AutoCloner

Multiple sequence alignment - TraesCS3D01G260100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G260100	chr3D	100.000	3143	0	0	1	3143	362071552	362068410	0.000000e+00	5805.0
1	TraesCS3D01G260100	chr3D	83.740	369	29	8	2185	2527	362042925	362042562	1.410000e-83	320.0
2	TraesCS3D01G260100	chr3D	84.286	280	29	4	1883	2159	362043190	362042923	3.110000e-65	259.0
3	TraesCS3D01G260100	chr3D	88.889	99	4	3	2856	2952	362040347	362040254	7.120000e-22	115.0
4	TraesCS3D01G260100	chr3D	82.828	99	4	7	2939	3036	362035174	362035088	3.360000e-10	76.8
5	TraesCS3D01G260100	chr3D	88.235	51	3	2	2525	2575	362042551	362042504	1.220000e-04	58.4
6	TraesCS3D01G260100	chr3B	89.535	2647	107	49	7	2556	471802144	471799571	0.000000e+00	3197.0
7	TraesCS3D01G260100	chr3B	76.462	718	108	35	1218	1924	37970916	37971583	1.810000e-87	333.0
8	TraesCS3D01G260100	chr3B	94.180	189	5	3	2721	2909	471797250	471797068	1.850000e-72	283.0
9	TraesCS3D01G260100	chr3B	82.407	216	12	13	2914	3127	471796716	471796525	6.970000e-37	165.0
10	TraesCS3D01G260100	chr3A	91.854	2087	75	33	595	2630	482185056	482183014	0.000000e+00	2824.0
11	TraesCS3D01G260100	chr3A	87.084	511	27	15	1	502	482187134	482186654	2.760000e-150	542.0
12	TraesCS3D01G260100	chr3A	85.897	312	12	14	2842	3132	482182722	482182422	1.420000e-78	303.0
13	TraesCS3D01G260100	chr3A	84.483	290	42	3	1595	1881	30997355	30997644	1.850000e-72	283.0
14	TraesCS3D01G260100	chr3A	98.148	54	1	0	2667	2720	482183012	482182959	9.280000e-16	95.3
15	TraesCS3D01G260100	chr1D	83.218	870	91	39	1213	2035	454812949	454813810	0.000000e+00	747.0
16	TraesCS3D01G260100	chr1D	82.723	874	106	31	1202	2038	454493637	454492772	0.000000e+00	736.0
17	TraesCS3D01G260100	chr1B	84.615	780	76	32	1200	1941	625145397	625146170	0.000000e+00	736.0
18	TraesCS3D01G260100	chr1B	84.926	743	77	21	1213	1924	625082781	625083519	0.000000e+00	719.0
19	TraesCS3D01G260100	chr1B	81.576	901	104	45	1195	2046	624971002	624971889	0.000000e+00	688.0
20	TraesCS3D01G260100	chr1A	82.540	882	104	34	1195	2036	548733539	548734410	0.000000e+00	730.0
21	TraesCS3D01G260100	chr1A	82.854	869	96	38	1213	2035	548789517	548790378	0.000000e+00	730.0
22	TraesCS3D01G260100	chr1A	82.454	872	101	34	1213	2046	548772602	548773459	0.000000e+00	715.0
23	TraesCS3D01G260100	chr4B	83.099	852	69	37	1899	2718	89359159	89359967	0.000000e+00	706.0
24	TraesCS3D01G260100	chr4B	88.439	519	47	5	1374	1882	89357989	89358504	5.760000e-172	614.0
25	TraesCS3D01G260100	chr2A	89.504	524	51	3	1374	1894	751920223	751920745	0.000000e+00	660.0
26	TraesCS3D01G260100	chr2A	80.513	857	72	39	1899	2718	751942877	751943675	1.260000e-158	569.0
27	TraesCS3D01G260100	chr5D	86.799	606	37	16	2140	2718	48052499	48051910	1.230000e-178	636.0
28	TraesCS3D01G260100	chr6A	89.135	451	38	9	1374	1818	17776491	17776936	4.580000e-153	551.0
29	TraesCS3D01G260100	chr6A	83.425	181	16	8	2914	3091	17777492	17777661	4.200000e-34	156.0
30	TraesCS3D01G260100	chr6A	78.512	242	31	10	2393	2633	17777166	17777387	4.230000e-29	139.0
31	TraesCS3D01G260100	chr6A	95.745	47	2	0	2620	2666	17777407	17777453	3.360000e-10	76.8
32	TraesCS3D01G260100	chrUn	83.803	284	43	3	1601	1881	270382314	270382031	1.860000e-67	267.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G260100	chr3D	362068410	362071552	3142	True	5805.000	5805	100.000000	1	3143	1	chr3D.!!$R2	3142
1	TraesCS3D01G260100	chr3B	471796525	471802144	5619	True	1215.000	3197	88.707333	7	3127	3	chr3B.!!$R1	3120
2	TraesCS3D01G260100	chr3B	37970916	37971583	667	False	333.000	333	76.462000	1218	1924	1	chr3B.!!$F1	706
3	TraesCS3D01G260100	chr3A	482182422	482187134	4712	True	941.075	2824	90.745750	1	3132	4	chr3A.!!$R1	3131
4	TraesCS3D01G260100	chr1D	454812949	454813810	861	False	747.000	747	83.218000	1213	2035	1	chr1D.!!$F1	822
5	TraesCS3D01G260100	chr1D	454492772	454493637	865	True	736.000	736	82.723000	1202	2038	1	chr1D.!!$R1	836
6	TraesCS3D01G260100	chr1B	625145397	625146170	773	False	736.000	736	84.615000	1200	1941	1	chr1B.!!$F3	741
7	TraesCS3D01G260100	chr1B	625082781	625083519	738	False	719.000	719	84.926000	1213	1924	1	chr1B.!!$F2	711
8	TraesCS3D01G260100	chr1B	624971002	624971889	887	False	688.000	688	81.576000	1195	2046	1	chr1B.!!$F1	851
9	TraesCS3D01G260100	chr1A	548733539	548734410	871	False	730.000	730	82.540000	1195	2036	1	chr1A.!!$F1	841
10	TraesCS3D01G260100	chr1A	548789517	548790378	861	False	730.000	730	82.854000	1213	2035	1	chr1A.!!$F3	822
11	TraesCS3D01G260100	chr1A	548772602	548773459	857	False	715.000	715	82.454000	1213	2046	1	chr1A.!!$F2	833
12	TraesCS3D01G260100	chr4B	89357989	89359967	1978	False	660.000	706	85.769000	1374	2718	2	chr4B.!!$F1	1344
13	TraesCS3D01G260100	chr2A	751920223	751920745	522	False	660.000	660	89.504000	1374	1894	1	chr2A.!!$F1	520
14	TraesCS3D01G260100	chr2A	751942877	751943675	798	False	569.000	569	80.513000	1899	2718	1	chr2A.!!$F2	819
15	TraesCS3D01G260100	chr5D	48051910	48052499	589	True	636.000	636	86.799000	2140	2718	1	chr5D.!!$R1	578
16	TraesCS3D01G260100	chr6A	17776491	17777661	1170	False	230.700	551	86.704250	1374	3091	4	chr6A.!!$F1	1717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
554	2105	0.036306	CCTTAACCAACCCACGAGCT	59.964	55.0	0.0	0.0	0.0	4.09	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2353	4699	2.819422	TCGTCGGTTGAACGATCTAG	57.181	50.0	0.0	0.0	45.47	2.43	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	0.962489	GTCGATCCGGATCATGTCCT	59.038	55.000	36.89	7.50	45.46	3.85
135	160	4.338879	AGAATTTTCCTGTGGATGGTGAG	58.661	43.478	0.00	0.00	0.00	3.51
156	181	4.603946	GTAGATGACCGGCCGCCC	62.604	72.222	22.85	14.13	0.00	6.13
190	215	3.374762	CCAGAAATAGGGTCCTCTCCTCT	60.375	52.174	0.00	0.00	35.92	3.69
275	308	3.304659	CGCATAACATAAGCCCAATCCAC	60.305	47.826	0.00	0.00	0.00	4.02
276	309	3.891366	GCATAACATAAGCCCAATCCACT	59.109	43.478	0.00	0.00	0.00	4.00
277	310	4.342092	GCATAACATAAGCCCAATCCACTT	59.658	41.667	0.00	0.00	0.00	3.16
278	311	5.163416	GCATAACATAAGCCCAATCCACTTT	60.163	40.000	0.00	0.00	0.00	2.66
279	312	6.630188	GCATAACATAAGCCCAATCCACTTTT	60.630	38.462	0.00	0.00	0.00	2.27
280	313	5.823861	AACATAAGCCCAATCCACTTTTT	57.176	34.783	0.00	0.00	0.00	1.94
344	377	1.308069	CCGCCACAAACCTCATCTGG	61.308	60.000	0.00	0.00	0.00	3.86
373	406	1.342174	ACACTCCAAAGCAAAGCCATG	59.658	47.619	0.00	0.00	0.00	3.66
474	507	3.308530	GCAACAAGAACCATCTTTTCCG	58.691	45.455	0.00	0.00	43.43	4.30
514	2065	7.873719	ACGATCTATCTATCCATCTACCTTG	57.126	40.000	0.00	0.00	0.00	3.61
525	2076	5.649265	TCCATCTACCTTGATCATCTAGCT	58.351	41.667	0.00	0.00	0.00	3.32
547	2098	4.995624	ATAGATAGCCCTTAACCAACCC	57.004	45.455	0.00	0.00	0.00	4.11
548	2099	2.568979	AGATAGCCCTTAACCAACCCA	58.431	47.619	0.00	0.00	0.00	4.51
549	2100	2.241430	AGATAGCCCTTAACCAACCCAC	59.759	50.000	0.00	0.00	0.00	4.61
550	2101	0.325602	TAGCCCTTAACCAACCCACG	59.674	55.000	0.00	0.00	0.00	4.94
551	2102	1.073548	GCCCTTAACCAACCCACGA	59.926	57.895	0.00	0.00	0.00	4.35
552	2103	0.958876	GCCCTTAACCAACCCACGAG	60.959	60.000	0.00	0.00	0.00	4.18
553	2104	0.958876	CCCTTAACCAACCCACGAGC	60.959	60.000	0.00	0.00	0.00	5.03
554	2105	0.036306	CCTTAACCAACCCACGAGCT	59.964	55.000	0.00	0.00	0.00	4.09
555	2106	1.544759	CCTTAACCAACCCACGAGCTT	60.545	52.381	0.00	0.00	0.00	3.74
556	2107	2.227194	CTTAACCAACCCACGAGCTTT	58.773	47.619	0.00	0.00	0.00	3.51
557	2108	1.886886	TAACCAACCCACGAGCTTTC	58.113	50.000	0.00	0.00	0.00	2.62
558	2109	0.182775	AACCAACCCACGAGCTTTCT	59.817	50.000	0.00	0.00	0.00	2.52
559	2110	0.182775	ACCAACCCACGAGCTTTCTT	59.817	50.000	0.00	0.00	0.00	2.52
560	2111	1.318576	CCAACCCACGAGCTTTCTTT	58.681	50.000	0.00	0.00	0.00	2.52
561	2112	1.681264	CCAACCCACGAGCTTTCTTTT	59.319	47.619	0.00	0.00	0.00	2.27
562	2113	2.100749	CCAACCCACGAGCTTTCTTTTT	59.899	45.455	0.00	0.00	0.00	1.94
659	2235	2.357034	CACGGGGGTGACGTCAAG	60.357	66.667	21.95	11.71	43.58	3.02
663	2239	2.112297	GGGGTGACGTCAAGGCAA	59.888	61.111	21.95	0.00	41.33	4.52
674	2251	1.748493	GTCAAGGCAAAGTCCAACACA	59.252	47.619	0.00	0.00	0.00	3.72
675	2252	2.023673	TCAAGGCAAAGTCCAACACAG	58.976	47.619	0.00	0.00	0.00	3.66
676	2253	0.746659	AAGGCAAAGTCCAACACAGC	59.253	50.000	0.00	0.00	0.00	4.40
819	2405	3.950794	ATGGCAGTGGCACCGTACG	62.951	63.158	23.12	8.69	41.84	3.67
906	2501	2.439701	TCCCCTCAGCGTCCTACG	60.440	66.667	0.00	0.00	45.88	3.51
966	2564	0.807667	GACAGCCATACTCCACAGCG	60.808	60.000	0.00	0.00	0.00	5.18
967	2565	1.522355	CAGCCATACTCCACAGCGG	60.522	63.158	0.00	0.00	0.00	5.52
968	2566	1.685765	AGCCATACTCCACAGCGGA	60.686	57.895	0.00	0.00	43.61	5.54
1914	4212	2.159184	CGAGGACAGCAAGCTCTTCATA	60.159	50.000	0.00	0.00	0.00	2.15
1947	4245	4.335647	CCGAGCACCAACAGCCCT	62.336	66.667	0.00	0.00	0.00	5.19
2379	4736	2.030540	TCGTTCAACCGACGAAGAAGAT	60.031	45.455	0.00	0.00	45.45	2.40
2502	4956	4.428615	TTCTTGCGCCTTTTTATACACC	57.571	40.909	4.18	0.00	0.00	4.16
2506	4960	4.857509	TGCGCCTTTTTATACACCTTTT	57.142	36.364	4.18	0.00	0.00	2.27
2613	7229	3.782244	GAGAAGCGGTGCAGTGCG	61.782	66.667	11.20	0.00	35.87	5.34
2627	7276	0.324275	AGTGCGGGGCCAATGTTATT	60.324	50.000	4.39	0.00	0.00	1.40
2633	7282	1.194218	GGGCCAATGTTATTGCAGGT	58.806	50.000	4.39	0.00	0.00	4.00
2665	7314	3.542676	CCCATGGCCGCATGCATT	61.543	61.111	19.57	0.00	43.89	3.56
2680	7329	2.934277	CATTGCATGCACACGCTAC	58.066	52.632	22.58	0.00	39.64	3.58
2748	7442	2.202878	GCTCGCCATCGCCAGTAA	60.203	61.111	0.00	0.00	35.26	2.24
2754	7448	1.202371	CGCCATCGCCAGTAAGTAGAA	60.202	52.381	0.00	0.00	0.00	2.10
2765	7459	7.064609	TCGCCAGTAAGTAGAAAAGATGAAATG	59.935	37.037	0.00	0.00	0.00	2.32
2779	7477	9.771534	AAAAGATGAAATGCTACTAGTAGATCC	57.228	33.333	30.09	14.93	35.21	3.36
2838	7537	0.247814	GCATTCTGTTCATCACGCCG	60.248	55.000	0.00	0.00	0.00	6.46
2840	7604	0.744414	ATTCTGTTCATCACGCCGGG	60.744	55.000	2.18	0.00	0.00	5.73
2909	7680	0.392595	GGTGGGTGGTTGCTAGCTAC	60.393	60.000	19.40	19.40	0.00	3.58
2911	7682	0.902531	TGGGTGGTTGCTAGCTACTC	59.097	55.000	24.97	18.32	0.00	2.59
2912	7683	0.179108	GGGTGGTTGCTAGCTACTCG	60.179	60.000	24.97	0.00	0.00	4.18
2955	8073	0.941542	GTTGCACGCCTACTTGTTGA	59.058	50.000	0.00	0.00	0.00	3.18
3025	8143	1.606668	ACACATTGCCGTCAATTTCGT	59.393	42.857	0.00	0.00	40.74	3.85
3027	8145	3.160545	CACATTGCCGTCAATTTCGTAC	58.839	45.455	0.00	0.00	40.74	3.67
3032	8150	4.700268	TGCCGTCAATTTCGTACTACTA	57.300	40.909	0.00	0.00	0.00	1.82
3033	8151	4.665212	TGCCGTCAATTTCGTACTACTAG	58.335	43.478	0.00	0.00	0.00	2.57
3037	8155	7.226523	TGCCGTCAATTTCGTACTACTAGTATA	59.773	37.037	2.33	0.00	32.65	1.47
3038	8156	7.743838	GCCGTCAATTTCGTACTACTAGTATAG	59.256	40.741	2.33	0.00	46.50	1.31
3063	8181	3.953300	TGGTTTTGCCAGCTTGCT	58.047	50.000	11.53	0.00	43.61	3.91
3073	8194	0.820891	CCAGCTTGCTGTTGTGACCT	60.821	55.000	19.49	0.00	0.00	3.85
3110	8233	2.089980	CTCAGGGTGAGGCAGATTTTG	58.910	52.381	0.00	0.00	40.71	2.44
3132	8255	1.226974	GCCGCGCTCATCTACTCAA	60.227	57.895	5.56	0.00	0.00	3.02
3133	8256	1.211818	GCCGCGCTCATCTACTCAAG	61.212	60.000	5.56	0.00	0.00	3.02
3134	8257	0.101399	CCGCGCTCATCTACTCAAGT	59.899	55.000	5.56	0.00	0.00	3.16
3135	8258	1.195347	CGCGCTCATCTACTCAAGTG	58.805	55.000	5.56	0.00	0.00	3.16
3136	8259	1.202188	CGCGCTCATCTACTCAAGTGA	60.202	52.381	5.56	0.00	0.00	3.41
3137	8260	2.542618	CGCGCTCATCTACTCAAGTGAT	60.543	50.000	5.56	0.00	0.00	3.06
3138	8261	3.049206	GCGCTCATCTACTCAAGTGATC	58.951	50.000	0.00	0.00	0.00	2.92
3139	8262	3.295785	CGCTCATCTACTCAAGTGATCG	58.704	50.000	0.00	0.00	0.00	3.69
3140	8263	3.637432	GCTCATCTACTCAAGTGATCGG	58.363	50.000	0.00	0.00	0.00	4.18
3141	8264	3.067461	GCTCATCTACTCAAGTGATCGGT	59.933	47.826	0.00	0.00	0.00	4.69
3142	8265	4.605968	CTCATCTACTCAAGTGATCGGTG	58.394	47.826	0.00	0.00	0.00	4.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	0.960286	TGTCCGTCCATACGTGACAA	59.040	50.000	15.09	4.78	46.56	3.18
114	130	3.445096	CCTCACCATCCACAGGAAAATTC	59.555	47.826	0.00	0.00	34.34	2.17
135	160	1.520787	CGGCCGGTCATCTACAACC	60.521	63.158	20.10	0.00	0.00	3.77
156	181	5.775195	ACCCTATTTCTGGAAGTTTTTGGAG	59.225	40.000	0.00	0.00	33.76	3.86
190	215	1.202348	CGCAGTGTGACATGGACTAGA	59.798	52.381	0.00	0.00	0.00	2.43
288	321	1.204704	GCAAGTGGATTGGGCTTTACC	59.795	52.381	0.00	0.00	39.47	2.85
289	322	1.135402	CGCAAGTGGATTGGGCTTTAC	60.135	52.381	0.00	0.00	43.85	2.01
290	323	1.173043	CGCAAGTGGATTGGGCTTTA	58.827	50.000	0.00	0.00	43.85	1.85
291	324	1.966762	CGCAAGTGGATTGGGCTTT	59.033	52.632	0.00	0.00	43.85	3.51
292	325	3.685435	CGCAAGTGGATTGGGCTT	58.315	55.556	0.00	0.00	43.85	4.35
344	377	2.693074	TGCTTTGGAGTGTCCCTTTTTC	59.307	45.455	0.00	0.00	35.03	2.29
373	406	4.500035	CGCCTGATACCTTCTCCTTTCTAC	60.500	50.000	0.00	0.00	0.00	2.59
442	475	0.804364	TCTTGTTGCGGATGATGTGC	59.196	50.000	0.00	0.00	0.00	4.57
525	2076	5.308759	GTGGGTTGGTTAAGGGCTATCTATA	59.691	44.000	0.00	0.00	0.00	1.31
534	2085	0.958876	GCTCGTGGGTTGGTTAAGGG	60.959	60.000	0.00	0.00	0.00	3.95
535	2086	0.036306	AGCTCGTGGGTTGGTTAAGG	59.964	55.000	0.00	0.00	0.00	2.69
536	2087	1.892209	AAGCTCGTGGGTTGGTTAAG	58.108	50.000	0.00	0.00	34.04	1.85
537	2088	2.158726	AGAAAGCTCGTGGGTTGGTTAA	60.159	45.455	0.00	0.00	35.65	2.01
538	2089	1.418637	AGAAAGCTCGTGGGTTGGTTA	59.581	47.619	0.00	0.00	35.65	2.85
539	2090	0.182775	AGAAAGCTCGTGGGTTGGTT	59.817	50.000	0.00	0.00	35.65	3.67
540	2091	0.182775	AAGAAAGCTCGTGGGTTGGT	59.817	50.000	0.00	0.00	35.65	3.67
541	2092	1.318576	AAAGAAAGCTCGTGGGTTGG	58.681	50.000	0.00	0.00	35.65	3.77
542	2093	3.436700	AAAAAGAAAGCTCGTGGGTTG	57.563	42.857	0.00	0.00	35.65	3.77
560	2111	2.503382	GGTTGGCTCCCCGCAAAAA	61.503	57.895	0.00	0.00	41.67	1.94
561	2112	2.915137	GGTTGGCTCCCCGCAAAA	60.915	61.111	0.00	0.00	41.67	2.44
562	2113	4.986708	GGGTTGGCTCCCCGCAAA	62.987	66.667	7.01	0.00	41.54	3.68
567	2118	4.410400	CTCGTGGGTTGGCTCCCC	62.410	72.222	13.93	9.90	46.48	4.81
569	2120	4.021925	AGCTCGTGGGTTGGCTCC	62.022	66.667	0.00	0.00	0.00	4.70
659	2235	0.031178	CTGCTGTGTTGGACTTTGCC	59.969	55.000	0.00	0.00	0.00	4.52
663	2239	1.450531	GCTGCTGCTGTGTTGGACTT	61.451	55.000	8.53	0.00	36.03	3.01
674	2251	4.500887	CCATATAAAAATGCTGCTGCTGCT	60.501	41.667	27.67	12.94	40.48	4.24
675	2252	3.739300	CCATATAAAAATGCTGCTGCTGC	59.261	43.478	22.51	22.51	40.48	5.25
676	2253	4.940463	ACCATATAAAAATGCTGCTGCTG	58.060	39.130	17.00	0.77	40.48	4.41
819	2405	0.107897	TGTCGTGTATGGCATGGGTC	60.108	55.000	10.98	0.00	34.91	4.46
906	2501	7.559486	TGATGCTATGATGGGTAGTATCAATC	58.441	38.462	10.21	0.00	43.52	2.67
966	2564	2.510238	CACTGGTAGCGCTGCTCC	60.510	66.667	24.82	20.49	40.44	4.70
967	2565	1.807573	GACACTGGTAGCGCTGCTC	60.808	63.158	24.82	15.17	40.44	4.26
968	2566	2.262915	GACACTGGTAGCGCTGCT	59.737	61.111	24.82	4.52	43.41	4.24
969	2567	3.181967	CGACACTGGTAGCGCTGC	61.182	66.667	22.90	20.34	0.00	5.25
970	2568	3.181967	GCGACACTGGTAGCGCTG	61.182	66.667	22.90	5.37	45.41	5.18
977	2575	3.980989	TAACGGCGCGACACTGGT	61.981	61.111	14.85	0.00	0.00	4.00
1896	3565	3.118811	AGTCTATGAAGAGCTTGCTGTCC	60.119	47.826	0.00	0.00	30.45	4.02
2353	4699	2.819422	TCGTCGGTTGAACGATCTAG	57.181	50.000	0.00	0.00	45.47	2.43
2502	4956	7.995289	TCAGGGTGTGCATATAAATACAAAAG	58.005	34.615	0.00	0.00	0.00	2.27
2506	4960	6.288294	GTCTCAGGGTGTGCATATAAATACA	58.712	40.000	0.00	0.00	0.00	2.29
2613	7229	0.465287	CCTGCAATAACATTGGCCCC	59.535	55.000	0.00	0.00	0.00	5.80
2615	7231	2.362077	CCTACCTGCAATAACATTGGCC	59.638	50.000	0.00	0.00	0.00	5.36
2627	7276	2.434843	CGCTCCATCCCTACCTGCA	61.435	63.158	0.00	0.00	0.00	4.41
2665	7314	1.005156	TCTGTAGCGTGTGCATGCA	60.005	52.632	18.46	18.46	45.42	3.96
2670	7319	0.994995	CAGATGTCTGTAGCGTGTGC	59.005	55.000	1.84	0.00	39.09	4.57
2680	7329	2.955477	TCTACAGCAGCAGATGTCTG	57.045	50.000	2.29	5.66	41.22	3.51
2754	7448	8.085296	CGGATCTACTAGTAGCATTTCATCTTT	58.915	37.037	22.87	0.00	33.32	2.52
2765	7459	5.298777	TGTTTTCCTCGGATCTACTAGTAGC	59.701	44.000	22.87	11.25	33.32	3.58
2779	7477	5.519927	AGTGCATTTCTTTTTGTTTTCCTCG	59.480	36.000	0.00	0.00	0.00	4.63
2838	7537	1.539827	GTGTTGTGTTGCTATCCACCC	59.460	52.381	0.00	0.00	0.00	4.61
2840	7604	1.871039	ACGTGTTGTGTTGCTATCCAC	59.129	47.619	0.00	0.00	0.00	4.02
2909	7680	1.934956	CTGCGTGCGCTACTACGAG	60.935	63.158	20.44	11.26	42.54	4.18
2911	7682	1.934956	CTCTGCGTGCGCTACTACG	60.935	63.158	17.49	11.69	42.51	3.51
2912	7683	2.224885	GCTCTGCGTGCGCTACTAC	61.225	63.158	17.49	0.00	42.51	2.73
2955	8073	3.783191	TGCATGCGCATGAATAAACAAT	58.217	36.364	45.47	10.44	45.36	2.71
3025	8143	9.872684	AAACCATAAGCCACTATACTAGTAGTA	57.127	33.333	12.38	12.38	37.23	1.82
3027	8145	9.477484	CAAAACCATAAGCCACTATACTAGTAG	57.523	37.037	8.85	0.00	37.23	2.57
3032	8150	4.887655	GGCAAAACCATAAGCCACTATACT	59.112	41.667	0.00	0.00	46.26	2.12
3033	8151	5.183014	GGCAAAACCATAAGCCACTATAC	57.817	43.478	0.00	0.00	46.26	1.47
3062	8180	1.741770	GGCGGCTAGGTCACAACAG	60.742	63.158	0.00	0.00	0.00	3.16
3063	8181	2.345991	GGCGGCTAGGTCACAACA	59.654	61.111	0.00	0.00	0.00	3.33

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.