
478 1479 6.449635 TCATACATAATTCAGTTTGTGGGC 57.550 37.500 0.00 0.00 0.00 5.36
479 1480 5.359576 TCATACATAATTCAGTTTGTGGGCC 59.640 40.000 0.00 0.00 0.00 5.80
480 1481 3.505386 ACATAATTCAGTTTGTGGGCCA 58.495 40.909 0.00 0.00 0.00 5.36
481 1482 4.095946 ACATAATTCAGTTTGTGGGCCAT 58.904 39.130 10.70 0.00 0.00 4.40
482 1483 5.268387 ACATAATTCAGTTTGTGGGCCATA 58.732 37.500 10.70 3.21 0.00 2.74
483 1484 5.360714 ACATAATTCAGTTTGTGGGCCATAG 59.639 40.000 10.70 0.00 0.00 2.23
484 1485 2.969821 TTCAGTTTGTGGGCCATAGT 57.030 45.000 10.70 0.00 0.00 2.12
485 1486 4.584638 ATTCAGTTTGTGGGCCATAGTA 57.415 40.909 10.70 0.00 0.00 1.82
486 1487 3.627395 TCAGTTTGTGGGCCATAGTAG 57.373 47.619 10.70 0.00 0.00 2.57
487 1488 2.910319 TCAGTTTGTGGGCCATAGTAGT 59.090 45.455 10.70 0.00 0.00 2.73
488 1489 3.329520 TCAGTTTGTGGGCCATAGTAGTT 59.670 43.478 10.70 0.00 0.00 2.24
489 1490 4.532916 TCAGTTTGTGGGCCATAGTAGTTA 59.467 41.667 10.70 0.00 0.00 2.24
490 1491 4.876107 CAGTTTGTGGGCCATAGTAGTTAG 59.124 45.833 10.70 0.00 0.00 2.34
491 1492 4.781087 AGTTTGTGGGCCATAGTAGTTAGA 59.219 41.667 10.70 0.00 0.00 2.10
492 1493 5.104900 AGTTTGTGGGCCATAGTAGTTAGAG 60.105 44.000 10.70 0.00 0.00 2.43
493 1494 4.259933 TGTGGGCCATAGTAGTTAGAGA 57.740 45.455 10.70 0.00 0.00 3.10
494 1495 4.816126 TGTGGGCCATAGTAGTTAGAGAT 58.184 43.478 10.70 0.00 0.00 2.75
495 1496 4.588951 TGTGGGCCATAGTAGTTAGAGATG 59.411 45.833 10.70 0.00 0.00 2.90
496 1497 3.578716 TGGGCCATAGTAGTTAGAGATGC 59.421 47.826 0.00 0.00 0.00 3.91
497 1498 3.367498 GGGCCATAGTAGTTAGAGATGCG 60.367 52.174 4.39 0.00 0.00 4.73
498 1499 3.256136 GGCCATAGTAGTTAGAGATGCGT 59.744 47.826 0.00 0.00 0.00 5.24
499 1500 4.262079 GGCCATAGTAGTTAGAGATGCGTT 60.262 45.833 0.00 0.00 0.00 4.84
500 1501 4.681942 GCCATAGTAGTTAGAGATGCGTTG 59.318 45.833 0.00 0.00 0.00 4.10
501 1502 4.681942 CCATAGTAGTTAGAGATGCGTTGC 59.318 45.833 0.00 0.00 0.00 4.17
502 1503 5.508153 CCATAGTAGTTAGAGATGCGTTGCT 60.508 44.000 0.00 0.00 0.00 3.91
503 1504 4.035278 AGTAGTTAGAGATGCGTTGCTC 57.965 45.455 0.00 0.00 0.00 4.26
504 1505 3.697045 AGTAGTTAGAGATGCGTTGCTCT 59.303 43.478 0.00 0.00 43.48 4.09
505 1506 3.157932 AGTTAGAGATGCGTTGCTCTC 57.842 47.619 0.60 9.01 41.46 3.20
507 1508 2.857152 GTTAGAGATGCGTTGCTCTCTG 59.143 50.000 20.83 0.00 45.93 3.35
508 1509 0.175302 AGAGATGCGTTGCTCTCTGG 59.825 55.000 15.24 0.00 45.01 3.86
509 1510 0.108424 GAGATGCGTTGCTCTCTGGT 60.108 55.000 9.50 0.00 35.95 4.00
510 1511 0.108424 AGATGCGTTGCTCTCTGGTC 60.108 55.000 0.00 0.00 0.00 4.02
511 1512 0.390340 GATGCGTTGCTCTCTGGTCA 60.390 55.000 0.00 0.00 0.00 4.02
512 1513 0.251354 ATGCGTTGCTCTCTGGTCAT 59.749 50.000 0.00 0.00 0.00 3.06
513 1514 0.894835 TGCGTTGCTCTCTGGTCATA 59.105 50.000 0.00 0.00 0.00 2.15
514 1515 1.281899 GCGTTGCTCTCTGGTCATAC 58.718 55.000 0.00 0.00 0.00 2.39
515 1516 1.404181 GCGTTGCTCTCTGGTCATACA 60.404 52.381 0.00 0.00 0.00 2.29
516 1517 2.534298 CGTTGCTCTCTGGTCATACAG 58.466 52.381 0.00 0.00 39.84 2.74
517 1518 2.736719 CGTTGCTCTCTGGTCATACAGG 60.737 54.545 0.00 0.00 38.98 4.00
518 1519 2.234908 GTTGCTCTCTGGTCATACAGGT 59.765 50.000 0.00 0.00 38.98 4.00
519 1520 2.103373 TGCTCTCTGGTCATACAGGTC 58.897 52.381 0.00 0.00 38.98 3.85
520 1521 1.066303 GCTCTCTGGTCATACAGGTCG 59.934 57.143 0.00 0.00 38.98 4.79
521 1522 1.678627 CTCTCTGGTCATACAGGTCGG 59.321 57.143 0.00 0.00 38.98 4.79
522 1523 1.283905 TCTCTGGTCATACAGGTCGGA 59.716 52.381 0.00 0.00 38.98 4.55
523 1524 2.091830 TCTCTGGTCATACAGGTCGGAT 60.092 50.000 0.00 0.00 38.98 4.18
524 1525 2.031870 TCTGGTCATACAGGTCGGATG 58.968 52.381 0.00 0.00 38.98 3.51
525 1526 1.069204 CTGGTCATACAGGTCGGATGG 59.931 57.143 0.00 0.00 34.84 3.51
526 1527 1.342574 TGGTCATACAGGTCGGATGGA 60.343 52.381 0.00 0.00 0.00 3.41
527 1528 1.760613 GGTCATACAGGTCGGATGGAA 59.239 52.381 0.00 0.00 0.00 3.53
528 1529 2.169769 GGTCATACAGGTCGGATGGAAA 59.830 50.000 0.00 0.00 0.00 3.13
529 1530 3.370103 GGTCATACAGGTCGGATGGAAAA 60.370 47.826 0.00 0.00 0.00 2.29
530 1531 4.258543 GTCATACAGGTCGGATGGAAAAA 58.741 43.478 0.00 0.00 0.00 1.94
531 1532 4.881850 GTCATACAGGTCGGATGGAAAAAT 59.118 41.667 0.00 0.00 0.00 1.82
532 1533 5.007724 GTCATACAGGTCGGATGGAAAAATC 59.992 44.000 0.00 0.00 0.00 2.17
533 1534 3.433306 ACAGGTCGGATGGAAAAATCA 57.567 42.857 0.00 0.00 0.00 2.57
534 1535 3.968265 ACAGGTCGGATGGAAAAATCAT 58.032 40.909 0.00 0.00 0.00 2.45
535 1536 3.947834 ACAGGTCGGATGGAAAAATCATC 59.052 43.478 0.00 0.00 40.02 2.92
536 1537 3.002656 CAGGTCGGATGGAAAAATCATCG 59.997 47.826 0.00 0.00 41.24 3.84
537 1538 2.943033 GGTCGGATGGAAAAATCATCGT 59.057 45.455 0.00 0.00 41.24 3.73
538 1539 4.124238 GGTCGGATGGAAAAATCATCGTA 58.876 43.478 0.00 0.00 41.24 3.43
539 1540 4.025145 GGTCGGATGGAAAAATCATCGTAC 60.025 45.833 0.00 0.00 41.24 3.67
540 1541 3.799963 TCGGATGGAAAAATCATCGTACG 59.200 43.478 9.53 9.53 41.24 3.67
541 1542 3.554324 CGGATGGAAAAATCATCGTACGT 59.446 43.478 16.05 0.00 41.24 3.57
542 1543 4.741185 CGGATGGAAAAATCATCGTACGTA 59.259 41.667 16.05 2.34 41.24 3.57
543 1544 5.107989 CGGATGGAAAAATCATCGTACGTAG 60.108 44.000 16.05 9.17 41.24 3.51
544 1545 5.981315 GGATGGAAAAATCATCGTACGTAGA 59.019 40.000 16.05 14.32 41.24 2.59
545 1546 6.144080 GGATGGAAAAATCATCGTACGTAGAG 59.856 42.308 16.05 4.06 41.24 2.43
546 1547 4.802039 TGGAAAAATCATCGTACGTAGAGC 59.198 41.667 16.05 3.77 0.00 4.09
547 1548 4.802039 GGAAAAATCATCGTACGTAGAGCA 59.198 41.667 16.05 0.00 0.00 4.26
548 1549 5.051641 GGAAAAATCATCGTACGTAGAGCAG 60.052 44.000 16.05 0.00 0.00 4.24
549 1550 4.634184 AAATCATCGTACGTAGAGCAGT 57.366 40.909 16.05 0.00 0.00 4.40
550 1551 4.634184 AATCATCGTACGTAGAGCAGTT 57.366 40.909 16.05 3.29 0.00 3.16
551 1552 4.634184 ATCATCGTACGTAGAGCAGTTT 57.366 40.909 16.05 0.00 0.00 2.66
552 1553 4.430137 TCATCGTACGTAGAGCAGTTTT 57.570 40.909 16.05 0.00 0.00 2.43
553 1554 4.163552 TCATCGTACGTAGAGCAGTTTTG 58.836 43.478 16.05 0.00 0.00 2.44
594 1595 5.669477 TGGCAATTTTGAACTAAAACAGCT 58.331 33.333 0.00 0.00 40.80 4.24
644 3676 6.252599 TGTCATAACTGAATCCATAGGCTT 57.747 37.500 0.00 0.00 31.85 4.35
729 3772 3.765894 CTGTGGTGGGCGTGTGGAA 62.766 63.158 0.00 0.00 0.00 3.53
747 3790 6.372659 GTGTGGAAGTGAATATGTGATGACTT 59.627 38.462 0.00 0.00 0.00 3.01
751 3794 7.716560 TGGAAGTGAATATGTGATGACTTATGG 59.283 37.037 0.00 0.00 0.00 2.74
760 3811 4.285775 TGTGATGACTTATGGTTGAGGTCA 59.714 41.667 0.00 0.00 40.43 4.02
922 3973 1.831736 GCCAGGTCTATATACGGCCAT 59.168 52.381 2.24 0.00 33.31 4.40
937 3988 3.632145 ACGGCCATATTCCTCAAAATCAC 59.368 43.478 2.24 0.00 0.00 3.06
1026 4092 0.473886 ACCTACCACACCAGCTCCTT 60.474 55.000 0.00 0.00 0.00 3.36
1033 4099 0.907230 ACACCAGCTCCTTCTCCTCC 60.907 60.000 0.00 0.00 0.00 4.30
1075 4141 4.418820 CCTCCCATGGCTCCCTTA 57.581 61.111 6.09 0.00 0.00 2.69
1076 4142 2.632831 CCTCCCATGGCTCCCTTAA 58.367 57.895 6.09 0.00 0.00 1.85
1082 4148 0.109342 CATGGCTCCCTTAATCCGCT 59.891 55.000 0.00 0.00 0.00 5.52
1128 4194 1.266718 TGCTTGGAATCGTTCAAGTGC 59.733 47.619 0.00 0.00 41.56 4.40
1133 4199 1.144969 GAATCGTTCAAGTGCGGTGA 58.855 50.000 0.00 0.00 0.00 4.02
1153 4219 5.447279 GGTGACGTTGACATCAAATATCCAC 60.447 44.000 0.00 1.74 37.63 4.02
1192 4258 0.391927 TCAAGCAACCCCCGATTACG 60.392 55.000 0.00 0.00 39.43 3.18
1253 4319 2.044946 CCAAGGCGAGGGGGAAAG 60.045 66.667 0.00 0.00 0.00 2.62
1254 4320 2.757077 CAAGGCGAGGGGGAAAGT 59.243 61.111 0.00 0.00 0.00 2.66
1316 4391 2.422479 TCCGGAACATCTTCTACGACAG 59.578 50.000 0.00 0.00 0.00 3.51
1319 4394 3.427243 GGAACATCTTCTACGACAGTCG 58.573 50.000 21.62 21.62 46.93 4.18
1332 4407 2.350522 GACAGTCGCACCATCATTCTT 58.649 47.619 0.00 0.00 0.00 2.52
1351 4429 1.303643 GGGGACACTGAAGCCCTTG 60.304 63.158 0.00 0.00 41.72 3.61
1396 4474 1.154672 CACAACGTGTCATTCGGCG 60.155 57.895 0.00 0.00 0.00 6.46
1477 4555 4.812476 CGGCAAGCGATCACCCGA 62.812 66.667 1.01 0.00 41.34 5.14
1485 4563 1.730487 CGATCACCCGACTCCTGAG 59.270 63.158 0.00 0.00 0.00 3.35
1566 4644 4.584743 GGAGATGGTGTTTCCTTCTTGTTT 59.415 41.667 4.28 0.00 46.44 2.83
1589 4667 3.576982 ACCTCTGAGGATGACAACGTTTA 59.423 43.478 29.71 0.00 37.67 2.01
1608 4686 2.121116 ATCGAGAGTACGAATTGGCG 57.879 50.000 0.00 0.00 45.16 5.69
1656 4734 5.569413 GTGCCGGTAAATAAAGATGTTCTG 58.431 41.667 1.90 0.00 0.00 3.02
1657 4735 5.353123 GTGCCGGTAAATAAAGATGTTCTGA 59.647 40.000 1.90 0.00 0.00 3.27
1739 4820 4.023450 CGAGTTGAAATGGCATATGAGCAT 60.023 41.667 6.97 0.00 35.83 3.79
1893 4983 3.797039 TGCCTATTCAAACTCTCCATCG 58.203 45.455 0.00 0.00 0.00 3.84
1907 4997 7.406031 ACTCTCCATCGAGTAAGTTATTCAA 57.594 36.000 6.26 0.00 42.19 2.69
1932 5023 9.869757 AAAACTGATCCTTAAATTTTATTCCCG 57.130 29.630 0.00 0.00 0.00 5.14
1937 5028 7.284489 TGATCCTTAAATTTTATTCCCGTCTGG 59.716 37.037 0.00 0.00 0.00 3.86
1951 5042 1.894756 TCTGGAAACAAACGGCCGG 60.895 57.895 31.76 14.78 42.06 6.13
1962 5053 3.385755 ACAAACGGCCGGTAGTATATCTT 59.614 43.478 31.76 7.36 0.00 2.40
1985 5076 3.559811 GCTTGCCAATTCCTTCCCATTTT 60.560 43.478 0.00 0.00 0.00 1.82
2038 5129 3.707611 AGTAAGGTGTGTGGTAGACAACA 59.292 43.478 0.00 0.00 35.91 3.33
2101 5193 8.870160 TTTTGTTGATGTATAAATGCATAGCC 57.130 30.769 0.00 0.00 33.17 3.93
2103 5195 6.067350 TGTTGATGTATAAATGCATAGCCCA 58.933 36.000 0.00 0.00 33.17 5.36
2104 5196 6.720748 TGTTGATGTATAAATGCATAGCCCAT 59.279 34.615 0.00 0.00 33.17 4.00
2108 5201 8.649591 TGATGTATAAATGCATAGCCCATTTTT 58.350 29.630 0.00 0.00 41.60 1.94
2129 5222 4.589216 TTCCATCAGTTTGAGCTTTTGG 57.411 40.909 0.00 0.00 0.00 3.28
2135 5228 3.130340 TCAGTTTGAGCTTTTGGGTGAAC 59.870 43.478 0.00 0.00 0.00 3.18
2138 5231 2.727123 TGAGCTTTTGGGTGAACTGA 57.273 45.000 0.00 0.00 0.00 3.41
2141 5234 2.291741 GAGCTTTTGGGTGAACTGACTG 59.708 50.000 0.00 0.00 0.00 3.51
2142 5235 2.092429 AGCTTTTGGGTGAACTGACTGA 60.092 45.455 0.00 0.00 0.00 3.41
2149 5242 0.164647 GTGAACTGACTGATGCGTGC 59.835 55.000 0.00 0.00 0.00 5.34
2167 5260 4.988540 GCGTGCAGTTCTATATGGTATCAA 59.011 41.667 0.00 0.00 0.00 2.57
2169 5262 6.018262 GCGTGCAGTTCTATATGGTATCAAAA 60.018 38.462 0.00 0.00 0.00 2.44
2171 5264 8.223769 CGTGCAGTTCTATATGGTATCAAAATC 58.776 37.037 0.00 0.00 0.00 2.17
2195 5288 5.078411 AGAAATCTTGAGATGCGTGTAGT 57.922 39.130 0.00 0.00 34.49 2.73
2196 5289 5.482908 AGAAATCTTGAGATGCGTGTAGTT 58.517 37.500 0.00 0.00 34.49 2.24
2197 5290 5.934625 AGAAATCTTGAGATGCGTGTAGTTT 59.065 36.000 0.00 0.00 34.49 2.66
2198 5291 6.428159 AGAAATCTTGAGATGCGTGTAGTTTT 59.572 34.615 0.00 0.00 34.49 2.43
2199 5292 7.602644 AGAAATCTTGAGATGCGTGTAGTTTTA 59.397 33.333 0.00 0.00 34.49 1.52
2200 5293 6.648725 ATCTTGAGATGCGTGTAGTTTTAC 57.351 37.500 0.00 0.00 32.68 2.01
2201 5294 4.619760 TCTTGAGATGCGTGTAGTTTTACG 59.380 41.667 0.00 0.00 42.79 3.18
2202 5295 3.904571 TGAGATGCGTGTAGTTTTACGT 58.095 40.909 0.00 0.00 41.98 3.57
2203 5296 3.671459 TGAGATGCGTGTAGTTTTACGTG 59.329 43.478 0.00 0.00 41.98 4.49
2204 5297 2.991190 AGATGCGTGTAGTTTTACGTGG 59.009 45.455 0.00 0.00 41.98 4.94
2205 5298 2.222007 TGCGTGTAGTTTTACGTGGT 57.778 45.000 0.00 0.00 41.98 4.16
2206 5299 3.361794 TGCGTGTAGTTTTACGTGGTA 57.638 42.857 0.00 0.00 41.98 3.25
2207 5300 3.911868 TGCGTGTAGTTTTACGTGGTAT 58.088 40.909 0.00 0.00 41.98 2.73
2208 5301 3.919804 TGCGTGTAGTTTTACGTGGTATC 59.080 43.478 0.00 0.00 41.98 2.24
2209 5302 3.001758 GCGTGTAGTTTTACGTGGTATCG 60.002 47.826 0.00 0.00 41.98 2.92
2210 5303 4.402583 CGTGTAGTTTTACGTGGTATCGA 58.597 43.478 0.00 0.00 35.70 3.59
2211 5304 4.851014 CGTGTAGTTTTACGTGGTATCGAA 59.149 41.667 0.00 0.00 35.70 3.71
2212 5305 5.341993 CGTGTAGTTTTACGTGGTATCGAAA 59.658 40.000 0.00 0.00 35.70 3.46
2213 5306 6.033831 CGTGTAGTTTTACGTGGTATCGAAAT 59.966 38.462 0.00 0.00 35.70 2.17
2214 5307 7.386414 GTGTAGTTTTACGTGGTATCGAAATC 58.614 38.462 0.00 0.00 32.21 2.17
2215 5308 7.062138 GTGTAGTTTTACGTGGTATCGAAATCA 59.938 37.037 0.00 0.00 32.21 2.57
2216 5309 7.598118 TGTAGTTTTACGTGGTATCGAAATCAA 59.402 33.333 0.00 0.00 32.21 2.57
2217 5310 7.057149 AGTTTTACGTGGTATCGAAATCAAG 57.943 36.000 0.00 0.00 34.70 3.02
2218 5311 6.869913 AGTTTTACGTGGTATCGAAATCAAGA 59.130 34.615 0.00 0.00 34.70 3.02
2219 5312 6.880822 TTTACGTGGTATCGAAATCAAGAG 57.119 37.500 0.00 0.00 34.70 2.85
2220 5313 4.713824 ACGTGGTATCGAAATCAAGAGA 57.286 40.909 0.00 0.00 34.70 3.10
2221 5314 5.263968 ACGTGGTATCGAAATCAAGAGAT 57.736 39.130 0.00 0.00 33.58 2.75
2222 5315 5.282510 ACGTGGTATCGAAATCAAGAGATC 58.717 41.667 0.00 0.00 32.54 2.75
2223 5316 5.067936 ACGTGGTATCGAAATCAAGAGATCT 59.932 40.000 0.00 0.00 32.54 2.75
2224 5317 5.980116 CGTGGTATCGAAATCAAGAGATCTT 59.020 40.000 0.00 0.00 36.45 2.40
2225 5318 8.366930 ACGTGGTATCGAAATCAAGAGATCTTG 61.367 40.741 15.05 15.05 42.64 3.02
2243 5336 2.260844 TGAGTTCAAGACTTGGCTGG 57.739 50.000 15.13 0.00 39.19 4.85
2246 5339 1.133668 AGTTCAAGACTTGGCTGGCTT 60.134 47.619 15.13 0.00 33.92 4.35
2247 5340 1.683385 GTTCAAGACTTGGCTGGCTTT 59.317 47.619 15.13 0.00 0.00 3.51
2257 5350 7.099120 AGACTTGGCTGGCTTTAATTAAATTG 58.901 34.615 10.97 2.40 0.00 2.32
2260 5353 5.177326 TGGCTGGCTTTAATTAAATTGCAG 58.823 37.500 18.50 15.04 0.00 4.41
2261 5354 4.034394 GGCTGGCTTTAATTAAATTGCAGC 59.966 41.667 21.82 21.82 0.00 5.25
2264 5357 6.035368 TGGCTTTAATTAAATTGCAGCTCA 57.965 33.333 18.50 12.08 32.34 4.26
2265 5358 6.642430 TGGCTTTAATTAAATTGCAGCTCAT 58.358 32.000 18.50 0.00 32.34 2.90
2266 5359 7.104939 TGGCTTTAATTAAATTGCAGCTCATT 58.895 30.769 18.50 0.00 32.34 2.57
2269 5362 9.830294 GCTTTAATTAAATTGCAGCTCATTTTT 57.170 25.926 10.97 2.32 32.44 1.94
2290 5383 7.732222 TTTTTATCCATGTTTAGGCCTGATT 57.268 32.000 17.99 0.00 0.00 2.57
2291 5384 8.830915 TTTTTATCCATGTTTAGGCCTGATTA 57.169 30.769 17.99 0.00 0.00 1.75
2292 5385 8.463930 TTTTATCCATGTTTAGGCCTGATTAG 57.536 34.615 17.99 0.30 0.00 1.73
2294 5387 3.785887 TCCATGTTTAGGCCTGATTAGGT 59.214 43.478 17.99 0.00 46.41 3.08
2295 5388 3.885297 CCATGTTTAGGCCTGATTAGGTG 59.115 47.826 17.99 5.50 46.41 4.00
2296 5389 4.385199 CCATGTTTAGGCCTGATTAGGTGA 60.385 45.833 17.99 0.00 46.41 4.02
2297 5390 4.919774 TGTTTAGGCCTGATTAGGTGAA 57.080 40.909 17.99 0.00 46.41 3.18
2298 5391 4.585879 TGTTTAGGCCTGATTAGGTGAAC 58.414 43.478 17.99 0.00 46.41 3.18
2299 5392 4.288626 TGTTTAGGCCTGATTAGGTGAACT 59.711 41.667 17.99 2.04 46.41 3.01
2300 5393 5.222048 TGTTTAGGCCTGATTAGGTGAACTT 60.222 40.000 17.99 0.00 46.41 2.66
2301 5394 5.514500 TTAGGCCTGATTAGGTGAACTTT 57.486 39.130 17.99 0.00 46.41 2.66
2302 5395 4.388577 AGGCCTGATTAGGTGAACTTTT 57.611 40.909 3.11 0.00 46.41 2.27
2303 5396 4.740902 AGGCCTGATTAGGTGAACTTTTT 58.259 39.130 3.11 0.00 46.41 1.94
2304 5397 4.524328 AGGCCTGATTAGGTGAACTTTTTG 59.476 41.667 3.11 0.00 46.41 2.44
2305 5398 4.522789 GGCCTGATTAGGTGAACTTTTTGA 59.477 41.667 5.29 0.00 46.41 2.69
2306 5399 5.461526 GCCTGATTAGGTGAACTTTTTGAC 58.538 41.667 5.29 0.00 46.41 3.18
2307 5400 5.009610 GCCTGATTAGGTGAACTTTTTGACA 59.990 40.000 5.29 0.00 46.41 3.58
2308 5401 6.438763 CCTGATTAGGTGAACTTTTTGACAC 58.561 40.000 0.00 0.00 39.39 3.67
2309 5402 6.263168 CCTGATTAGGTGAACTTTTTGACACT 59.737 38.462 0.00 0.00 39.39 3.55
2310 5403 7.201821 CCTGATTAGGTGAACTTTTTGACACTT 60.202 37.037 0.00 0.00 39.39 3.16
2311 5404 7.479980 TGATTAGGTGAACTTTTTGACACTTG 58.520 34.615 0.00 0.00 34.28 3.16
2312 5405 4.718940 AGGTGAACTTTTTGACACTTGG 57.281 40.909 0.00 0.00 34.28 3.61
2313 5406 3.447229 AGGTGAACTTTTTGACACTTGGG 59.553 43.478 0.00 0.00 34.28 4.12
2314 5407 3.445805 GGTGAACTTTTTGACACTTGGGA 59.554 43.478 0.00 0.00 34.28 4.37
2315 5408 4.421058 GTGAACTTTTTGACACTTGGGAC 58.579 43.478 0.00 0.00 0.00 4.46
2316 5409 4.157840 GTGAACTTTTTGACACTTGGGACT 59.842 41.667 0.00 0.00 0.00 3.85
2317 5410 5.355910 GTGAACTTTTTGACACTTGGGACTA 59.644 40.000 0.00 0.00 0.00 2.59
2318 5411 5.946972 TGAACTTTTTGACACTTGGGACTAA 59.053 36.000 0.00 0.00 0.00 2.24
2319 5412 6.094881 TGAACTTTTTGACACTTGGGACTAAG 59.905 38.462 0.00 0.00 0.00 2.18
2320 5413 4.887655 ACTTTTTGACACTTGGGACTAAGG 59.112 41.667 0.56 0.00 31.94 2.69
2321 5414 3.502123 TTTGACACTTGGGACTAAGGG 57.498 47.619 0.00 0.00 37.12 3.95
2322 5415 1.358152 TGACACTTGGGACTAAGGGG 58.642 55.000 2.74 0.00 35.37 4.79
2323 5416 0.618981 GACACTTGGGACTAAGGGGG 59.381 60.000 2.74 0.00 35.37 5.40
2324 5417 0.104090 ACACTTGGGACTAAGGGGGT 60.104 55.000 2.74 0.00 35.37 4.95
2325 5418 1.152701 ACACTTGGGACTAAGGGGGTA 59.847 52.381 2.74 0.00 35.37 3.69
2326 5419 1.838077 CACTTGGGACTAAGGGGGTAG 59.162 57.143 0.56 0.00 31.94 3.18
2327 5420 1.439944 ACTTGGGACTAAGGGGGTAGT 59.560 52.381 0.56 0.00 37.02 2.73
2328 5421 2.157895 ACTTGGGACTAAGGGGGTAGTT 60.158 50.000 0.56 0.00 34.40 2.24
2366 5459 1.626825 GGGGGTAGTTGACAAGCTGTA 59.373 52.381 0.00 0.00 0.00 2.74
2368 5461 2.565834 GGGGTAGTTGACAAGCTGTAGA 59.434 50.000 0.00 0.00 0.00 2.59
2429 5522 3.119280 CCTTTCAAAAGTTGTGGTTCGGT 60.119 43.478 2.09 0.00 34.20 4.69
2450 5570 2.167861 GTCCGCGGATGAGCTGTTC 61.168 63.158 33.58 11.33 34.40 3.18
2459 5579 2.027745 GGATGAGCTGTTCTGAACCTGA 60.028 50.000 17.26 3.54 0.00 3.86
2463 5583 3.641436 TGAGCTGTTCTGAACCTGAGTTA 59.359 43.478 17.26 0.00 35.94 2.24
2510 5659 3.958147 GGGACTCCCTTTTTCAGACAAAA 59.042 43.478 6.90 0.00 41.34 2.44
2511 5660 4.202121 GGGACTCCCTTTTTCAGACAAAAC 60.202 45.833 6.90 0.00 41.34 2.43
2529 5679 7.442666 AGACAAAACAAAACTGTAAAAGCCAAA 59.557 29.630 0.00 0.00 0.00 3.28
2567 5717 2.299867 GCCATTTGGTCCAAACATCTGT 59.700 45.455 19.38 0.00 36.13 3.41
2643 5861 4.224147 TCGGAATGGAAGGAAATGTCTGTA 59.776 41.667 0.00 0.00 0.00 2.74
2716 5972 0.032952 TCTCAACGGACCAAACTCGG 59.967 55.000 0.00 0.00 0.00 4.63
2763 6019 3.272334 CTGCCGCCAAGATACCGC 61.272 66.667 0.00 0.00 0.00 5.68
2780 6036 1.596477 GCTGACCGGCATGATCCTC 60.596 63.158 0.00 0.00 0.00 3.71
2806 6111 2.734606 CCTCGCAACATGTAAACGAAGA 59.265 45.455 15.71 2.80 31.60 2.87
2846 6158 6.677913 CGAACCACCAGTTTAAAGATCAAAT 58.322 36.000 0.00 0.00 39.40 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.202623 GGGCTGCGTAGACTGACG 60.203 66.667 6.25 0.00 45.70 4.35
261 265 4.555709 GGTGGTGCGGTGGTGTGA 62.556 66.667 0.00 0.00 0.00 3.58
344 1345 1.747367 CGGTCGGGCAAGGCAAATA 60.747 57.895 0.00 0.00 0.00 1.40
370 1371 5.484715 CCAGAGTGTCCGGATTTTTAGTTA 58.515 41.667 7.81 0.00 0.00 2.24
389 1390 1.552578 TAGCAAGGTCGTTAGCCAGA 58.447 50.000 0.00 0.00 0.00 3.86
390 1391 2.604046 ATAGCAAGGTCGTTAGCCAG 57.396 50.000 0.00 0.00 0.00 4.85
391 1392 2.223641 CGTATAGCAAGGTCGTTAGCCA 60.224 50.000 0.00 0.00 0.00 4.75
392 1393 2.223665 ACGTATAGCAAGGTCGTTAGCC 60.224 50.000 0.00 0.00 0.00 3.93
393 1394 3.075866 ACGTATAGCAAGGTCGTTAGC 57.924 47.619 0.00 0.00 0.00 3.09
394 1395 4.025730 TCGTACGTATAGCAAGGTCGTTAG 60.026 45.833 16.05 0.00 36.24 2.34
395 1396 3.868661 TCGTACGTATAGCAAGGTCGTTA 59.131 43.478 16.05 0.00 36.24 3.18
396 1397 2.677836 TCGTACGTATAGCAAGGTCGTT 59.322 45.455 16.05 0.00 36.24 3.85
397 1398 2.030946 GTCGTACGTATAGCAAGGTCGT 59.969 50.000 16.05 0.00 38.30 4.34
398 1399 2.030823 TGTCGTACGTATAGCAAGGTCG 59.969 50.000 16.05 0.00 0.00 4.79
399 1400 3.310774 TCTGTCGTACGTATAGCAAGGTC 59.689 47.826 16.05 0.00 0.00 3.85
400 1401 3.064545 GTCTGTCGTACGTATAGCAAGGT 59.935 47.826 16.05 0.00 0.00 3.50
401 1402 3.311871 AGTCTGTCGTACGTATAGCAAGG 59.688 47.826 16.05 0.00 0.00 3.61
402 1403 4.272480 CAGTCTGTCGTACGTATAGCAAG 58.728 47.826 16.05 4.07 0.00 4.01
403 1404 3.486375 GCAGTCTGTCGTACGTATAGCAA 60.486 47.826 16.05 0.00 0.00 3.91
404 1405 2.031314 GCAGTCTGTCGTACGTATAGCA 59.969 50.000 16.05 7.04 0.00 3.49
405 1406 2.601741 GGCAGTCTGTCGTACGTATAGC 60.602 54.545 16.05 10.93 0.00 2.97
406 1407 2.871022 AGGCAGTCTGTCGTACGTATAG 59.129 50.000 16.05 11.79 0.00 1.31
407 1408 2.610833 CAGGCAGTCTGTCGTACGTATA 59.389 50.000 16.05 2.04 38.64 1.47
408 1409 1.400846 CAGGCAGTCTGTCGTACGTAT 59.599 52.381 16.05 0.00 38.64 3.06
409 1410 0.800631 CAGGCAGTCTGTCGTACGTA 59.199 55.000 16.05 5.01 38.64 3.57
410 1411 1.579932 CAGGCAGTCTGTCGTACGT 59.420 57.895 16.05 0.00 38.64 3.57
411 1412 4.459973 CAGGCAGTCTGTCGTACG 57.540 61.111 9.53 9.53 38.64 3.67
418 1419 0.107456 AGTGTTGGACAGGCAGTCTG 59.893 55.000 9.99 0.00 46.72 3.51
419 1420 0.107456 CAGTGTTGGACAGGCAGTCT 59.893 55.000 9.99 0.00 46.72 3.24
420 1421 0.179045 ACAGTGTTGGACAGGCAGTC 60.179 55.000 0.74 0.74 46.83 3.51
421 1422 1.128200 TACAGTGTTGGACAGGCAGT 58.872 50.000 0.00 0.00 0.00 4.40
422 1423 1.512926 GTACAGTGTTGGACAGGCAG 58.487 55.000 0.00 0.00 38.11 4.85
423 1424 0.249699 CGTACAGTGTTGGACAGGCA 60.250 55.000 0.00 0.00 38.10 4.75
424 1425 0.032952 TCGTACAGTGTTGGACAGGC 59.967 55.000 0.00 0.00 38.10 4.85
425 1426 2.743636 ATCGTACAGTGTTGGACAGG 57.256 50.000 0.00 0.00 38.10 4.00
426 1427 5.055642 TCTAATCGTACAGTGTTGGACAG 57.944 43.478 0.00 1.37 38.10 3.51
427 1428 4.617530 GCTCTAATCGTACAGTGTTGGACA 60.618 45.833 0.00 0.00 38.10 4.02
428 1429 3.858238 GCTCTAATCGTACAGTGTTGGAC 59.142 47.826 0.00 0.00 34.60 4.02
429 1430 3.119245 GGCTCTAATCGTACAGTGTTGGA 60.119 47.826 0.00 0.00 0.00 3.53
430 1431 3.187700 GGCTCTAATCGTACAGTGTTGG 58.812 50.000 0.00 0.00 0.00 3.77
431 1432 3.845178 TGGCTCTAATCGTACAGTGTTG 58.155 45.455 0.00 0.00 0.00 3.33
432 1433 4.530710 TTGGCTCTAATCGTACAGTGTT 57.469 40.909 0.00 0.00 0.00 3.32
433 1434 4.530710 TTTGGCTCTAATCGTACAGTGT 57.469 40.909 0.00 0.00 0.00 3.55
434 1435 5.109210 TGATTTGGCTCTAATCGTACAGTG 58.891 41.667 0.00 0.00 35.29 3.66
435 1436 5.339008 TGATTTGGCTCTAATCGTACAGT 57.661 39.130 0.00 0.00 35.29 3.55
436 1437 7.339732 GTATGATTTGGCTCTAATCGTACAG 57.660 40.000 21.87 0.00 45.34 2.74
438 1439 7.891183 ATGTATGATTTGGCTCTAATCGTAC 57.109 36.000 20.99 20.99 45.77 3.67
440 1441 9.507329 AATTATGTATGATTTGGCTCTAATCGT 57.493 29.630 8.33 8.33 35.29 3.73
441 1442 9.979270 GAATTATGTATGATTTGGCTCTAATCG 57.021 33.333 0.00 0.00 35.29 3.34
444 1445 9.851686 ACTGAATTATGTATGATTTGGCTCTAA 57.148 29.630 0.00 0.00 0.00 2.10
445 1446 9.851686 AACTGAATTATGTATGATTTGGCTCTA 57.148 29.630 0.00 0.00 0.00 2.43
446 1447 8.757982 AACTGAATTATGTATGATTTGGCTCT 57.242 30.769 0.00 0.00 0.00 4.09
447 1448 9.241317 CAAACTGAATTATGTATGATTTGGCTC 57.759 33.333 0.00 0.00 0.00 4.70
448 1449 8.752187 ACAAACTGAATTATGTATGATTTGGCT 58.248 29.630 0.00 0.00 0.00 4.75
449 1450 8.810427 CACAAACTGAATTATGTATGATTTGGC 58.190 33.333 0.00 0.00 0.00 4.52
450 1451 9.304731 CCACAAACTGAATTATGTATGATTTGG 57.695 33.333 0.00 0.00 0.00 3.28
451 1452 9.304731 CCCACAAACTGAATTATGTATGATTTG 57.695 33.333 0.00 0.00 0.00 2.32
452 1453 7.981225 GCCCACAAACTGAATTATGTATGATTT 59.019 33.333 0.00 0.00 0.00 2.17
453 1454 7.417797 GGCCCACAAACTGAATTATGTATGATT 60.418 37.037 0.00 0.00 0.00 2.57
454 1455 6.040842 GGCCCACAAACTGAATTATGTATGAT 59.959 38.462 0.00 0.00 0.00 2.45
455 1456 5.359576 GGCCCACAAACTGAATTATGTATGA 59.640 40.000 0.00 0.00 0.00 2.15
456 1457 5.126869 TGGCCCACAAACTGAATTATGTATG 59.873 40.000 0.00 0.00 0.00 2.39
457 1458 5.268387 TGGCCCACAAACTGAATTATGTAT 58.732 37.500 0.00 0.00 0.00 2.29
458 1459 4.667573 TGGCCCACAAACTGAATTATGTA 58.332 39.130 0.00 0.00 0.00 2.29
459 1460 3.505386 TGGCCCACAAACTGAATTATGT 58.495 40.909 0.00 0.00 0.00 2.29
460 1461 4.741321 ATGGCCCACAAACTGAATTATG 57.259 40.909 0.00 0.00 0.00 1.90
461 1462 5.518865 ACTATGGCCCACAAACTGAATTAT 58.481 37.500 0.00 0.00 0.00 1.28
462 1463 4.929479 ACTATGGCCCACAAACTGAATTA 58.071 39.130 0.00 0.00 0.00 1.40
463 1464 3.778265 ACTATGGCCCACAAACTGAATT 58.222 40.909 0.00 0.00 0.00 2.17
464 1465 3.456380 ACTATGGCCCACAAACTGAAT 57.544 42.857 0.00 0.00 0.00 2.57
465 1466 2.969821 ACTATGGCCCACAAACTGAA 57.030 45.000 0.00 0.00 0.00 3.02
466 1467 2.910319 ACTACTATGGCCCACAAACTGA 59.090 45.455 0.00 0.00 0.00 3.41
467 1468 3.350219 ACTACTATGGCCCACAAACTG 57.650 47.619 0.00 0.00 0.00 3.16
468 1469 4.781087 TCTAACTACTATGGCCCACAAACT 59.219 41.667 0.00 0.00 0.00 2.66
469 1470 5.093849 TCTAACTACTATGGCCCACAAAC 57.906 43.478 0.00 0.00 0.00 2.93
470 1471 5.027460 TCTCTAACTACTATGGCCCACAAA 58.973 41.667 0.00 0.00 0.00 2.83
471 1472 4.616553 TCTCTAACTACTATGGCCCACAA 58.383 43.478 0.00 0.00 0.00 3.33
472 1473 4.259933 TCTCTAACTACTATGGCCCACA 57.740 45.455 0.00 0.00 0.00 4.17
473 1474 4.561734 GCATCTCTAACTACTATGGCCCAC 60.562 50.000 0.00 0.00 0.00 4.61
474 1475 3.578716 GCATCTCTAACTACTATGGCCCA 59.421 47.826 0.00 0.00 0.00 5.36
475 1476 3.367498 CGCATCTCTAACTACTATGGCCC 60.367 52.174 0.00 0.00 0.00 5.80
476 1477 3.256136 ACGCATCTCTAACTACTATGGCC 59.744 47.826 0.00 0.00 0.00 5.36
477 1478 4.506886 ACGCATCTCTAACTACTATGGC 57.493 45.455 0.00 0.00 0.00 4.40
478 1479 4.681942 GCAACGCATCTCTAACTACTATGG 59.318 45.833 0.00 0.00 0.00 2.74
479 1480 5.524284 AGCAACGCATCTCTAACTACTATG 58.476 41.667 0.00 0.00 0.00 2.23
480 1481 5.533154 AGAGCAACGCATCTCTAACTACTAT 59.467 40.000 0.00 0.00 37.86 2.12
481 1482 4.882427 AGAGCAACGCATCTCTAACTACTA 59.118 41.667 0.00 0.00 37.86 1.82
482 1483 3.697045 AGAGCAACGCATCTCTAACTACT 59.303 43.478 0.00 0.00 37.86 2.57
483 1484 4.035278 AGAGCAACGCATCTCTAACTAC 57.965 45.455 0.00 0.00 37.86 2.73
484 1485 4.294416 GAGAGCAACGCATCTCTAACTA 57.706 45.455 1.59 0.00 39.57 2.24
485 1486 3.157932 GAGAGCAACGCATCTCTAACT 57.842 47.619 1.59 0.00 39.57 2.24
490 1491 0.108424 ACCAGAGAGCAACGCATCTC 60.108 55.000 7.11 7.11 41.90 2.75
491 1492 0.108424 GACCAGAGAGCAACGCATCT 60.108 55.000 0.00 0.00 0.00 2.90
492 1493 0.390340 TGACCAGAGAGCAACGCATC 60.390 55.000 0.00 0.00 0.00 3.91
493 1494 0.251354 ATGACCAGAGAGCAACGCAT 59.749 50.000 0.00 0.00 0.00 4.73
494 1495 0.894835 TATGACCAGAGAGCAACGCA 59.105 50.000 0.00 0.00 0.00 5.24
495 1496 1.281899 GTATGACCAGAGAGCAACGC 58.718 55.000 0.00 0.00 0.00 4.84
496 1497 2.534298 CTGTATGACCAGAGAGCAACG 58.466 52.381 0.00 0.00 34.23 4.10
497 1498 2.234908 ACCTGTATGACCAGAGAGCAAC 59.765 50.000 0.00 0.00 34.23 4.17
498 1499 2.497675 GACCTGTATGACCAGAGAGCAA 59.502 50.000 0.00 0.00 34.23 3.91
499 1500 2.103373 GACCTGTATGACCAGAGAGCA 58.897 52.381 0.00 0.00 34.23 4.26
500 1501 1.066303 CGACCTGTATGACCAGAGAGC 59.934 57.143 0.00 0.00 34.23 4.09
501 1502 1.678627 CCGACCTGTATGACCAGAGAG 59.321 57.143 0.00 0.00 34.23 3.20
502 1503 1.283905 TCCGACCTGTATGACCAGAGA 59.716 52.381 0.00 0.00 34.23 3.10
503 1504 1.763968 TCCGACCTGTATGACCAGAG 58.236 55.000 0.00 0.00 34.23 3.35
504 1505 2.031870 CATCCGACCTGTATGACCAGA 58.968 52.381 0.00 0.00 34.23 3.86
505 1506 1.069204 CCATCCGACCTGTATGACCAG 59.931 57.143 0.00 0.00 0.00 4.00
506 1507 1.119684 CCATCCGACCTGTATGACCA 58.880 55.000 0.00 0.00 0.00 4.02
507 1508 1.410004 TCCATCCGACCTGTATGACC 58.590 55.000 0.00 0.00 0.00 4.02
508 1509 3.536956 TTTCCATCCGACCTGTATGAC 57.463 47.619 0.00 0.00 0.00 3.06
509 1510 4.561500 TTTTTCCATCCGACCTGTATGA 57.438 40.909 0.00 0.00 0.00 2.15
510 1511 4.881273 TGATTTTTCCATCCGACCTGTATG 59.119 41.667 0.00 0.00 0.00 2.39
511 1512 5.110814 TGATTTTTCCATCCGACCTGTAT 57.889 39.130 0.00 0.00 0.00 2.29
512 1513 4.561500 TGATTTTTCCATCCGACCTGTA 57.438 40.909 0.00 0.00 0.00 2.74
513 1514 3.433306 TGATTTTTCCATCCGACCTGT 57.567 42.857 0.00 0.00 0.00 4.00
514 1515 3.002656 CGATGATTTTTCCATCCGACCTG 59.997 47.826 0.00 0.00 37.67 4.00
515 1516 3.206150 CGATGATTTTTCCATCCGACCT 58.794 45.455 0.00 0.00 37.67 3.85
516 1517 2.943033 ACGATGATTTTTCCATCCGACC 59.057 45.455 0.00 0.00 37.67 4.79
517 1518 4.317839 CGTACGATGATTTTTCCATCCGAC 60.318 45.833 10.44 0.00 37.67 4.79
518 1519 3.799963 CGTACGATGATTTTTCCATCCGA 59.200 43.478 10.44 0.00 37.67 4.55
519 1520 3.554324 ACGTACGATGATTTTTCCATCCG 59.446 43.478 24.41 0.00 37.67 4.18
520 1521 5.981315 TCTACGTACGATGATTTTTCCATCC 59.019 40.000 24.41 0.00 37.67 3.51
521 1522 6.345882 GCTCTACGTACGATGATTTTTCCATC 60.346 42.308 24.41 0.00 37.60 3.51
522 1523 5.462398 GCTCTACGTACGATGATTTTTCCAT 59.538 40.000 24.41 0.00 0.00 3.41
523 1524 4.802039 GCTCTACGTACGATGATTTTTCCA 59.198 41.667 24.41 0.00 0.00 3.53
524 1525 4.802039 TGCTCTACGTACGATGATTTTTCC 59.198 41.667 24.41 0.18 0.00 3.13
525 1526 5.515626 ACTGCTCTACGTACGATGATTTTTC 59.484 40.000 24.41 2.35 0.00 2.29
526 1527 5.408356 ACTGCTCTACGTACGATGATTTTT 58.592 37.500 24.41 0.00 0.00 1.94
527 1528 4.995124 ACTGCTCTACGTACGATGATTTT 58.005 39.130 24.41 0.00 0.00 1.82
528 1529 4.634184 ACTGCTCTACGTACGATGATTT 57.366 40.909 24.41 0.00 0.00 2.17
529 1530 4.634184 AACTGCTCTACGTACGATGATT 57.366 40.909 24.41 0.61 0.00 2.57
530 1531 4.634184 AAACTGCTCTACGTACGATGAT 57.366 40.909 24.41 1.05 0.00 2.45
531 1532 4.163552 CAAAACTGCTCTACGTACGATGA 58.836 43.478 24.41 17.14 0.00 2.92
532 1533 3.241678 GCAAAACTGCTCTACGTACGATG 60.242 47.826 24.41 13.70 0.00 3.84
533 1534 2.921754 GCAAAACTGCTCTACGTACGAT 59.078 45.455 24.41 8.93 0.00 3.73
534 1535 2.030540 AGCAAAACTGCTCTACGTACGA 60.031 45.455 24.41 4.69 42.12 3.43
535 1536 2.325761 AGCAAAACTGCTCTACGTACG 58.674 47.619 15.01 15.01 42.12 3.67
545 1546 1.882623 AGTTAGCCAGAGCAAAACTGC 59.117 47.619 5.38 0.00 42.52 4.40
546 1547 3.364366 CGAAGTTAGCCAGAGCAAAACTG 60.364 47.826 6.58 0.00 43.00 3.16
547 1548 2.808543 CGAAGTTAGCCAGAGCAAAACT 59.191 45.455 0.00 0.00 44.63 2.66
548 1549 2.665794 GCGAAGTTAGCCAGAGCAAAAC 60.666 50.000 0.00 0.00 43.56 2.43
549 1550 1.535462 GCGAAGTTAGCCAGAGCAAAA 59.465 47.619 0.00 0.00 43.56 2.44
550 1551 1.156736 GCGAAGTTAGCCAGAGCAAA 58.843 50.000 0.00 0.00 43.56 3.68
551 1552 0.321671 AGCGAAGTTAGCCAGAGCAA 59.678 50.000 4.17 0.00 43.56 3.91
552 1553 0.321671 AAGCGAAGTTAGCCAGAGCA 59.678 50.000 4.17 0.00 43.56 4.26
553 1554 0.723981 CAAGCGAAGTTAGCCAGAGC 59.276 55.000 4.17 0.00 40.32 4.09
594 1595 7.820386 TGCAAAGTAATACTCGAAATAGGTGAA 59.180 33.333 0.00 0.00 0.00 3.18
670 3705 1.035139 TATCGCATGCAGCTCTCTGA 58.965 50.000 19.57 4.19 42.95 3.27
729 3772 8.267183 TCAACCATAAGTCATCACATATTCACT 58.733 33.333 0.00 0.00 0.00 3.41
747 3790 3.719268 AGTGCAATGACCTCAACCATA 57.281 42.857 0.00 0.00 0.00 2.74
751 3794 2.397549 GCAAAGTGCAATGACCTCAAC 58.602 47.619 0.00 0.00 44.26 3.18
780 3831 1.412079 TGCTGGTCAATGCCAAAAGT 58.588 45.000 0.00 0.00 38.18 2.66
922 3973 3.331150 ACGCGTGTGATTTTGAGGAATA 58.669 40.909 12.93 0.00 0.00 1.75
937 3988 1.280982 ACTCTGATTATGCACGCGTG 58.719 50.000 34.01 34.01 0.00 5.34
983 4039 1.484240 CCATTGGTGAGAGGAGAGTCC 59.516 57.143 0.00 0.00 36.58 3.85
1026 4092 3.283812 AACGGCGAGGAGGAGGAGA 62.284 63.158 16.62 0.00 0.00 3.71
1033 4099 0.108615 AAGACATGAACGGCGAGGAG 60.109 55.000 16.62 1.35 0.00 3.69
1082 4148 6.994421 TGGAATCATTGTAGGTGCTAGATA 57.006 37.500 0.00 0.00 0.00 1.98
1128 4194 4.260212 GGATATTTGATGTCAACGTCACCG 60.260 45.833 4.57 0.00 41.18 4.94
1133 4199 5.734720 AGAGTGGATATTTGATGTCAACGT 58.265 37.500 0.00 0.00 35.28 3.99
1153 4219 6.347240 GCTTGAGTTGTGTTTGACAGATAGAG 60.347 42.308 0.00 0.00 35.44 2.43
1192 4258 1.506493 CCGCATGAGAAGTAGGATGC 58.494 55.000 0.00 0.00 38.26 3.91
1227 4293 0.465705 CCTCGCCTTGGCAGAAGATA 59.534 55.000 12.45 0.00 0.00 1.98
1264 4330 5.046591 AGTTGTATTGATCGAGTGGAAGGAA 60.047 40.000 0.00 0.00 0.00 3.36
1316 4391 0.734889 CCCAAGAATGATGGTGCGAC 59.265 55.000 0.00 0.00 36.14 5.19
1319 4394 1.106285 GTCCCCAAGAATGATGGTGC 58.894 55.000 0.00 0.00 36.14 5.01
1332 4407 1.774217 AAGGGCTTCAGTGTCCCCA 60.774 57.895 14.80 0.00 40.97 4.96
1355 4433 2.111043 CTGTGGGGCACTTGACGT 59.889 61.111 0.00 0.00 35.11 4.34
1396 4474 2.541178 CGGTGTATTCTAGCCACTCGTC 60.541 54.545 0.00 0.00 0.00 4.20
1477 4555 3.730215 TTCTAGCAGAGACTCAGGAGT 57.270 47.619 5.02 0.70 45.84 3.85
1485 4563 5.140747 TCTGGAACTTTTCTAGCAGAGAC 57.859 43.478 0.00 0.00 38.08 3.36
1490 4568 4.220821 AGTCGATCTGGAACTTTTCTAGCA 59.779 41.667 0.00 0.00 38.08 3.49
1561 4639 5.305585 GTTGTCATCCTCAGAGGTAAACAA 58.694 41.667 16.65 18.90 36.53 2.83
1566 4644 2.803956 ACGTTGTCATCCTCAGAGGTA 58.196 47.619 16.65 3.78 36.53 3.08
1589 4667 1.269102 CCGCCAATTCGTACTCTCGAT 60.269 52.381 0.00 0.00 39.57 3.59
1608 4686 4.479993 ATCCGGCTGCAGTGCTCC 62.480 66.667 17.60 15.78 0.00 4.70
1701 4782 3.070018 CAACTCGAATCCTTGCTTGAGT 58.930 45.455 0.00 0.00 38.25 3.41
1907 4997 9.031537 ACGGGAATAAAATTTAAGGATCAGTTT 57.968 29.630 0.00 0.00 0.00 2.66
1932 5023 1.281656 CGGCCGTTTGTTTCCAGAC 59.718 57.895 19.50 0.00 0.00 3.51
1937 5028 1.794512 TACTACCGGCCGTTTGTTTC 58.205 50.000 26.12 0.00 0.00 2.78
1951 5042 6.712547 AGGAATTGGCAAGCAAGATATACTAC 59.287 38.462 5.96 0.00 0.00 2.73
1962 5053 0.178938 TGGGAAGGAATTGGCAAGCA 60.179 50.000 5.96 0.00 0.00 3.91
1985 5076 0.178975 ATTGGGTTTGTCTTCCGGCA 60.179 50.000 0.00 0.00 0.00 5.69
2051 5142 5.011738 ACACTCTTATATTATGGGACGGTGG 59.988 44.000 0.00 0.00 0.00 4.61
2108 5201 3.321682 CCCAAAAGCTCAAACTGATGGAA 59.678 43.478 0.00 0.00 31.13 3.53
2109 5202 2.892852 CCCAAAAGCTCAAACTGATGGA 59.107 45.455 0.00 0.00 31.13 3.41
2113 5206 3.011566 TCACCCAAAAGCTCAAACTGA 57.988 42.857 0.00 0.00 0.00 3.41
2114 5207 3.131046 AGTTCACCCAAAAGCTCAAACTG 59.869 43.478 0.00 0.00 0.00 3.16
2117 5210 3.130340 GTCAGTTCACCCAAAAGCTCAAA 59.870 43.478 0.00 0.00 0.00 2.69
2120 5213 2.291741 CAGTCAGTTCACCCAAAAGCTC 59.708 50.000 0.00 0.00 0.00 4.09
2122 5215 2.297701 TCAGTCAGTTCACCCAAAAGC 58.702 47.619 0.00 0.00 0.00 3.51
2129 5222 0.792640 CACGCATCAGTCAGTTCACC 59.207 55.000 0.00 0.00 0.00 4.02
2135 5228 0.441533 GAACTGCACGCATCAGTCAG 59.558 55.000 5.46 0.00 43.36 3.51
2138 5231 2.680312 ATAGAACTGCACGCATCAGT 57.320 45.000 0.00 0.00 45.83 3.41
2141 5234 3.393800 ACCATATAGAACTGCACGCATC 58.606 45.455 0.00 0.00 0.00 3.91
2142 5235 3.475566 ACCATATAGAACTGCACGCAT 57.524 42.857 0.00 0.00 0.00 4.73
2176 5269 6.183360 CGTAAAACTACACGCATCTCAAGATT 60.183 38.462 0.00 0.00 31.21 2.40
2177 5270 5.288712 CGTAAAACTACACGCATCTCAAGAT 59.711 40.000 0.00 0.00 34.56 2.40
2180 5273 4.149221 CACGTAAAACTACACGCATCTCAA 59.851 41.667 0.00 0.00 41.80 3.02
2185 5278 2.758009 ACCACGTAAAACTACACGCAT 58.242 42.857 0.00 0.00 41.80 4.73
2186 5279 2.222007 ACCACGTAAAACTACACGCA 57.778 45.000 0.00 0.00 41.80 5.24
2187 5280 3.001758 CGATACCACGTAAAACTACACGC 60.002 47.826 0.00 0.00 41.80 5.34
2188 5281 4.402583 TCGATACCACGTAAAACTACACG 58.597 43.478 0.00 0.00 43.63 4.49
2189 5282 6.689178 TTTCGATACCACGTAAAACTACAC 57.311 37.500 0.00 0.00 34.70 2.90
2190 5283 7.089538 TGATTTCGATACCACGTAAAACTACA 58.910 34.615 0.00 0.00 34.70 2.74
2191 5284 7.510428 TGATTTCGATACCACGTAAAACTAC 57.490 36.000 0.00 0.00 34.70 2.73
2192 5285 8.028354 TCTTGATTTCGATACCACGTAAAACTA 58.972 33.333 0.00 0.00 34.70 2.24
2193 5286 6.869913 TCTTGATTTCGATACCACGTAAAACT 59.130 34.615 0.00 0.00 34.70 2.66
2194 5287 7.052565 TCTTGATTTCGATACCACGTAAAAC 57.947 36.000 0.00 0.00 34.70 2.43
2195 5288 7.092079 TCTCTTGATTTCGATACCACGTAAAA 58.908 34.615 0.00 0.00 34.70 1.52
2196 5289 6.623486 TCTCTTGATTTCGATACCACGTAAA 58.377 36.000 0.00 0.00 34.70 2.01
2197 5290 6.198650 TCTCTTGATTTCGATACCACGTAA 57.801 37.500 0.00 0.00 34.70 3.18
2198 5291 5.823209 TCTCTTGATTTCGATACCACGTA 57.177 39.130 0.00 0.00 34.70 3.57
2199 5292 4.713824 TCTCTTGATTTCGATACCACGT 57.286 40.909 0.00 0.00 34.70 4.49
2200 5293 5.524284 AGATCTCTTGATTTCGATACCACG 58.476 41.667 0.00 0.00 32.19 4.94
2223 5316 2.575532 CCAGCCAAGTCTTGAACTCAA 58.424 47.619 14.42 0.00 37.17 3.02
2224 5317 1.815408 GCCAGCCAAGTCTTGAACTCA 60.815 52.381 14.42 0.00 37.17 3.41
2225 5318 0.877743 GCCAGCCAAGTCTTGAACTC 59.122 55.000 14.42 0.80 37.17 3.01
2226 5319 0.475906 AGCCAGCCAAGTCTTGAACT 59.524 50.000 14.42 8.07 41.10 3.01
2227 5320 1.322442 AAGCCAGCCAAGTCTTGAAC 58.678 50.000 14.42 5.87 0.00 3.18
2228 5321 2.071778 AAAGCCAGCCAAGTCTTGAA 57.928 45.000 14.42 0.00 0.00 2.69
2229 5322 2.949177 TAAAGCCAGCCAAGTCTTGA 57.051 45.000 14.42 0.00 0.00 3.02
2230 5323 4.525912 AATTAAAGCCAGCCAAGTCTTG 57.474 40.909 5.53 5.53 0.00 3.02
2236 5329 5.555017 TGCAATTTAATTAAAGCCAGCCAA 58.445 33.333 15.45 1.40 0.00 4.52
2237 5330 5.157940 TGCAATTTAATTAAAGCCAGCCA 57.842 34.783 15.45 5.08 0.00 4.75
2239 5332 4.872124 AGCTGCAATTTAATTAAAGCCAGC 59.128 37.500 29.66 29.66 40.61 4.85
2243 5336 9.830294 AAAAATGAGCTGCAATTTAATTAAAGC 57.170 25.926 15.45 14.01 29.70 3.51
2266 5359 7.732222 AATCAGGCCTAAACATGGATAAAAA 57.268 32.000 3.98 0.00 0.00 1.94
2269 5362 6.542821 CCTAATCAGGCCTAAACATGGATAA 58.457 40.000 3.98 0.00 34.35 1.75
2270 5363 6.126863 CCTAATCAGGCCTAAACATGGATA 57.873 41.667 3.98 0.00 34.35 2.59
2271 5364 4.990526 CCTAATCAGGCCTAAACATGGAT 58.009 43.478 3.98 0.00 34.35 3.41
2272 5365 4.437682 CCTAATCAGGCCTAAACATGGA 57.562 45.455 3.98 0.00 34.35 3.41
2285 5378 7.264373 AGTGTCAAAAAGTTCACCTAATCAG 57.736 36.000 0.00 0.00 0.00 2.90
2286 5379 7.416213 CCAAGTGTCAAAAAGTTCACCTAATCA 60.416 37.037 0.00 0.00 0.00 2.57
2287 5380 6.918022 CCAAGTGTCAAAAAGTTCACCTAATC 59.082 38.462 0.00 0.00 0.00 1.75
2288 5381 6.183360 CCCAAGTGTCAAAAAGTTCACCTAAT 60.183 38.462 0.00 0.00 0.00 1.73
2289 5382 5.126384 CCCAAGTGTCAAAAAGTTCACCTAA 59.874 40.000 0.00 0.00 0.00 2.69
2290 5383 4.642885 CCCAAGTGTCAAAAAGTTCACCTA 59.357 41.667 0.00 0.00 0.00 3.08
2291 5384 3.447229 CCCAAGTGTCAAAAAGTTCACCT 59.553 43.478 0.00 0.00 0.00 4.00
2292 5385 3.445805 TCCCAAGTGTCAAAAAGTTCACC 59.554 43.478 0.00 0.00 0.00 4.02
2293 5386 4.157840 AGTCCCAAGTGTCAAAAAGTTCAC 59.842 41.667 0.00 0.00 0.00 3.18
2294 5387 4.340617 AGTCCCAAGTGTCAAAAAGTTCA 58.659 39.130 0.00 0.00 0.00 3.18
2295 5388 4.983671 AGTCCCAAGTGTCAAAAAGTTC 57.016 40.909 0.00 0.00 0.00 3.01
2296 5389 5.359860 CCTTAGTCCCAAGTGTCAAAAAGTT 59.640 40.000 0.00 0.00 0.00 2.66
2297 5390 4.887655 CCTTAGTCCCAAGTGTCAAAAAGT 59.112 41.667 0.00 0.00 0.00 2.66
2298 5391 4.278419 CCCTTAGTCCCAAGTGTCAAAAAG 59.722 45.833 0.00 0.00 0.00 2.27
2299 5392 4.211920 CCCTTAGTCCCAAGTGTCAAAAA 58.788 43.478 0.00 0.00 0.00 1.94
2300 5393 3.435890 CCCCTTAGTCCCAAGTGTCAAAA 60.436 47.826 0.00 0.00 0.00 2.44
2301 5394 2.107552 CCCCTTAGTCCCAAGTGTCAAA 59.892 50.000 0.00 0.00 0.00 2.69
2302 5395 1.702957 CCCCTTAGTCCCAAGTGTCAA 59.297 52.381 0.00 0.00 0.00 3.18
2303 5396 1.358152 CCCCTTAGTCCCAAGTGTCA 58.642 55.000 0.00 0.00 0.00 3.58
2304 5397 0.618981 CCCCCTTAGTCCCAAGTGTC 59.381 60.000 0.00 0.00 0.00 3.67
2305 5398 0.104090 ACCCCCTTAGTCCCAAGTGT 60.104 55.000 0.00 0.00 0.00 3.55
2306 5399 1.838077 CTACCCCCTTAGTCCCAAGTG 59.162 57.143 0.00 0.00 0.00 3.16
2307 5400 1.439944 ACTACCCCCTTAGTCCCAAGT 59.560 52.381 0.00 0.00 0.00 3.16
2308 5401 2.265526 ACTACCCCCTTAGTCCCAAG 57.734 55.000 0.00 0.00 0.00 3.61
2309 5402 2.747083 AACTACCCCCTTAGTCCCAA 57.253 50.000 0.00 0.00 30.65 4.12
2310 5403 2.747083 AAACTACCCCCTTAGTCCCA 57.253 50.000 0.00 0.00 30.65 4.37
2338 5431 2.258109 GTCAACTACCCCCTCAGTTCT 58.742 52.381 0.00 0.00 32.72 3.01
2339 5432 1.975680 TGTCAACTACCCCCTCAGTTC 59.024 52.381 0.00 0.00 32.72 3.01
2340 5433 2.112279 TGTCAACTACCCCCTCAGTT 57.888 50.000 0.00 0.00 35.38 3.16
2341 5434 1.978580 CTTGTCAACTACCCCCTCAGT 59.021 52.381 0.00 0.00 0.00 3.41
2342 5435 1.339151 GCTTGTCAACTACCCCCTCAG 60.339 57.143 0.00 0.00 0.00 3.35
2343 5436 0.690762 GCTTGTCAACTACCCCCTCA 59.309 55.000 0.00 0.00 0.00 3.86
2344 5437 0.984995 AGCTTGTCAACTACCCCCTC 59.015 55.000 0.00 0.00 0.00 4.30
2346 5439 0.400594 ACAGCTTGTCAACTACCCCC 59.599 55.000 0.00 0.00 0.00 5.40
2347 5440 2.565834 TCTACAGCTTGTCAACTACCCC 59.434 50.000 0.00 0.00 0.00 4.95
2348 5441 3.851098 CTCTACAGCTTGTCAACTACCC 58.149 50.000 0.00 0.00 0.00 3.69
2349 5442 3.254892 GCTCTACAGCTTGTCAACTACC 58.745 50.000 0.00 0.00 43.09 3.18
2366 5459 1.178276 CCTCCTGTTACTGACGCTCT 58.822 55.000 0.00 0.00 0.00 4.09
2368 5461 0.900647 AGCCTCCTGTTACTGACGCT 60.901 55.000 0.00 0.00 0.00 5.07
2429 5522 3.390521 AGCTCATCCGCGGACCAA 61.391 61.111 33.75 17.80 34.40 3.67
2438 5531 2.027745 TCAGGTTCAGAACAGCTCATCC 60.028 50.000 15.36 0.00 0.00 3.51
2443 5536 3.643792 ACTAACTCAGGTTCAGAACAGCT 59.356 43.478 15.36 1.05 36.92 4.24
2450 5570 5.485209 AGGGTAAACTAACTCAGGTTCAG 57.515 43.478 0.00 0.00 35.22 3.02
2459 5579 5.455755 GGAAGTCACCAAGGGTAAACTAACT 60.456 44.000 3.82 0.00 32.18 2.24
2463 5583 2.224450 CGGAAGTCACCAAGGGTAAACT 60.224 50.000 0.00 0.00 33.95 2.66
2493 5613 6.648725 CAGTTTTGTTTTGTCTGAAAAAGGGA 59.351 34.615 0.00 0.00 29.93 4.20
2529 5679 6.149807 CCAAATGGCAAATGAGCTGTTAATTT 59.850 34.615 0.00 0.00 34.17 1.82
2567 5717 5.308014 CCAAGTGCATACATATAAGGCAGA 58.692 41.667 0.00 0.00 34.78 4.26
2621 5839 3.347216 ACAGACATTTCCTTCCATTCCG 58.653 45.455 0.00 0.00 0.00 4.30
2643 5861 2.443255 ACCCACAGAACAGTTTCCTGAT 59.557 45.455 8.62 0.00 41.50 2.90
2716 5972 2.227865 GTCGTCTGCCATCTCTATCTCC 59.772 54.545 0.00 0.00 0.00 3.71
2763 6019 1.070445 GGAGGATCATGCCGGTCAG 59.930 63.158 1.90 0.00 36.25 3.51
2846 6158 4.756642 CAGCAGTAGTGTTCCATTCTTTGA 59.243 41.667 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.