Multiple sequence alignment - TraesCS3D01G260300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G260300 chr3D 100.000 2574 0 0 1 2574 362425608 362423035 0.000000e+00 4754.0
1 TraesCS3D01G260300 chr3D 90.315 2189 142 35 404 2570 362854920 362857060 0.000000e+00 2804.0
2 TraesCS3D01G260300 chr3D 100.000 168 0 0 2796 2963 362422813 362422646 7.970000e-81 311.0
3 TraesCS3D01G260300 chr3A 90.011 2623 166 48 1 2570 482938035 482935456 0.000000e+00 3304.0
4 TraesCS3D01G260300 chr3A 92.069 2131 121 20 453 2548 482929320 482927203 0.000000e+00 2955.0
5 TraesCS3D01G260300 chr3A 80.556 432 70 8 2137 2564 740518337 740518758 1.330000e-83 320.0
6 TraesCS3D01G260300 chr3A 80.556 432 70 8 2137 2564 740573508 740573929 1.330000e-83 320.0
7 TraesCS3D01G260300 chr3A 74.869 191 38 9 36 219 522186848 522186661 8.810000e-11 78.7
8 TraesCS3D01G260300 chr3B 92.892 2279 104 15 6 2262 472307897 472305655 0.000000e+00 3258.0
9 TraesCS3D01G260300 chr3B 90.559 1324 107 8 1244 2559 472586375 472587688 0.000000e+00 1736.0
10 TraesCS3D01G260300 chr3B 88.654 520 31 5 750 1244 472584790 472585306 2.530000e-170 608.0
11 TraesCS3D01G260300 chr3B 92.453 318 19 4 404 718 472584478 472584793 1.620000e-122 449.0
12 TraesCS3D01G260300 chr7B 82.973 740 118 7 1233 1968 727536975 727536240 0.000000e+00 662.0
13 TraesCS3D01G260300 chr7B 92.771 83 2 3 2881 2963 271382436 271382514 1.870000e-22 117.0
14 TraesCS3D01G260300 chr7B 93.671 79 2 2 2885 2963 269704539 269704614 6.710000e-22 115.0
15 TraesCS3D01G260300 chr7B 88.889 90 5 3 2876 2963 531437591 531437677 4.040000e-19 106.0
16 TraesCS3D01G260300 chr1B 79.832 952 153 26 1021 1957 458081534 458082461 0.000000e+00 658.0
17 TraesCS3D01G260300 chr1B 79.097 952 151 27 1021 1957 458129703 458130621 1.950000e-171 612.0
18 TraesCS3D01G260300 chr1D 79.495 951 149 25 1021 1957 342170303 342171221 4.170000e-178 634.0
19 TraesCS3D01G260300 chr2B 89.437 142 14 1 1055 1195 23576320 23576461 8.440000e-41 178.0
20 TraesCS3D01G260300 chr2D 88.732 142 15 1 1055 1195 12875800 12875941 3.930000e-39 172.0
21 TraesCS3D01G260300 chr2D 86.275 51 6 1 29 78 608925003 608924953 1.000000e-03 54.7
22 TraesCS3D01G260300 chr1A 83.735 166 27 0 1021 1186 441842042 441842207 1.100000e-34 158.0
23 TraesCS3D01G260300 chr5D 92.771 83 3 2 2881 2963 356341960 356341881 1.870000e-22 117.0
24 TraesCS3D01G260300 chr4D 90.909 88 4 3 2876 2963 21867244 21867161 6.710000e-22 115.0
25 TraesCS3D01G260300 chr6B 91.566 83 3 3 2881 2963 506879537 506879615 8.680000e-21 111.0
26 TraesCS3D01G260300 chr5B 88.172 93 6 3 2873 2963 62995525 62995436 4.040000e-19 106.0
27 TraesCS3D01G260300 chr6A 89.157 83 6 2 2881 2963 36943027 36942948 1.880000e-17 100.0
28 TraesCS3D01G260300 chr6A 91.111 45 1 2 544 585 599757461 599757505 1.150000e-04 58.4
29 TraesCS3D01G260300 chr5A 87.640 89 5 4 2877 2963 658608920 658609004 6.760000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G260300 chr3D 362422646 362425608 2962 True 2532.5 4754 100.000000 1 2963 2 chr3D.!!$R1 2962
1 TraesCS3D01G260300 chr3D 362854920 362857060 2140 False 2804.0 2804 90.315000 404 2570 1 chr3D.!!$F1 2166
2 TraesCS3D01G260300 chr3A 482935456 482938035 2579 True 3304.0 3304 90.011000 1 2570 1 chr3A.!!$R2 2569
3 TraesCS3D01G260300 chr3A 482927203 482929320 2117 True 2955.0 2955 92.069000 453 2548 1 chr3A.!!$R1 2095
4 TraesCS3D01G260300 chr3B 472305655 472307897 2242 True 3258.0 3258 92.892000 6 2262 1 chr3B.!!$R1 2256
5 TraesCS3D01G260300 chr3B 472584478 472587688 3210 False 931.0 1736 90.555333 404 2559 3 chr3B.!!$F1 2155
6 TraesCS3D01G260300 chr7B 727536240 727536975 735 True 662.0 662 82.973000 1233 1968 1 chr7B.!!$R1 735
7 TraesCS3D01G260300 chr1B 458081534 458082461 927 False 658.0 658 79.832000 1021 1957 1 chr1B.!!$F1 936
8 TraesCS3D01G260300 chr1B 458129703 458130621 918 False 612.0 612 79.097000 1021 1957 1 chr1B.!!$F2 936
9 TraesCS3D01G260300 chr1D 342170303 342171221 918 False 634.0 634 79.495000 1021 1957 1 chr1D.!!$F1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 1003 0.46187 AAGACGTGCACTGCAACAGA 60.462 50.0 16.19 0.0 41.47 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2880 4106 0.038166 GGGGTCACCATGCTCTTTCA 59.962 55.0 0.0 0.0 39.85 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 82 5.789574 TTGGGATATCAAACCTAGGTGTT 57.210 39.130 17.14 9.25 0.00 3.32
103 106 8.778358 GTTCAATCTACTCTCATGTGAAGTTTT 58.222 33.333 0.00 0.00 0.00 2.43
156 161 8.365210 CGATGAAAAGACAAAAATAATCCAACG 58.635 33.333 0.00 0.00 0.00 4.10
198 207 2.125961 GGATCGTAGGCCGGACTGT 61.126 63.158 23.83 2.39 37.11 3.55
271 280 2.168521 CGTGAGTAGATTGGACACCCAT 59.831 50.000 0.00 0.00 43.12 4.00
280 289 5.769835 AGATTGGACACCCATGTTTGATAT 58.230 37.500 0.00 0.00 43.12 1.63
293 319 7.289782 CCCATGTTTGATATCCCCAAATTCTAA 59.710 37.037 0.00 0.00 36.14 2.10
376 407 2.930682 GAGCTCCAGTGTATTTTCCGTC 59.069 50.000 0.87 0.00 0.00 4.79
386 417 4.269363 GTGTATTTTCCGTCGTAATGGAGG 59.731 45.833 0.00 0.00 41.66 4.30
520 566 0.888736 TCCATCCATTAATGCGGCGG 60.889 55.000 9.78 7.38 0.00 6.13
613 686 1.351017 AGCGGGAGAAAAATCTGACCA 59.649 47.619 0.00 0.00 0.00 4.02
614 687 1.740025 GCGGGAGAAAAATCTGACCAG 59.260 52.381 0.00 0.00 0.00 4.00
615 688 1.740025 CGGGAGAAAAATCTGACCAGC 59.260 52.381 0.00 0.00 0.00 4.85
618 691 3.416156 GGAGAAAAATCTGACCAGCAGT 58.584 45.455 0.00 0.00 45.14 4.40
621 694 1.985473 AAAATCTGACCAGCAGTGCA 58.015 45.000 19.20 0.00 45.14 4.57
623 696 1.242076 AATCTGACCAGCAGTGCAAC 58.758 50.000 19.20 5.93 45.14 4.17
827 909 1.202592 TGCCGAACTTGCTTGTACTGA 60.203 47.619 0.00 0.00 0.00 3.41
829 911 1.461127 CCGAACTTGCTTGTACTGAGC 59.539 52.381 12.93 12.93 40.53 4.26
841 923 4.966965 TGTACTGAGCAGCTAGACTAAC 57.033 45.455 0.00 0.00 0.00 2.34
900 982 1.303309 CTGTGGCTTGCTGGCTATAC 58.697 55.000 5.59 2.75 42.34 1.47
921 1003 0.461870 AAGACGTGCACTGCAACAGA 60.462 50.000 16.19 0.00 41.47 3.41
989 1100 4.182132 CTGAGCGGACTCTGCTTG 57.818 61.111 13.79 6.62 44.18 4.01
1019 1130 0.326264 ATGAGAGGAGTTGTGGTGGC 59.674 55.000 0.00 0.00 0.00 5.01
1425 2629 1.137825 GTTCCTCGCTCAGACCTCG 59.862 63.158 0.00 0.00 0.00 4.63
1644 2848 1.376424 CAGCACCGACCTGCTCAAT 60.376 57.895 0.00 0.00 44.58 2.57
2004 3212 5.163814 GCGAGAAGACATGCAATAAAGACTT 60.164 40.000 0.00 0.00 0.00 3.01
2072 3286 2.287915 ACAAGCGAATAATGGTGCGATC 59.712 45.455 0.00 0.00 0.00 3.69
2135 3350 4.394729 TGGTGTGTTCCTATCCAAGTTTC 58.605 43.478 0.00 0.00 0.00 2.78
2173 3388 5.515270 GCATTTAGCCCGACTTCAAATTAAC 59.485 40.000 0.00 0.00 37.23 2.01
2177 3392 3.435671 AGCCCGACTTCAAATTAACGAAG 59.564 43.478 9.49 9.49 43.48 3.79
2186 3401 5.957842 TCAAATTAACGAAGCCATCAACT 57.042 34.783 0.00 0.00 0.00 3.16
2206 3421 3.200825 ACTGGCTAGGATACAAAGTGCAT 59.799 43.478 0.85 0.00 41.41 3.96
2284 3499 2.047002 GCCCAAGGCCGAAACTATAA 57.953 50.000 0.00 0.00 44.06 0.98
2319 3534 1.535860 GCGAAACTGCCAACACAATGT 60.536 47.619 0.00 0.00 0.00 2.71
2500 3725 0.691078 TCTCCCCTACATCCAGCACC 60.691 60.000 0.00 0.00 0.00 5.01
2570 3796 1.864176 CGAAGGGTAACAACGCACC 59.136 57.895 0.00 0.00 39.74 5.01
2812 4038 2.361483 ATTGCACCGCAGCCATCA 60.361 55.556 0.00 0.00 40.61 3.07
2813 4039 2.703798 ATTGCACCGCAGCCATCAC 61.704 57.895 0.00 0.00 40.61 3.06
2814 4040 3.848301 TTGCACCGCAGCCATCACT 62.848 57.895 0.00 0.00 40.61 3.41
2815 4041 2.125147 GCACCGCAGCCATCACTA 60.125 61.111 0.00 0.00 0.00 2.74
2816 4042 1.745115 GCACCGCAGCCATCACTAA 60.745 57.895 0.00 0.00 0.00 2.24
2817 4043 1.982073 GCACCGCAGCCATCACTAAC 61.982 60.000 0.00 0.00 0.00 2.34
2818 4044 1.078426 ACCGCAGCCATCACTAACC 60.078 57.895 0.00 0.00 0.00 2.85
2819 4045 1.819632 CCGCAGCCATCACTAACCC 60.820 63.158 0.00 0.00 0.00 4.11
2820 4046 1.078497 CGCAGCCATCACTAACCCA 60.078 57.895 0.00 0.00 0.00 4.51
2821 4047 1.369091 CGCAGCCATCACTAACCCAC 61.369 60.000 0.00 0.00 0.00 4.61
2822 4048 0.322456 GCAGCCATCACTAACCCACA 60.322 55.000 0.00 0.00 0.00 4.17
2823 4049 1.683011 GCAGCCATCACTAACCCACAT 60.683 52.381 0.00 0.00 0.00 3.21
2824 4050 2.421388 GCAGCCATCACTAACCCACATA 60.421 50.000 0.00 0.00 0.00 2.29
2825 4051 3.748668 GCAGCCATCACTAACCCACATAT 60.749 47.826 0.00 0.00 0.00 1.78
2826 4052 4.504864 GCAGCCATCACTAACCCACATATA 60.505 45.833 0.00 0.00 0.00 0.86
2827 4053 5.240891 CAGCCATCACTAACCCACATATAG 58.759 45.833 0.00 0.00 0.00 1.31
2828 4054 4.003648 GCCATCACTAACCCACATATAGC 58.996 47.826 0.00 0.00 0.00 2.97
2829 4055 4.504864 GCCATCACTAACCCACATATAGCA 60.505 45.833 0.00 0.00 0.00 3.49
2830 4056 5.240891 CCATCACTAACCCACATATAGCAG 58.759 45.833 0.00 0.00 0.00 4.24
2831 4057 4.336889 TCACTAACCCACATATAGCAGC 57.663 45.455 0.00 0.00 0.00 5.25
2832 4058 3.709141 TCACTAACCCACATATAGCAGCA 59.291 43.478 0.00 0.00 0.00 4.41
2833 4059 3.809832 CACTAACCCACATATAGCAGCAC 59.190 47.826 0.00 0.00 0.00 4.40
2834 4060 2.348411 AACCCACATATAGCAGCACC 57.652 50.000 0.00 0.00 0.00 5.01
2835 4061 0.474184 ACCCACATATAGCAGCACCC 59.526 55.000 0.00 0.00 0.00 4.61
2836 4062 0.250901 CCCACATATAGCAGCACCCC 60.251 60.000 0.00 0.00 0.00 4.95
2837 4063 0.473755 CCACATATAGCAGCACCCCA 59.526 55.000 0.00 0.00 0.00 4.96
2838 4064 1.133823 CCACATATAGCAGCACCCCAA 60.134 52.381 0.00 0.00 0.00 4.12
2839 4065 1.949525 CACATATAGCAGCACCCCAAC 59.050 52.381 0.00 0.00 0.00 3.77
2840 4066 1.133792 ACATATAGCAGCACCCCAACC 60.134 52.381 0.00 0.00 0.00 3.77
2841 4067 0.478507 ATATAGCAGCACCCCAACCC 59.521 55.000 0.00 0.00 0.00 4.11
2842 4068 0.623324 TATAGCAGCACCCCAACCCT 60.623 55.000 0.00 0.00 0.00 4.34
2843 4069 0.623324 ATAGCAGCACCCCAACCCTA 60.623 55.000 0.00 0.00 0.00 3.53
2844 4070 0.842905 TAGCAGCACCCCAACCCTAA 60.843 55.000 0.00 0.00 0.00 2.69
2845 4071 1.678970 GCAGCACCCCAACCCTAAG 60.679 63.158 0.00 0.00 0.00 2.18
2846 4072 1.767692 CAGCACCCCAACCCTAAGT 59.232 57.895 0.00 0.00 0.00 2.24
2847 4073 0.112412 CAGCACCCCAACCCTAAGTT 59.888 55.000 0.00 0.00 40.16 2.66
2848 4074 0.857675 AGCACCCCAACCCTAAGTTT 59.142 50.000 0.00 0.00 36.18 2.66
2849 4075 2.067386 AGCACCCCAACCCTAAGTTTA 58.933 47.619 0.00 0.00 36.18 2.01
2850 4076 2.165167 GCACCCCAACCCTAAGTTTAC 58.835 52.381 0.00 0.00 36.18 2.01
2851 4077 2.799017 CACCCCAACCCTAAGTTTACC 58.201 52.381 0.00 0.00 36.18 2.85
2852 4078 1.712510 ACCCCAACCCTAAGTTTACCC 59.287 52.381 0.00 0.00 36.18 3.69
2853 4079 1.006281 CCCCAACCCTAAGTTTACCCC 59.994 57.143 0.00 0.00 36.18 4.95
2854 4080 1.711942 CCCAACCCTAAGTTTACCCCA 59.288 52.381 0.00 0.00 36.18 4.96
2855 4081 2.110365 CCCAACCCTAAGTTTACCCCAA 59.890 50.000 0.00 0.00 36.18 4.12
2856 4082 3.159472 CCAACCCTAAGTTTACCCCAAC 58.841 50.000 0.00 0.00 36.18 3.77
2857 4083 3.159472 CAACCCTAAGTTTACCCCAACC 58.841 50.000 0.00 0.00 36.18 3.77
2858 4084 2.430963 ACCCTAAGTTTACCCCAACCA 58.569 47.619 0.00 0.00 0.00 3.67
2859 4085 2.377531 ACCCTAAGTTTACCCCAACCAG 59.622 50.000 0.00 0.00 0.00 4.00
2860 4086 2.291346 CCCTAAGTTTACCCCAACCAGG 60.291 54.545 0.00 0.00 32.58 4.45
2861 4087 2.443416 CTAAGTTTACCCCAACCAGGC 58.557 52.381 0.00 0.00 35.39 4.85
2862 4088 0.558712 AAGTTTACCCCAACCAGGCA 59.441 50.000 0.00 0.00 35.39 4.75
2863 4089 0.178973 AGTTTACCCCAACCAGGCAC 60.179 55.000 0.00 0.00 35.39 5.01
2864 4090 0.178973 GTTTACCCCAACCAGGCACT 60.179 55.000 0.00 0.00 43.88 4.40
2865 4091 0.558712 TTTACCCCAACCAGGCACTT 59.441 50.000 0.00 0.00 34.60 3.16
2866 4092 0.111639 TTACCCCAACCAGGCACTTC 59.888 55.000 0.00 0.00 34.60 3.01
2867 4093 1.785353 TACCCCAACCAGGCACTTCC 61.785 60.000 0.00 0.00 34.60 3.46
2868 4094 2.520458 CCCAACCAGGCACTTCCA 59.480 61.111 0.00 0.00 34.60 3.53
2869 4095 1.152567 CCCAACCAGGCACTTCCAA 60.153 57.895 0.00 0.00 34.60 3.53
2870 4096 1.181098 CCCAACCAGGCACTTCCAAG 61.181 60.000 0.00 0.00 34.60 3.61
2871 4097 1.181098 CCAACCAGGCACTTCCAAGG 61.181 60.000 0.00 0.00 34.60 3.61
2872 4098 0.178992 CAACCAGGCACTTCCAAGGA 60.179 55.000 0.00 0.00 34.60 3.36
2873 4099 0.111253 AACCAGGCACTTCCAAGGAG 59.889 55.000 0.00 0.00 34.60 3.69
2874 4100 1.062488 ACCAGGCACTTCCAAGGAGT 61.062 55.000 0.00 0.00 34.60 3.85
2875 4101 0.984230 CCAGGCACTTCCAAGGAGTA 59.016 55.000 0.00 0.00 34.60 2.59
2876 4102 1.561542 CCAGGCACTTCCAAGGAGTAT 59.438 52.381 0.00 0.00 34.60 2.12
2877 4103 2.420687 CCAGGCACTTCCAAGGAGTATC 60.421 54.545 0.00 0.00 34.60 2.24
2878 4104 2.237143 CAGGCACTTCCAAGGAGTATCA 59.763 50.000 0.00 0.00 34.60 2.15
2879 4105 2.237392 AGGCACTTCCAAGGAGTATCAC 59.763 50.000 0.00 0.00 34.65 3.06
2880 4106 2.237392 GGCACTTCCAAGGAGTATCACT 59.763 50.000 0.00 0.00 32.78 3.41
2881 4107 3.265791 GCACTTCCAAGGAGTATCACTG 58.734 50.000 0.00 0.00 36.25 3.66
2882 4108 3.055819 GCACTTCCAAGGAGTATCACTGA 60.056 47.826 0.00 0.00 36.25 3.41
2883 4109 4.563580 GCACTTCCAAGGAGTATCACTGAA 60.564 45.833 0.00 0.00 36.25 3.02
2884 4110 5.551233 CACTTCCAAGGAGTATCACTGAAA 58.449 41.667 0.00 0.00 36.25 2.69
2885 4111 5.641209 CACTTCCAAGGAGTATCACTGAAAG 59.359 44.000 0.00 0.00 42.29 2.62
2886 4112 5.544176 ACTTCCAAGGAGTATCACTGAAAGA 59.456 40.000 0.00 0.00 37.43 2.52
2887 4113 5.667539 TCCAAGGAGTATCACTGAAAGAG 57.332 43.478 0.00 0.00 37.43 2.85
2888 4114 4.081420 TCCAAGGAGTATCACTGAAAGAGC 60.081 45.833 0.00 0.00 37.43 4.09
2889 4115 4.323028 CCAAGGAGTATCACTGAAAGAGCA 60.323 45.833 0.00 0.00 37.43 4.26
2890 4116 5.426504 CAAGGAGTATCACTGAAAGAGCAT 58.573 41.667 0.00 0.00 37.43 3.79
2891 4117 5.021033 AGGAGTATCACTGAAAGAGCATG 57.979 43.478 0.00 0.00 37.43 4.06
2892 4118 4.125703 GGAGTATCACTGAAAGAGCATGG 58.874 47.826 0.00 0.00 37.43 3.66
2893 4119 4.383552 GGAGTATCACTGAAAGAGCATGGT 60.384 45.833 0.00 0.00 37.43 3.55
2894 4120 4.511527 AGTATCACTGAAAGAGCATGGTG 58.488 43.478 0.00 0.00 37.43 4.17
2895 4121 3.708403 ATCACTGAAAGAGCATGGTGA 57.292 42.857 0.00 0.38 37.43 4.02
2896 4122 2.771089 TCACTGAAAGAGCATGGTGAC 58.229 47.619 0.00 0.00 37.43 3.67
2897 4123 1.808945 CACTGAAAGAGCATGGTGACC 59.191 52.381 0.00 0.00 37.43 4.02
2898 4124 1.271597 ACTGAAAGAGCATGGTGACCC 60.272 52.381 0.00 0.00 37.43 4.46
2899 4125 0.038166 TGAAAGAGCATGGTGACCCC 59.962 55.000 0.00 0.00 0.00 4.95
2900 4126 4.532438 CTGAAAGAGCATGGTGACCCCA 62.532 54.545 0.00 0.00 42.92 4.96
2907 4133 2.842801 TGGTGACCCCATGTGTGG 59.157 61.111 0.00 0.00 45.61 4.17
2908 4134 2.081787 TGGTGACCCCATGTGTGGT 61.082 57.895 0.00 0.00 44.48 4.16
2909 4135 1.152830 GGTGACCCCATGTGTGGTT 59.847 57.895 0.00 0.00 44.48 3.67
2910 4136 0.469144 GGTGACCCCATGTGTGGTTT 60.469 55.000 0.00 0.00 44.48 3.27
2911 4137 1.408969 GTGACCCCATGTGTGGTTTT 58.591 50.000 0.90 0.00 44.48 2.43
2912 4138 1.068434 GTGACCCCATGTGTGGTTTTG 59.932 52.381 0.90 0.00 44.48 2.44
2913 4139 1.063642 TGACCCCATGTGTGGTTTTGA 60.064 47.619 0.90 0.00 44.48 2.69
2914 4140 2.247358 GACCCCATGTGTGGTTTTGAT 58.753 47.619 0.90 0.00 44.48 2.57
2915 4141 3.181428 TGACCCCATGTGTGGTTTTGATA 60.181 43.478 0.90 0.00 44.48 2.15
2916 4142 3.829601 GACCCCATGTGTGGTTTTGATAA 59.170 43.478 0.90 0.00 44.48 1.75
2917 4143 4.424842 ACCCCATGTGTGGTTTTGATAAT 58.575 39.130 0.00 0.00 44.48 1.28
2918 4144 4.843516 ACCCCATGTGTGGTTTTGATAATT 59.156 37.500 0.00 0.00 44.48 1.40
2919 4145 5.177326 CCCCATGTGTGGTTTTGATAATTG 58.823 41.667 0.00 0.00 44.48 2.32
2920 4146 5.046735 CCCCATGTGTGGTTTTGATAATTGA 60.047 40.000 0.00 0.00 44.48 2.57
2921 4147 6.352051 CCCCATGTGTGGTTTTGATAATTGAT 60.352 38.462 0.00 0.00 44.48 2.57
2922 4148 6.535865 CCCATGTGTGGTTTTGATAATTGATG 59.464 38.462 0.00 0.00 44.48 3.07
2923 4149 7.321908 CCATGTGTGGTTTTGATAATTGATGA 58.678 34.615 0.00 0.00 40.83 2.92
2924 4150 7.276218 CCATGTGTGGTTTTGATAATTGATGAC 59.724 37.037 0.00 0.00 40.83 3.06
2925 4151 7.282332 TGTGTGGTTTTGATAATTGATGACA 57.718 32.000 0.00 0.00 0.00 3.58
2926 4152 7.894708 TGTGTGGTTTTGATAATTGATGACAT 58.105 30.769 0.00 0.00 0.00 3.06
2927 4153 8.366401 TGTGTGGTTTTGATAATTGATGACATT 58.634 29.630 0.00 0.00 0.00 2.71
2928 4154 8.863049 GTGTGGTTTTGATAATTGATGACATTC 58.137 33.333 0.00 0.00 0.00 2.67
2929 4155 8.805175 TGTGGTTTTGATAATTGATGACATTCT 58.195 29.630 0.00 0.00 0.00 2.40
2930 4156 9.294030 GTGGTTTTGATAATTGATGACATTCTC 57.706 33.333 0.00 0.00 0.00 2.87
2931 4157 9.246670 TGGTTTTGATAATTGATGACATTCTCT 57.753 29.630 0.00 0.00 0.00 3.10
2942 4168 9.775854 ATTGATGACATTCTCTAATAAGGACTG 57.224 33.333 0.00 0.00 0.00 3.51
2943 4169 8.539117 TGATGACATTCTCTAATAAGGACTGA 57.461 34.615 0.00 0.00 0.00 3.41
2944 4170 9.152327 TGATGACATTCTCTAATAAGGACTGAT 57.848 33.333 0.00 0.00 0.00 2.90
2945 4171 9.421806 GATGACATTCTCTAATAAGGACTGATG 57.578 37.037 0.00 0.00 0.00 3.07
2946 4172 7.730084 TGACATTCTCTAATAAGGACTGATGG 58.270 38.462 0.00 0.00 0.00 3.51
2947 4173 7.345653 TGACATTCTCTAATAAGGACTGATGGT 59.654 37.037 0.00 0.00 0.00 3.55
2948 4174 8.095452 ACATTCTCTAATAAGGACTGATGGTT 57.905 34.615 0.00 0.00 0.00 3.67
2949 4175 7.989741 ACATTCTCTAATAAGGACTGATGGTTG 59.010 37.037 0.00 0.00 0.00 3.77
2950 4176 5.918608 TCTCTAATAAGGACTGATGGTTGC 58.081 41.667 0.00 0.00 0.00 4.17
2951 4177 5.036117 TCTAATAAGGACTGATGGTTGCC 57.964 43.478 0.00 0.00 0.00 4.52
2952 4178 4.721776 TCTAATAAGGACTGATGGTTGCCT 59.278 41.667 0.00 0.00 0.00 4.75
2953 4179 4.322057 AATAAGGACTGATGGTTGCCTT 57.678 40.909 0.00 0.00 41.51 4.35
2954 4180 1.915141 AAGGACTGATGGTTGCCTTG 58.085 50.000 0.00 0.00 37.55 3.61
2955 4181 1.067295 AGGACTGATGGTTGCCTTGA 58.933 50.000 0.00 0.00 0.00 3.02
2956 4182 1.004044 AGGACTGATGGTTGCCTTGAG 59.996 52.381 0.00 0.00 0.00 3.02
2957 4183 1.271597 GGACTGATGGTTGCCTTGAGT 60.272 52.381 0.00 0.00 29.01 3.41
2958 4184 2.508526 GACTGATGGTTGCCTTGAGTT 58.491 47.619 0.00 0.00 26.82 3.01
2959 4185 3.559171 GGACTGATGGTTGCCTTGAGTTA 60.559 47.826 0.00 0.00 26.82 2.24
2960 4186 4.265073 GACTGATGGTTGCCTTGAGTTAT 58.735 43.478 0.00 0.00 26.82 1.89
2961 4187 5.428253 GACTGATGGTTGCCTTGAGTTATA 58.572 41.667 0.00 0.00 26.82 0.98
2962 4188 6.006275 ACTGATGGTTGCCTTGAGTTATAT 57.994 37.500 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 55 7.678171 ACACCTAGGTTTGATATCCCAAAATTT 59.322 33.333 13.15 0.00 37.72 1.82
79 82 7.933577 ACAAAACTTCACATGAGAGTAGATTGA 59.066 33.333 0.00 0.00 0.00 2.57
114 117 9.435688 TCTTTTCATCGAGAATACATTTTCTGA 57.564 29.630 0.00 0.00 36.10 3.27
167 172 4.628074 CCTACGATCCGTCCAAACAATAT 58.372 43.478 0.00 0.00 41.54 1.28
168 173 3.738899 GCCTACGATCCGTCCAAACAATA 60.739 47.826 0.00 0.00 41.54 1.90
169 174 2.901249 CCTACGATCCGTCCAAACAAT 58.099 47.619 0.00 0.00 41.54 2.71
198 207 8.836413 GGAAATGTATCCATGTCGAAGAAAATA 58.164 33.333 0.00 0.00 36.33 1.40
354 384 2.280628 CGGAAAATACACTGGAGCTCC 58.719 52.381 26.78 26.78 0.00 4.70
357 387 1.659098 CGACGGAAAATACACTGGAGC 59.341 52.381 0.00 0.00 0.00 4.70
376 407 4.380531 ACATATGAACAGCCTCCATTACG 58.619 43.478 10.38 0.00 0.00 3.18
386 417 2.738846 CAGGCGGATACATATGAACAGC 59.261 50.000 10.38 11.42 0.00 4.40
520 566 2.031245 TGATGTGCGACCAAACATTGAC 60.031 45.455 0.00 0.00 37.15 3.18
613 686 2.111878 AGCTTCGGTTGCACTGCT 59.888 55.556 1.98 0.00 0.00 4.24
614 687 2.253452 CAGCTTCGGTTGCACTGC 59.747 61.111 0.00 0.00 0.00 4.40
615 688 0.882042 AGTCAGCTTCGGTTGCACTG 60.882 55.000 0.00 0.00 0.00 3.66
618 691 0.179059 TCAAGTCAGCTTCGGTTGCA 60.179 50.000 0.00 0.00 31.49 4.08
621 694 1.001406 CCTCTCAAGTCAGCTTCGGTT 59.999 52.381 0.00 0.00 31.49 4.44
623 696 0.108424 CCCTCTCAAGTCAGCTTCGG 60.108 60.000 0.00 0.00 31.49 4.30
827 909 2.875933 CGCTCTAGTTAGTCTAGCTGCT 59.124 50.000 7.57 7.57 44.10 4.24
829 911 4.143200 CGATCGCTCTAGTTAGTCTAGCTG 60.143 50.000 0.26 0.00 44.10 4.24
841 923 1.284408 GAGGCCACGATCGCTCTAG 59.716 63.158 16.60 0.31 0.00 2.43
852 934 1.515521 CCAACTTTCCACGAGGCCAC 61.516 60.000 5.01 0.00 33.74 5.01
900 982 0.098552 TGTTGCAGTGCACGTCTTTG 59.901 50.000 19.58 4.83 38.71 2.77
921 1003 0.106769 TGGTGTGTGTGTGCCAGAAT 60.107 50.000 0.00 0.00 0.00 2.40
989 1100 2.172293 ACTCCTCTCATCTTGGGCAATC 59.828 50.000 0.00 0.00 0.00 2.67
1644 2848 3.384532 GCCACGAGGTCCGGGTTA 61.385 66.667 0.00 0.00 40.86 2.85
1680 2884 2.671177 CCACAGCGCCGTCTTGAAG 61.671 63.158 2.29 0.00 0.00 3.02
2004 3212 7.523219 CAACGCCATTGTTACAGTATTTAGAA 58.477 34.615 0.00 0.00 33.20 2.10
2047 3261 3.799963 CGCACCATTATTCGCTTGTAGTA 59.200 43.478 0.00 0.00 0.00 1.82
2048 3262 2.607635 CGCACCATTATTCGCTTGTAGT 59.392 45.455 0.00 0.00 0.00 2.73
2049 3263 2.863740 TCGCACCATTATTCGCTTGTAG 59.136 45.455 0.00 0.00 0.00 2.74
2186 3401 3.931907 ATGCACTTTGTATCCTAGCCA 57.068 42.857 0.00 0.00 0.00 4.75
2255 3470 3.403936 GCCTTGGGCGATCTATGTT 57.596 52.632 0.00 0.00 39.62 2.71
2284 3499 3.365265 CGCTCTTTGGCCGGCTTT 61.365 61.111 28.56 0.00 0.00 3.51
2319 3534 5.047021 TCTCCAACAACATGGTTTTGTTTCA 60.047 36.000 8.74 0.09 43.16 2.69
2338 3553 3.611674 TCGGCGTTGTGCTCTCCA 61.612 61.111 6.85 0.00 45.43 3.86
2500 3725 1.670406 GCCTATGAGCGGCATCCTG 60.670 63.158 1.45 0.00 46.77 3.86
2519 3744 0.742635 TGCTGTGTTCGTGCTTGACA 60.743 50.000 0.00 0.00 0.00 3.58
2521 3746 1.159713 CCTGCTGTGTTCGTGCTTGA 61.160 55.000 0.00 0.00 0.00 3.02
2795 4021 2.361483 TGATGGCTGCGGTGCAAT 60.361 55.556 0.00 0.00 38.41 3.56
2796 4022 2.462125 TAGTGATGGCTGCGGTGCAA 62.462 55.000 0.00 0.00 38.41 4.08
2797 4023 2.462125 TTAGTGATGGCTGCGGTGCA 62.462 55.000 0.00 0.00 36.92 4.57
2798 4024 1.745115 TTAGTGATGGCTGCGGTGC 60.745 57.895 0.00 0.00 0.00 5.01
2799 4025 1.369091 GGTTAGTGATGGCTGCGGTG 61.369 60.000 0.00 0.00 0.00 4.94
2800 4026 1.078426 GGTTAGTGATGGCTGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
2801 4027 1.819632 GGGTTAGTGATGGCTGCGG 60.820 63.158 0.00 0.00 0.00 5.69
2802 4028 1.078497 TGGGTTAGTGATGGCTGCG 60.078 57.895 0.00 0.00 0.00 5.18
2803 4029 0.322456 TGTGGGTTAGTGATGGCTGC 60.322 55.000 0.00 0.00 0.00 5.25
2804 4030 2.425143 ATGTGGGTTAGTGATGGCTG 57.575 50.000 0.00 0.00 0.00 4.85
2805 4031 4.263068 GCTATATGTGGGTTAGTGATGGCT 60.263 45.833 0.00 0.00 0.00 4.75
2806 4032 4.003648 GCTATATGTGGGTTAGTGATGGC 58.996 47.826 0.00 0.00 0.00 4.40
2807 4033 5.227569 TGCTATATGTGGGTTAGTGATGG 57.772 43.478 0.00 0.00 0.00 3.51
2808 4034 4.692625 GCTGCTATATGTGGGTTAGTGATG 59.307 45.833 0.00 0.00 0.00 3.07
2809 4035 4.347876 TGCTGCTATATGTGGGTTAGTGAT 59.652 41.667 0.00 0.00 0.00 3.06
2810 4036 3.709141 TGCTGCTATATGTGGGTTAGTGA 59.291 43.478 0.00 0.00 0.00 3.41
2811 4037 3.809832 GTGCTGCTATATGTGGGTTAGTG 59.190 47.826 0.00 0.00 0.00 2.74
2812 4038 3.181454 GGTGCTGCTATATGTGGGTTAGT 60.181 47.826 0.00 0.00 0.00 2.24
2813 4039 3.403038 GGTGCTGCTATATGTGGGTTAG 58.597 50.000 0.00 0.00 0.00 2.34
2814 4040 2.105821 GGGTGCTGCTATATGTGGGTTA 59.894 50.000 0.00 0.00 0.00 2.85
2815 4041 1.133792 GGGTGCTGCTATATGTGGGTT 60.134 52.381 0.00 0.00 0.00 4.11
2816 4042 0.474184 GGGTGCTGCTATATGTGGGT 59.526 55.000 0.00 0.00 0.00 4.51
2817 4043 0.250901 GGGGTGCTGCTATATGTGGG 60.251 60.000 0.00 0.00 0.00 4.61
2818 4044 0.473755 TGGGGTGCTGCTATATGTGG 59.526 55.000 0.00 0.00 0.00 4.17
2819 4045 1.949525 GTTGGGGTGCTGCTATATGTG 59.050 52.381 0.00 0.00 0.00 3.21
2820 4046 1.133792 GGTTGGGGTGCTGCTATATGT 60.134 52.381 0.00 0.00 0.00 2.29
2821 4047 1.609208 GGTTGGGGTGCTGCTATATG 58.391 55.000 0.00 0.00 0.00 1.78
2822 4048 0.478507 GGGTTGGGGTGCTGCTATAT 59.521 55.000 0.00 0.00 0.00 0.86
2823 4049 0.623324 AGGGTTGGGGTGCTGCTATA 60.623 55.000 0.00 0.00 0.00 1.31
2824 4050 0.623324 TAGGGTTGGGGTGCTGCTAT 60.623 55.000 0.00 0.00 0.00 2.97
2825 4051 0.842905 TTAGGGTTGGGGTGCTGCTA 60.843 55.000 0.00 0.00 0.00 3.49
2826 4052 2.142292 CTTAGGGTTGGGGTGCTGCT 62.142 60.000 0.00 0.00 0.00 4.24
2827 4053 1.678970 CTTAGGGTTGGGGTGCTGC 60.679 63.158 0.00 0.00 0.00 5.25
2828 4054 0.112412 AACTTAGGGTTGGGGTGCTG 59.888 55.000 0.00 0.00 36.70 4.41
2829 4055 0.857675 AAACTTAGGGTTGGGGTGCT 59.142 50.000 0.00 0.00 38.29 4.40
2830 4056 2.165167 GTAAACTTAGGGTTGGGGTGC 58.835 52.381 0.00 0.00 38.29 5.01
2831 4057 2.555892 GGGTAAACTTAGGGTTGGGGTG 60.556 54.545 0.00 0.00 38.29 4.61
2832 4058 1.712510 GGGTAAACTTAGGGTTGGGGT 59.287 52.381 0.00 0.00 38.29 4.95
2833 4059 1.006281 GGGGTAAACTTAGGGTTGGGG 59.994 57.143 0.00 0.00 38.29 4.96
2834 4060 1.711942 TGGGGTAAACTTAGGGTTGGG 59.288 52.381 0.00 0.00 38.29 4.12
2835 4061 3.159472 GTTGGGGTAAACTTAGGGTTGG 58.841 50.000 0.00 0.00 38.29 3.77
2836 4062 3.159472 GGTTGGGGTAAACTTAGGGTTG 58.841 50.000 0.00 0.00 38.29 3.77
2837 4063 2.790585 TGGTTGGGGTAAACTTAGGGTT 59.209 45.455 0.00 0.00 40.28 4.11
2838 4064 2.377531 CTGGTTGGGGTAAACTTAGGGT 59.622 50.000 0.00 0.00 0.00 4.34
2839 4065 2.291346 CCTGGTTGGGGTAAACTTAGGG 60.291 54.545 0.00 0.00 34.02 3.53
2840 4066 2.882643 GCCTGGTTGGGGTAAACTTAGG 60.883 54.545 0.00 0.00 37.39 2.69
2841 4067 2.224917 TGCCTGGTTGGGGTAAACTTAG 60.225 50.000 0.00 0.00 36.00 2.18
2842 4068 1.781529 TGCCTGGTTGGGGTAAACTTA 59.218 47.619 0.00 0.00 36.00 2.24
2843 4069 0.558712 TGCCTGGTTGGGGTAAACTT 59.441 50.000 0.00 0.00 36.00 2.66
2844 4070 0.178973 GTGCCTGGTTGGGGTAAACT 60.179 55.000 0.00 0.00 36.00 2.66
2845 4071 0.178973 AGTGCCTGGTTGGGGTAAAC 60.179 55.000 0.00 0.00 36.00 2.01
2846 4072 0.558712 AAGTGCCTGGTTGGGGTAAA 59.441 50.000 0.00 0.00 36.00 2.01
2847 4073 0.111639 GAAGTGCCTGGTTGGGGTAA 59.888 55.000 0.00 0.00 36.00 2.85
2848 4074 1.765074 GAAGTGCCTGGTTGGGGTA 59.235 57.895 0.00 0.00 36.00 3.69
2849 4075 2.520968 GAAGTGCCTGGTTGGGGT 59.479 61.111 0.00 0.00 36.00 4.95
2850 4076 2.283173 GGAAGTGCCTGGTTGGGG 60.283 66.667 0.00 0.00 36.00 4.96
2851 4077 1.152567 TTGGAAGTGCCTGGTTGGG 60.153 57.895 0.00 0.00 37.63 4.12
2852 4078 1.181098 CCTTGGAAGTGCCTGGTTGG 61.181 60.000 0.00 0.00 37.63 3.77
2853 4079 0.178992 TCCTTGGAAGTGCCTGGTTG 60.179 55.000 0.00 0.00 37.63 3.77
2854 4080 0.111253 CTCCTTGGAAGTGCCTGGTT 59.889 55.000 0.00 0.00 37.63 3.67
2855 4081 1.062488 ACTCCTTGGAAGTGCCTGGT 61.062 55.000 0.00 0.00 37.63 4.00
2856 4082 0.984230 TACTCCTTGGAAGTGCCTGG 59.016 55.000 0.00 0.00 37.63 4.45
2857 4083 2.237143 TGATACTCCTTGGAAGTGCCTG 59.763 50.000 0.00 0.00 37.63 4.85
2858 4084 2.237392 GTGATACTCCTTGGAAGTGCCT 59.763 50.000 0.00 0.00 37.63 4.75
2859 4085 2.237392 AGTGATACTCCTTGGAAGTGCC 59.763 50.000 0.00 0.00 37.10 5.01
2860 4086 3.055819 TCAGTGATACTCCTTGGAAGTGC 60.056 47.826 0.00 0.00 0.00 4.40
2861 4087 4.808414 TCAGTGATACTCCTTGGAAGTG 57.192 45.455 0.00 0.00 0.00 3.16
2862 4088 5.544176 TCTTTCAGTGATACTCCTTGGAAGT 59.456 40.000 0.00 0.00 0.00 3.01
2863 4089 6.042638 TCTTTCAGTGATACTCCTTGGAAG 57.957 41.667 0.00 0.00 0.00 3.46
2864 4090 5.569630 GCTCTTTCAGTGATACTCCTTGGAA 60.570 44.000 0.00 0.00 0.00 3.53
2865 4091 4.081420 GCTCTTTCAGTGATACTCCTTGGA 60.081 45.833 0.00 0.00 0.00 3.53
2866 4092 4.187694 GCTCTTTCAGTGATACTCCTTGG 58.812 47.826 0.00 0.00 0.00 3.61
2867 4093 4.825422 TGCTCTTTCAGTGATACTCCTTG 58.175 43.478 0.00 0.00 0.00 3.61
2868 4094 5.426504 CATGCTCTTTCAGTGATACTCCTT 58.573 41.667 0.00 0.00 0.00 3.36
2869 4095 4.141756 CCATGCTCTTTCAGTGATACTCCT 60.142 45.833 0.00 0.00 0.00 3.69
2870 4096 4.125703 CCATGCTCTTTCAGTGATACTCC 58.874 47.826 0.00 0.00 0.00 3.85
2871 4097 4.569966 CACCATGCTCTTTCAGTGATACTC 59.430 45.833 0.00 0.00 0.00 2.59
2872 4098 4.223700 TCACCATGCTCTTTCAGTGATACT 59.776 41.667 0.00 0.00 29.75 2.12
2873 4099 4.331168 GTCACCATGCTCTTTCAGTGATAC 59.669 45.833 0.00 0.00 36.70 2.24
2874 4100 4.507710 GTCACCATGCTCTTTCAGTGATA 58.492 43.478 0.00 0.00 36.70 2.15
2875 4101 3.341823 GTCACCATGCTCTTTCAGTGAT 58.658 45.455 0.00 0.00 36.70 3.06
2876 4102 2.550855 GGTCACCATGCTCTTTCAGTGA 60.551 50.000 0.00 0.00 32.15 3.41
2877 4103 1.808945 GGTCACCATGCTCTTTCAGTG 59.191 52.381 0.00 0.00 0.00 3.66
2878 4104 1.271597 GGGTCACCATGCTCTTTCAGT 60.272 52.381 0.00 0.00 36.50 3.41
2879 4105 1.457346 GGGTCACCATGCTCTTTCAG 58.543 55.000 0.00 0.00 36.50 3.02
2880 4106 0.038166 GGGGTCACCATGCTCTTTCA 59.962 55.000 0.00 0.00 39.85 2.69
2881 4107 0.038166 TGGGGTCACCATGCTCTTTC 59.962 55.000 0.00 0.00 46.80 2.62
2882 4108 2.163454 TGGGGTCACCATGCTCTTT 58.837 52.632 0.00 0.00 46.80 2.52
2883 4109 3.920817 TGGGGTCACCATGCTCTT 58.079 55.556 0.00 0.00 46.80 2.85
2899 4125 7.813627 TGTCATCAATTATCAAAACCACACATG 59.186 33.333 0.00 0.00 0.00 3.21
2900 4126 7.894708 TGTCATCAATTATCAAAACCACACAT 58.105 30.769 0.00 0.00 0.00 3.21
2901 4127 7.282332 TGTCATCAATTATCAAAACCACACA 57.718 32.000 0.00 0.00 0.00 3.72
2902 4128 8.761575 AATGTCATCAATTATCAAAACCACAC 57.238 30.769 0.00 0.00 0.00 3.82
2903 4129 8.805175 AGAATGTCATCAATTATCAAAACCACA 58.195 29.630 0.00 0.00 0.00 4.17
2904 4130 9.294030 GAGAATGTCATCAATTATCAAAACCAC 57.706 33.333 0.00 0.00 0.00 4.16
2905 4131 9.246670 AGAGAATGTCATCAATTATCAAAACCA 57.753 29.630 0.00 0.00 0.00 3.67
2916 4142 9.775854 CAGTCCTTATTAGAGAATGTCATCAAT 57.224 33.333 0.00 0.00 0.00 2.57
2917 4143 8.981659 TCAGTCCTTATTAGAGAATGTCATCAA 58.018 33.333 0.00 0.00 0.00 2.57
2918 4144 8.539117 TCAGTCCTTATTAGAGAATGTCATCA 57.461 34.615 0.00 0.00 0.00 3.07
2919 4145 9.421806 CATCAGTCCTTATTAGAGAATGTCATC 57.578 37.037 0.00 0.00 0.00 2.92
2920 4146 8.373981 CCATCAGTCCTTATTAGAGAATGTCAT 58.626 37.037 0.00 0.00 0.00 3.06
2921 4147 7.345653 ACCATCAGTCCTTATTAGAGAATGTCA 59.654 37.037 0.00 0.00 0.00 3.58
2922 4148 7.731054 ACCATCAGTCCTTATTAGAGAATGTC 58.269 38.462 0.00 0.00 0.00 3.06
2923 4149 7.682787 ACCATCAGTCCTTATTAGAGAATGT 57.317 36.000 0.00 0.00 0.00 2.71
2924 4150 7.041508 GCAACCATCAGTCCTTATTAGAGAATG 60.042 40.741 0.00 0.00 0.00 2.67
2925 4151 6.995091 GCAACCATCAGTCCTTATTAGAGAAT 59.005 38.462 0.00 0.00 0.00 2.40
2926 4152 6.349300 GCAACCATCAGTCCTTATTAGAGAA 58.651 40.000 0.00 0.00 0.00 2.87
2927 4153 5.163301 GGCAACCATCAGTCCTTATTAGAGA 60.163 44.000 0.00 0.00 0.00 3.10
2928 4154 5.059833 GGCAACCATCAGTCCTTATTAGAG 58.940 45.833 0.00 0.00 0.00 2.43
2929 4155 4.721776 AGGCAACCATCAGTCCTTATTAGA 59.278 41.667 0.00 0.00 37.17 2.10
2930 4156 5.041191 AGGCAACCATCAGTCCTTATTAG 57.959 43.478 0.00 0.00 37.17 1.73
2931 4157 5.045213 TCAAGGCAACCATCAGTCCTTATTA 60.045 40.000 0.00 0.00 35.55 0.98
2932 4158 4.019174 CAAGGCAACCATCAGTCCTTATT 58.981 43.478 0.00 0.00 35.55 1.40
2933 4159 3.266772 TCAAGGCAACCATCAGTCCTTAT 59.733 43.478 0.00 0.00 35.55 1.73
2934 4160 2.642311 TCAAGGCAACCATCAGTCCTTA 59.358 45.455 0.00 0.00 35.55 2.69
2935 4161 1.425066 TCAAGGCAACCATCAGTCCTT 59.575 47.619 0.00 0.00 37.61 3.36
2936 4162 1.004044 CTCAAGGCAACCATCAGTCCT 59.996 52.381 0.00 0.00 37.17 3.85
2937 4163 1.271597 ACTCAAGGCAACCATCAGTCC 60.272 52.381 0.00 0.00 37.17 3.85
2938 4164 2.191128 ACTCAAGGCAACCATCAGTC 57.809 50.000 0.00 0.00 37.17 3.51
2939 4165 2.664402 AACTCAAGGCAACCATCAGT 57.336 45.000 0.00 0.00 37.17 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.