Multiple sequence alignment - TraesCS3D01G258700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G258700 chr3D 100.000 2972 0 0 1 2972 360690469 360693440 0.000000e+00 5489.0
1 TraesCS3D01G258700 chr3D 84.776 1051 121 21 1059 2087 149544281 149545314 0.000000e+00 1018.0
2 TraesCS3D01G258700 chr3D 87.358 878 81 16 1059 1919 149205120 149205984 0.000000e+00 979.0
3 TraesCS3D01G258700 chr3D 87.159 880 83 16 1062 1924 147335979 147335113 0.000000e+00 972.0
4 TraesCS3D01G258700 chr3D 87.938 771 84 6 1059 1826 141410646 141411410 0.000000e+00 900.0
5 TraesCS3D01G258700 chr3D 86.468 436 37 12 2538 2961 149548499 149548924 2.700000e-125 459.0
6 TraesCS3D01G258700 chr3D 88.372 387 35 6 2587 2972 149764528 149764151 9.710000e-125 457.0
7 TraesCS3D01G258700 chr3D 86.260 262 26 7 2713 2972 152696879 152696626 2.920000e-70 276.0
8 TraesCS3D01G258700 chr3D 90.426 94 8 1 2447 2539 495804861 495804954 4.020000e-24 122.0
9 TraesCS3D01G258700 chr3D 97.619 42 0 1 879 919 360691229 360691270 1.480000e-08 71.3
10 TraesCS3D01G258700 chr3D 97.619 42 0 1 761 802 360691347 360691387 1.480000e-08 71.3
11 TraesCS3D01G258700 chr3B 88.041 1062 72 35 1440 2456 469631611 469632662 0.000000e+00 1206.0
12 TraesCS3D01G258700 chr3B 85.019 1048 118 17 1059 2085 203345783 203346812 0.000000e+00 1029.0
13 TraesCS3D01G258700 chr3B 85.067 1038 121 16 1059 2082 203549195 203550212 0.000000e+00 1027.0
14 TraesCS3D01G258700 chr3B 81.827 1073 109 33 1064 2084 223677866 223676828 0.000000e+00 822.0
15 TraesCS3D01G258700 chr3B 90.581 637 32 10 814 1450 469630539 469631147 0.000000e+00 819.0
16 TraesCS3D01G258700 chr3B 90.135 446 26 9 2538 2972 469632661 469633099 5.560000e-157 564.0
17 TraesCS3D01G258700 chr3B 82.121 660 83 15 1443 2085 221749621 221750262 1.570000e-147 532.0
18 TraesCS3D01G258700 chr3B 85.809 451 47 6 1064 1512 223558675 223558240 2.090000e-126 462.0
19 TraesCS3D01G258700 chr3B 88.624 378 36 5 2587 2963 221984945 221985316 1.260000e-123 453.0
20 TraesCS3D01G258700 chr3B 87.288 236 17 7 560 790 469630314 469630541 1.060000e-64 257.0
21 TraesCS3D01G258700 chr3B 87.387 222 22 5 2720 2941 223526297 223526082 1.770000e-62 250.0
22 TraesCS3D01G258700 chr3A 85.563 1039 114 16 1059 2085 159832045 159833059 0.000000e+00 1055.0
23 TraesCS3D01G258700 chr3A 84.950 1010 116 19 1059 2052 166923478 166924467 0.000000e+00 990.0
24 TraesCS3D01G258700 chr3A 86.751 317 30 5 2656 2972 181134714 181135018 2.840000e-90 342.0
25 TraesCS3D01G258700 chr3A 85.000 260 22 12 2713 2963 177893316 177893567 6.360000e-62 248.0
26 TraesCS3D01G258700 chr3A 89.109 101 7 3 2443 2543 550416167 550416263 4.020000e-24 122.0
27 TraesCS3D01G258700 chr6A 84.571 1037 122 18 1062 2085 146441565 146440554 0.000000e+00 994.0
28 TraesCS3D01G258700 chr2D 94.085 541 32 0 1 541 533092507 533091967 0.000000e+00 822.0
29 TraesCS3D01G258700 chr2D 93.258 89 6 0 2455 2543 627260882 627260970 6.680000e-27 132.0
30 TraesCS3D01G258700 chr2D 92.391 92 5 2 2455 2546 317889875 317889786 2.400000e-26 130.0
31 TraesCS3D01G258700 chr4A 93.542 542 34 1 1 541 625030127 625030668 0.000000e+00 806.0
32 TraesCS3D01G258700 chr7D 89.522 544 43 7 1 544 254371806 254372335 0.000000e+00 676.0
33 TraesCS3D01G258700 chr7D 89.691 97 9 1 2445 2540 567719805 567719901 4.020000e-24 122.0
34 TraesCS3D01G258700 chr7B 86.137 541 50 3 1 541 231696154 231696669 7.190000e-156 560.0
35 TraesCS3D01G258700 chr7A 93.834 373 22 1 1 372 74649672 74649300 7.190000e-156 560.0
36 TraesCS3D01G258700 chr5D 94.253 87 5 0 2455 2541 494463685 494463599 1.860000e-27 134.0
37 TraesCS3D01G258700 chr5D 91.667 96 7 1 2450 2544 196857570 196857665 6.680000e-27 132.0
38 TraesCS3D01G258700 chr6D 92.391 92 6 1 2450 2540 146072817 146072908 2.400000e-26 130.0
39 TraesCS3D01G258700 chr4D 91.398 93 6 2 2453 2544 403409616 403409525 3.110000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G258700 chr3D 360690469 360693440 2971 False 1877.2 5489 98.412667 1 2972 3 chr3D.!!$F5 2971
1 TraesCS3D01G258700 chr3D 149205120 149205984 864 False 979.0 979 87.358000 1059 1919 1 chr3D.!!$F2 860
2 TraesCS3D01G258700 chr3D 147335113 147335979 866 True 972.0 972 87.159000 1062 1924 1 chr3D.!!$R1 862
3 TraesCS3D01G258700 chr3D 141410646 141411410 764 False 900.0 900 87.938000 1059 1826 1 chr3D.!!$F1 767
4 TraesCS3D01G258700 chr3D 149544281 149548924 4643 False 738.5 1018 85.622000 1059 2961 2 chr3D.!!$F4 1902
5 TraesCS3D01G258700 chr3B 203345783 203346812 1029 False 1029.0 1029 85.019000 1059 2085 1 chr3B.!!$F1 1026
6 TraesCS3D01G258700 chr3B 203549195 203550212 1017 False 1027.0 1027 85.067000 1059 2082 1 chr3B.!!$F2 1023
7 TraesCS3D01G258700 chr3B 223676828 223677866 1038 True 822.0 822 81.827000 1064 2084 1 chr3B.!!$R3 1020
8 TraesCS3D01G258700 chr3B 469630314 469633099 2785 False 711.5 1206 89.011250 560 2972 4 chr3B.!!$F5 2412
9 TraesCS3D01G258700 chr3B 221749621 221750262 641 False 532.0 532 82.121000 1443 2085 1 chr3B.!!$F3 642
10 TraesCS3D01G258700 chr3A 159832045 159833059 1014 False 1055.0 1055 85.563000 1059 2085 1 chr3A.!!$F1 1026
11 TraesCS3D01G258700 chr3A 166923478 166924467 989 False 990.0 990 84.950000 1059 2052 1 chr3A.!!$F2 993
12 TraesCS3D01G258700 chr6A 146440554 146441565 1011 True 994.0 994 84.571000 1062 2085 1 chr6A.!!$R1 1023
13 TraesCS3D01G258700 chr2D 533091967 533092507 540 True 822.0 822 94.085000 1 541 1 chr2D.!!$R2 540
14 TraesCS3D01G258700 chr4A 625030127 625030668 541 False 806.0 806 93.542000 1 541 1 chr4A.!!$F1 540
15 TraesCS3D01G258700 chr7D 254371806 254372335 529 False 676.0 676 89.522000 1 544 1 chr7D.!!$F1 543
16 TraesCS3D01G258700 chr7B 231696154 231696669 515 False 560.0 560 86.137000 1 541 1 chr7B.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 795 0.318699 GAAAGCGCCAACTGTTTCCC 60.319 55.0 2.29 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 5971 0.409092 TCCCTCCGGCCCGTAATATA 59.591 55.0 0.85 0.0 0.0 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.660064 CGGAACTGGGCCTGTAGCT 61.660 63.158 16.99 0.74 43.05 3.32
363 365 4.379243 CGCCAGAACACGAGCCCT 62.379 66.667 0.00 0.00 0.00 5.19
547 549 4.646877 GACACGGGGGCGGGAAAA 62.647 66.667 0.00 0.00 0.00 2.29
548 550 4.960866 ACACGGGGGCGGGAAAAC 62.961 66.667 0.00 0.00 0.00 2.43
549 551 4.653888 CACGGGGGCGGGAAAACT 62.654 66.667 0.00 0.00 0.00 2.66
550 552 4.653888 ACGGGGGCGGGAAAACTG 62.654 66.667 0.00 0.00 0.00 3.16
552 554 3.974293 GGGGGCGGGAAAACTGGA 61.974 66.667 0.00 0.00 0.00 3.86
553 555 2.675423 GGGGCGGGAAAACTGGAC 60.675 66.667 0.00 0.00 0.00 4.02
554 556 2.675423 GGGCGGGAAAACTGGACC 60.675 66.667 0.00 0.00 0.00 4.46
558 560 4.391869 GGGAAAACTGGACCGACC 57.608 61.111 0.00 0.00 39.54 4.79
559 561 1.670083 GGGAAAACTGGACCGACCG 60.670 63.158 0.00 0.00 42.61 4.79
560 562 1.368579 GGAAAACTGGACCGACCGA 59.631 57.895 0.00 0.00 42.61 4.69
561 563 0.947660 GGAAAACTGGACCGACCGAC 60.948 60.000 0.00 0.00 42.61 4.79
562 564 1.280206 GAAAACTGGACCGACCGACG 61.280 60.000 0.00 0.00 42.61 5.12
563 565 3.853597 AAACTGGACCGACCGACGC 62.854 63.158 0.00 0.00 42.61 5.19
568 570 4.446413 GACCGACCGACGCCCAAT 62.446 66.667 0.00 0.00 41.07 3.16
581 583 3.088532 ACGCCCAATGCTAAAAATCTGA 58.911 40.909 0.00 0.00 38.05 3.27
586 588 5.276270 CCCAATGCTAAAAATCTGATGTCG 58.724 41.667 0.00 0.00 0.00 4.35
588 590 5.163622 CCAATGCTAAAAATCTGATGTCGGT 60.164 40.000 0.00 0.00 0.00 4.69
620 626 9.853177 AGTAATTCCGAAGAAAAATAGATGGAT 57.147 29.630 0.00 0.00 35.09 3.41
663 669 7.392393 GGTCTTTACCACAGCCTTAGATTTTAA 59.608 37.037 0.00 0.00 45.98 1.52
670 676 6.751888 CCACAGCCTTAGATTTTAATTTTCCG 59.248 38.462 0.00 0.00 0.00 4.30
672 678 5.748630 CAGCCTTAGATTTTAATTTTCCGCC 59.251 40.000 0.00 0.00 0.00 6.13
673 679 5.420739 AGCCTTAGATTTTAATTTTCCGCCA 59.579 36.000 0.00 0.00 0.00 5.69
674 680 6.071051 AGCCTTAGATTTTAATTTTCCGCCAA 60.071 34.615 0.00 0.00 0.00 4.52
675 681 6.592220 GCCTTAGATTTTAATTTTCCGCCAAA 59.408 34.615 0.00 0.00 0.00 3.28
676 682 7.279981 GCCTTAGATTTTAATTTTCCGCCAAAT 59.720 33.333 0.00 0.00 0.00 2.32
677 683 8.817100 CCTTAGATTTTAATTTTCCGCCAAATC 58.183 33.333 0.00 0.00 32.91 2.17
688 694 1.203052 CCGCCAAATCAAATCACAGCT 59.797 47.619 0.00 0.00 0.00 4.24
701 707 9.715121 ATCAAATCACAGCTTTTGTTTGATTAT 57.285 25.926 18.24 8.06 39.79 1.28
725 731 1.371183 CAGAGCCAACTGTTCCCGA 59.629 57.895 0.00 0.00 33.73 5.14
735 742 3.429043 TGTTCCCGACAGCGATTAC 57.571 52.632 0.00 0.00 40.82 1.89
770 777 0.965866 ATCGACAGCTGTTCTCCCGA 60.966 55.000 24.19 24.19 32.65 5.14
785 792 1.358759 CCGAAAGCGCCAACTGTTT 59.641 52.632 2.29 0.00 35.83 2.83
786 793 0.660300 CCGAAAGCGCCAACTGTTTC 60.660 55.000 2.29 5.57 35.83 2.78
787 794 0.660300 CGAAAGCGCCAACTGTTTCC 60.660 55.000 2.29 0.00 0.00 3.13
788 795 0.318699 GAAAGCGCCAACTGTTTCCC 60.319 55.000 2.29 0.00 0.00 3.97
789 796 2.070654 AAAGCGCCAACTGTTTCCCG 62.071 55.000 2.29 0.00 0.00 5.14
790 797 4.700365 GCGCCAACTGTTTCCCGC 62.700 66.667 0.00 11.60 34.50 6.13
791 798 4.383602 CGCCAACTGTTTCCCGCG 62.384 66.667 0.00 0.00 0.00 6.46
792 799 2.975799 GCCAACTGTTTCCCGCGA 60.976 61.111 8.23 0.00 0.00 5.87
793 800 2.966309 GCCAACTGTTTCCCGCGAG 61.966 63.158 8.23 0.00 0.00 5.03
794 801 2.556287 CAACTGTTTCCCGCGAGC 59.444 61.111 8.23 0.00 0.00 5.03
795 802 3.041940 AACTGTTTCCCGCGAGCG 61.042 61.111 8.23 10.86 39.44 5.03
796 803 3.509137 AACTGTTTCCCGCGAGCGA 62.509 57.895 19.72 0.00 42.83 4.93
797 804 2.509336 CTGTTTCCCGCGAGCGAT 60.509 61.111 19.72 0.00 42.83 4.58
798 805 2.047655 TGTTTCCCGCGAGCGATT 60.048 55.556 19.72 0.00 42.83 3.34
799 806 0.804544 CTGTTTCCCGCGAGCGATTA 60.805 55.000 19.72 0.64 42.83 1.75
800 807 1.079875 TGTTTCCCGCGAGCGATTAC 61.080 55.000 19.72 11.13 42.83 1.89
801 808 1.874915 TTTCCCGCGAGCGATTACG 60.875 57.895 19.72 1.27 42.83 3.18
802 809 2.268988 TTTCCCGCGAGCGATTACGA 62.269 55.000 19.72 3.40 42.83 3.43
803 810 2.268988 TTCCCGCGAGCGATTACGAA 62.269 55.000 19.72 8.96 42.83 3.85
804 811 2.293627 CCCGCGAGCGATTACGAAG 61.294 63.158 19.72 0.00 42.83 3.79
805 812 2.293627 CCGCGAGCGATTACGAAGG 61.294 63.158 19.72 0.00 42.83 3.46
806 813 1.298116 CGCGAGCGATTACGAAGGA 60.298 57.895 12.58 0.00 42.83 3.36
807 814 0.864377 CGCGAGCGATTACGAAGGAA 60.864 55.000 12.58 0.00 42.83 3.36
808 815 0.571197 GCGAGCGATTACGAAGGAAC 59.429 55.000 0.00 0.00 42.66 3.62
809 816 0.838229 CGAGCGATTACGAAGGAACG 59.162 55.000 0.00 0.00 42.66 3.95
810 817 1.530441 CGAGCGATTACGAAGGAACGA 60.530 52.381 0.00 0.00 42.66 3.85
811 818 2.523015 GAGCGATTACGAAGGAACGAA 58.477 47.619 0.00 0.00 42.66 3.85
812 819 3.114065 GAGCGATTACGAAGGAACGAAT 58.886 45.455 0.00 0.00 42.66 3.34
852 859 4.773013 GGTGTTTCCTCCGATGGTATTTA 58.227 43.478 0.00 0.00 0.00 1.40
853 860 5.187687 GGTGTTTCCTCCGATGGTATTTAA 58.812 41.667 0.00 0.00 0.00 1.52
898 905 1.527380 TTTCCCGAAAGCGCCAACT 60.527 52.632 2.29 0.00 35.83 3.16
942 949 2.092291 CCTAGTTTTCGCTCGCGCA 61.092 57.895 8.75 0.00 39.59 6.09
969 976 0.462759 CCCCAGATCTCGAGTTTGCC 60.463 60.000 13.13 0.00 0.00 4.52
971 978 0.807667 CCAGATCTCGAGTTTGCCCG 60.808 60.000 13.13 0.00 0.00 6.13
998 1005 2.618300 CGCGCGCATATTGACGAA 59.382 55.556 32.61 0.00 0.00 3.85
1003 1010 1.522676 CGCGCATATTGACGAAGATGT 59.477 47.619 8.75 0.00 33.95 3.06
1016 1023 1.869767 GAAGATGTCACCGATCATGGC 59.130 52.381 0.00 0.00 0.00 4.40
1221 1228 1.735559 GTACGTTCGCCCCAGACAC 60.736 63.158 0.00 0.00 0.00 3.67
1419 1426 4.695993 TGCCGCACCATGCTCGAA 62.696 61.111 0.00 0.00 42.25 3.71
1471 1952 1.202580 CCTCCTACTTTGATCGCTGGG 60.203 57.143 0.00 0.00 0.00 4.45
1942 2528 2.931068 GCCAACCGCTTCTTTGGGG 61.931 63.158 2.69 0.00 42.34 4.96
1993 2584 1.147376 CGTGTGGACCAGGACCAAA 59.853 57.895 12.76 4.17 39.22 3.28
2052 2643 1.001293 TCCAGTGTAGCTCAGCTGTTG 59.999 52.381 10.31 9.26 40.10 3.33
2059 2650 1.008079 GCTCAGCTGTTGGTGTTGC 60.008 57.895 14.67 3.23 41.91 4.17
2090 2690 3.888323 GCCATCAGTATCAGAGTCTGAGA 59.112 47.826 26.13 20.25 44.08 3.27
2092 2692 5.565242 GCCATCAGTATCAGAGTCTGAGATG 60.565 48.000 27.58 27.58 44.08 2.90
2093 2693 5.769162 CCATCAGTATCAGAGTCTGAGATGA 59.231 44.000 32.01 28.70 44.08 2.92
2094 2694 6.434965 CCATCAGTATCAGAGTCTGAGATGAT 59.565 42.308 32.01 29.26 44.08 2.45
2096 2696 7.509141 TCAGTATCAGAGTCTGAGATGATTC 57.491 40.000 26.13 10.92 44.08 2.52
2099 2699 8.724229 CAGTATCAGAGTCTGAGATGATTCTAG 58.276 40.741 26.13 7.77 44.08 2.43
2101 2701 7.991084 ATCAGAGTCTGAGATGATTCTAGAG 57.009 40.000 26.13 0.00 44.08 2.43
2102 2702 7.135591 TCAGAGTCTGAGATGATTCTAGAGA 57.864 40.000 19.10 0.00 35.39 3.10
2103 2703 7.748677 TCAGAGTCTGAGATGATTCTAGAGAT 58.251 38.462 19.10 0.00 35.39 2.75
2104 2704 7.879677 TCAGAGTCTGAGATGATTCTAGAGATC 59.120 40.741 19.10 0.68 35.39 2.75
2105 2705 7.881751 CAGAGTCTGAGATGATTCTAGAGATCT 59.118 40.741 15.46 0.00 32.44 2.75
2106 2706 8.099537 AGAGTCTGAGATGATTCTAGAGATCTC 58.900 40.741 15.29 15.29 40.80 2.75
2110 2710 7.017452 TCTGAGATGATTCTAGAGATCTCCTGA 59.983 40.741 19.30 14.17 40.03 3.86
2118 2718 9.520515 GATTCTAGAGATCTCCTGATTCTACTT 57.479 37.037 19.30 0.00 32.19 2.24
2131 2731 7.776030 TCCTGATTCTACTTTAGTCCTAGTCTG 59.224 40.741 0.00 0.00 0.00 3.51
2151 2765 2.191128 GTGGTCTCACCTCAGCAATT 57.809 50.000 0.00 0.00 39.58 2.32
2153 2767 1.699083 TGGTCTCACCTCAGCAATTGA 59.301 47.619 10.34 0.00 39.58 2.57
2157 2771 4.507710 GTCTCACCTCAGCAATTGATGTA 58.492 43.478 22.14 9.19 33.55 2.29
2158 2772 4.937620 GTCTCACCTCAGCAATTGATGTAA 59.062 41.667 22.14 4.32 33.55 2.41
2159 2773 5.587844 GTCTCACCTCAGCAATTGATGTAAT 59.412 40.000 22.14 7.00 33.55 1.89
2215 2952 8.990163 TTGTTTTAGTTAATGTTCCTTCTCCT 57.010 30.769 0.00 0.00 0.00 3.69
2216 2953 8.617290 TGTTTTAGTTAATGTTCCTTCTCCTC 57.383 34.615 0.00 0.00 0.00 3.71
2220 2957 6.110411 AGTTAATGTTCCTTCTCCTCGAAA 57.890 37.500 0.00 0.00 0.00 3.46
2225 2962 5.941948 TGTTCCTTCTCCTCGAAATTTTC 57.058 39.130 0.00 0.00 0.00 2.29
2288 3039 8.397906 TGCTGACGAATAAAGAAAGATAAATGG 58.602 33.333 0.00 0.00 0.00 3.16
2334 3798 4.141620 ACTCATATGGCAAGACTGGTTAGG 60.142 45.833 2.13 0.00 0.00 2.69
2349 5796 6.349300 ACTGGTTAGGATAAATACAGCACAG 58.651 40.000 0.00 0.00 0.00 3.66
2398 5848 9.941325 ATCCTTATTGATAGAAATACAGCAGAG 57.059 33.333 0.00 0.00 0.00 3.35
2456 5911 6.404403 GGCAAGGCTGGTTAAGATAAAACTAC 60.404 42.308 0.00 0.00 0.00 2.73
2457 5912 6.374613 GCAAGGCTGGTTAAGATAAAACTACT 59.625 38.462 0.00 0.00 0.00 2.57
2458 5913 7.414208 GCAAGGCTGGTTAAGATAAAACTACTC 60.414 40.741 0.00 0.00 0.00 2.59
2459 5914 6.651086 AGGCTGGTTAAGATAAAACTACTCC 58.349 40.000 0.00 0.00 0.00 3.85
2460 5915 5.821470 GGCTGGTTAAGATAAAACTACTCCC 59.179 44.000 0.00 0.00 0.00 4.30
2461 5916 6.352823 GGCTGGTTAAGATAAAACTACTCCCT 60.353 42.308 0.00 0.00 0.00 4.20
2462 5917 6.762187 GCTGGTTAAGATAAAACTACTCCCTC 59.238 42.308 0.00 0.00 0.00 4.30
2463 5918 7.191593 TGGTTAAGATAAAACTACTCCCTCC 57.808 40.000 0.00 0.00 0.00 4.30
2464 5919 6.127253 TGGTTAAGATAAAACTACTCCCTCCG 60.127 42.308 0.00 0.00 0.00 4.63
2465 5920 6.127225 GGTTAAGATAAAACTACTCCCTCCGT 60.127 42.308 0.00 0.00 0.00 4.69
2466 5921 5.595257 AAGATAAAACTACTCCCTCCGTC 57.405 43.478 0.00 0.00 0.00 4.79
2467 5922 4.869451 AGATAAAACTACTCCCTCCGTCT 58.131 43.478 0.00 0.00 0.00 4.18
2468 5923 4.888823 AGATAAAACTACTCCCTCCGTCTC 59.111 45.833 0.00 0.00 0.00 3.36
2469 5924 2.599408 AAACTACTCCCTCCGTCTCA 57.401 50.000 0.00 0.00 0.00 3.27
2470 5925 2.830651 AACTACTCCCTCCGTCTCAT 57.169 50.000 0.00 0.00 0.00 2.90
2471 5926 3.947612 AACTACTCCCTCCGTCTCATA 57.052 47.619 0.00 0.00 0.00 2.15
2472 5927 3.947612 ACTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
2473 5928 4.456662 ACTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
2474 5929 5.579753 ACTACTCCCTCCGTCTCATAATA 57.420 43.478 0.00 0.00 0.00 0.98
2475 5930 6.142259 ACTACTCCCTCCGTCTCATAATAT 57.858 41.667 0.00 0.00 0.00 1.28
2476 5931 7.268212 ACTACTCCCTCCGTCTCATAATATA 57.732 40.000 0.00 0.00 0.00 0.86
2477 5932 7.696981 ACTACTCCCTCCGTCTCATAATATAA 58.303 38.462 0.00 0.00 0.00 0.98
2478 5933 7.830201 ACTACTCCCTCCGTCTCATAATATAAG 59.170 40.741 0.00 0.00 0.00 1.73
2479 5934 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
2480 5935 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
2481 5936 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
2482 5937 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
2483 5938 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
2484 5939 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
2485 5940 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
2486 5941 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
2487 5942 7.594015 TCCGTCTCATAATATAAGAGCGTTTTC 59.406 37.037 0.00 0.00 31.69 2.29
2488 5943 7.595502 CCGTCTCATAATATAAGAGCGTTTTCT 59.404 37.037 0.00 0.00 31.69 2.52
2489 5944 9.608617 CGTCTCATAATATAAGAGCGTTTTCTA 57.391 33.333 0.00 0.00 0.00 2.10
2495 5950 7.772332 AATATAAGAGCGTTTTCTACACTGG 57.228 36.000 0.00 0.00 0.00 4.00
2496 5951 3.470645 AAGAGCGTTTTCTACACTGGT 57.529 42.857 0.00 0.00 0.00 4.00
2497 5952 2.755650 AGAGCGTTTTCTACACTGGTG 58.244 47.619 0.00 0.00 0.00 4.17
2498 5953 2.102588 AGAGCGTTTTCTACACTGGTGT 59.897 45.455 11.20 11.20 46.87 4.16
2499 5954 3.319972 AGAGCGTTTTCTACACTGGTGTA 59.680 43.478 12.21 12.21 44.42 2.90
2526 5981 8.259049 TGTCAAAAACACTCTTATATTACGGG 57.741 34.615 0.00 0.00 31.20 5.28
2527 5982 7.148373 TGTCAAAAACACTCTTATATTACGGGC 60.148 37.037 0.00 0.00 31.20 6.13
2528 5983 6.316890 TCAAAAACACTCTTATATTACGGGCC 59.683 38.462 0.00 0.00 0.00 5.80
2529 5984 3.655276 ACACTCTTATATTACGGGCCG 57.345 47.619 27.06 27.06 0.00 6.13
2530 5985 2.298163 ACACTCTTATATTACGGGCCGG 59.702 50.000 31.78 12.53 0.00 6.13
2531 5986 2.559668 CACTCTTATATTACGGGCCGGA 59.440 50.000 31.78 21.84 0.00 5.14
2532 5987 2.824341 ACTCTTATATTACGGGCCGGAG 59.176 50.000 31.78 24.12 0.00 4.63
2630 6097 4.627058 TCGATTCACTGTGCTGAACTTTA 58.373 39.130 2.12 0.00 32.95 1.85
2642 6109 5.344128 GTGCTGAACTTTACTTGCAATGATG 59.656 40.000 0.00 0.00 32.10 3.07
2685 6152 3.920231 TCCCAAACTCTCTCATGGATG 57.080 47.619 0.00 0.00 34.82 3.51
2703 6170 1.971481 TGCAGCAAGACTTGTCATGT 58.029 45.000 16.39 0.00 0.00 3.21
2711 6178 4.972440 GCAAGACTTGTCATGTGTTCTTTC 59.028 41.667 16.39 0.00 0.00 2.62
2728 6195 9.803315 GTGTTCTTTCAACTCCTTTTCTTTATT 57.197 29.630 0.00 0.00 0.00 1.40
2873 6340 8.918658 CATTTGAATTGATCTCATTTTGACGTT 58.081 29.630 0.00 0.00 0.00 3.99
2887 6354 1.004080 ACGTTCATGCTGCAGAGCT 60.004 52.632 20.43 0.00 46.39 4.09
2927 6394 7.182761 CGACAATCATATCAAACTCCTTGTTC 58.817 38.462 0.00 0.00 38.03 3.18
2942 6409 8.779354 ACTCCTTGTTCTTTTCAGATATACAC 57.221 34.615 0.00 0.00 0.00 2.90
2943 6410 8.375506 ACTCCTTGTTCTTTTCAGATATACACA 58.624 33.333 0.00 0.00 0.00 3.72
2968 6435 5.048434 AGTCTTGCTTTTCCACTTTATCTGC 60.048 40.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.735973 CGATGGCTGATGTCTCGGA 59.264 57.895 0.00 0.00 0.00 4.55
544 546 1.300388 CGTCGGTCGGTCCAGTTTT 60.300 57.895 0.00 0.00 35.57 2.43
545 547 2.337532 CGTCGGTCGGTCCAGTTT 59.662 61.111 0.00 0.00 35.57 2.66
546 548 4.353437 GCGTCGGTCGGTCCAGTT 62.353 66.667 0.00 0.00 40.26 3.16
551 553 4.446413 ATTGGGCGTCGGTCGGTC 62.446 66.667 0.00 0.00 40.26 4.79
552 554 4.752879 CATTGGGCGTCGGTCGGT 62.753 66.667 0.00 0.00 40.26 4.69
562 564 5.014808 ACATCAGATTTTTAGCATTGGGC 57.985 39.130 0.00 0.00 45.30 5.36
563 565 5.276270 CGACATCAGATTTTTAGCATTGGG 58.724 41.667 0.00 0.00 0.00 4.12
564 566 5.163622 ACCGACATCAGATTTTTAGCATTGG 60.164 40.000 0.00 0.00 0.00 3.16
565 567 5.883661 ACCGACATCAGATTTTTAGCATTG 58.116 37.500 0.00 0.00 0.00 2.82
566 568 6.515272 AACCGACATCAGATTTTTAGCATT 57.485 33.333 0.00 0.00 0.00 3.56
567 569 6.515272 AAACCGACATCAGATTTTTAGCAT 57.485 33.333 0.00 0.00 0.00 3.79
568 570 5.957842 AAACCGACATCAGATTTTTAGCA 57.042 34.783 0.00 0.00 0.00 3.49
597 599 8.752005 TGATCCATCTATTTTTCTTCGGAATT 57.248 30.769 0.00 0.00 33.58 2.17
620 626 2.698797 AGACCCGTTTTGACTCTTCTGA 59.301 45.455 0.00 0.00 0.00 3.27
663 669 4.892433 TGTGATTTGATTTGGCGGAAAAT 58.108 34.783 0.00 0.00 32.43 1.82
670 676 4.512571 ACAAAAGCTGTGATTTGATTTGGC 59.487 37.500 14.06 0.00 38.50 4.52
672 678 7.686519 TCAAACAAAAGCTGTGATTTGATTTG 58.313 30.769 14.06 16.77 38.67 2.32
673 679 7.846644 TCAAACAAAAGCTGTGATTTGATTT 57.153 28.000 14.06 8.61 38.67 2.17
674 680 8.441312 AATCAAACAAAAGCTGTGATTTGATT 57.559 26.923 23.54 23.54 42.66 2.57
675 681 9.715121 ATAATCAAACAAAAGCTGTGATTTGAT 57.285 25.926 17.30 17.30 41.56 2.57
688 694 9.823647 TGGCTCTGTTTTTATAATCAAACAAAA 57.176 25.926 13.69 6.95 41.26 2.44
707 713 0.951040 GTCGGGAACAGTTGGCTCTG 60.951 60.000 0.00 8.28 40.80 3.35
708 714 1.371558 GTCGGGAACAGTTGGCTCT 59.628 57.895 0.00 0.00 0.00 4.09
709 715 1.070786 TGTCGGGAACAGTTGGCTC 59.929 57.895 0.00 0.00 32.81 4.70
710 716 3.236391 TGTCGGGAACAGTTGGCT 58.764 55.556 0.00 0.00 32.81 4.75
725 731 7.591006 TTTTAATCTTCTTCGTAATCGCTGT 57.409 32.000 0.00 0.00 36.96 4.40
770 777 1.739667 GGGAAACAGTTGGCGCTTT 59.260 52.632 7.64 0.00 0.00 3.51
785 792 2.657484 CTTCGTAATCGCTCGCGGGA 62.657 60.000 12.03 3.60 40.25 5.14
786 793 2.278336 TTCGTAATCGCTCGCGGG 60.278 61.111 6.13 2.60 40.25 6.13
787 794 2.293627 CCTTCGTAATCGCTCGCGG 61.294 63.158 6.13 0.00 40.25 6.46
788 795 0.864377 TTCCTTCGTAATCGCTCGCG 60.864 55.000 0.00 0.00 41.35 5.87
789 796 0.571197 GTTCCTTCGTAATCGCTCGC 59.429 55.000 0.00 0.00 36.96 5.03
790 797 0.838229 CGTTCCTTCGTAATCGCTCG 59.162 55.000 0.00 0.00 36.96 5.03
791 798 2.184385 TCGTTCCTTCGTAATCGCTC 57.816 50.000 0.00 0.00 36.96 5.03
792 799 2.642139 TTCGTTCCTTCGTAATCGCT 57.358 45.000 0.00 0.00 36.96 4.93
793 800 2.218075 GGATTCGTTCCTTCGTAATCGC 59.782 50.000 0.66 0.00 41.78 4.58
794 801 2.466571 CGGATTCGTTCCTTCGTAATCG 59.533 50.000 5.78 0.00 42.99 3.34
795 802 3.699067 TCGGATTCGTTCCTTCGTAATC 58.301 45.455 0.00 0.00 42.99 1.75
796 803 3.788333 TCGGATTCGTTCCTTCGTAAT 57.212 42.857 0.00 0.00 42.99 1.89
797 804 3.788333 ATCGGATTCGTTCCTTCGTAA 57.212 42.857 0.00 0.00 42.99 3.18
798 805 3.788333 AATCGGATTCGTTCCTTCGTA 57.212 42.857 0.00 0.00 42.99 3.43
799 806 2.667473 AATCGGATTCGTTCCTTCGT 57.333 45.000 0.00 0.00 42.99 3.85
800 807 2.034842 CGAAATCGGATTCGTTCCTTCG 60.035 50.000 3.28 4.22 45.32 3.79
801 808 3.570939 CGAAATCGGATTCGTTCCTTC 57.429 47.619 3.28 0.00 45.32 3.46
809 816 3.729716 CCGTTCTAGTCGAAATCGGATTC 59.270 47.826 3.28 0.00 41.35 2.52
810 817 3.129988 ACCGTTCTAGTCGAAATCGGATT 59.870 43.478 11.81 0.00 41.35 3.01
811 818 2.686915 ACCGTTCTAGTCGAAATCGGAT 59.313 45.455 11.81 0.00 41.35 4.18
812 819 2.086869 ACCGTTCTAGTCGAAATCGGA 58.913 47.619 11.81 0.00 41.35 4.55
816 823 3.992427 GGAAACACCGTTCTAGTCGAAAT 59.008 43.478 10.52 0.00 32.41 2.17
876 883 2.254350 GCGCTTTCGGGAAACACC 59.746 61.111 0.00 0.00 35.95 4.16
877 884 2.065906 TTGGCGCTTTCGGGAAACAC 62.066 55.000 7.64 0.00 35.95 3.32
878 885 1.824329 TTGGCGCTTTCGGGAAACA 60.824 52.632 7.64 0.00 35.95 2.83
879 886 1.371267 GTTGGCGCTTTCGGGAAAC 60.371 57.895 7.64 0.00 35.95 2.78
880 887 1.527380 AGTTGGCGCTTTCGGGAAA 60.527 52.632 7.64 0.00 35.95 3.13
881 888 2.112297 AGTTGGCGCTTTCGGGAA 59.888 55.556 7.64 0.00 35.95 3.97
898 905 1.079875 GTAATCGCTCGCGGGAAACA 61.080 55.000 12.03 0.00 40.25 2.83
951 958 0.462759 GGGCAAACTCGAGATCTGGG 60.463 60.000 21.68 3.30 0.00 4.45
952 959 0.807667 CGGGCAAACTCGAGATCTGG 60.808 60.000 21.68 0.00 0.00 3.86
984 991 2.539688 TGACATCTTCGTCAATATGCGC 59.460 45.455 0.00 0.00 42.82 6.09
994 1001 2.481969 CCATGATCGGTGACATCTTCGT 60.482 50.000 0.00 0.00 0.00 3.85
998 1005 0.249615 CGCCATGATCGGTGACATCT 60.250 55.000 0.00 0.00 38.98 2.90
1044 1051 4.051167 TGCACCTGATGGCCCTGG 62.051 66.667 0.00 1.22 36.63 4.45
1350 1357 4.324991 ACGCGTCCCTTGTTCCCC 62.325 66.667 5.58 0.00 0.00 4.81
1570 2051 2.355837 GTCGAGTCCGCAGTGCAA 60.356 61.111 16.83 0.00 35.37 4.08
1804 2337 3.126879 CTGCTGAATCGCCGGCAA 61.127 61.111 28.98 9.13 46.55 4.52
1810 2343 2.403987 CTGCTGCTGCTGAATCGC 59.596 61.111 17.00 0.00 40.01 4.58
1868 2436 1.221466 GCAGTAGCACAAGCACGTCA 61.221 55.000 0.00 0.00 45.49 4.35
1925 2511 2.275380 CCCCCAAAGAAGCGGTTGG 61.275 63.158 3.70 0.00 43.37 3.77
1993 2584 1.522355 CCATGGCTCGTTCGCTCAT 60.522 57.895 0.00 0.00 0.00 2.90
2052 2643 2.391389 GGCTAGCACGAGCAACACC 61.391 63.158 18.24 0.00 44.76 4.16
2059 2650 2.294512 TGATACTGATGGCTAGCACGAG 59.705 50.000 18.24 8.75 0.00 4.18
2090 2690 9.466497 GTAGAATCAGGAGATCTCTAGAATCAT 57.534 37.037 21.81 13.13 31.90 2.45
2092 2692 9.520515 AAGTAGAATCAGGAGATCTCTAGAATC 57.479 37.037 21.81 19.36 31.90 2.52
2093 2693 9.881773 AAAGTAGAATCAGGAGATCTCTAGAAT 57.118 33.333 21.81 12.80 31.90 2.40
2096 2696 9.793259 ACTAAAGTAGAATCAGGAGATCTCTAG 57.207 37.037 21.81 14.34 31.90 2.43
2099 2699 7.724061 AGGACTAAAGTAGAATCAGGAGATCTC 59.276 40.741 14.75 14.75 31.90 2.75
2101 2701 7.833285 AGGACTAAAGTAGAATCAGGAGATC 57.167 40.000 0.00 0.00 31.90 2.75
2102 2702 8.507761 ACTAGGACTAAAGTAGAATCAGGAGAT 58.492 37.037 0.00 0.00 35.53 2.75
2103 2703 7.874252 ACTAGGACTAAAGTAGAATCAGGAGA 58.126 38.462 0.00 0.00 0.00 3.71
2104 2704 7.996644 AGACTAGGACTAAAGTAGAATCAGGAG 59.003 40.741 0.00 0.00 0.00 3.69
2105 2705 7.776030 CAGACTAGGACTAAAGTAGAATCAGGA 59.224 40.741 0.00 0.00 0.00 3.86
2106 2706 7.013846 CCAGACTAGGACTAAAGTAGAATCAGG 59.986 44.444 0.00 0.00 0.00 3.86
2110 2710 6.608002 CCACCAGACTAGGACTAAAGTAGAAT 59.392 42.308 0.00 0.00 0.00 2.40
2118 2718 3.332783 TGAGACCACCAGACTAGGACTAA 59.667 47.826 0.00 0.00 0.00 2.24
2204 2926 4.760204 TGGAAAATTTCGAGGAGAAGGAAC 59.240 41.667 0.00 0.00 40.40 3.62
2205 2927 4.980573 TGGAAAATTTCGAGGAGAAGGAA 58.019 39.130 0.00 0.00 40.40 3.36
2225 2962 9.627123 TTTAATTAGGAAGTCAATCCATACTGG 57.373 33.333 0.00 0.00 42.27 4.00
2268 3019 7.645340 CACTGCCCATTTATCTTTCTTTATTCG 59.355 37.037 0.00 0.00 0.00 3.34
2334 3798 4.446371 ACAGGCTCTGTGCTGTATTTATC 58.554 43.478 7.00 0.00 43.63 1.75
2349 5796 3.070748 GTCTCCTTTCTTTCACAGGCTC 58.929 50.000 0.00 0.00 0.00 4.70
2456 5911 6.183360 GCTCTTATATTATGAGACGGAGGGAG 60.183 46.154 0.00 0.00 33.20 4.30
2457 5912 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
2458 5913 5.449314 CGCTCTTATATTATGAGACGGAGGG 60.449 48.000 0.00 0.00 33.20 4.30
2459 5914 5.124138 ACGCTCTTATATTATGAGACGGAGG 59.876 44.000 16.71 3.20 35.72 4.30
2460 5915 6.184580 ACGCTCTTATATTATGAGACGGAG 57.815 41.667 16.71 6.33 35.72 4.63
2461 5916 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
2462 5917 7.595502 AGAAAACGCTCTTATATTATGAGACGG 59.404 37.037 16.71 7.11 35.72 4.79
2463 5918 8.508800 AGAAAACGCTCTTATATTATGAGACG 57.491 34.615 13.57 13.57 36.53 4.18
2469 5924 9.477484 CCAGTGTAGAAAACGCTCTTATATTAT 57.523 33.333 0.00 0.00 46.05 1.28
2470 5925 8.472413 ACCAGTGTAGAAAACGCTCTTATATTA 58.528 33.333 0.00 0.00 46.05 0.98
2471 5926 7.277981 CACCAGTGTAGAAAACGCTCTTATATT 59.722 37.037 0.00 0.00 46.05 1.28
2472 5927 6.757010 CACCAGTGTAGAAAACGCTCTTATAT 59.243 38.462 0.00 0.00 46.05 0.86
2473 5928 6.097356 CACCAGTGTAGAAAACGCTCTTATA 58.903 40.000 0.00 0.00 46.05 0.98
2474 5929 4.929808 CACCAGTGTAGAAAACGCTCTTAT 59.070 41.667 0.00 0.00 46.05 1.73
2475 5930 4.202182 ACACCAGTGTAGAAAACGCTCTTA 60.202 41.667 0.54 0.00 46.05 2.10
2476 5931 3.131396 CACCAGTGTAGAAAACGCTCTT 58.869 45.455 0.00 0.00 46.05 2.85
2477 5932 2.102588 ACACCAGTGTAGAAAACGCTCT 59.897 45.455 0.54 0.00 46.05 4.09
2478 5933 2.480845 ACACCAGTGTAGAAAACGCTC 58.519 47.619 0.54 0.00 46.05 5.03
2501 5956 7.148373 GCCCGTAATATAAGAGTGTTTTTGACA 60.148 37.037 0.00 0.00 35.42 3.58
2502 5957 7.184779 GCCCGTAATATAAGAGTGTTTTTGAC 58.815 38.462 0.00 0.00 0.00 3.18
2503 5958 6.316890 GGCCCGTAATATAAGAGTGTTTTTGA 59.683 38.462 0.00 0.00 0.00 2.69
2504 5959 6.492254 GGCCCGTAATATAAGAGTGTTTTTG 58.508 40.000 0.00 0.00 0.00 2.44
2505 5960 5.295045 CGGCCCGTAATATAAGAGTGTTTTT 59.705 40.000 0.00 0.00 0.00 1.94
2506 5961 4.812626 CGGCCCGTAATATAAGAGTGTTTT 59.187 41.667 0.00 0.00 0.00 2.43
2507 5962 4.374399 CGGCCCGTAATATAAGAGTGTTT 58.626 43.478 0.00 0.00 0.00 2.83
2508 5963 3.243975 CCGGCCCGTAATATAAGAGTGTT 60.244 47.826 0.85 0.00 0.00 3.32
2509 5964 2.298163 CCGGCCCGTAATATAAGAGTGT 59.702 50.000 0.85 0.00 0.00 3.55
2510 5965 2.559668 TCCGGCCCGTAATATAAGAGTG 59.440 50.000 0.85 0.00 0.00 3.51
2511 5966 2.824341 CTCCGGCCCGTAATATAAGAGT 59.176 50.000 0.85 0.00 0.00 3.24
2512 5967 2.165845 CCTCCGGCCCGTAATATAAGAG 59.834 54.545 0.85 0.00 0.00 2.85
2513 5968 2.173519 CCTCCGGCCCGTAATATAAGA 58.826 52.381 0.85 0.00 0.00 2.10
2514 5969 1.206371 CCCTCCGGCCCGTAATATAAG 59.794 57.143 0.85 0.00 0.00 1.73
2515 5970 1.203162 TCCCTCCGGCCCGTAATATAA 60.203 52.381 0.85 0.00 0.00 0.98
2516 5971 0.409092 TCCCTCCGGCCCGTAATATA 59.591 55.000 0.85 0.00 0.00 0.86
2517 5972 0.903454 CTCCCTCCGGCCCGTAATAT 60.903 60.000 0.85 0.00 0.00 1.28
2518 5973 1.532316 CTCCCTCCGGCCCGTAATA 60.532 63.158 0.85 0.00 0.00 0.98
2519 5974 2.302517 TACTCCCTCCGGCCCGTAAT 62.303 60.000 0.85 0.00 0.00 1.89
2520 5975 2.512986 TTACTCCCTCCGGCCCGTAA 62.513 60.000 0.85 0.00 0.00 3.18
2521 5976 2.302517 ATTACTCCCTCCGGCCCGTA 62.303 60.000 0.85 0.00 0.00 4.02
2522 5977 3.691297 ATTACTCCCTCCGGCCCGT 62.691 63.158 0.85 0.00 0.00 5.28
2523 5978 1.117142 TAATTACTCCCTCCGGCCCG 61.117 60.000 0.00 0.00 0.00 6.13
2524 5979 1.278413 GATAATTACTCCCTCCGGCCC 59.722 57.143 0.00 0.00 0.00 5.80
2525 5980 1.975680 TGATAATTACTCCCTCCGGCC 59.024 52.381 0.00 0.00 0.00 6.13
2526 5981 3.260884 TGATGATAATTACTCCCTCCGGC 59.739 47.826 0.00 0.00 0.00 6.13
2527 5982 5.483685 TTGATGATAATTACTCCCTCCGG 57.516 43.478 0.00 0.00 0.00 5.14
2528 5983 9.672673 ATTATTTGATGATAATTACTCCCTCCG 57.327 33.333 0.00 0.00 30.04 4.63
2586 6041 6.150976 TCGAGGTGCTTGTATTTGAATTCATT 59.849 34.615 9.40 2.85 0.00 2.57
2587 6042 5.647658 TCGAGGTGCTTGTATTTGAATTCAT 59.352 36.000 9.40 0.00 0.00 2.57
2588 6043 5.000591 TCGAGGTGCTTGTATTTGAATTCA 58.999 37.500 3.38 3.38 0.00 2.57
2589 6044 5.545658 TCGAGGTGCTTGTATTTGAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2630 6097 4.669206 TCAACAAACCATCATTGCAAGT 57.331 36.364 4.94 0.00 0.00 3.16
2642 6109 7.084486 GGAATCTTGTTACAGATCAACAAACC 58.916 38.462 10.12 8.09 43.31 3.27
2685 6152 1.605710 ACACATGACAAGTCTTGCTGC 59.394 47.619 12.66 3.42 38.03 5.25
2750 6217 8.511604 AACAATAACATCATCGAGAAAAGGAT 57.488 30.769 0.00 0.00 0.00 3.24
2849 6316 8.134261 TGAACGTCAAAATGAGATCAATTCAAA 58.866 29.630 0.00 0.00 0.00 2.69
2851 6318 7.200778 TGAACGTCAAAATGAGATCAATTCA 57.799 32.000 0.00 0.00 0.00 2.57
2855 6322 5.181811 AGCATGAACGTCAAAATGAGATCAA 59.818 36.000 0.00 0.00 0.00 2.57
2887 6354 3.952508 TCGGCAGGCTGGAGCAAA 61.953 61.111 17.64 0.00 44.36 3.68
2927 6394 8.261492 AGCAAGACTTGTGTATATCTGAAAAG 57.739 34.615 16.39 0.00 0.00 2.27
2942 6409 6.860023 CAGATAAAGTGGAAAAGCAAGACTTG 59.140 38.462 11.02 11.02 39.09 3.16
2943 6410 6.515696 GCAGATAAAGTGGAAAAGCAAGACTT 60.516 38.462 0.00 0.00 41.70 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.