Multiple sequence alignment - TraesCS3D01G257200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G257200 chr3D 100.000 2453 0 0 1 2453 359520040 359522492 0.000000e+00 4530.0
1 TraesCS3D01G257200 chr3D 89.362 470 32 5 26 477 552628671 552629140 2.120000e-160 575.0
2 TraesCS3D01G257200 chr3A 95.104 1062 35 5 859 1904 478951080 478952140 0.000000e+00 1657.0
3 TraesCS3D01G257200 chr3A 90.456 461 30 6 26 472 601604899 601605359 1.620000e-166 595.0
4 TraesCS3D01G257200 chr3A 91.429 175 13 2 699 873 478950701 478950873 3.150000e-59 239.0
5 TraesCS3D01G257200 chr3A 90.110 182 17 1 504 685 478950414 478950594 4.080000e-58 235.0
6 TraesCS3D01G257200 chr3B 92.195 1089 61 12 810 1880 465691541 465692623 0.000000e+00 1519.0
7 TraesCS3D01G257200 chr3B 92.168 1047 66 8 812 1850 465654513 465655551 0.000000e+00 1465.0
8 TraesCS3D01G257200 chr3B 90.833 480 34 8 7 478 257088363 257088840 3.440000e-178 634.0
9 TraesCS3D01G257200 chrUn 95.265 528 19 2 813 1335 360621762 360621236 0.000000e+00 832.0
10 TraesCS3D01G257200 chrUn 89.892 465 30 6 31 480 83598526 83598064 1.260000e-162 582.0
11 TraesCS3D01G257200 chr5B 93.074 462 18 4 26 473 425872661 425873122 0.000000e+00 664.0
12 TraesCS3D01G257200 chr5B 89.918 486 33 6 7 477 276912955 276913439 1.610000e-171 612.0
13 TraesCS3D01G257200 chr7D 91.313 495 27 7 7 486 150763817 150763324 0.000000e+00 662.0
14 TraesCS3D01G257200 chr7D 89.890 455 31 6 7 447 15496818 15497271 2.740000e-159 571.0
15 TraesCS3D01G257200 chr7D 90.821 414 31 3 1905 2312 11018338 11017926 4.610000e-152 547.0
16 TraesCS3D01G257200 chr7D 100.000 29 0 0 1 29 15496796 15496824 1.000000e-03 54.7
17 TraesCS3D01G257200 chr5D 90.554 487 29 8 7 477 243822019 243822504 1.600000e-176 628.0
18 TraesCS3D01G257200 chr5D 93.404 379 22 3 7 384 450699880 450699504 2.130000e-155 558.0
19 TraesCS3D01G257200 chr5D 91.084 415 29 3 1904 2311 59940302 59940715 2.760000e-154 555.0
20 TraesCS3D01G257200 chr5D 90.557 413 33 4 1905 2312 541527646 541528057 2.150000e-150 542.0
21 TraesCS3D01G257200 chr2D 92.029 414 28 4 1902 2312 467889421 467889010 5.880000e-161 577.0
22 TraesCS3D01G257200 chr2D 90.931 408 32 4 1910 2312 6081043 6081450 5.970000e-151 544.0
23 TraesCS3D01G257200 chr2D 90.385 416 30 5 1902 2310 372514523 372514935 2.780000e-149 538.0
24 TraesCS3D01G257200 chr2D 90.049 412 33 6 1906 2312 434339585 434339177 6.010000e-146 527.0
25 TraesCS3D01G257200 chr7A 88.793 464 31 4 31 473 287183419 287182956 1.280000e-152 549.0
26 TraesCS3D01G257200 chr7A 89.958 239 7 6 250 473 669517469 669517705 2.390000e-75 292.0
27 TraesCS3D01G257200 chr6D 89.885 435 33 8 1898 2325 446545140 446544710 1.280000e-152 549.0
28 TraesCS3D01G257200 chr2B 90.557 413 31 6 1905 2310 212179507 212179918 7.720000e-150 540.0
29 TraesCS3D01G257200 chr1A 88.412 466 22 5 26 477 586899697 586899250 1.290000e-147 532.0
30 TraesCS3D01G257200 chr2A 87.907 430 44 5 24 446 771682712 771682284 1.310000e-137 499.0
31 TraesCS3D01G257200 chr6A 86.486 481 30 9 7 472 450092209 450092669 1.690000e-136 496.0
32 TraesCS3D01G257200 chr4D 87.671 73 7 1 727 797 7796533 7796605 1.560000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G257200 chr3D 359520040 359522492 2452 False 4530.000000 4530 100.000000 1 2453 1 chr3D.!!$F1 2452
1 TraesCS3D01G257200 chr3A 478950414 478952140 1726 False 710.333333 1657 92.214333 504 1904 3 chr3A.!!$F2 1400
2 TraesCS3D01G257200 chr3B 465691541 465692623 1082 False 1519.000000 1519 92.195000 810 1880 1 chr3B.!!$F3 1070
3 TraesCS3D01G257200 chr3B 465654513 465655551 1038 False 1465.000000 1465 92.168000 812 1850 1 chr3B.!!$F2 1038
4 TraesCS3D01G257200 chrUn 360621236 360621762 526 True 832.000000 832 95.265000 813 1335 1 chrUn.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.031314 CGAGGTCAGATGGTCCATCG 59.969 60.0 23.38 18.28 44.67 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2237 0.250989 TGTTCACCAAATCCGGGTCC 60.251 55.0 0.0 0.0 36.19 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.933064 GGTCGCCGCCGATCTGAG 62.933 72.222 0.00 0.00 46.38 3.35
29 30 4.957684 CGATCTGAGCCGCCGCAT 62.958 66.667 0.00 0.00 37.52 4.73
30 31 3.040763 GATCTGAGCCGCCGCATC 61.041 66.667 0.00 0.00 37.52 3.91
31 32 4.957684 ATCTGAGCCGCCGCATCG 62.958 66.667 0.00 0.00 37.52 3.84
42 43 4.147449 CGCATCGGCCAGACCAGA 62.147 66.667 2.24 0.00 39.03 3.86
43 44 2.507944 GCATCGGCCAGACCAGAT 59.492 61.111 2.24 0.00 39.03 2.90
44 45 1.596477 GCATCGGCCAGACCAGATC 60.596 63.158 2.24 0.00 39.03 2.75
45 46 2.037620 GCATCGGCCAGACCAGATCT 62.038 60.000 2.24 0.00 39.03 2.75
53 54 3.199290 AGACCAGATCTGTCCGGAG 57.801 57.895 21.11 7.36 35.81 4.63
54 55 0.396417 AGACCAGATCTGTCCGGAGG 60.396 60.000 21.11 2.55 43.87 4.30
66 67 4.868026 CGGAGGACAAACCACACA 57.132 55.556 0.00 0.00 42.04 3.72
67 68 3.322514 CGGAGGACAAACCACACAT 57.677 52.632 0.00 0.00 42.04 3.21
68 69 0.874390 CGGAGGACAAACCACACATG 59.126 55.000 0.00 0.00 42.04 3.21
91 92 4.678743 GACCCAACCACCAGGCCC 62.679 72.222 0.00 0.00 39.06 5.80
93 94 2.938798 CCCAACCACCAGGCCCTA 60.939 66.667 0.00 0.00 39.06 3.53
94 95 2.316586 CCCAACCACCAGGCCCTAT 61.317 63.158 0.00 0.00 39.06 2.57
95 96 0.991355 CCCAACCACCAGGCCCTATA 60.991 60.000 0.00 0.00 39.06 1.31
96 97 1.149101 CCAACCACCAGGCCCTATAT 58.851 55.000 0.00 0.00 39.06 0.86
97 98 1.202927 CCAACCACCAGGCCCTATATG 60.203 57.143 0.00 0.00 39.06 1.78
98 99 0.478507 AACCACCAGGCCCTATATGC 59.521 55.000 0.00 0.00 39.06 3.14
105 106 4.821935 GCCCTATATGCCACCACC 57.178 61.111 0.00 0.00 0.00 4.61
106 107 1.302511 GCCCTATATGCCACCACCG 60.303 63.158 0.00 0.00 0.00 4.94
107 108 1.302511 CCCTATATGCCACCACCGC 60.303 63.158 0.00 0.00 0.00 5.68
108 109 1.302511 CCTATATGCCACCACCGCC 60.303 63.158 0.00 0.00 0.00 6.13
109 110 1.667830 CTATATGCCACCACCGCCG 60.668 63.158 0.00 0.00 0.00 6.46
110 111 2.094757 CTATATGCCACCACCGCCGA 62.095 60.000 0.00 0.00 0.00 5.54
111 112 1.687297 TATATGCCACCACCGCCGAA 61.687 55.000 0.00 0.00 0.00 4.30
112 113 3.833649 TATATGCCACCACCGCCGAAC 62.834 57.143 0.00 0.00 0.00 3.95
121 122 4.796231 CCGCCGAACCGAGGTCAG 62.796 72.222 0.00 0.00 0.00 3.51
122 123 3.744719 CGCCGAACCGAGGTCAGA 61.745 66.667 0.00 0.00 0.00 3.27
123 124 2.893398 GCCGAACCGAGGTCAGAT 59.107 61.111 0.00 0.00 0.00 2.90
124 125 1.519455 GCCGAACCGAGGTCAGATG 60.519 63.158 0.00 0.00 0.00 2.90
125 126 1.141881 CCGAACCGAGGTCAGATGG 59.858 63.158 0.00 0.00 0.00 3.51
126 127 1.605058 CCGAACCGAGGTCAGATGGT 61.605 60.000 0.00 0.00 35.90 3.55
127 128 0.179134 CGAACCGAGGTCAGATGGTC 60.179 60.000 0.00 0.00 32.37 4.02
128 129 0.175989 GAACCGAGGTCAGATGGTCC 59.824 60.000 0.00 0.00 32.37 4.46
129 130 0.544357 AACCGAGGTCAGATGGTCCA 60.544 55.000 0.00 0.00 32.37 4.02
130 131 0.325671 ACCGAGGTCAGATGGTCCAT 60.326 55.000 3.26 3.26 0.00 3.41
131 132 0.390860 CCGAGGTCAGATGGTCCATC 59.609 60.000 22.47 22.47 40.80 3.51
132 133 0.031314 CGAGGTCAGATGGTCCATCG 59.969 60.000 23.38 18.28 44.67 3.84
133 134 0.249657 GAGGTCAGATGGTCCATCGC 60.250 60.000 23.38 17.41 44.67 4.58
134 135 1.227674 GGTCAGATGGTCCATCGCC 60.228 63.158 23.38 21.43 44.67 5.54
135 136 1.592669 GTCAGATGGTCCATCGCCG 60.593 63.158 23.38 16.63 44.67 6.46
136 137 2.969238 CAGATGGTCCATCGCCGC 60.969 66.667 23.38 2.97 44.67 6.53
137 138 4.241555 AGATGGTCCATCGCCGCC 62.242 66.667 23.38 2.26 44.67 6.13
219 220 4.609018 CGCCACCATCCGCCCTAG 62.609 72.222 0.00 0.00 0.00 3.02
220 221 4.256180 GCCACCATCCGCCCTAGG 62.256 72.222 0.06 0.06 0.00 3.02
221 222 4.256180 CCACCATCCGCCCTAGGC 62.256 72.222 2.05 0.00 46.75 3.93
282 283 2.124570 CCACCAAGGCCAGATCGG 60.125 66.667 5.01 0.00 38.11 4.18
334 335 4.559063 CCCCATGGCGCAGGAGAG 62.559 72.222 10.83 0.00 0.00 3.20
335 336 3.473647 CCCATGGCGCAGGAGAGA 61.474 66.667 10.83 0.00 0.00 3.10
336 337 2.108566 CCATGGCGCAGGAGAGAG 59.891 66.667 10.83 0.00 0.00 3.20
337 338 2.108566 CATGGCGCAGGAGAGAGG 59.891 66.667 10.83 0.00 0.00 3.69
338 339 3.160047 ATGGCGCAGGAGAGAGGG 61.160 66.667 10.83 0.00 0.00 4.30
339 340 3.686098 ATGGCGCAGGAGAGAGGGA 62.686 63.158 10.83 0.00 0.00 4.20
340 341 3.077556 GGCGCAGGAGAGAGGGAA 61.078 66.667 10.83 0.00 0.00 3.97
341 342 2.498726 GCGCAGGAGAGAGGGAAG 59.501 66.667 0.30 0.00 0.00 3.46
342 343 3.087666 GCGCAGGAGAGAGGGAAGG 62.088 68.421 0.30 0.00 0.00 3.46
343 344 2.907236 GCAGGAGAGAGGGAAGGC 59.093 66.667 0.00 0.00 0.00 4.35
344 345 2.741055 GCAGGAGAGAGGGAAGGCC 61.741 68.421 0.00 0.00 0.00 5.19
401 402 2.840102 CGGCAGAGGGAGGGGTAG 60.840 72.222 0.00 0.00 0.00 3.18
402 403 2.696893 GGCAGAGGGAGGGGTAGA 59.303 66.667 0.00 0.00 0.00 2.59
403 404 1.003051 GGCAGAGGGAGGGGTAGAA 59.997 63.158 0.00 0.00 0.00 2.10
404 405 1.051556 GGCAGAGGGAGGGGTAGAAG 61.052 65.000 0.00 0.00 0.00 2.85
405 406 1.051556 GCAGAGGGAGGGGTAGAAGG 61.052 65.000 0.00 0.00 0.00 3.46
406 407 0.637195 CAGAGGGAGGGGTAGAAGGA 59.363 60.000 0.00 0.00 0.00 3.36
407 408 0.637743 AGAGGGAGGGGTAGAAGGAC 59.362 60.000 0.00 0.00 0.00 3.85
408 409 0.756070 GAGGGAGGGGTAGAAGGACG 60.756 65.000 0.00 0.00 0.00 4.79
409 410 1.761271 GGGAGGGGTAGAAGGACGG 60.761 68.421 0.00 0.00 0.00 4.79
410 411 1.761271 GGAGGGGTAGAAGGACGGG 60.761 68.421 0.00 0.00 0.00 5.28
411 412 1.761271 GAGGGGTAGAAGGACGGGG 60.761 68.421 0.00 0.00 0.00 5.73
412 413 2.234246 GAGGGGTAGAAGGACGGGGA 62.234 65.000 0.00 0.00 0.00 4.81
413 414 1.761271 GGGGTAGAAGGACGGGGAG 60.761 68.421 0.00 0.00 0.00 4.30
414 415 2.433146 GGGTAGAAGGACGGGGAGC 61.433 68.421 0.00 0.00 0.00 4.70
415 416 2.433146 GGTAGAAGGACGGGGAGCC 61.433 68.421 0.00 0.00 0.00 4.70
416 417 2.042230 TAGAAGGACGGGGAGCCC 60.042 66.667 0.00 0.00 41.09 5.19
431 432 4.157120 CCCCGGCGACTAGGGTTG 62.157 72.222 9.30 0.00 46.17 3.77
436 437 2.508663 GCGACTAGGGTTGCGTCC 60.509 66.667 0.00 0.00 42.17 4.79
529 530 8.954950 ATCATATCTGAAATCAAACTTCGAGT 57.045 30.769 0.00 0.00 34.37 4.18
566 567 3.386768 TCTTTCTGTTTCGAGGGTCAG 57.613 47.619 0.00 0.00 0.00 3.51
567 568 2.963101 TCTTTCTGTTTCGAGGGTCAGA 59.037 45.455 6.77 6.77 35.54 3.27
568 569 2.814280 TTCTGTTTCGAGGGTCAGAC 57.186 50.000 9.30 0.00 36.80 3.51
569 570 0.596577 TCTGTTTCGAGGGTCAGACG 59.403 55.000 0.00 0.00 32.95 4.18
589 590 8.783093 TCAGACGTTGAATATCAAAACTCATTT 58.217 29.630 0.00 0.00 38.22 2.32
624 625 3.541632 TCTCATTCGTTAAATCCAGGGC 58.458 45.455 0.00 0.00 0.00 5.19
670 671 2.626743 ACGATCTTAGTTGTATCCCCCG 59.373 50.000 0.00 0.00 0.00 5.73
694 695 8.488651 CGTAGGATGTGAACTAAAAACCTAAT 57.511 34.615 0.00 0.00 31.91 1.73
695 696 8.943002 CGTAGGATGTGAACTAAAAACCTAATT 58.057 33.333 0.00 0.00 31.91 1.40
735 829 2.108776 TGCCATTGGGGAGAATATCAGG 59.891 50.000 4.53 0.00 40.01 3.86
744 838 5.546499 TGGGGAGAATATCAGGTAATACCAC 59.454 44.000 12.54 0.00 41.95 4.16
757 851 4.814771 GGTAATACCACCACTTGTATGCTC 59.185 45.833 4.24 0.00 38.42 4.26
781 875 9.533253 CTCCCATGATACCAATTTAAAAATGTC 57.467 33.333 0.00 0.00 0.00 3.06
838 932 1.765904 TGTTTGTCTAGCCAGTCCACA 59.234 47.619 0.00 0.00 0.00 4.17
896 1210 1.535462 CGGGCAACGTTCTGATTTCTT 59.465 47.619 0.00 0.00 37.93 2.52
915 1229 0.454600 TAATGTCGCGACACCTCCTC 59.545 55.000 41.29 13.23 45.05 3.71
1693 2022 9.784531 TTATGGACAAAAAGGCATAAATTTTCA 57.215 25.926 0.00 0.00 0.00 2.69
1727 2059 4.516698 AGTGAAATTCGAGCAATGTCTTGT 59.483 37.500 0.00 0.00 34.69 3.16
1810 2142 8.052748 AGCTGAAATGTCTATATTTTGGTACCA 58.947 33.333 11.60 11.60 30.78 3.25
1906 2239 9.473007 TCATAATTTACATCAAGTTGATTGGGA 57.527 29.630 15.85 0.00 39.54 4.37
1907 2240 9.520204 CATAATTTACATCAAGTTGATTGGGAC 57.480 33.333 15.85 0.00 39.54 4.46
1908 2241 5.975693 TTTACATCAAGTTGATTGGGACC 57.024 39.130 15.85 0.00 39.54 4.46
1909 2242 2.807676 ACATCAAGTTGATTGGGACCC 58.192 47.619 15.85 2.45 39.54 4.46
1910 2243 1.745087 CATCAAGTTGATTGGGACCCG 59.255 52.381 15.85 0.00 39.54 5.28
1911 2244 0.037590 TCAAGTTGATTGGGACCCGG 59.962 55.000 5.91 0.00 39.54 5.73
1912 2245 0.037590 CAAGTTGATTGGGACCCGGA 59.962 55.000 0.73 0.00 35.08 5.14
1913 2246 0.999712 AAGTTGATTGGGACCCGGAT 59.000 50.000 0.73 2.07 0.00 4.18
1914 2247 0.999712 AGTTGATTGGGACCCGGATT 59.000 50.000 0.73 0.00 0.00 3.01
1915 2248 1.357761 AGTTGATTGGGACCCGGATTT 59.642 47.619 0.73 0.00 0.00 2.17
1916 2249 1.476488 GTTGATTGGGACCCGGATTTG 59.524 52.381 0.73 0.00 0.00 2.32
1917 2250 0.033601 TGATTGGGACCCGGATTTGG 60.034 55.000 0.73 0.00 0.00 3.28
1918 2251 0.033503 GATTGGGACCCGGATTTGGT 60.034 55.000 0.73 0.00 39.32 3.67
1919 2252 0.324275 ATTGGGACCCGGATTTGGTG 60.324 55.000 0.73 0.00 35.85 4.17
1920 2253 1.427895 TTGGGACCCGGATTTGGTGA 61.428 55.000 0.73 0.00 35.85 4.02
1921 2254 1.381076 GGGACCCGGATTTGGTGAA 59.619 57.895 0.73 0.00 35.85 3.18
1922 2255 0.963856 GGGACCCGGATTTGGTGAAC 60.964 60.000 0.73 0.00 35.85 3.18
1923 2256 0.250989 GGACCCGGATTTGGTGAACA 60.251 55.000 0.73 0.00 35.85 3.18
1924 2257 1.615919 GGACCCGGATTTGGTGAACAT 60.616 52.381 0.73 0.00 35.85 2.71
1925 2258 1.472480 GACCCGGATTTGGTGAACATG 59.528 52.381 0.73 0.00 35.85 3.21
1926 2259 0.817013 CCCGGATTTGGTGAACATGG 59.183 55.000 0.73 0.00 0.00 3.66
1927 2260 0.817013 CCGGATTTGGTGAACATGGG 59.183 55.000 0.00 0.00 0.00 4.00
1928 2261 1.544724 CGGATTTGGTGAACATGGGT 58.455 50.000 0.00 0.00 0.00 4.51
1929 2262 1.202114 CGGATTTGGTGAACATGGGTG 59.798 52.381 0.00 0.00 0.00 4.61
1930 2263 1.066929 GGATTTGGTGAACATGGGTGC 60.067 52.381 0.00 0.00 0.00 5.01
1931 2264 1.617850 GATTTGGTGAACATGGGTGCA 59.382 47.619 0.00 0.00 0.00 4.57
1934 2267 2.255252 GTGAACATGGGTGCACGC 59.745 61.111 25.75 25.75 43.48 5.34
1935 2268 3.353029 TGAACATGGGTGCACGCG 61.353 61.111 26.42 16.69 0.00 6.01
1936 2269 4.759096 GAACATGGGTGCACGCGC 62.759 66.667 26.42 11.13 39.24 6.86
1945 2278 4.277239 TGCACGCGCACTCTTTAT 57.723 50.000 5.73 0.00 45.36 1.40
1946 2279 3.427309 TGCACGCGCACTCTTTATA 57.573 47.368 5.73 0.00 45.36 0.98
1947 2280 1.715993 TGCACGCGCACTCTTTATAA 58.284 45.000 5.73 0.00 45.36 0.98
1948 2281 2.070028 TGCACGCGCACTCTTTATAAA 58.930 42.857 5.73 0.00 45.36 1.40
1949 2282 2.675844 TGCACGCGCACTCTTTATAAAT 59.324 40.909 5.73 0.00 45.36 1.40
1950 2283 3.866327 TGCACGCGCACTCTTTATAAATA 59.134 39.130 5.73 0.00 45.36 1.40
1951 2284 4.026062 TGCACGCGCACTCTTTATAAATAG 60.026 41.667 5.73 8.61 45.36 1.73
1952 2285 4.025979 GCACGCGCACTCTTTATAAATAGT 60.026 41.667 5.73 9.75 38.36 2.12
1953 2286 5.174398 GCACGCGCACTCTTTATAAATAGTA 59.826 40.000 13.99 0.00 38.36 1.82
1954 2287 6.291955 GCACGCGCACTCTTTATAAATAGTAA 60.292 38.462 13.99 0.00 38.36 2.24
1955 2288 7.614908 CACGCGCACTCTTTATAAATAGTAAA 58.385 34.615 13.99 0.00 0.00 2.01
1956 2289 8.273557 CACGCGCACTCTTTATAAATAGTAAAT 58.726 33.333 13.99 0.00 0.00 1.40
1957 2290 8.823818 ACGCGCACTCTTTATAAATAGTAAATT 58.176 29.630 13.99 0.00 0.00 1.82
1958 2291 9.646336 CGCGCACTCTTTATAAATAGTAAATTT 57.354 29.630 13.99 0.00 0.00 1.82
2027 2360 5.184340 ACATAGTCAACCAGTATACTCGC 57.816 43.478 1.26 0.00 0.00 5.03
2028 2361 4.643334 ACATAGTCAACCAGTATACTCGCA 59.357 41.667 1.26 0.00 0.00 5.10
2029 2362 5.302059 ACATAGTCAACCAGTATACTCGCAT 59.698 40.000 1.26 0.00 0.00 4.73
2030 2363 6.489022 ACATAGTCAACCAGTATACTCGCATA 59.511 38.462 1.26 0.00 0.00 3.14
2031 2364 7.176865 ACATAGTCAACCAGTATACTCGCATAT 59.823 37.037 1.26 0.00 0.00 1.78
2032 2365 5.773575 AGTCAACCAGTATACTCGCATATG 58.226 41.667 1.26 0.00 0.00 1.78
2033 2366 5.535030 AGTCAACCAGTATACTCGCATATGA 59.465 40.000 6.97 0.00 0.00 2.15
2034 2367 6.040504 AGTCAACCAGTATACTCGCATATGAA 59.959 38.462 6.97 0.00 0.00 2.57
2035 2368 6.363626 GTCAACCAGTATACTCGCATATGAAG 59.636 42.308 6.97 5.46 0.00 3.02
2036 2369 6.040504 TCAACCAGTATACTCGCATATGAAGT 59.959 38.462 6.97 11.22 0.00 3.01
2037 2370 6.406692 ACCAGTATACTCGCATATGAAGTT 57.593 37.500 6.97 3.51 0.00 2.66
2038 2371 6.817184 ACCAGTATACTCGCATATGAAGTTT 58.183 36.000 6.97 6.85 0.00 2.66
2039 2372 6.924060 ACCAGTATACTCGCATATGAAGTTTC 59.076 38.462 6.97 3.86 0.00 2.78
2040 2373 6.923508 CCAGTATACTCGCATATGAAGTTTCA 59.076 38.462 6.97 0.00 42.14 2.69
2042 2375 8.430828 CAGTATACTCGCATATGAAGTTTCATG 58.569 37.037 15.72 4.72 46.68 3.07
2043 2376 8.360390 AGTATACTCGCATATGAAGTTTCATGA 58.640 33.333 15.72 0.00 46.68 3.07
2044 2377 8.978539 GTATACTCGCATATGAAGTTTCATGAA 58.021 33.333 15.72 3.38 46.68 2.57
2045 2378 6.355397 ACTCGCATATGAAGTTTCATGAAG 57.645 37.500 15.72 7.74 46.68 3.02
2046 2379 6.108687 ACTCGCATATGAAGTTTCATGAAGA 58.891 36.000 15.72 9.51 46.68 2.87
2047 2380 6.595326 ACTCGCATATGAAGTTTCATGAAGAA 59.405 34.615 15.72 0.00 46.68 2.52
2048 2381 7.119699 ACTCGCATATGAAGTTTCATGAAGAAA 59.880 33.333 15.72 0.00 46.68 2.52
2059 2392 5.550232 TTCATGAAGAAATCACATCCGTG 57.450 39.130 3.38 0.00 41.93 4.94
2060 2393 3.940852 TCATGAAGAAATCACATCCGTGG 59.059 43.478 0.00 0.00 43.79 4.94
2061 2394 3.417069 TGAAGAAATCACATCCGTGGT 57.583 42.857 0.00 0.00 43.79 4.16
2062 2395 4.545208 TGAAGAAATCACATCCGTGGTA 57.455 40.909 0.00 0.00 43.79 3.25
2063 2396 4.900684 TGAAGAAATCACATCCGTGGTAA 58.099 39.130 0.00 0.00 43.79 2.85
2064 2397 5.496556 TGAAGAAATCACATCCGTGGTAAT 58.503 37.500 0.00 0.00 43.79 1.89
2065 2398 5.584649 TGAAGAAATCACATCCGTGGTAATC 59.415 40.000 0.00 0.00 43.79 1.75
2066 2399 5.359194 AGAAATCACATCCGTGGTAATCT 57.641 39.130 0.00 0.00 43.79 2.40
2067 2400 5.118990 AGAAATCACATCCGTGGTAATCTG 58.881 41.667 0.00 0.00 43.79 2.90
2068 2401 2.979814 TCACATCCGTGGTAATCTGG 57.020 50.000 0.00 0.00 43.79 3.86
2069 2402 2.462723 TCACATCCGTGGTAATCTGGA 58.537 47.619 0.00 0.00 43.79 3.86
2070 2403 2.167693 TCACATCCGTGGTAATCTGGAC 59.832 50.000 0.00 0.00 43.79 4.02
2071 2404 2.093711 CACATCCGTGGTAATCTGGACA 60.094 50.000 0.00 0.00 39.64 4.02
2072 2405 2.569853 ACATCCGTGGTAATCTGGACAA 59.430 45.455 0.00 0.00 32.33 3.18
2073 2406 3.008594 ACATCCGTGGTAATCTGGACAAA 59.991 43.478 0.00 0.00 32.33 2.83
2074 2407 3.773418 TCCGTGGTAATCTGGACAAAA 57.227 42.857 0.00 0.00 0.00 2.44
2075 2408 4.088056 TCCGTGGTAATCTGGACAAAAA 57.912 40.909 0.00 0.00 0.00 1.94
2076 2409 4.658063 TCCGTGGTAATCTGGACAAAAAT 58.342 39.130 0.00 0.00 0.00 1.82
2077 2410 4.457603 TCCGTGGTAATCTGGACAAAAATG 59.542 41.667 0.00 0.00 0.00 2.32
2078 2411 4.457603 CCGTGGTAATCTGGACAAAAATGA 59.542 41.667 0.00 0.00 0.00 2.57
2079 2412 5.390613 CGTGGTAATCTGGACAAAAATGAC 58.609 41.667 0.00 0.00 0.00 3.06
2080 2413 5.049060 CGTGGTAATCTGGACAAAAATGACA 60.049 40.000 0.00 0.00 0.00 3.58
2081 2414 6.514212 CGTGGTAATCTGGACAAAAATGACAA 60.514 38.462 0.00 0.00 0.00 3.18
2082 2415 7.206687 GTGGTAATCTGGACAAAAATGACAAA 58.793 34.615 0.00 0.00 0.00 2.83
2083 2416 7.708752 GTGGTAATCTGGACAAAAATGACAAAA 59.291 33.333 0.00 0.00 0.00 2.44
2084 2417 8.428063 TGGTAATCTGGACAAAAATGACAAAAT 58.572 29.630 0.00 0.00 0.00 1.82
2085 2418 8.925700 GGTAATCTGGACAAAAATGACAAAATC 58.074 33.333 0.00 0.00 0.00 2.17
2086 2419 7.642071 AATCTGGACAAAAATGACAAAATCG 57.358 32.000 0.00 0.00 0.00 3.34
2087 2420 6.384258 TCTGGACAAAAATGACAAAATCGA 57.616 33.333 0.00 0.00 0.00 3.59
2088 2421 6.800543 TCTGGACAAAAATGACAAAATCGAA 58.199 32.000 0.00 0.00 0.00 3.71
2089 2422 6.917477 TCTGGACAAAAATGACAAAATCGAAG 59.083 34.615 0.00 0.00 0.00 3.79
2090 2423 5.461737 TGGACAAAAATGACAAAATCGAAGC 59.538 36.000 0.00 0.00 0.00 3.86
2091 2424 5.691754 GGACAAAAATGACAAAATCGAAGCT 59.308 36.000 0.00 0.00 0.00 3.74
2092 2425 6.861055 GGACAAAAATGACAAAATCGAAGCTA 59.139 34.615 0.00 0.00 0.00 3.32
2093 2426 7.542130 GGACAAAAATGACAAAATCGAAGCTAT 59.458 33.333 0.00 0.00 0.00 2.97
2094 2427 9.554724 GACAAAAATGACAAAATCGAAGCTATA 57.445 29.630 0.00 0.00 0.00 1.31
2125 2458 9.730420 AAAACATCGTTTAATGAATAGTATGGC 57.270 29.630 0.00 0.00 0.00 4.40
2126 2459 7.435068 ACATCGTTTAATGAATAGTATGGCC 57.565 36.000 0.00 0.00 0.00 5.36
2127 2460 6.147164 ACATCGTTTAATGAATAGTATGGCCG 59.853 38.462 0.00 0.00 0.00 6.13
2128 2461 4.449743 TCGTTTAATGAATAGTATGGCCGC 59.550 41.667 0.00 0.00 0.00 6.53
2129 2462 4.212425 CGTTTAATGAATAGTATGGCCGCA 59.788 41.667 0.00 0.00 0.00 5.69
2130 2463 5.106712 CGTTTAATGAATAGTATGGCCGCAT 60.107 40.000 0.00 0.00 0.00 4.73
2131 2464 6.567701 CGTTTAATGAATAGTATGGCCGCATT 60.568 38.462 0.00 0.00 0.00 3.56
2132 2465 6.892658 TTAATGAATAGTATGGCCGCATTT 57.107 33.333 0.00 0.00 0.00 2.32
2133 2466 4.771590 ATGAATAGTATGGCCGCATTTG 57.228 40.909 0.00 0.00 0.00 2.32
2134 2467 3.550820 TGAATAGTATGGCCGCATTTGT 58.449 40.909 0.00 0.00 0.00 2.83
2135 2468 4.709250 TGAATAGTATGGCCGCATTTGTA 58.291 39.130 0.00 0.00 0.00 2.41
2136 2469 5.312895 TGAATAGTATGGCCGCATTTGTAT 58.687 37.500 0.00 0.00 0.00 2.29
2137 2470 5.767665 TGAATAGTATGGCCGCATTTGTATT 59.232 36.000 0.00 0.00 0.00 1.89
2138 2471 6.264292 TGAATAGTATGGCCGCATTTGTATTT 59.736 34.615 0.00 0.00 0.00 1.40
2139 2472 6.648879 ATAGTATGGCCGCATTTGTATTTT 57.351 33.333 0.00 0.00 0.00 1.82
2140 2473 4.932146 AGTATGGCCGCATTTGTATTTTC 58.068 39.130 0.00 0.00 0.00 2.29
2141 2474 4.644685 AGTATGGCCGCATTTGTATTTTCT 59.355 37.500 0.00 0.00 0.00 2.52
2142 2475 3.951775 TGGCCGCATTTGTATTTTCTT 57.048 38.095 0.00 0.00 0.00 2.52
2143 2476 3.843999 TGGCCGCATTTGTATTTTCTTC 58.156 40.909 0.00 0.00 0.00 2.87
2144 2477 3.256879 TGGCCGCATTTGTATTTTCTTCA 59.743 39.130 0.00 0.00 0.00 3.02
2145 2478 3.612423 GGCCGCATTTGTATTTTCTTCAC 59.388 43.478 0.00 0.00 0.00 3.18
2146 2479 4.485163 GCCGCATTTGTATTTTCTTCACT 58.515 39.130 0.00 0.00 0.00 3.41
2147 2480 5.392595 GGCCGCATTTGTATTTTCTTCACTA 60.393 40.000 0.00 0.00 0.00 2.74
2148 2481 6.090129 GCCGCATTTGTATTTTCTTCACTAA 58.910 36.000 0.00 0.00 0.00 2.24
2149 2482 6.251376 GCCGCATTTGTATTTTCTTCACTAAG 59.749 38.462 0.00 0.00 0.00 2.18
2150 2483 7.526608 CCGCATTTGTATTTTCTTCACTAAGA 58.473 34.615 0.00 0.00 40.03 2.10
2161 2494 6.540438 TTCTTCACTAAGAATACGATGGGT 57.460 37.500 0.00 0.00 44.85 4.51
2162 2495 5.902681 TCTTCACTAAGAATACGATGGGTG 58.097 41.667 0.00 0.00 38.81 4.61
2163 2496 5.421056 TCTTCACTAAGAATACGATGGGTGT 59.579 40.000 0.00 0.00 38.81 4.16
2164 2497 5.258456 TCACTAAGAATACGATGGGTGTC 57.742 43.478 0.00 0.00 0.00 3.67
2165 2498 4.707934 TCACTAAGAATACGATGGGTGTCA 59.292 41.667 0.00 0.00 0.00 3.58
2166 2499 5.186215 TCACTAAGAATACGATGGGTGTCAA 59.814 40.000 0.00 0.00 0.00 3.18
2167 2500 6.049149 CACTAAGAATACGATGGGTGTCAAT 58.951 40.000 0.00 0.00 0.00 2.57
2168 2501 7.068962 TCACTAAGAATACGATGGGTGTCAATA 59.931 37.037 0.00 0.00 0.00 1.90
2169 2502 7.169308 CACTAAGAATACGATGGGTGTCAATAC 59.831 40.741 0.00 0.00 0.00 1.89
2170 2503 5.607939 AGAATACGATGGGTGTCAATACA 57.392 39.130 0.00 0.00 0.00 2.29
2171 2504 6.174720 AGAATACGATGGGTGTCAATACAT 57.825 37.500 0.00 0.00 38.08 2.29
2172 2505 6.223852 AGAATACGATGGGTGTCAATACATC 58.776 40.000 0.00 0.00 38.08 3.06
2173 2506 3.904800 ACGATGGGTGTCAATACATCA 57.095 42.857 11.13 0.00 38.58 3.07
2174 2507 4.422073 ACGATGGGTGTCAATACATCAT 57.578 40.909 11.13 0.00 38.58 2.45
2175 2508 4.129380 ACGATGGGTGTCAATACATCATG 58.871 43.478 11.13 0.00 38.58 3.07
2176 2509 4.141733 ACGATGGGTGTCAATACATCATGA 60.142 41.667 0.00 0.00 38.58 3.07
2177 2510 4.815846 CGATGGGTGTCAATACATCATGAA 59.184 41.667 0.00 0.00 38.58 2.57
2178 2511 5.296531 CGATGGGTGTCAATACATCATGAAA 59.703 40.000 0.00 0.00 38.58 2.69
2179 2512 5.895636 TGGGTGTCAATACATCATGAAAC 57.104 39.130 0.00 0.00 38.58 2.78
2180 2513 5.569355 TGGGTGTCAATACATCATGAAACT 58.431 37.500 0.00 0.00 38.58 2.66
2181 2514 6.009589 TGGGTGTCAATACATCATGAAACTT 58.990 36.000 0.00 0.00 38.58 2.66
2182 2515 6.150976 TGGGTGTCAATACATCATGAAACTTC 59.849 38.462 0.00 0.00 38.58 3.01
2183 2516 6.150976 GGGTGTCAATACATCATGAAACTTCA 59.849 38.462 0.00 0.00 38.58 3.02
2184 2517 7.023575 GGTGTCAATACATCATGAAACTTCAC 58.976 38.462 0.00 2.74 37.76 3.18
2185 2518 7.308529 GGTGTCAATACATCATGAAACTTCACA 60.309 37.037 0.00 0.00 37.76 3.58
2186 2519 7.535258 GTGTCAATACATCATGAAACTTCACAC 59.465 37.037 0.00 4.57 37.76 3.82
2187 2520 6.738200 GTCAATACATCATGAAACTTCACACG 59.262 38.462 0.00 0.00 40.49 4.49
2188 2521 6.426633 TCAATACATCATGAAACTTCACACGT 59.573 34.615 0.00 0.00 40.49 4.49
2189 2522 4.472691 ACATCATGAAACTTCACACGTG 57.527 40.909 15.48 15.48 40.49 4.49
2190 2523 4.126437 ACATCATGAAACTTCACACGTGA 58.874 39.130 25.01 0.00 40.49 4.35
2191 2524 4.212004 ACATCATGAAACTTCACACGTGAG 59.788 41.667 25.01 15.63 41.13 3.51
2192 2525 3.792401 TCATGAAACTTCACACGTGAGT 58.208 40.909 25.01 12.85 42.05 3.41
2193 2526 4.939271 TCATGAAACTTCACACGTGAGTA 58.061 39.130 25.01 7.42 41.12 2.59
2194 2527 4.982295 TCATGAAACTTCACACGTGAGTAG 59.018 41.667 25.01 19.68 41.12 2.57
2195 2528 4.642445 TGAAACTTCACACGTGAGTAGA 57.358 40.909 25.01 11.34 41.13 2.59
2196 2529 5.001237 TGAAACTTCACACGTGAGTAGAA 57.999 39.130 25.01 17.65 41.13 2.10
2197 2530 5.597806 TGAAACTTCACACGTGAGTAGAAT 58.402 37.500 25.01 11.44 41.13 2.40
2198 2531 5.462068 TGAAACTTCACACGTGAGTAGAATG 59.538 40.000 25.01 8.23 41.13 2.67
2199 2532 6.681865 TGAAACTTCACACGTGAGTAGAATGA 60.682 38.462 25.01 10.74 41.13 2.57
2200 2533 7.950963 TGAAACTTCACACGTGAGTAGAATGAT 60.951 37.037 25.01 8.72 41.13 2.45
2212 2545 5.508200 AGTAGAATGATCGACTCAGGTTC 57.492 43.478 0.00 0.00 36.94 3.62
2213 2546 4.950475 AGTAGAATGATCGACTCAGGTTCA 59.050 41.667 0.00 0.00 36.94 3.18
2214 2547 5.596361 AGTAGAATGATCGACTCAGGTTCAT 59.404 40.000 0.00 0.00 36.94 2.57
2215 2548 6.773200 AGTAGAATGATCGACTCAGGTTCATA 59.227 38.462 0.00 0.00 36.94 2.15
2216 2549 5.837437 AGAATGATCGACTCAGGTTCATAC 58.163 41.667 0.00 0.00 37.28 2.39
2217 2550 4.592485 ATGATCGACTCAGGTTCATACC 57.408 45.455 0.00 0.00 45.39 2.73
2233 2566 8.474006 GGTTCATACCGCAAAATTTTAGAATT 57.526 30.769 2.44 0.00 34.24 2.17
2234 2567 8.931775 GGTTCATACCGCAAAATTTTAGAATTT 58.068 29.630 2.44 0.00 39.51 1.82
2235 2568 9.739786 GTTCATACCGCAAAATTTTAGAATTTG 57.260 29.630 2.44 0.00 42.97 2.32
2236 2569 9.482627 TTCATACCGCAAAATTTTAGAATTTGT 57.517 25.926 2.44 2.13 42.97 2.83
2237 2570 9.482627 TCATACCGCAAAATTTTAGAATTTGTT 57.517 25.926 2.44 0.00 42.97 2.83
2279 2612 8.795842 TTTATGAATTTACTATTCACGTGGGT 57.204 30.769 17.00 11.87 40.37 4.51
2280 2613 6.677781 ATGAATTTACTATTCACGTGGGTG 57.322 37.500 17.00 6.47 45.78 4.61
2281 2614 4.393680 TGAATTTACTATTCACGTGGGTGC 59.606 41.667 17.00 1.35 44.03 5.01
2282 2615 1.999048 TTACTATTCACGTGGGTGCG 58.001 50.000 17.00 3.60 44.03 5.34
2283 2616 0.458889 TACTATTCACGTGGGTGCGC 60.459 55.000 17.00 0.00 44.03 6.09
2284 2617 2.798501 CTATTCACGTGGGTGCGCG 61.799 63.158 17.00 0.00 44.03 6.86
2297 2630 4.759096 GCGCGCACACCCATGTTC 62.759 66.667 29.10 0.00 36.72 3.18
2298 2631 3.353029 CGCGCACACCCATGTTCA 61.353 61.111 8.75 0.00 36.72 3.18
2299 2632 2.255252 GCGCACACCCATGTTCAC 59.745 61.111 0.30 0.00 36.72 3.18
2300 2633 2.953821 CGCACACCCATGTTCACC 59.046 61.111 0.00 0.00 36.72 4.02
2301 2634 1.600636 CGCACACCCATGTTCACCT 60.601 57.895 0.00 0.00 36.72 4.00
2302 2635 1.172180 CGCACACCCATGTTCACCTT 61.172 55.000 0.00 0.00 36.72 3.50
2303 2636 1.039856 GCACACCCATGTTCACCTTT 58.960 50.000 0.00 0.00 36.72 3.11
2304 2637 1.269726 GCACACCCATGTTCACCTTTG 60.270 52.381 0.00 0.00 36.72 2.77
2305 2638 2.031120 CACACCCATGTTCACCTTTGT 58.969 47.619 0.00 0.00 36.72 2.83
2306 2639 3.218453 CACACCCATGTTCACCTTTGTA 58.782 45.455 0.00 0.00 36.72 2.41
2307 2640 3.826157 CACACCCATGTTCACCTTTGTAT 59.174 43.478 0.00 0.00 36.72 2.29
2308 2641 4.280677 CACACCCATGTTCACCTTTGTATT 59.719 41.667 0.00 0.00 36.72 1.89
2309 2642 4.898861 ACACCCATGTTCACCTTTGTATTT 59.101 37.500 0.00 0.00 34.46 1.40
2310 2643 5.365314 ACACCCATGTTCACCTTTGTATTTT 59.635 36.000 0.00 0.00 34.46 1.82
2311 2644 5.925969 CACCCATGTTCACCTTTGTATTTTC 59.074 40.000 0.00 0.00 0.00 2.29
2312 2645 5.600484 ACCCATGTTCACCTTTGTATTTTCA 59.400 36.000 0.00 0.00 0.00 2.69
2313 2646 6.098982 ACCCATGTTCACCTTTGTATTTTCAA 59.901 34.615 0.00 0.00 0.00 2.69
2314 2647 6.646240 CCCATGTTCACCTTTGTATTTTCAAG 59.354 38.462 0.00 0.00 0.00 3.02
2315 2648 7.209475 CCATGTTCACCTTTGTATTTTCAAGT 58.791 34.615 0.00 0.00 0.00 3.16
2316 2649 7.710475 CCATGTTCACCTTTGTATTTTCAAGTT 59.290 33.333 0.00 0.00 0.00 2.66
2317 2650 8.542132 CATGTTCACCTTTGTATTTTCAAGTTG 58.458 33.333 0.00 0.00 0.00 3.16
2318 2651 7.831753 TGTTCACCTTTGTATTTTCAAGTTGA 58.168 30.769 0.08 0.08 0.00 3.18
2319 2652 8.474025 TGTTCACCTTTGTATTTTCAAGTTGAT 58.526 29.630 6.36 0.00 0.00 2.57
2320 2653 9.313118 GTTCACCTTTGTATTTTCAAGTTGATT 57.687 29.630 6.36 0.00 0.00 2.57
2321 2654 8.870160 TCACCTTTGTATTTTCAAGTTGATTG 57.130 30.769 6.36 0.00 40.52 2.67
2322 2655 8.474025 TCACCTTTGTATTTTCAAGTTGATTGT 58.526 29.630 6.36 0.00 40.05 2.71
2323 2656 9.097257 CACCTTTGTATTTTCAAGTTGATTGTT 57.903 29.630 6.36 0.00 40.05 2.83
2335 2668 9.461312 TTCAAGTTGATTGTTACTATATTGGCT 57.539 29.630 6.36 0.00 40.05 4.75
2343 2676 9.517609 GATTGTTACTATATTGGCTATAGGTCG 57.482 37.037 1.04 0.00 42.49 4.79
2344 2677 8.413309 TTGTTACTATATTGGCTATAGGTCGT 57.587 34.615 1.04 0.00 42.49 4.34
2345 2678 7.823665 TGTTACTATATTGGCTATAGGTCGTG 58.176 38.462 1.04 0.00 42.49 4.35
2346 2679 7.666804 TGTTACTATATTGGCTATAGGTCGTGA 59.333 37.037 1.04 0.00 42.49 4.35
2347 2680 8.517878 GTTACTATATTGGCTATAGGTCGTGAA 58.482 37.037 1.04 0.00 42.49 3.18
2348 2681 7.719871 ACTATATTGGCTATAGGTCGTGAAT 57.280 36.000 1.04 0.00 42.49 2.57
2349 2682 8.818622 ACTATATTGGCTATAGGTCGTGAATA 57.181 34.615 1.04 0.00 42.49 1.75
2350 2683 8.904834 ACTATATTGGCTATAGGTCGTGAATAG 58.095 37.037 1.04 0.00 42.49 1.73
2351 2684 7.719871 ATATTGGCTATAGGTCGTGAATAGT 57.280 36.000 1.04 0.00 0.00 2.12
2352 2685 4.848562 TGGCTATAGGTCGTGAATAGTG 57.151 45.455 1.04 0.00 0.00 2.74
2353 2686 4.466827 TGGCTATAGGTCGTGAATAGTGA 58.533 43.478 1.04 0.00 0.00 3.41
2354 2687 4.891168 TGGCTATAGGTCGTGAATAGTGAA 59.109 41.667 1.04 0.00 0.00 3.18
2355 2688 5.538813 TGGCTATAGGTCGTGAATAGTGAAT 59.461 40.000 1.04 0.00 0.00 2.57
2356 2689 6.094061 GGCTATAGGTCGTGAATAGTGAATC 58.906 44.000 1.04 0.00 0.00 2.52
2357 2690 6.094061 GCTATAGGTCGTGAATAGTGAATCC 58.906 44.000 1.04 0.00 0.00 3.01
2358 2691 6.071840 GCTATAGGTCGTGAATAGTGAATCCT 60.072 42.308 1.04 0.00 0.00 3.24
2359 2692 7.120873 GCTATAGGTCGTGAATAGTGAATCCTA 59.879 40.741 1.04 0.00 0.00 2.94
2360 2693 9.179909 CTATAGGTCGTGAATAGTGAATCCTAT 57.820 37.037 0.00 0.00 38.64 2.57
2361 2694 6.334102 AGGTCGTGAATAGTGAATCCTATC 57.666 41.667 0.00 0.00 0.00 2.08
2362 2695 6.071984 AGGTCGTGAATAGTGAATCCTATCT 58.928 40.000 0.00 0.00 0.00 1.98
2363 2696 6.551601 AGGTCGTGAATAGTGAATCCTATCTT 59.448 38.462 0.00 0.00 0.00 2.40
2364 2697 7.070074 AGGTCGTGAATAGTGAATCCTATCTTT 59.930 37.037 0.00 0.00 0.00 2.52
2365 2698 7.382759 GGTCGTGAATAGTGAATCCTATCTTTC 59.617 40.741 0.00 0.00 0.00 2.62
2366 2699 8.138712 GTCGTGAATAGTGAATCCTATCTTTCT 58.861 37.037 0.00 0.00 0.00 2.52
2367 2700 8.353684 TCGTGAATAGTGAATCCTATCTTTCTC 58.646 37.037 0.00 0.00 0.00 2.87
2368 2701 7.324856 CGTGAATAGTGAATCCTATCTTTCTCG 59.675 40.741 0.00 0.00 0.00 4.04
2369 2702 7.596995 GTGAATAGTGAATCCTATCTTTCTCGG 59.403 40.741 0.00 0.00 0.00 4.63
2370 2703 4.946478 AGTGAATCCTATCTTTCTCGGG 57.054 45.455 0.00 0.00 0.00 5.14
2371 2704 4.290942 AGTGAATCCTATCTTTCTCGGGT 58.709 43.478 0.00 0.00 0.00 5.28
2372 2705 4.717280 AGTGAATCCTATCTTTCTCGGGTT 59.283 41.667 0.00 0.00 0.00 4.11
2373 2706 5.189934 AGTGAATCCTATCTTTCTCGGGTTT 59.810 40.000 0.00 0.00 0.00 3.27
2374 2707 5.294552 GTGAATCCTATCTTTCTCGGGTTTG 59.705 44.000 0.00 0.00 0.00 2.93
2375 2708 5.045869 TGAATCCTATCTTTCTCGGGTTTGT 60.046 40.000 0.00 0.00 0.00 2.83
2376 2709 4.903045 TCCTATCTTTCTCGGGTTTGTT 57.097 40.909 0.00 0.00 0.00 2.83
2377 2710 6.555463 ATCCTATCTTTCTCGGGTTTGTTA 57.445 37.500 0.00 0.00 0.00 2.41
2378 2711 6.555463 TCCTATCTTTCTCGGGTTTGTTAT 57.445 37.500 0.00 0.00 0.00 1.89
2379 2712 7.664552 TCCTATCTTTCTCGGGTTTGTTATA 57.335 36.000 0.00 0.00 0.00 0.98
2380 2713 7.495055 TCCTATCTTTCTCGGGTTTGTTATAC 58.505 38.462 0.00 0.00 0.00 1.47
2381 2714 6.704937 CCTATCTTTCTCGGGTTTGTTATACC 59.295 42.308 0.00 0.00 34.82 2.73
2383 2716 2.298411 TCTCGGGTTTGTTATACCGC 57.702 50.000 0.00 0.00 45.58 5.68
2384 2717 1.826720 TCTCGGGTTTGTTATACCGCT 59.173 47.619 0.00 0.00 45.58 5.52
2385 2718 3.023119 TCTCGGGTTTGTTATACCGCTA 58.977 45.455 0.00 0.00 45.58 4.26
2386 2719 3.118542 CTCGGGTTTGTTATACCGCTAC 58.881 50.000 0.00 0.00 45.58 3.58
2387 2720 2.760092 TCGGGTTTGTTATACCGCTACT 59.240 45.455 0.00 0.00 45.58 2.57
2388 2721 3.195396 TCGGGTTTGTTATACCGCTACTT 59.805 43.478 0.00 0.00 45.58 2.24
2389 2722 3.307782 CGGGTTTGTTATACCGCTACTTG 59.692 47.826 0.00 0.00 39.85 3.16
2390 2723 3.624410 GGGTTTGTTATACCGCTACTTGG 59.376 47.826 0.00 0.00 36.49 3.61
2391 2724 4.506758 GGTTTGTTATACCGCTACTTGGA 58.493 43.478 0.00 0.00 0.00 3.53
2392 2725 5.121105 GGTTTGTTATACCGCTACTTGGAT 58.879 41.667 0.00 0.00 0.00 3.41
2393 2726 5.587443 GGTTTGTTATACCGCTACTTGGATT 59.413 40.000 0.00 0.00 0.00 3.01
2394 2727 6.238293 GGTTTGTTATACCGCTACTTGGATTC 60.238 42.308 0.00 0.00 0.00 2.52
2395 2728 5.864418 TGTTATACCGCTACTTGGATTCT 57.136 39.130 0.00 0.00 0.00 2.40
2396 2729 5.597806 TGTTATACCGCTACTTGGATTCTG 58.402 41.667 0.00 0.00 0.00 3.02
2397 2730 2.596904 TACCGCTACTTGGATTCTGC 57.403 50.000 0.00 0.00 0.00 4.26
2398 2731 0.905357 ACCGCTACTTGGATTCTGCT 59.095 50.000 0.00 0.00 0.00 4.24
2399 2732 1.279271 ACCGCTACTTGGATTCTGCTT 59.721 47.619 0.00 0.00 0.00 3.91
2400 2733 1.936547 CCGCTACTTGGATTCTGCTTC 59.063 52.381 0.00 0.00 0.00 3.86
2401 2734 2.621338 CGCTACTTGGATTCTGCTTCA 58.379 47.619 0.00 0.00 0.00 3.02
2402 2735 2.606725 CGCTACTTGGATTCTGCTTCAG 59.393 50.000 0.00 0.00 0.00 3.02
2403 2736 3.604582 GCTACTTGGATTCTGCTTCAGT 58.395 45.455 0.00 0.00 32.61 3.41
2404 2737 4.006319 GCTACTTGGATTCTGCTTCAGTT 58.994 43.478 0.00 0.00 32.61 3.16
2405 2738 4.457257 GCTACTTGGATTCTGCTTCAGTTT 59.543 41.667 0.00 0.00 32.61 2.66
2406 2739 4.843220 ACTTGGATTCTGCTTCAGTTTG 57.157 40.909 0.00 0.00 32.61 2.93
2407 2740 4.210331 ACTTGGATTCTGCTTCAGTTTGT 58.790 39.130 0.00 0.00 32.61 2.83
2408 2741 4.646492 ACTTGGATTCTGCTTCAGTTTGTT 59.354 37.500 0.00 0.00 32.61 2.83
2409 2742 4.572985 TGGATTCTGCTTCAGTTTGTTG 57.427 40.909 0.00 0.00 32.61 3.33
2410 2743 3.318839 TGGATTCTGCTTCAGTTTGTTGG 59.681 43.478 0.00 0.00 32.61 3.77
2411 2744 3.319122 GGATTCTGCTTCAGTTTGTTGGT 59.681 43.478 0.00 0.00 32.61 3.67
2412 2745 4.518970 GGATTCTGCTTCAGTTTGTTGGTA 59.481 41.667 0.00 0.00 32.61 3.25
2413 2746 5.335191 GGATTCTGCTTCAGTTTGTTGGTAG 60.335 44.000 0.00 0.00 32.61 3.18
2414 2747 2.878406 TCTGCTTCAGTTTGTTGGTAGC 59.122 45.455 0.00 0.00 32.61 3.58
2415 2748 2.880890 CTGCTTCAGTTTGTTGGTAGCT 59.119 45.455 0.00 0.00 31.67 3.32
2416 2749 3.287222 TGCTTCAGTTTGTTGGTAGCTT 58.713 40.909 0.00 0.00 31.67 3.74
2417 2750 3.315191 TGCTTCAGTTTGTTGGTAGCTTC 59.685 43.478 0.00 0.00 31.67 3.86
2418 2751 3.304726 GCTTCAGTTTGTTGGTAGCTTCC 60.305 47.826 1.68 1.68 0.00 3.46
2419 2752 3.569194 TCAGTTTGTTGGTAGCTTCCA 57.431 42.857 8.18 8.18 35.49 3.53
2420 2753 4.098914 TCAGTTTGTTGGTAGCTTCCAT 57.901 40.909 13.41 0.00 37.33 3.41
2421 2754 4.469657 TCAGTTTGTTGGTAGCTTCCATT 58.530 39.130 13.41 0.00 37.33 3.16
2422 2755 4.278170 TCAGTTTGTTGGTAGCTTCCATTG 59.722 41.667 13.41 5.73 37.33 2.82
2423 2756 4.278170 CAGTTTGTTGGTAGCTTCCATTGA 59.722 41.667 13.41 0.00 37.33 2.57
2424 2757 4.278419 AGTTTGTTGGTAGCTTCCATTGAC 59.722 41.667 13.41 9.14 37.33 3.18
2425 2758 3.500448 TGTTGGTAGCTTCCATTGACA 57.500 42.857 13.41 11.68 37.33 3.58
2426 2759 3.146066 TGTTGGTAGCTTCCATTGACAC 58.854 45.455 13.41 8.42 37.33 3.67
2427 2760 3.181445 TGTTGGTAGCTTCCATTGACACT 60.181 43.478 13.41 0.00 37.33 3.55
2428 2761 4.041075 TGTTGGTAGCTTCCATTGACACTA 59.959 41.667 13.41 0.00 37.33 2.74
2429 2762 4.202245 TGGTAGCTTCCATTGACACTAC 57.798 45.455 8.18 0.00 32.25 2.73
2430 2763 3.838317 TGGTAGCTTCCATTGACACTACT 59.162 43.478 8.18 0.00 33.02 2.57
2431 2764 4.286032 TGGTAGCTTCCATTGACACTACTT 59.714 41.667 8.18 0.00 33.02 2.24
2432 2765 4.631813 GGTAGCTTCCATTGACACTACTTG 59.368 45.833 4.19 0.00 33.02 3.16
2433 2766 3.679389 AGCTTCCATTGACACTACTTGG 58.321 45.455 0.00 0.00 0.00 3.61
2434 2767 2.162408 GCTTCCATTGACACTACTTGGC 59.838 50.000 0.00 0.00 0.00 4.52
2435 2768 2.093306 TCCATTGACACTACTTGGCG 57.907 50.000 0.00 0.00 34.92 5.69
2436 2769 0.447801 CCATTGACACTACTTGGCGC 59.552 55.000 0.00 0.00 34.92 6.53
2437 2770 1.155889 CATTGACACTACTTGGCGCA 58.844 50.000 10.83 0.00 34.92 6.09
2438 2771 1.739466 CATTGACACTACTTGGCGCAT 59.261 47.619 10.83 0.00 34.92 4.73
2439 2772 2.753055 TTGACACTACTTGGCGCATA 57.247 45.000 10.83 0.00 34.92 3.14
2440 2773 2.979814 TGACACTACTTGGCGCATAT 57.020 45.000 10.83 0.00 34.92 1.78
2441 2774 4.394439 TTGACACTACTTGGCGCATATA 57.606 40.909 10.83 0.00 34.92 0.86
2442 2775 4.600692 TGACACTACTTGGCGCATATAT 57.399 40.909 10.83 0.00 34.92 0.86
2443 2776 4.556233 TGACACTACTTGGCGCATATATC 58.444 43.478 10.83 0.00 34.92 1.63
2444 2777 4.280929 TGACACTACTTGGCGCATATATCT 59.719 41.667 10.83 0.00 34.92 1.98
2445 2778 5.215252 ACACTACTTGGCGCATATATCTT 57.785 39.130 10.83 0.00 0.00 2.40
2446 2779 5.230942 ACACTACTTGGCGCATATATCTTC 58.769 41.667 10.83 0.00 0.00 2.87
2447 2780 5.011125 ACACTACTTGGCGCATATATCTTCT 59.989 40.000 10.83 0.00 0.00 2.85
2448 2781 5.574830 CACTACTTGGCGCATATATCTTCTC 59.425 44.000 10.83 0.00 0.00 2.87
2449 2782 3.931578 ACTTGGCGCATATATCTTCTCC 58.068 45.455 10.83 0.00 0.00 3.71
2450 2783 3.324846 ACTTGGCGCATATATCTTCTCCA 59.675 43.478 10.83 0.00 0.00 3.86
2451 2784 4.019860 ACTTGGCGCATATATCTTCTCCAT 60.020 41.667 10.83 0.00 0.00 3.41
2452 2785 5.187772 ACTTGGCGCATATATCTTCTCCATA 59.812 40.000 10.83 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.933064 CTCAGATCGGCGGCGACC 62.933 72.222 37.06 28.97 0.00 4.79
12 13 4.957684 ATGCGGCGGCTCAGATCG 62.958 66.667 17.76 0.00 40.82 3.69
13 14 3.040763 GATGCGGCGGCTCAGATC 61.041 66.667 17.76 8.05 40.82 2.75
14 15 4.957684 CGATGCGGCGGCTCAGAT 62.958 66.667 17.76 2.01 40.82 2.90
25 26 3.451556 ATCTGGTCTGGCCGATGCG 62.452 63.158 0.00 0.00 41.21 4.73
26 27 1.596477 GATCTGGTCTGGCCGATGC 60.596 63.158 9.71 0.00 41.21 3.91
27 28 2.131405 AGATCTGGTCTGGCCGATG 58.869 57.895 9.71 0.00 41.21 3.84
28 29 4.716025 AGATCTGGTCTGGCCGAT 57.284 55.556 0.00 5.54 41.21 4.18
47 48 1.338890 TGTGTGGTTTGTCCTCCGGA 61.339 55.000 2.93 2.93 37.07 5.14
48 49 0.250727 ATGTGTGGTTTGTCCTCCGG 60.251 55.000 0.00 0.00 37.07 5.14
49 50 0.874390 CATGTGTGGTTTGTCCTCCG 59.126 55.000 0.00 0.00 37.07 4.63
50 51 1.247567 CCATGTGTGGTTTGTCCTCC 58.752 55.000 0.00 0.00 40.83 4.30
74 75 4.678743 GGGCCTGGTGGTTGGGTC 62.679 72.222 0.84 0.00 35.27 4.46
75 76 3.699234 TATAGGGCCTGGTGGTTGGGT 62.699 57.143 18.53 0.00 35.27 4.51
76 77 0.991355 TATAGGGCCTGGTGGTTGGG 60.991 60.000 18.53 0.00 35.27 4.12
77 78 1.149101 ATATAGGGCCTGGTGGTTGG 58.851 55.000 18.53 0.00 35.27 3.77
78 79 1.819305 GCATATAGGGCCTGGTGGTTG 60.819 57.143 18.53 6.35 35.27 3.77
79 80 0.478507 GCATATAGGGCCTGGTGGTT 59.521 55.000 18.53 0.00 35.27 3.67
80 81 2.155065 GCATATAGGGCCTGGTGGT 58.845 57.895 18.53 0.00 35.27 4.16
88 89 1.302511 CGGTGGTGGCATATAGGGC 60.303 63.158 3.67 3.67 0.00 5.19
89 90 1.302511 GCGGTGGTGGCATATAGGG 60.303 63.158 0.00 0.00 0.00 3.53
90 91 1.302511 GGCGGTGGTGGCATATAGG 60.303 63.158 0.00 0.00 0.00 2.57
91 92 1.667830 CGGCGGTGGTGGCATATAG 60.668 63.158 0.00 0.00 0.00 1.31
92 93 1.687297 TTCGGCGGTGGTGGCATATA 61.687 55.000 7.21 0.00 0.00 0.86
93 94 3.037686 TTCGGCGGTGGTGGCATAT 62.038 57.895 7.21 0.00 0.00 1.78
94 95 3.707458 TTCGGCGGTGGTGGCATA 61.707 61.111 7.21 0.00 0.00 3.14
104 105 4.796231 CTGACCTCGGTTCGGCGG 62.796 72.222 7.21 0.00 0.00 6.13
105 106 3.064987 ATCTGACCTCGGTTCGGCG 62.065 63.158 0.00 0.00 0.00 6.46
106 107 1.519455 CATCTGACCTCGGTTCGGC 60.519 63.158 0.00 0.00 0.00 5.54
107 108 1.141881 CCATCTGACCTCGGTTCGG 59.858 63.158 0.00 0.00 0.00 4.30
108 109 0.179134 GACCATCTGACCTCGGTTCG 60.179 60.000 0.00 0.00 0.00 3.95
109 110 0.175989 GGACCATCTGACCTCGGTTC 59.824 60.000 0.00 0.00 0.00 3.62
110 111 0.544357 TGGACCATCTGACCTCGGTT 60.544 55.000 0.00 0.00 0.00 4.44
111 112 0.325671 ATGGACCATCTGACCTCGGT 60.326 55.000 0.00 0.00 0.00 4.69
112 113 0.390860 GATGGACCATCTGACCTCGG 59.609 60.000 24.77 0.00 37.82 4.63
113 114 0.031314 CGATGGACCATCTGACCTCG 59.969 60.000 27.89 13.90 38.59 4.63
114 115 0.249657 GCGATGGACCATCTGACCTC 60.250 60.000 27.89 5.97 38.59 3.85
115 116 1.690219 GGCGATGGACCATCTGACCT 61.690 60.000 27.89 0.00 38.59 3.85
116 117 1.227674 GGCGATGGACCATCTGACC 60.228 63.158 27.89 22.23 38.59 4.02
117 118 1.592669 CGGCGATGGACCATCTGAC 60.593 63.158 27.89 22.22 38.59 3.51
118 119 2.814604 CGGCGATGGACCATCTGA 59.185 61.111 27.89 0.00 38.59 3.27
119 120 2.969238 GCGGCGATGGACCATCTG 60.969 66.667 27.89 21.99 38.59 2.90
120 121 4.241555 GGCGGCGATGGACCATCT 62.242 66.667 27.89 0.00 38.59 2.90
202 203 4.609018 CTAGGGCGGATGGTGGCG 62.609 72.222 0.00 0.00 0.00 5.69
203 204 4.256180 CCTAGGGCGGATGGTGGC 62.256 72.222 0.00 0.00 0.00 5.01
204 205 4.256180 GCCTAGGGCGGATGGTGG 62.256 72.222 11.72 0.00 39.62 4.61
265 266 2.124570 CCGATCTGGCCTTGGTGG 60.125 66.667 3.32 0.00 39.35 4.61
317 318 4.559063 CTCTCCTGCGCCATGGGG 62.559 72.222 23.98 23.98 37.18 4.96
318 319 3.457625 CTCTCTCCTGCGCCATGGG 62.458 68.421 15.13 4.77 0.00 4.00
319 320 2.108566 CTCTCTCCTGCGCCATGG 59.891 66.667 7.63 7.63 0.00 3.66
320 321 2.108566 CCTCTCTCCTGCGCCATG 59.891 66.667 4.18 0.00 0.00 3.66
321 322 3.160047 CCCTCTCTCCTGCGCCAT 61.160 66.667 4.18 0.00 0.00 4.40
322 323 3.905153 TTCCCTCTCTCCTGCGCCA 62.905 63.158 4.18 0.00 0.00 5.69
323 324 3.077556 TTCCCTCTCTCCTGCGCC 61.078 66.667 4.18 0.00 0.00 6.53
324 325 2.498726 CTTCCCTCTCTCCTGCGC 59.501 66.667 0.00 0.00 0.00 6.09
325 326 3.087666 GCCTTCCCTCTCTCCTGCG 62.088 68.421 0.00 0.00 0.00 5.18
326 327 2.741055 GGCCTTCCCTCTCTCCTGC 61.741 68.421 0.00 0.00 0.00 4.85
327 328 3.640761 GGCCTTCCCTCTCTCCTG 58.359 66.667 0.00 0.00 0.00 3.86
384 385 2.840102 CTACCCCTCCCTCTGCCG 60.840 72.222 0.00 0.00 0.00 5.69
385 386 1.003051 TTCTACCCCTCCCTCTGCC 59.997 63.158 0.00 0.00 0.00 4.85
386 387 1.051556 CCTTCTACCCCTCCCTCTGC 61.052 65.000 0.00 0.00 0.00 4.26
387 388 0.637195 TCCTTCTACCCCTCCCTCTG 59.363 60.000 0.00 0.00 0.00 3.35
388 389 0.637743 GTCCTTCTACCCCTCCCTCT 59.362 60.000 0.00 0.00 0.00 3.69
389 390 0.756070 CGTCCTTCTACCCCTCCCTC 60.756 65.000 0.00 0.00 0.00 4.30
390 391 1.310373 CGTCCTTCTACCCCTCCCT 59.690 63.158 0.00 0.00 0.00 4.20
391 392 1.761271 CCGTCCTTCTACCCCTCCC 60.761 68.421 0.00 0.00 0.00 4.30
392 393 1.761271 CCCGTCCTTCTACCCCTCC 60.761 68.421 0.00 0.00 0.00 4.30
393 394 1.761271 CCCCGTCCTTCTACCCCTC 60.761 68.421 0.00 0.00 0.00 4.30
394 395 2.239680 CTCCCCGTCCTTCTACCCCT 62.240 65.000 0.00 0.00 0.00 4.79
395 396 1.761271 CTCCCCGTCCTTCTACCCC 60.761 68.421 0.00 0.00 0.00 4.95
396 397 2.433146 GCTCCCCGTCCTTCTACCC 61.433 68.421 0.00 0.00 0.00 3.69
397 398 2.433146 GGCTCCCCGTCCTTCTACC 61.433 68.421 0.00 0.00 0.00 3.18
398 399 2.433146 GGGCTCCCCGTCCTTCTAC 61.433 68.421 0.00 0.00 33.40 2.59
399 400 2.042230 GGGCTCCCCGTCCTTCTA 60.042 66.667 0.00 0.00 33.40 2.10
414 415 4.157120 CAACCCTAGTCGCCGGGG 62.157 72.222 13.31 13.31 45.07 5.73
415 416 4.832608 GCAACCCTAGTCGCCGGG 62.833 72.222 2.18 0.00 46.26 5.73
417 418 4.430765 ACGCAACCCTAGTCGCCG 62.431 66.667 0.00 0.00 0.00 6.46
418 419 2.508663 GACGCAACCCTAGTCGCC 60.509 66.667 0.00 0.00 0.00 5.54
419 420 2.508663 GGACGCAACCCTAGTCGC 60.509 66.667 0.00 0.00 35.87 5.19
420 421 2.183555 GGGACGCAACCCTAGTCG 59.816 66.667 7.82 0.00 45.90 4.18
473 474 2.115266 CTGTGTTCCACCACCCCC 59.885 66.667 0.00 0.00 34.35 5.40
474 475 2.597510 GCTGTGTTCCACCACCCC 60.598 66.667 0.00 0.00 34.35 4.95
475 476 2.978010 CGCTGTGTTCCACCACCC 60.978 66.667 0.00 0.00 34.35 4.61
476 477 2.978010 CCGCTGTGTTCCACCACC 60.978 66.667 0.00 0.00 34.35 4.61
477 478 2.978010 CCCGCTGTGTTCCACCAC 60.978 66.667 0.00 0.00 32.73 4.16
478 479 4.263572 CCCCGCTGTGTTCCACCA 62.264 66.667 0.00 0.00 32.73 4.17
491 492 1.544825 ATATGATCTGGTCGCCCCCG 61.545 60.000 0.00 0.00 0.00 5.73
492 493 0.250513 GATATGATCTGGTCGCCCCC 59.749 60.000 0.00 0.00 0.00 5.40
493 494 1.270907 AGATATGATCTGGTCGCCCC 58.729 55.000 0.00 0.00 38.44 5.80
502 503 9.258826 CTCGAAGTTTGATTTCAGATATGATCT 57.741 33.333 0.00 0.00 41.15 2.75
509 510 9.273016 TCTAAAACTCGAAGTTTGATTTCAGAT 57.727 29.630 11.88 0.01 46.78 2.90
511 512 9.884465 AATCTAAAACTCGAAGTTTGATTTCAG 57.116 29.630 11.88 0.00 46.78 3.02
533 534 8.770828 TCGAAACAGAAAGAACGATTAAAATCT 58.229 29.630 0.00 0.00 33.24 2.40
534 535 8.928844 TCGAAACAGAAAGAACGATTAAAATC 57.071 30.769 0.00 0.00 0.00 2.17
543 544 2.475487 GACCCTCGAAACAGAAAGAACG 59.525 50.000 0.00 0.00 0.00 3.95
546 547 2.963101 TCTGACCCTCGAAACAGAAAGA 59.037 45.455 0.00 0.00 36.63 2.52
547 548 3.060602 GTCTGACCCTCGAAACAGAAAG 58.939 50.000 10.49 0.00 40.30 2.62
551 552 0.314302 ACGTCTGACCCTCGAAACAG 59.686 55.000 1.55 0.00 0.00 3.16
646 647 3.244112 GGGGATACAACTAAGATCGTGGG 60.244 52.174 0.00 0.00 39.74 4.61
685 686 5.335661 CGCAACTGCTCCTAAATTAGGTTTT 60.336 40.000 17.76 3.91 40.00 2.43
686 687 4.156008 CGCAACTGCTCCTAAATTAGGTTT 59.844 41.667 17.76 3.62 40.00 3.27
688 689 3.270877 CGCAACTGCTCCTAAATTAGGT 58.729 45.455 17.76 0.00 40.00 3.08
689 690 3.270877 ACGCAACTGCTCCTAAATTAGG 58.729 45.455 12.74 12.74 40.23 2.69
690 691 4.437390 CCAACGCAACTGCTCCTAAATTAG 60.437 45.833 0.00 0.00 39.32 1.73
691 692 3.438781 CCAACGCAACTGCTCCTAAATTA 59.561 43.478 0.00 0.00 39.32 1.40
692 693 2.228822 CCAACGCAACTGCTCCTAAATT 59.771 45.455 0.00 0.00 39.32 1.82
694 695 1.234821 CCAACGCAACTGCTCCTAAA 58.765 50.000 0.00 0.00 39.32 1.85
695 696 0.107831 ACCAACGCAACTGCTCCTAA 59.892 50.000 0.00 0.00 39.32 2.69
696 697 0.602638 CACCAACGCAACTGCTCCTA 60.603 55.000 0.00 0.00 39.32 2.94
697 698 1.893808 CACCAACGCAACTGCTCCT 60.894 57.895 0.00 0.00 39.32 3.69
702 796 0.940519 CAATGGCACCAACGCAACTG 60.941 55.000 0.00 0.00 0.00 3.16
709 803 0.541764 TTCTCCCCAATGGCACCAAC 60.542 55.000 0.00 0.00 0.00 3.77
735 829 4.814771 GGAGCATACAAGTGGTGGTATTAC 59.185 45.833 0.00 0.00 0.00 1.89
744 838 2.715749 TCATGGGAGCATACAAGTGG 57.284 50.000 0.00 0.00 0.00 4.00
757 851 9.664332 TTGACATTTTTAAATTGGTATCATGGG 57.336 29.630 4.89 0.00 0.00 4.00
785 879 7.606073 CCGGGAGAATTTTTGGAAACATTTAAT 59.394 33.333 0.00 0.00 42.32 1.40
804 898 0.893270 CAAACAATGGCACCGGGAGA 60.893 55.000 6.32 0.00 0.00 3.71
805 899 1.178534 ACAAACAATGGCACCGGGAG 61.179 55.000 6.32 0.00 0.00 4.30
806 900 1.152652 ACAAACAATGGCACCGGGA 60.153 52.632 6.32 0.00 0.00 5.14
807 901 1.178534 AGACAAACAATGGCACCGGG 61.179 55.000 6.32 0.00 40.75 5.73
808 902 1.468520 CTAGACAAACAATGGCACCGG 59.531 52.381 0.00 0.00 40.75 5.28
809 903 1.135689 GCTAGACAAACAATGGCACCG 60.136 52.381 0.00 0.00 40.75 4.94
838 932 2.682856 TCAGAACTTGCGCTTGAAGTTT 59.317 40.909 21.03 11.22 42.42 2.66
875 1189 1.153353 GAAATCAGAACGTTGCCCGA 58.847 50.000 5.00 0.00 40.70 5.14
896 1210 0.454600 GAGGAGGTGTCGCGACATTA 59.545 55.000 40.84 19.38 43.97 1.90
915 1229 3.925090 GGGATCGTAGTGGGGCCG 61.925 72.222 0.00 0.00 0.00 6.13
1143 1466 1.305623 CAGGCCCTGGATTTGCTCT 59.694 57.895 1.63 0.00 0.00 4.09
1470 1799 3.921021 GCATCGATTATACGAAGTGAGGG 59.079 47.826 0.00 0.00 45.73 4.30
1603 1932 7.366513 CAACACCACCAAACAAAAGAAAATTT 58.633 30.769 0.00 0.00 0.00 1.82
1708 2040 4.083110 CCTCACAAGACATTGCTCGAATTT 60.083 41.667 0.00 0.00 40.27 1.82
1727 2059 6.573664 AATTGAACACGATTCAAATCCTCA 57.426 33.333 18.69 1.03 41.16 3.86
1771 2103 7.725251 AGACATTTCAGCTAAAACAAAATCCA 58.275 30.769 0.00 0.00 0.00 3.41
1772 2104 9.860898 ATAGACATTTCAGCTAAAACAAAATCC 57.139 29.630 0.00 0.00 0.00 3.01
1810 2142 8.149631 AAATGTTTGGAATTGGTCCTATCATT 57.850 30.769 7.07 7.07 45.58 2.57
1904 2237 0.250989 TGTTCACCAAATCCGGGTCC 60.251 55.000 0.00 0.00 36.19 4.46
1905 2238 1.472480 CATGTTCACCAAATCCGGGTC 59.528 52.381 0.00 0.00 36.19 4.46
1906 2239 1.544724 CATGTTCACCAAATCCGGGT 58.455 50.000 0.00 0.00 39.88 5.28
1907 2240 0.817013 CCATGTTCACCAAATCCGGG 59.183 55.000 0.00 0.00 0.00 5.73
1908 2241 0.817013 CCCATGTTCACCAAATCCGG 59.183 55.000 0.00 0.00 0.00 5.14
1909 2242 1.202114 CACCCATGTTCACCAAATCCG 59.798 52.381 0.00 0.00 0.00 4.18
1910 2243 1.066929 GCACCCATGTTCACCAAATCC 60.067 52.381 0.00 0.00 0.00 3.01
1911 2244 1.617850 TGCACCCATGTTCACCAAATC 59.382 47.619 0.00 0.00 0.00 2.17
1912 2245 1.344114 GTGCACCCATGTTCACCAAAT 59.656 47.619 5.22 0.00 33.21 2.32
1913 2246 0.749649 GTGCACCCATGTTCACCAAA 59.250 50.000 5.22 0.00 33.21 3.28
1914 2247 1.451337 CGTGCACCCATGTTCACCAA 61.451 55.000 12.15 0.00 35.52 3.67
1915 2248 1.896183 CGTGCACCCATGTTCACCA 60.896 57.895 12.15 0.00 35.52 4.17
1916 2249 2.953821 CGTGCACCCATGTTCACC 59.046 61.111 12.15 0.00 35.52 4.02
1917 2250 2.255252 GCGTGCACCCATGTTCAC 59.745 61.111 12.15 0.00 35.59 3.18
1918 2251 3.353029 CGCGTGCACCCATGTTCA 61.353 61.111 12.15 0.00 0.00 3.18
1919 2252 4.759096 GCGCGTGCACCCATGTTC 62.759 66.667 17.66 0.00 42.15 3.18
1928 2261 6.416228 ACTATTTATAAAGAGTGCGCGTGCA 61.416 40.000 21.72 21.72 38.86 4.57
1929 2262 2.798834 TTTATAAAGAGTGCGCGTGC 57.201 45.000 15.48 15.48 43.20 5.34
1930 2263 5.637104 ACTATTTATAAAGAGTGCGCGTG 57.363 39.130 21.55 0.00 38.86 5.34
1931 2264 7.760131 TTTACTATTTATAAAGAGTGCGCGT 57.240 32.000 27.73 9.67 40.36 6.01
1932 2265 9.646336 AAATTTACTATTTATAAAGAGTGCGCG 57.354 29.630 27.73 0.00 40.36 6.86
2001 2334 8.509690 GCGAGTATACTGGTTGACTATGTATAA 58.490 37.037 10.90 0.00 30.88 0.98
2002 2335 7.662669 TGCGAGTATACTGGTTGACTATGTATA 59.337 37.037 10.90 0.00 0.00 1.47
2003 2336 6.489022 TGCGAGTATACTGGTTGACTATGTAT 59.511 38.462 10.90 0.00 0.00 2.29
2004 2337 5.824097 TGCGAGTATACTGGTTGACTATGTA 59.176 40.000 10.90 0.00 0.00 2.29
2005 2338 4.643334 TGCGAGTATACTGGTTGACTATGT 59.357 41.667 10.90 0.00 0.00 2.29
2006 2339 5.183014 TGCGAGTATACTGGTTGACTATG 57.817 43.478 10.90 0.00 0.00 2.23
2007 2340 7.393515 TCATATGCGAGTATACTGGTTGACTAT 59.606 37.037 10.90 1.58 0.00 2.12
2008 2341 6.713450 TCATATGCGAGTATACTGGTTGACTA 59.287 38.462 10.90 0.00 0.00 2.59
2009 2342 5.535030 TCATATGCGAGTATACTGGTTGACT 59.465 40.000 10.90 0.00 0.00 3.41
2010 2343 5.769367 TCATATGCGAGTATACTGGTTGAC 58.231 41.667 10.90 0.00 0.00 3.18
2011 2344 6.040504 ACTTCATATGCGAGTATACTGGTTGA 59.959 38.462 10.90 8.58 0.00 3.18
2012 2345 6.216569 ACTTCATATGCGAGTATACTGGTTG 58.783 40.000 10.90 6.54 0.00 3.77
2013 2346 6.406692 ACTTCATATGCGAGTATACTGGTT 57.593 37.500 10.90 4.11 0.00 3.67
2014 2347 6.406692 AACTTCATATGCGAGTATACTGGT 57.593 37.500 10.90 0.00 0.00 4.00
2015 2348 6.923508 TGAAACTTCATATGCGAGTATACTGG 59.076 38.462 10.90 10.58 31.01 4.00
2016 2349 7.930513 TGAAACTTCATATGCGAGTATACTG 57.069 36.000 10.90 4.13 31.01 2.74
2017 2350 8.360390 TCATGAAACTTCATATGCGAGTATACT 58.640 33.333 4.68 4.68 45.62 2.12
2018 2351 8.520835 TCATGAAACTTCATATGCGAGTATAC 57.479 34.615 4.66 0.00 45.62 1.47
2019 2352 9.196552 CTTCATGAAACTTCATATGCGAGTATA 57.803 33.333 9.88 3.54 45.62 1.47
2020 2353 7.928167 TCTTCATGAAACTTCATATGCGAGTAT 59.072 33.333 9.88 1.41 45.62 2.12
2021 2354 7.264947 TCTTCATGAAACTTCATATGCGAGTA 58.735 34.615 9.88 0.00 45.62 2.59
2022 2355 6.108687 TCTTCATGAAACTTCATATGCGAGT 58.891 36.000 9.88 1.86 45.62 4.18
2023 2356 6.594284 TCTTCATGAAACTTCATATGCGAG 57.406 37.500 9.88 1.21 45.62 5.03
2024 2357 6.983474 TTCTTCATGAAACTTCATATGCGA 57.017 33.333 9.88 0.00 45.62 5.10
2025 2358 7.911727 TGATTTCTTCATGAAACTTCATATGCG 59.088 33.333 9.88 0.00 45.62 4.73
2026 2359 9.017669 GTGATTTCTTCATGAAACTTCATATGC 57.982 33.333 9.88 0.00 45.62 3.14
2031 2364 7.573656 CGGATGTGATTTCTTCATGAAACTTCA 60.574 37.037 9.88 7.61 46.08 3.02
2032 2365 6.744537 CGGATGTGATTTCTTCATGAAACTTC 59.255 38.462 9.88 10.44 46.08 3.01
2033 2366 6.207417 ACGGATGTGATTTCTTCATGAAACTT 59.793 34.615 9.88 2.00 46.08 2.66
2034 2367 5.707298 ACGGATGTGATTTCTTCATGAAACT 59.293 36.000 9.88 0.00 46.08 2.66
2035 2368 5.942872 ACGGATGTGATTTCTTCATGAAAC 58.057 37.500 9.88 4.25 46.08 2.78
2050 2383 2.093711 TGTCCAGATTACCACGGATGTG 60.094 50.000 0.00 0.00 46.00 3.21
2051 2384 2.184533 TGTCCAGATTACCACGGATGT 58.815 47.619 0.00 0.00 0.00 3.06
2052 2385 2.979814 TGTCCAGATTACCACGGATG 57.020 50.000 0.00 0.00 0.00 3.51
2053 2386 3.992943 TTTGTCCAGATTACCACGGAT 57.007 42.857 0.00 0.00 0.00 4.18
2054 2387 3.773418 TTTTGTCCAGATTACCACGGA 57.227 42.857 0.00 0.00 0.00 4.69
2055 2388 4.457603 TCATTTTTGTCCAGATTACCACGG 59.542 41.667 0.00 0.00 0.00 4.94
2056 2389 5.049060 TGTCATTTTTGTCCAGATTACCACG 60.049 40.000 0.00 0.00 0.00 4.94
2057 2390 6.325919 TGTCATTTTTGTCCAGATTACCAC 57.674 37.500 0.00 0.00 0.00 4.16
2058 2391 6.968263 TTGTCATTTTTGTCCAGATTACCA 57.032 33.333 0.00 0.00 0.00 3.25
2059 2392 8.831715 ATTTTGTCATTTTTGTCCAGATTACC 57.168 30.769 0.00 0.00 0.00 2.85
2060 2393 8.638565 CGATTTTGTCATTTTTGTCCAGATTAC 58.361 33.333 0.00 0.00 0.00 1.89
2061 2394 8.572185 TCGATTTTGTCATTTTTGTCCAGATTA 58.428 29.630 0.00 0.00 0.00 1.75
2062 2395 7.432869 TCGATTTTGTCATTTTTGTCCAGATT 58.567 30.769 0.00 0.00 0.00 2.40
2063 2396 6.980593 TCGATTTTGTCATTTTTGTCCAGAT 58.019 32.000 0.00 0.00 0.00 2.90
2064 2397 6.384258 TCGATTTTGTCATTTTTGTCCAGA 57.616 33.333 0.00 0.00 0.00 3.86
2065 2398 6.346040 GCTTCGATTTTGTCATTTTTGTCCAG 60.346 38.462 0.00 0.00 0.00 3.86
2066 2399 5.461737 GCTTCGATTTTGTCATTTTTGTCCA 59.538 36.000 0.00 0.00 0.00 4.02
2067 2400 5.691754 AGCTTCGATTTTGTCATTTTTGTCC 59.308 36.000 0.00 0.00 0.00 4.02
2068 2401 6.753897 AGCTTCGATTTTGTCATTTTTGTC 57.246 33.333 0.00 0.00 0.00 3.18
2099 2432 9.730420 GCCATACTATTCATTAAACGATGTTTT 57.270 29.630 0.00 0.00 0.00 2.43
2100 2433 8.349983 GGCCATACTATTCATTAAACGATGTTT 58.650 33.333 0.00 0.22 0.00 2.83
2101 2434 7.307751 CGGCCATACTATTCATTAAACGATGTT 60.308 37.037 2.24 0.00 0.00 2.71
2102 2435 6.147164 CGGCCATACTATTCATTAAACGATGT 59.853 38.462 2.24 0.00 0.00 3.06
2103 2436 6.534059 CGGCCATACTATTCATTAAACGATG 58.466 40.000 2.24 0.00 0.00 3.84
2104 2437 5.121768 GCGGCCATACTATTCATTAAACGAT 59.878 40.000 2.24 0.00 0.00 3.73
2105 2438 4.449743 GCGGCCATACTATTCATTAAACGA 59.550 41.667 2.24 0.00 0.00 3.85
2106 2439 4.212425 TGCGGCCATACTATTCATTAAACG 59.788 41.667 2.24 0.00 0.00 3.60
2107 2440 5.682943 TGCGGCCATACTATTCATTAAAC 57.317 39.130 2.24 0.00 0.00 2.01
2108 2441 6.892658 AATGCGGCCATACTATTCATTAAA 57.107 33.333 2.24 0.00 0.00 1.52
2109 2442 6.264292 ACAAATGCGGCCATACTATTCATTAA 59.736 34.615 2.24 0.00 0.00 1.40
2110 2443 5.767665 ACAAATGCGGCCATACTATTCATTA 59.232 36.000 2.24 0.00 0.00 1.90
2111 2444 4.584325 ACAAATGCGGCCATACTATTCATT 59.416 37.500 2.24 0.00 0.00 2.57
2112 2445 4.144297 ACAAATGCGGCCATACTATTCAT 58.856 39.130 2.24 0.00 0.00 2.57
2113 2446 3.550820 ACAAATGCGGCCATACTATTCA 58.449 40.909 2.24 0.00 0.00 2.57
2114 2447 5.880054 ATACAAATGCGGCCATACTATTC 57.120 39.130 2.24 0.00 0.00 1.75
2115 2448 6.648879 AAATACAAATGCGGCCATACTATT 57.351 33.333 2.24 0.00 0.00 1.73
2116 2449 6.490040 AGAAAATACAAATGCGGCCATACTAT 59.510 34.615 2.24 0.00 0.00 2.12
2117 2450 5.825679 AGAAAATACAAATGCGGCCATACTA 59.174 36.000 2.24 0.00 0.00 1.82
2118 2451 4.644685 AGAAAATACAAATGCGGCCATACT 59.355 37.500 2.24 0.00 0.00 2.12
2119 2452 4.932146 AGAAAATACAAATGCGGCCATAC 58.068 39.130 2.24 0.00 0.00 2.39
2120 2453 5.126222 TGAAGAAAATACAAATGCGGCCATA 59.874 36.000 2.24 0.00 0.00 2.74
2121 2454 4.081752 TGAAGAAAATACAAATGCGGCCAT 60.082 37.500 2.24 0.00 0.00 4.40
2122 2455 3.256879 TGAAGAAAATACAAATGCGGCCA 59.743 39.130 2.24 0.00 0.00 5.36
2123 2456 3.612423 GTGAAGAAAATACAAATGCGGCC 59.388 43.478 0.00 0.00 0.00 6.13
2124 2457 4.485163 AGTGAAGAAAATACAAATGCGGC 58.515 39.130 0.00 0.00 0.00 6.53
2125 2458 7.526608 TCTTAGTGAAGAAAATACAAATGCGG 58.473 34.615 0.00 0.00 38.80 5.69
2126 2459 8.948853 TTCTTAGTGAAGAAAATACAAATGCG 57.051 30.769 0.00 0.00 46.44 4.73
2139 2472 5.421056 ACACCCATCGTATTCTTAGTGAAGA 59.579 40.000 0.00 0.00 40.04 2.87
2140 2473 5.661458 ACACCCATCGTATTCTTAGTGAAG 58.339 41.667 0.00 0.00 38.18 3.02
2141 2474 5.186215 TGACACCCATCGTATTCTTAGTGAA 59.814 40.000 0.00 0.00 39.24 3.18
2142 2475 4.707934 TGACACCCATCGTATTCTTAGTGA 59.292 41.667 0.00 0.00 0.00 3.41
2143 2476 5.006153 TGACACCCATCGTATTCTTAGTG 57.994 43.478 0.00 0.00 0.00 2.74
2144 2477 5.670792 TTGACACCCATCGTATTCTTAGT 57.329 39.130 0.00 0.00 0.00 2.24
2145 2478 7.207383 TGTATTGACACCCATCGTATTCTTAG 58.793 38.462 0.00 0.00 0.00 2.18
2146 2479 7.114866 TGTATTGACACCCATCGTATTCTTA 57.885 36.000 0.00 0.00 0.00 2.10
2147 2480 5.984725 TGTATTGACACCCATCGTATTCTT 58.015 37.500 0.00 0.00 0.00 2.52
2148 2481 5.607939 TGTATTGACACCCATCGTATTCT 57.392 39.130 0.00 0.00 0.00 2.40
2149 2482 5.989168 TGATGTATTGACACCCATCGTATTC 59.011 40.000 0.00 0.00 38.76 1.75
2150 2483 5.924356 TGATGTATTGACACCCATCGTATT 58.076 37.500 0.00 0.00 38.76 1.89
2151 2484 5.545063 TGATGTATTGACACCCATCGTAT 57.455 39.130 0.00 0.00 38.76 3.06
2152 2485 5.069781 TCATGATGTATTGACACCCATCGTA 59.930 40.000 0.00 0.00 38.76 3.43
2153 2486 3.904800 TGATGTATTGACACCCATCGT 57.095 42.857 0.00 0.00 38.76 3.73
2154 2487 4.379652 TCATGATGTATTGACACCCATCG 58.620 43.478 0.00 0.00 38.76 3.84
2155 2488 6.319658 AGTTTCATGATGTATTGACACCCATC 59.680 38.462 0.00 0.00 38.76 3.51
2156 2489 6.189859 AGTTTCATGATGTATTGACACCCAT 58.810 36.000 0.00 0.00 38.76 4.00
2157 2490 5.569355 AGTTTCATGATGTATTGACACCCA 58.431 37.500 0.00 0.00 38.76 4.51
2158 2491 6.150976 TGAAGTTTCATGATGTATTGACACCC 59.849 38.462 0.00 0.00 33.08 4.61
2159 2492 7.023575 GTGAAGTTTCATGATGTATTGACACC 58.976 38.462 0.00 0.00 37.74 4.16
2160 2493 7.535258 GTGTGAAGTTTCATGATGTATTGACAC 59.465 37.037 13.25 13.25 37.74 3.67
2161 2494 7.571059 CGTGTGAAGTTTCATGATGTATTGACA 60.571 37.037 0.00 0.00 39.73 3.58
2162 2495 6.738200 CGTGTGAAGTTTCATGATGTATTGAC 59.262 38.462 0.00 0.00 39.73 3.18
2163 2496 6.426633 ACGTGTGAAGTTTCATGATGTATTGA 59.573 34.615 0.00 0.00 39.73 2.57
2164 2497 6.520790 CACGTGTGAAGTTTCATGATGTATTG 59.479 38.462 7.58 0.00 39.73 1.90
2165 2498 6.426633 TCACGTGTGAAGTTTCATGATGTATT 59.573 34.615 16.51 0.00 39.73 1.89
2166 2499 5.931724 TCACGTGTGAAGTTTCATGATGTAT 59.068 36.000 16.51 0.00 39.73 2.29
2167 2500 5.293560 TCACGTGTGAAGTTTCATGATGTA 58.706 37.500 16.51 0.00 39.73 2.29
2168 2501 4.126437 TCACGTGTGAAGTTTCATGATGT 58.874 39.130 16.51 0.00 39.73 3.06
2169 2502 4.212004 ACTCACGTGTGAAGTTTCATGATG 59.788 41.667 23.32 0.00 39.73 3.07
2170 2503 4.380531 ACTCACGTGTGAAGTTTCATGAT 58.619 39.130 23.32 0.00 39.73 2.45
2171 2504 3.792401 ACTCACGTGTGAAGTTTCATGA 58.208 40.909 23.32 0.00 39.73 3.07
2172 2505 4.982295 TCTACTCACGTGTGAAGTTTCATG 59.018 41.667 23.32 5.70 39.73 3.07
2173 2506 5.196341 TCTACTCACGTGTGAAGTTTCAT 57.804 39.130 23.32 1.82 39.73 2.57
2174 2507 4.642445 TCTACTCACGTGTGAAGTTTCA 57.358 40.909 23.32 1.19 39.39 2.69
2175 2508 5.690409 TCATTCTACTCACGTGTGAAGTTTC 59.310 40.000 23.32 0.00 39.39 2.78
2176 2509 5.597806 TCATTCTACTCACGTGTGAAGTTT 58.402 37.500 23.32 3.93 39.39 2.66
2177 2510 5.196341 TCATTCTACTCACGTGTGAAGTT 57.804 39.130 23.32 4.30 39.39 2.66
2178 2511 4.848562 TCATTCTACTCACGTGTGAAGT 57.151 40.909 23.32 17.54 39.39 3.01
2179 2512 4.497251 CGATCATTCTACTCACGTGTGAAG 59.503 45.833 23.32 12.53 39.39 3.02
2180 2513 4.155280 TCGATCATTCTACTCACGTGTGAA 59.845 41.667 23.32 18.02 39.39 3.18
2181 2514 3.687698 TCGATCATTCTACTCACGTGTGA 59.312 43.478 23.32 14.13 38.06 3.58
2182 2515 3.786576 GTCGATCATTCTACTCACGTGTG 59.213 47.826 16.51 16.06 0.00 3.82
2183 2516 3.690139 AGTCGATCATTCTACTCACGTGT 59.310 43.478 16.51 0.00 0.00 4.49
2184 2517 4.201822 TGAGTCGATCATTCTACTCACGTG 60.202 45.833 9.94 9.94 44.96 4.49
2185 2518 3.939592 TGAGTCGATCATTCTACTCACGT 59.060 43.478 6.32 0.00 44.96 4.49
2186 2519 4.522877 CTGAGTCGATCATTCTACTCACG 58.477 47.826 6.32 0.00 44.96 4.35
2187 2520 4.336993 ACCTGAGTCGATCATTCTACTCAC 59.663 45.833 6.32 0.00 44.96 3.51
2188 2521 4.527944 ACCTGAGTCGATCATTCTACTCA 58.472 43.478 9.22 9.22 46.58 3.41
2189 2522 5.066634 TGAACCTGAGTCGATCATTCTACTC 59.933 44.000 0.00 0.00 42.29 2.59
2190 2523 4.950475 TGAACCTGAGTCGATCATTCTACT 59.050 41.667 0.00 0.00 37.28 2.57
2191 2524 5.250235 TGAACCTGAGTCGATCATTCTAC 57.750 43.478 0.00 0.00 37.28 2.59
2192 2525 6.016192 GGTATGAACCTGAGTCGATCATTCTA 60.016 42.308 1.13 0.00 43.08 2.10
2193 2526 5.221342 GGTATGAACCTGAGTCGATCATTCT 60.221 44.000 1.13 0.00 43.08 2.40
2194 2527 4.985409 GGTATGAACCTGAGTCGATCATTC 59.015 45.833 1.13 3.57 43.08 2.67
2195 2528 4.499865 CGGTATGAACCTGAGTCGATCATT 60.500 45.833 1.13 0.00 44.35 2.57
2196 2529 3.004839 CGGTATGAACCTGAGTCGATCAT 59.995 47.826 0.00 0.00 44.35 2.45
2197 2530 2.357952 CGGTATGAACCTGAGTCGATCA 59.642 50.000 0.00 0.00 44.35 2.92
2198 2531 2.859032 GCGGTATGAACCTGAGTCGATC 60.859 54.545 0.00 0.00 44.35 3.69
2199 2532 1.067212 GCGGTATGAACCTGAGTCGAT 59.933 52.381 0.00 0.00 44.35 3.59
2200 2533 0.454600 GCGGTATGAACCTGAGTCGA 59.545 55.000 0.00 0.00 44.35 4.20
2201 2534 0.172578 TGCGGTATGAACCTGAGTCG 59.827 55.000 0.00 0.00 44.35 4.18
2202 2535 2.380084 TTGCGGTATGAACCTGAGTC 57.620 50.000 0.00 0.00 44.35 3.36
2203 2536 2.851263 TTTGCGGTATGAACCTGAGT 57.149 45.000 0.00 0.00 44.35 3.41
2204 2537 4.701956 AATTTTGCGGTATGAACCTGAG 57.298 40.909 0.00 0.00 44.35 3.35
2205 2538 5.461032 AAAATTTTGCGGTATGAACCTGA 57.539 34.783 1.75 0.00 44.35 3.86
2206 2539 6.616947 TCTAAAATTTTGCGGTATGAACCTG 58.383 36.000 13.76 0.00 44.35 4.00
2207 2540 6.827586 TCTAAAATTTTGCGGTATGAACCT 57.172 33.333 13.76 0.00 44.35 3.50
2208 2541 8.474006 AATTCTAAAATTTTGCGGTATGAACC 57.526 30.769 13.76 0.00 35.61 3.62
2209 2542 9.739786 CAAATTCTAAAATTTTGCGGTATGAAC 57.260 29.630 13.76 0.00 41.96 3.18
2210 2543 9.482627 ACAAATTCTAAAATTTTGCGGTATGAA 57.517 25.926 13.76 6.77 41.96 2.57
2211 2544 9.482627 AACAAATTCTAAAATTTTGCGGTATGA 57.517 25.926 13.76 0.00 41.96 2.15
2253 2586 9.233649 ACCCACGTGAATAGTAAATTCATAAAA 57.766 29.630 19.30 0.00 39.80 1.52
2254 2587 8.670135 CACCCACGTGAATAGTAAATTCATAAA 58.330 33.333 19.30 0.00 43.14 1.40
2255 2588 7.201661 GCACCCACGTGAATAGTAAATTCATAA 60.202 37.037 19.30 0.00 43.14 1.90
2256 2589 6.259167 GCACCCACGTGAATAGTAAATTCATA 59.741 38.462 19.30 0.00 43.14 2.15
2257 2590 5.065988 GCACCCACGTGAATAGTAAATTCAT 59.934 40.000 19.30 0.00 43.14 2.57
2258 2591 4.393680 GCACCCACGTGAATAGTAAATTCA 59.606 41.667 19.30 0.00 43.14 2.57
2259 2592 4.493545 CGCACCCACGTGAATAGTAAATTC 60.494 45.833 19.30 0.00 43.14 2.17
2260 2593 3.372822 CGCACCCACGTGAATAGTAAATT 59.627 43.478 19.30 0.00 43.14 1.82
2261 2594 2.933906 CGCACCCACGTGAATAGTAAAT 59.066 45.455 19.30 0.00 43.14 1.40
2262 2595 2.339418 CGCACCCACGTGAATAGTAAA 58.661 47.619 19.30 0.00 43.14 2.01
2263 2596 1.999048 CGCACCCACGTGAATAGTAA 58.001 50.000 19.30 0.00 43.14 2.24
2264 2597 0.458889 GCGCACCCACGTGAATAGTA 60.459 55.000 19.30 0.00 43.14 1.82
2265 2598 1.740296 GCGCACCCACGTGAATAGT 60.740 57.895 19.30 5.88 43.14 2.12
2266 2599 2.798501 CGCGCACCCACGTGAATAG 61.799 63.158 19.30 5.19 46.13 1.73
2267 2600 2.811747 CGCGCACCCACGTGAATA 60.812 61.111 19.30 0.00 46.13 1.75
2280 2613 4.759096 GAACATGGGTGTGCGCGC 62.759 66.667 27.26 27.26 38.92 6.86
2281 2614 3.353029 TGAACATGGGTGTGCGCG 61.353 61.111 0.00 0.00 36.61 6.86
2282 2615 2.255252 GTGAACATGGGTGTGCGC 59.745 61.111 0.00 0.00 36.61 6.09
2283 2616 1.172180 AAGGTGAACATGGGTGTGCG 61.172 55.000 0.00 0.00 36.61 5.34
2284 2617 1.039856 AAAGGTGAACATGGGTGTGC 58.960 50.000 0.00 0.00 38.92 4.57
2285 2618 2.031120 ACAAAGGTGAACATGGGTGTG 58.969 47.619 0.00 0.00 38.92 3.82
2286 2619 2.452600 ACAAAGGTGAACATGGGTGT 57.547 45.000 0.00 0.00 41.28 4.16
2287 2620 5.467035 AAATACAAAGGTGAACATGGGTG 57.533 39.130 0.00 0.00 0.00 4.61
2288 2621 5.600484 TGAAAATACAAAGGTGAACATGGGT 59.400 36.000 0.00 0.00 0.00 4.51
2289 2622 6.095432 TGAAAATACAAAGGTGAACATGGG 57.905 37.500 0.00 0.00 0.00 4.00
2290 2623 7.209475 ACTTGAAAATACAAAGGTGAACATGG 58.791 34.615 0.00 0.00 0.00 3.66
2291 2624 8.542132 CAACTTGAAAATACAAAGGTGAACATG 58.458 33.333 0.00 0.00 0.00 3.21
2292 2625 8.474025 TCAACTTGAAAATACAAAGGTGAACAT 58.526 29.630 0.08 0.00 29.33 2.71
2293 2626 7.831753 TCAACTTGAAAATACAAAGGTGAACA 58.168 30.769 0.08 0.00 29.33 3.18
2294 2627 8.871686 ATCAACTTGAAAATACAAAGGTGAAC 57.128 30.769 6.48 0.00 32.85 3.18
2295 2628 9.311916 CAATCAACTTGAAAATACAAAGGTGAA 57.688 29.630 6.48 0.00 36.97 3.18
2296 2629 8.474025 ACAATCAACTTGAAAATACAAAGGTGA 58.526 29.630 4.97 4.97 38.29 4.02
2297 2630 8.647143 ACAATCAACTTGAAAATACAAAGGTG 57.353 30.769 0.00 0.00 38.29 4.00
2309 2642 9.461312 AGCCAATATAGTAACAATCAACTTGAA 57.539 29.630 0.00 0.00 38.29 2.69
2317 2650 9.517609 CGACCTATAGCCAATATAGTAACAATC 57.482 37.037 0.00 0.00 41.26 2.67
2318 2651 9.032624 ACGACCTATAGCCAATATAGTAACAAT 57.967 33.333 0.00 0.00 41.26 2.71
2319 2652 8.301720 CACGACCTATAGCCAATATAGTAACAA 58.698 37.037 0.00 0.00 41.26 2.83
2320 2653 7.666804 TCACGACCTATAGCCAATATAGTAACA 59.333 37.037 0.00 0.00 41.26 2.41
2321 2654 8.048534 TCACGACCTATAGCCAATATAGTAAC 57.951 38.462 0.00 0.00 41.26 2.50
2322 2655 8.640063 TTCACGACCTATAGCCAATATAGTAA 57.360 34.615 0.00 0.00 41.26 2.24
2323 2656 8.818622 ATTCACGACCTATAGCCAATATAGTA 57.181 34.615 0.00 0.00 41.26 1.82
2324 2657 7.719871 ATTCACGACCTATAGCCAATATAGT 57.280 36.000 0.00 0.00 41.26 2.12
2325 2658 8.904834 ACTATTCACGACCTATAGCCAATATAG 58.095 37.037 0.00 0.00 42.13 1.31
2326 2659 8.683615 CACTATTCACGACCTATAGCCAATATA 58.316 37.037 0.00 0.00 0.00 0.86
2327 2660 7.396339 TCACTATTCACGACCTATAGCCAATAT 59.604 37.037 0.00 0.00 0.00 1.28
2328 2661 6.717997 TCACTATTCACGACCTATAGCCAATA 59.282 38.462 0.00 0.00 0.00 1.90
2329 2662 5.538813 TCACTATTCACGACCTATAGCCAAT 59.461 40.000 0.00 0.00 0.00 3.16
2330 2663 4.891168 TCACTATTCACGACCTATAGCCAA 59.109 41.667 0.00 0.00 0.00 4.52
2331 2664 4.466827 TCACTATTCACGACCTATAGCCA 58.533 43.478 0.00 0.00 0.00 4.75
2332 2665 5.449107 TTCACTATTCACGACCTATAGCC 57.551 43.478 0.00 0.00 0.00 3.93
2333 2666 6.071840 AGGATTCACTATTCACGACCTATAGC 60.072 42.308 0.00 0.00 0.00 2.97
2334 2667 7.455641 AGGATTCACTATTCACGACCTATAG 57.544 40.000 0.00 0.00 0.00 1.31
2335 2668 9.175312 GATAGGATTCACTATTCACGACCTATA 57.825 37.037 0.00 0.00 38.01 1.31
2336 2669 7.891183 AGATAGGATTCACTATTCACGACCTAT 59.109 37.037 0.00 0.00 39.75 2.57
2337 2670 7.232188 AGATAGGATTCACTATTCACGACCTA 58.768 38.462 0.00 0.00 33.95 3.08
2338 2671 6.071984 AGATAGGATTCACTATTCACGACCT 58.928 40.000 0.00 0.00 33.95 3.85
2339 2672 6.334102 AGATAGGATTCACTATTCACGACC 57.666 41.667 0.00 0.00 33.95 4.79
2340 2673 8.138712 AGAAAGATAGGATTCACTATTCACGAC 58.861 37.037 0.00 0.00 33.95 4.34
2341 2674 8.239038 AGAAAGATAGGATTCACTATTCACGA 57.761 34.615 0.00 0.00 33.95 4.35
2342 2675 7.324856 CGAGAAAGATAGGATTCACTATTCACG 59.675 40.741 0.00 0.00 33.95 4.35
2343 2676 7.596995 CCGAGAAAGATAGGATTCACTATTCAC 59.403 40.741 0.00 0.00 33.95 3.18
2344 2677 7.255977 CCCGAGAAAGATAGGATTCACTATTCA 60.256 40.741 0.00 0.00 33.95 2.57
2345 2678 7.093992 CCCGAGAAAGATAGGATTCACTATTC 58.906 42.308 0.00 0.00 33.95 1.75
2346 2679 6.555360 ACCCGAGAAAGATAGGATTCACTATT 59.445 38.462 0.00 0.00 33.95 1.73
2347 2680 6.078664 ACCCGAGAAAGATAGGATTCACTAT 58.921 40.000 0.00 0.00 36.41 2.12
2348 2681 5.455872 ACCCGAGAAAGATAGGATTCACTA 58.544 41.667 0.00 0.00 0.00 2.74
2349 2682 4.290942 ACCCGAGAAAGATAGGATTCACT 58.709 43.478 0.00 0.00 0.00 3.41
2350 2683 4.674281 ACCCGAGAAAGATAGGATTCAC 57.326 45.455 0.00 0.00 0.00 3.18
2351 2684 5.045869 ACAAACCCGAGAAAGATAGGATTCA 60.046 40.000 0.00 0.00 0.00 2.57
2352 2685 5.429130 ACAAACCCGAGAAAGATAGGATTC 58.571 41.667 0.00 0.00 0.00 2.52
2353 2686 5.437191 ACAAACCCGAGAAAGATAGGATT 57.563 39.130 0.00 0.00 0.00 3.01
2354 2687 5.437191 AACAAACCCGAGAAAGATAGGAT 57.563 39.130 0.00 0.00 0.00 3.24
2355 2688 4.903045 AACAAACCCGAGAAAGATAGGA 57.097 40.909 0.00 0.00 0.00 2.94
2356 2689 6.704937 GGTATAACAAACCCGAGAAAGATAGG 59.295 42.308 0.00 0.00 0.00 2.57
2357 2690 6.420008 CGGTATAACAAACCCGAGAAAGATAG 59.580 42.308 0.00 0.00 43.01 2.08
2358 2691 6.275335 CGGTATAACAAACCCGAGAAAGATA 58.725 40.000 0.00 0.00 43.01 1.98
2359 2692 5.114081 CGGTATAACAAACCCGAGAAAGAT 58.886 41.667 0.00 0.00 43.01 2.40
2360 2693 4.497300 CGGTATAACAAACCCGAGAAAGA 58.503 43.478 0.00 0.00 43.01 2.52
2361 2694 3.063045 GCGGTATAACAAACCCGAGAAAG 59.937 47.826 0.43 0.00 43.01 2.62
2362 2695 3.002102 GCGGTATAACAAACCCGAGAAA 58.998 45.455 0.43 0.00 43.01 2.52
2363 2696 2.234414 AGCGGTATAACAAACCCGAGAA 59.766 45.455 0.43 0.00 43.01 2.87
2364 2697 1.826720 AGCGGTATAACAAACCCGAGA 59.173 47.619 0.43 0.00 43.01 4.04
2365 2698 2.304751 AGCGGTATAACAAACCCGAG 57.695 50.000 0.43 0.00 43.01 4.63
2366 2699 2.760092 AGTAGCGGTATAACAAACCCGA 59.240 45.455 0.00 0.00 43.01 5.14
2367 2700 3.169355 AGTAGCGGTATAACAAACCCG 57.831 47.619 0.00 0.00 43.22 5.28
2368 2701 3.624410 CCAAGTAGCGGTATAACAAACCC 59.376 47.826 0.00 0.00 33.10 4.11
2369 2702 4.506758 TCCAAGTAGCGGTATAACAAACC 58.493 43.478 0.00 0.00 0.00 3.27
2370 2703 6.537660 AGAATCCAAGTAGCGGTATAACAAAC 59.462 38.462 0.00 0.00 0.00 2.93
2371 2704 6.537301 CAGAATCCAAGTAGCGGTATAACAAA 59.463 38.462 0.00 0.00 0.00 2.83
2372 2705 6.046593 CAGAATCCAAGTAGCGGTATAACAA 58.953 40.000 0.00 0.00 0.00 2.83
2373 2706 5.597806 CAGAATCCAAGTAGCGGTATAACA 58.402 41.667 0.00 0.00 0.00 2.41
2374 2707 4.448060 GCAGAATCCAAGTAGCGGTATAAC 59.552 45.833 0.00 0.00 0.00 1.89
2375 2708 4.344102 AGCAGAATCCAAGTAGCGGTATAA 59.656 41.667 0.00 0.00 0.00 0.98
2376 2709 3.895656 AGCAGAATCCAAGTAGCGGTATA 59.104 43.478 0.00 0.00 0.00 1.47
2377 2710 2.700897 AGCAGAATCCAAGTAGCGGTAT 59.299 45.455 0.00 0.00 0.00 2.73
2378 2711 2.108168 AGCAGAATCCAAGTAGCGGTA 58.892 47.619 0.00 0.00 0.00 4.02
2379 2712 0.905357 AGCAGAATCCAAGTAGCGGT 59.095 50.000 0.00 0.00 0.00 5.68
2380 2713 1.936547 GAAGCAGAATCCAAGTAGCGG 59.063 52.381 0.00 0.00 0.00 5.52
2381 2714 2.606725 CTGAAGCAGAATCCAAGTAGCG 59.393 50.000 0.00 0.00 32.44 4.26
2382 2715 3.604582 ACTGAAGCAGAATCCAAGTAGC 58.395 45.455 0.82 0.00 35.18 3.58
2383 2716 5.471456 ACAAACTGAAGCAGAATCCAAGTAG 59.529 40.000 0.82 0.00 35.18 2.57
2384 2717 5.376625 ACAAACTGAAGCAGAATCCAAGTA 58.623 37.500 0.82 0.00 35.18 2.24
2385 2718 4.210331 ACAAACTGAAGCAGAATCCAAGT 58.790 39.130 0.82 0.00 35.18 3.16
2386 2719 4.843220 ACAAACTGAAGCAGAATCCAAG 57.157 40.909 0.82 0.00 35.18 3.61
2387 2720 4.202141 CCAACAAACTGAAGCAGAATCCAA 60.202 41.667 0.82 0.00 35.18 3.53
2388 2721 3.318839 CCAACAAACTGAAGCAGAATCCA 59.681 43.478 0.82 0.00 35.18 3.41
2389 2722 3.319122 ACCAACAAACTGAAGCAGAATCC 59.681 43.478 0.82 0.00 35.18 3.01
2390 2723 4.574599 ACCAACAAACTGAAGCAGAATC 57.425 40.909 0.82 0.00 35.18 2.52
2391 2724 4.022849 GCTACCAACAAACTGAAGCAGAAT 60.023 41.667 0.82 0.00 35.18 2.40
2392 2725 3.315191 GCTACCAACAAACTGAAGCAGAA 59.685 43.478 0.82 0.00 35.18 3.02
2393 2726 2.878406 GCTACCAACAAACTGAAGCAGA 59.122 45.455 0.82 0.00 35.18 4.26
2394 2727 2.880890 AGCTACCAACAAACTGAAGCAG 59.119 45.455 0.00 0.00 37.52 4.24
2395 2728 2.930950 AGCTACCAACAAACTGAAGCA 58.069 42.857 0.00 0.00 31.33 3.91
2396 2729 3.304726 GGAAGCTACCAACAAACTGAAGC 60.305 47.826 0.00 0.00 0.00 3.86
2397 2730 3.882888 TGGAAGCTACCAACAAACTGAAG 59.117 43.478 0.00 0.00 36.96 3.02
2398 2731 3.892284 TGGAAGCTACCAACAAACTGAA 58.108 40.909 0.00 0.00 36.96 3.02
2399 2732 3.569194 TGGAAGCTACCAACAAACTGA 57.431 42.857 0.00 0.00 36.96 3.41
2400 2733 4.278170 TCAATGGAAGCTACCAACAAACTG 59.722 41.667 0.00 0.00 43.47 3.16
2401 2734 4.278419 GTCAATGGAAGCTACCAACAAACT 59.722 41.667 0.00 0.00 43.47 2.66
2402 2735 4.037446 TGTCAATGGAAGCTACCAACAAAC 59.963 41.667 0.00 0.00 43.47 2.93
2403 2736 4.037446 GTGTCAATGGAAGCTACCAACAAA 59.963 41.667 0.00 0.00 43.47 2.83
2404 2737 3.568007 GTGTCAATGGAAGCTACCAACAA 59.432 43.478 0.00 0.00 43.47 2.83
2405 2738 3.146066 GTGTCAATGGAAGCTACCAACA 58.854 45.455 0.00 0.00 43.47 3.33
2406 2739 3.412386 AGTGTCAATGGAAGCTACCAAC 58.588 45.455 0.00 0.00 43.47 3.77
2407 2740 3.788227 AGTGTCAATGGAAGCTACCAA 57.212 42.857 0.00 0.00 43.47 3.67
2408 2741 3.838317 AGTAGTGTCAATGGAAGCTACCA 59.162 43.478 8.10 0.00 44.41 3.25
2409 2742 4.473477 AGTAGTGTCAATGGAAGCTACC 57.527 45.455 8.10 0.00 35.14 3.18
2410 2743 4.631813 CCAAGTAGTGTCAATGGAAGCTAC 59.368 45.833 0.00 4.84 34.96 3.58
2411 2744 4.832248 CCAAGTAGTGTCAATGGAAGCTA 58.168 43.478 0.00 0.00 32.82 3.32
2412 2745 3.679389 CCAAGTAGTGTCAATGGAAGCT 58.321 45.455 0.00 0.00 32.82 3.74
2413 2746 2.162408 GCCAAGTAGTGTCAATGGAAGC 59.838 50.000 0.00 0.00 32.82 3.86
2414 2747 2.416547 CGCCAAGTAGTGTCAATGGAAG 59.583 50.000 0.00 0.00 32.82 3.46
2415 2748 2.422597 CGCCAAGTAGTGTCAATGGAA 58.577 47.619 0.00 0.00 32.82 3.53
2416 2749 1.943968 GCGCCAAGTAGTGTCAATGGA 60.944 52.381 0.00 0.00 32.82 3.41
2417 2750 0.447801 GCGCCAAGTAGTGTCAATGG 59.552 55.000 0.00 0.00 0.00 3.16
2418 2751 1.155889 TGCGCCAAGTAGTGTCAATG 58.844 50.000 4.18 0.00 0.00 2.82
2419 2752 2.113860 ATGCGCCAAGTAGTGTCAAT 57.886 45.000 4.18 0.00 0.00 2.57
2420 2753 2.753055 TATGCGCCAAGTAGTGTCAA 57.247 45.000 4.18 0.00 0.00 3.18
2421 2754 2.979814 ATATGCGCCAAGTAGTGTCA 57.020 45.000 4.18 0.00 0.00 3.58
2422 2755 4.810790 AGATATATGCGCCAAGTAGTGTC 58.189 43.478 4.18 0.00 0.00 3.67
2423 2756 4.873746 AGATATATGCGCCAAGTAGTGT 57.126 40.909 4.18 0.00 0.00 3.55
2424 2757 5.473931 AGAAGATATATGCGCCAAGTAGTG 58.526 41.667 4.18 0.00 0.00 2.74
2425 2758 5.336849 GGAGAAGATATATGCGCCAAGTAGT 60.337 44.000 4.18 0.00 0.00 2.73
2426 2759 5.105752 GGAGAAGATATATGCGCCAAGTAG 58.894 45.833 4.18 0.00 0.00 2.57
2427 2760 4.526650 TGGAGAAGATATATGCGCCAAGTA 59.473 41.667 4.18 0.00 0.00 2.24
2428 2761 3.324846 TGGAGAAGATATATGCGCCAAGT 59.675 43.478 4.18 0.00 0.00 3.16
2429 2762 3.930336 TGGAGAAGATATATGCGCCAAG 58.070 45.455 4.18 0.00 0.00 3.61
2430 2763 4.558226 ATGGAGAAGATATATGCGCCAA 57.442 40.909 4.76 0.00 34.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.