Multiple sequence alignment - TraesCS3D01G257100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G257100 chr3D 100.000 3025 0 0 1 3025 359510974 359513998 0.000000e+00 5587.0
1 TraesCS3D01G257100 chr3D 86.792 159 21 0 6 164 479732852 479732694 8.620000e-41 178.0
2 TraesCS3D01G257100 chr3D 90.909 55 5 0 421 475 454500001 454499947 1.160000e-09 75.0
3 TraesCS3D01G257100 chr3D 88.889 54 6 0 421 474 506871714 506871767 1.950000e-07 67.6
4 TraesCS3D01G257100 chr3D 87.273 55 7 0 421 475 5171121 5171067 2.520000e-06 63.9
5 TraesCS3D01G257100 chr3A 95.540 2556 71 14 492 3025 478910332 478912866 0.000000e+00 4048.0
6 TraesCS3D01G257100 chr3B 94.877 1952 70 11 340 2266 465501740 465503686 0.000000e+00 3024.0
7 TraesCS3D01G257100 chr3B 89.048 557 44 7 2486 3025 465503875 465504431 0.000000e+00 675.0
8 TraesCS3D01G257100 chr3B 92.593 162 10 2 2220 2381 465503691 465503850 6.520000e-57 231.0
9 TraesCS3D01G257100 chr3B 86.335 161 21 1 6 166 705458320 705458479 1.110000e-39 174.0
10 TraesCS3D01G257100 chr6A 89.308 159 17 0 6 164 217763544 217763702 1.840000e-47 200.0
11 TraesCS3D01G257100 chr6A 92.727 55 4 0 421 475 599801234 599801288 2.500000e-11 80.5
12 TraesCS3D01G257100 chr6D 88.679 159 18 0 6 164 225131631 225131473 8.560000e-46 195.0
13 TraesCS3D01G257100 chr1A 86.471 170 22 1 6 175 430367687 430367519 5.150000e-43 185.0
14 TraesCS3D01G257100 chr4D 86.875 160 21 0 6 165 255142156 255142315 2.400000e-41 180.0
15 TraesCS3D01G257100 chr4D 86.164 159 22 0 6 164 177297465 177297623 4.010000e-39 172.0
16 TraesCS3D01G257100 chr7D 87.097 155 20 0 10 164 280518599 280518753 3.100000e-40 176.0
17 TraesCS3D01G257100 chr7D 90.909 55 5 0 421 475 522880574 522880628 1.160000e-09 75.0
18 TraesCS3D01G257100 chr1D 86.164 159 22 0 6 164 258624973 258624815 4.010000e-39 172.0
19 TraesCS3D01G257100 chr6B 90.909 55 5 0 421 475 636979267 636979321 1.160000e-09 75.0
20 TraesCS3D01G257100 chr6B 95.455 44 2 0 421 464 701189472 701189515 1.500000e-08 71.3
21 TraesCS3D01G257100 chr5D 87.273 55 7 0 421 475 483622434 483622380 2.520000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G257100 chr3D 359510974 359513998 3024 False 5587 5587 100.000000 1 3025 1 chr3D.!!$F1 3024
1 TraesCS3D01G257100 chr3A 478910332 478912866 2534 False 4048 4048 95.540000 492 3025 1 chr3A.!!$F1 2533
2 TraesCS3D01G257100 chr3B 465501740 465504431 2691 False 1310 3024 92.172667 340 3025 3 chr3B.!!$F2 2685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.029167 TTTCGTGTGTGCATGTGCTG 59.971 50.0 6.55 0.0 42.66 4.41 F
165 166 0.164647 CGCAGCTCACAAGTAGCAAC 59.835 55.0 0.00 0.0 42.62 4.17 F
225 226 0.172352 GAGGTTGACAGAGAGGAGCG 59.828 60.0 0.00 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1555 1580 0.249398 GTCCTTCACGGTGGTAGCAT 59.751 55.000 8.5 0.0 0.0 3.79 R
1934 1959 1.299541 AGCTCGGTTGACAAAGTGTG 58.700 50.000 0.0 0.0 0.0 3.82 R
2156 2181 3.126858 TCATCAAATAGCAGGAAACGCAC 59.873 43.478 0.0 0.0 33.3 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.922267 CAACCGTATTTTGTTTCGTGTG 57.078 40.909 0.00 0.00 0.00 3.82
22 23 4.344448 CAACCGTATTTTGTTTCGTGTGT 58.656 39.130 0.00 0.00 0.00 3.72
23 24 3.942739 ACCGTATTTTGTTTCGTGTGTG 58.057 40.909 0.00 0.00 0.00 3.82
24 25 2.717011 CCGTATTTTGTTTCGTGTGTGC 59.283 45.455 0.00 0.00 0.00 4.57
25 26 3.355270 CGTATTTTGTTTCGTGTGTGCA 58.645 40.909 0.00 0.00 0.00 4.57
26 27 3.971871 CGTATTTTGTTTCGTGTGTGCAT 59.028 39.130 0.00 0.00 0.00 3.96
27 28 4.143844 CGTATTTTGTTTCGTGTGTGCATG 60.144 41.667 0.00 0.00 0.00 4.06
28 29 2.929531 TTTGTTTCGTGTGTGCATGT 57.070 40.000 0.00 0.00 33.51 3.21
29 30 2.185867 TTGTTTCGTGTGTGCATGTG 57.814 45.000 0.00 0.00 33.51 3.21
30 31 0.248417 TGTTTCGTGTGTGCATGTGC 60.248 50.000 0.00 0.00 42.50 4.57
31 32 0.029300 GTTTCGTGTGTGCATGTGCT 59.971 50.000 6.55 0.00 42.66 4.40
32 33 0.029167 TTTCGTGTGTGCATGTGCTG 59.971 50.000 6.55 0.00 42.66 4.41
42 43 3.143675 CATGTGCTGCTAACGAGGT 57.856 52.632 0.00 0.00 0.00 3.85
43 44 1.442769 CATGTGCTGCTAACGAGGTT 58.557 50.000 0.00 0.00 0.00 3.50
44 45 2.616960 CATGTGCTGCTAACGAGGTTA 58.383 47.619 0.00 0.00 0.00 2.85
45 46 3.198068 CATGTGCTGCTAACGAGGTTAT 58.802 45.455 0.00 0.00 0.00 1.89
46 47 2.616960 TGTGCTGCTAACGAGGTTATG 58.383 47.619 0.00 0.00 0.00 1.90
47 48 2.028476 TGTGCTGCTAACGAGGTTATGT 60.028 45.455 0.00 0.00 0.00 2.29
48 49 2.348666 GTGCTGCTAACGAGGTTATGTG 59.651 50.000 0.00 0.00 0.00 3.21
49 50 2.028476 TGCTGCTAACGAGGTTATGTGT 60.028 45.455 0.00 0.00 0.00 3.72
50 51 2.348666 GCTGCTAACGAGGTTATGTGTG 59.651 50.000 0.00 0.00 0.00 3.82
51 52 2.930040 CTGCTAACGAGGTTATGTGTGG 59.070 50.000 0.00 0.00 0.00 4.17
52 53 2.300723 TGCTAACGAGGTTATGTGTGGT 59.699 45.455 0.00 0.00 0.00 4.16
53 54 3.244284 TGCTAACGAGGTTATGTGTGGTT 60.244 43.478 0.00 0.00 0.00 3.67
54 55 3.370061 GCTAACGAGGTTATGTGTGGTTC 59.630 47.826 0.00 0.00 0.00 3.62
55 56 3.764237 AACGAGGTTATGTGTGGTTCT 57.236 42.857 0.00 0.00 0.00 3.01
56 57 3.314541 ACGAGGTTATGTGTGGTTCTC 57.685 47.619 0.00 0.00 0.00 2.87
57 58 2.028385 ACGAGGTTATGTGTGGTTCTCC 60.028 50.000 0.00 0.00 0.00 3.71
58 59 2.233922 CGAGGTTATGTGTGGTTCTCCT 59.766 50.000 0.00 0.00 34.23 3.69
59 60 3.446161 CGAGGTTATGTGTGGTTCTCCTA 59.554 47.826 0.00 0.00 34.23 2.94
60 61 4.677250 CGAGGTTATGTGTGGTTCTCCTAC 60.677 50.000 0.00 0.00 34.23 3.18
61 62 4.426704 AGGTTATGTGTGGTTCTCCTACT 58.573 43.478 0.00 0.00 34.23 2.57
62 63 4.223032 AGGTTATGTGTGGTTCTCCTACTG 59.777 45.833 0.00 0.00 34.23 2.74
63 64 4.504858 GTTATGTGTGGTTCTCCTACTGG 58.495 47.826 0.00 0.00 34.23 4.00
64 65 2.391926 TGTGTGGTTCTCCTACTGGA 57.608 50.000 0.00 0.00 40.69 3.86
65 66 2.902608 TGTGTGGTTCTCCTACTGGAT 58.097 47.619 0.00 0.00 42.29 3.41
66 67 3.248024 TGTGTGGTTCTCCTACTGGATT 58.752 45.455 0.00 0.00 42.29 3.01
67 68 3.007940 TGTGTGGTTCTCCTACTGGATTG 59.992 47.826 0.00 0.00 42.29 2.67
68 69 3.260884 GTGTGGTTCTCCTACTGGATTGA 59.739 47.826 0.00 0.00 42.29 2.57
69 70 4.080863 GTGTGGTTCTCCTACTGGATTGAT 60.081 45.833 0.00 0.00 42.29 2.57
70 71 5.128827 GTGTGGTTCTCCTACTGGATTGATA 59.871 44.000 0.00 0.00 42.29 2.15
71 72 5.724370 TGTGGTTCTCCTACTGGATTGATAA 59.276 40.000 0.00 0.00 42.29 1.75
72 73 6.049790 GTGGTTCTCCTACTGGATTGATAAC 58.950 44.000 0.00 0.00 42.29 1.89
73 74 5.964477 TGGTTCTCCTACTGGATTGATAACT 59.036 40.000 0.00 0.00 42.29 2.24
74 75 6.443849 TGGTTCTCCTACTGGATTGATAACTT 59.556 38.462 0.00 0.00 42.29 2.66
75 76 7.037586 TGGTTCTCCTACTGGATTGATAACTTT 60.038 37.037 0.00 0.00 42.29 2.66
76 77 7.281100 GGTTCTCCTACTGGATTGATAACTTTG 59.719 40.741 0.00 0.00 42.29 2.77
77 78 6.889198 TCTCCTACTGGATTGATAACTTTGG 58.111 40.000 0.00 0.00 42.29 3.28
78 79 6.443849 TCTCCTACTGGATTGATAACTTTGGT 59.556 38.462 0.00 0.00 42.29 3.67
79 80 7.027874 TCCTACTGGATTGATAACTTTGGTT 57.972 36.000 0.00 0.00 37.46 3.67
80 81 7.110155 TCCTACTGGATTGATAACTTTGGTTC 58.890 38.462 0.00 0.00 37.46 3.62
81 82 7.037586 TCCTACTGGATTGATAACTTTGGTTCT 60.038 37.037 0.00 0.00 37.46 3.01
82 83 7.611855 CCTACTGGATTGATAACTTTGGTTCTT 59.388 37.037 0.00 0.00 34.60 2.52
83 84 9.667107 CTACTGGATTGATAACTTTGGTTCTTA 57.333 33.333 0.00 0.00 36.92 2.10
84 85 8.934023 ACTGGATTGATAACTTTGGTTCTTAA 57.066 30.769 0.00 0.00 36.92 1.85
85 86 9.533831 ACTGGATTGATAACTTTGGTTCTTAAT 57.466 29.630 0.00 0.00 36.92 1.40
122 123 7.929941 TTATGTTTACTGTATTGCATCACCA 57.070 32.000 0.00 0.00 0.00 4.17
123 124 8.518430 TTATGTTTACTGTATTGCATCACCAT 57.482 30.769 0.00 0.00 0.00 3.55
124 125 6.435430 TGTTTACTGTATTGCATCACCATC 57.565 37.500 0.00 0.00 0.00 3.51
125 126 6.179756 TGTTTACTGTATTGCATCACCATCT 58.820 36.000 0.00 0.00 0.00 2.90
126 127 6.316140 TGTTTACTGTATTGCATCACCATCTC 59.684 38.462 0.00 0.00 0.00 2.75
127 128 3.813443 ACTGTATTGCATCACCATCTCC 58.187 45.455 0.00 0.00 0.00 3.71
128 129 3.457380 ACTGTATTGCATCACCATCTCCT 59.543 43.478 0.00 0.00 0.00 3.69
129 130 4.080129 ACTGTATTGCATCACCATCTCCTT 60.080 41.667 0.00 0.00 0.00 3.36
130 131 4.858850 TGTATTGCATCACCATCTCCTTT 58.141 39.130 0.00 0.00 0.00 3.11
131 132 5.263599 TGTATTGCATCACCATCTCCTTTT 58.736 37.500 0.00 0.00 0.00 2.27
132 133 4.996788 ATTGCATCACCATCTCCTTTTC 57.003 40.909 0.00 0.00 0.00 2.29
133 134 2.358957 TGCATCACCATCTCCTTTTCG 58.641 47.619 0.00 0.00 0.00 3.46
134 135 2.027285 TGCATCACCATCTCCTTTTCGA 60.027 45.455 0.00 0.00 0.00 3.71
135 136 3.009723 GCATCACCATCTCCTTTTCGAA 58.990 45.455 0.00 0.00 0.00 3.71
136 137 3.064545 GCATCACCATCTCCTTTTCGAAG 59.935 47.826 0.00 0.00 0.00 3.79
137 138 4.507710 CATCACCATCTCCTTTTCGAAGA 58.492 43.478 0.00 0.00 0.00 2.87
138 139 4.617253 TCACCATCTCCTTTTCGAAGAA 57.383 40.909 0.00 0.00 45.90 2.52
139 140 4.968259 TCACCATCTCCTTTTCGAAGAAA 58.032 39.130 0.00 0.00 45.90 2.52
140 141 5.560724 TCACCATCTCCTTTTCGAAGAAAT 58.439 37.500 0.00 0.00 45.90 2.17
141 142 5.643777 TCACCATCTCCTTTTCGAAGAAATC 59.356 40.000 0.00 0.00 45.90 2.17
142 143 4.944317 ACCATCTCCTTTTCGAAGAAATCC 59.056 41.667 0.00 0.00 45.90 3.01
143 144 4.336713 CCATCTCCTTTTCGAAGAAATCCC 59.663 45.833 0.00 0.00 45.90 3.85
144 145 4.910458 TCTCCTTTTCGAAGAAATCCCT 57.090 40.909 0.00 0.00 45.90 4.20
145 146 6.349300 CATCTCCTTTTCGAAGAAATCCCTA 58.651 40.000 0.00 0.00 45.90 3.53
146 147 5.731591 TCTCCTTTTCGAAGAAATCCCTAC 58.268 41.667 0.00 0.00 45.90 3.18
147 148 4.501071 TCCTTTTCGAAGAAATCCCTACG 58.499 43.478 0.00 0.00 45.90 3.51
148 149 3.063588 CCTTTTCGAAGAAATCCCTACGC 59.936 47.826 0.00 0.00 45.90 4.42
149 150 3.322211 TTTCGAAGAAATCCCTACGCA 57.678 42.857 0.00 0.00 45.90 5.24
150 151 2.579207 TCGAAGAAATCCCTACGCAG 57.421 50.000 0.00 0.00 0.00 5.18
151 152 0.931005 CGAAGAAATCCCTACGCAGC 59.069 55.000 0.00 0.00 0.00 5.25
152 153 1.471676 CGAAGAAATCCCTACGCAGCT 60.472 52.381 0.00 0.00 0.00 4.24
153 154 2.205911 GAAGAAATCCCTACGCAGCTC 58.794 52.381 0.00 0.00 0.00 4.09
154 155 1.195115 AGAAATCCCTACGCAGCTCA 58.805 50.000 0.00 0.00 0.00 4.26
155 156 1.134670 AGAAATCCCTACGCAGCTCAC 60.135 52.381 0.00 0.00 0.00 3.51
156 157 0.613260 AAATCCCTACGCAGCTCACA 59.387 50.000 0.00 0.00 0.00 3.58
157 158 0.613260 AATCCCTACGCAGCTCACAA 59.387 50.000 0.00 0.00 0.00 3.33
158 159 0.176680 ATCCCTACGCAGCTCACAAG 59.823 55.000 0.00 0.00 0.00 3.16
159 160 1.185618 TCCCTACGCAGCTCACAAGT 61.186 55.000 0.00 0.00 0.00 3.16
160 161 0.530744 CCCTACGCAGCTCACAAGTA 59.469 55.000 0.00 0.00 0.00 2.24
161 162 1.469940 CCCTACGCAGCTCACAAGTAG 60.470 57.143 0.00 0.00 35.75 2.57
162 163 1.272781 CTACGCAGCTCACAAGTAGC 58.727 55.000 0.00 0.00 40.40 3.58
163 164 0.601057 TACGCAGCTCACAAGTAGCA 59.399 50.000 0.00 0.00 42.62 3.49
164 165 0.249868 ACGCAGCTCACAAGTAGCAA 60.250 50.000 0.00 0.00 42.62 3.91
165 166 0.164647 CGCAGCTCACAAGTAGCAAC 59.835 55.000 0.00 0.00 42.62 4.17
166 167 0.164647 GCAGCTCACAAGTAGCAACG 59.835 55.000 0.00 0.00 42.62 4.10
167 168 0.164647 CAGCTCACAAGTAGCAACGC 59.835 55.000 0.00 0.00 42.62 4.84
168 169 0.951040 AGCTCACAAGTAGCAACGCC 60.951 55.000 0.00 0.00 42.62 5.68
169 170 1.781555 CTCACAAGTAGCAACGCCG 59.218 57.895 0.00 0.00 0.00 6.46
170 171 0.944311 CTCACAAGTAGCAACGCCGT 60.944 55.000 0.00 0.00 0.00 5.68
171 172 0.314618 TCACAAGTAGCAACGCCGTA 59.685 50.000 0.00 0.00 0.00 4.02
172 173 0.713883 CACAAGTAGCAACGCCGTAG 59.286 55.000 0.00 0.00 0.00 3.51
173 174 1.012486 ACAAGTAGCAACGCCGTAGC 61.012 55.000 0.00 0.00 0.00 3.58
174 175 1.011968 CAAGTAGCAACGCCGTAGCA 61.012 55.000 0.00 0.00 39.83 3.49
175 176 0.736325 AAGTAGCAACGCCGTAGCAG 60.736 55.000 0.00 0.00 39.83 4.24
176 177 2.508439 TAGCAACGCCGTAGCAGC 60.508 61.111 0.00 0.00 39.83 5.25
194 195 4.891727 CGGATCCGGGGTTGAGCG 62.892 72.222 26.95 0.00 35.56 5.03
203 204 4.329545 GGTTGAGCGCCACTCCCA 62.330 66.667 2.29 0.00 45.61 4.37
204 205 2.743928 GTTGAGCGCCACTCCCAG 60.744 66.667 2.29 0.00 45.61 4.45
205 206 4.020617 TTGAGCGCCACTCCCAGG 62.021 66.667 2.29 0.00 45.61 4.45
215 216 4.232905 CTCCCAGGGAGGTTGACA 57.767 61.111 26.87 0.00 45.43 3.58
216 217 1.986413 CTCCCAGGGAGGTTGACAG 59.014 63.158 26.87 0.00 45.43 3.51
217 218 0.545309 CTCCCAGGGAGGTTGACAGA 60.545 60.000 26.87 0.00 45.43 3.41
218 219 0.545309 TCCCAGGGAGGTTGACAGAG 60.545 60.000 3.01 0.00 34.66 3.35
219 220 0.545309 CCCAGGGAGGTTGACAGAGA 60.545 60.000 0.00 0.00 34.66 3.10
220 221 0.901124 CCAGGGAGGTTGACAGAGAG 59.099 60.000 0.00 0.00 0.00 3.20
221 222 0.901124 CAGGGAGGTTGACAGAGAGG 59.099 60.000 0.00 0.00 0.00 3.69
222 223 0.787084 AGGGAGGTTGACAGAGAGGA 59.213 55.000 0.00 0.00 0.00 3.71
223 224 1.190643 GGGAGGTTGACAGAGAGGAG 58.809 60.000 0.00 0.00 0.00 3.69
224 225 0.534873 GGAGGTTGACAGAGAGGAGC 59.465 60.000 0.00 0.00 0.00 4.70
225 226 0.172352 GAGGTTGACAGAGAGGAGCG 59.828 60.000 0.00 0.00 0.00 5.03
226 227 1.216710 GGTTGACAGAGAGGAGCGG 59.783 63.158 0.00 0.00 0.00 5.52
227 228 1.251527 GGTTGACAGAGAGGAGCGGA 61.252 60.000 0.00 0.00 0.00 5.54
228 229 0.820871 GTTGACAGAGAGGAGCGGAT 59.179 55.000 0.00 0.00 0.00 4.18
229 230 0.820226 TTGACAGAGAGGAGCGGATG 59.180 55.000 0.00 0.00 0.00 3.51
230 231 1.039785 TGACAGAGAGGAGCGGATGG 61.040 60.000 0.00 0.00 0.00 3.51
231 232 2.362329 GACAGAGAGGAGCGGATGGC 62.362 65.000 0.00 0.00 44.05 4.40
252 253 2.674754 GGCAACGAAGGATGGGGA 59.325 61.111 0.00 0.00 0.00 4.81
253 254 1.452108 GGCAACGAAGGATGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
254 255 2.115291 GCAACGAAGGATGGGGAGC 61.115 63.158 0.00 0.00 0.00 4.70
255 256 1.815421 CAACGAAGGATGGGGAGCG 60.815 63.158 0.00 0.00 0.00 5.03
256 257 3.682292 AACGAAGGATGGGGAGCGC 62.682 63.158 0.00 0.00 0.00 5.92
257 258 4.161295 CGAAGGATGGGGAGCGCA 62.161 66.667 11.47 0.00 0.00 6.09
258 259 2.203126 GAAGGATGGGGAGCGCAG 60.203 66.667 11.47 0.00 0.00 5.18
312 313 4.994471 CCACAGCTGCACAGGCGA 62.994 66.667 15.27 0.00 45.35 5.54
313 314 2.974148 CACAGCTGCACAGGCGAA 60.974 61.111 15.27 0.00 45.35 4.70
314 315 2.667536 ACAGCTGCACAGGCGAAG 60.668 61.111 15.27 0.00 45.35 3.79
366 367 4.452733 GGCGGGTCTTGGACGGAG 62.453 72.222 0.00 0.00 32.65 4.63
371 372 1.142097 GGTCTTGGACGGAGCTAGC 59.858 63.158 6.62 6.62 32.65 3.42
378 379 0.595310 GGACGGAGCTAGCGATTCAC 60.595 60.000 9.55 0.90 0.00 3.18
419 420 4.189188 CGACGCGGGGTAGAGTGG 62.189 72.222 12.47 0.00 0.00 4.00
456 457 5.359576 TGCCTCAAACTACTTTTTGTCATGT 59.640 36.000 0.00 0.00 37.66 3.21
462 463 8.289618 TCAAACTACTTTTTGTCATGTAGCATC 58.710 33.333 0.00 0.00 37.66 3.91
464 465 7.986085 ACTACTTTTTGTCATGTAGCATCTT 57.014 32.000 0.00 0.00 36.72 2.40
469 470 9.236006 ACTTTTTGTCATGTAGCATCTTTATCT 57.764 29.630 0.00 0.00 0.00 1.98
499 500 0.916086 TCCAAGGCCGGTATTGTCAT 59.084 50.000 16.41 0.00 0.00 3.06
706 711 1.243902 GACGTCTTCCATTTGCCCAA 58.756 50.000 8.70 0.00 0.00 4.12
820 827 1.480954 TCAGACTGGCCGAGAATAACC 59.519 52.381 1.81 0.00 0.00 2.85
877 884 1.078214 CCACACGTCATGGAGCCAT 60.078 57.895 9.41 0.00 39.87 4.40
906 913 0.798776 GCGCATCCAGATATTTCCGG 59.201 55.000 0.30 0.00 0.00 5.14
909 916 1.271597 GCATCCAGATATTTCCGGGCT 60.272 52.381 0.00 0.00 0.00 5.19
1089 1114 3.001406 AAACCCTCGTCTCCCCCG 61.001 66.667 0.00 0.00 0.00 5.73
1530 1555 0.814457 GCTCAAGCTCGAGAAGGAGA 59.186 55.000 18.75 5.03 36.08 3.71
1569 1594 2.889617 CCGATGCTACCACCGTGA 59.110 61.111 0.00 0.00 0.00 4.35
1934 1959 2.671396 GGTGGTGACGATGAATGTGTAC 59.329 50.000 0.00 0.00 0.00 2.90
1953 1978 1.299541 CACACTTTGTCAACCGAGCT 58.700 50.000 0.00 0.00 0.00 4.09
2044 2069 9.993454 TTATTTCTGTCTCTGATCTATCCATTG 57.007 33.333 0.00 0.00 0.00 2.82
2286 2362 0.610509 ATTTGGTGCCGTGGTATGCA 60.611 50.000 0.00 0.00 34.54 3.96
2357 2433 7.270757 TGATTGCTGTTTAAACTGAAAGCTA 57.729 32.000 25.42 19.15 37.60 3.32
2359 2435 5.432885 TGCTGTTTAAACTGAAAGCTACC 57.567 39.130 24.44 8.30 37.60 3.18
2387 2463 6.655078 ACAGTACTTCCTTTGCAAAATGAT 57.345 33.333 13.84 2.14 0.00 2.45
2418 2494 0.846693 ATCTGGATTTCCCCTTCCGG 59.153 55.000 0.00 0.00 39.38 5.14
2673 2751 1.097547 CGTGAATGGTCATGCCCTCC 61.098 60.000 0.00 0.00 35.80 4.30
2786 2865 8.893727 CAACTGTATGCTTTAGGCTTAAGTTAT 58.106 33.333 14.11 11.23 42.39 1.89
2918 3011 3.534554 TGTACTCTTGGCATGCTGTATG 58.465 45.455 18.92 8.20 39.88 2.39
2921 3014 3.012518 ACTCTTGGCATGCTGTATGTTC 58.987 45.455 18.92 0.00 39.08 3.18
2978 3071 6.371825 AGGCTTAAGTTACTTGAGTTATGCAC 59.628 38.462 16.37 0.67 37.34 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.203361 CACACACGAAACAAAATACGGTTG 59.797 41.667 0.00 0.00 0.00 3.77
3 4 2.717011 GCACACACGAAACAAAATACGG 59.283 45.455 0.00 0.00 0.00 4.02
4 5 3.355270 TGCACACACGAAACAAAATACG 58.645 40.909 0.00 0.00 0.00 3.06
6 7 4.737279 CACATGCACACACGAAACAAAATA 59.263 37.500 0.00 0.00 0.00 1.40
10 11 1.796982 GCACATGCACACACGAAACAA 60.797 47.619 0.00 0.00 41.59 2.83
11 12 0.248417 GCACATGCACACACGAAACA 60.248 50.000 0.00 0.00 41.59 2.83
12 13 0.029300 AGCACATGCACACACGAAAC 59.971 50.000 6.64 0.00 45.16 2.78
13 14 0.029167 CAGCACATGCACACACGAAA 59.971 50.000 6.64 0.00 45.16 3.46
14 15 1.648174 CAGCACATGCACACACGAA 59.352 52.632 6.64 0.00 45.16 3.85
15 16 3.332366 CAGCACATGCACACACGA 58.668 55.556 6.64 0.00 45.16 4.35
24 25 1.442769 AACCTCGTTAGCAGCACATG 58.557 50.000 0.00 0.00 0.00 3.21
25 26 3.198068 CATAACCTCGTTAGCAGCACAT 58.802 45.455 0.00 0.00 31.29 3.21
26 27 2.028476 ACATAACCTCGTTAGCAGCACA 60.028 45.455 0.00 0.00 31.29 4.57
27 28 2.348666 CACATAACCTCGTTAGCAGCAC 59.651 50.000 0.00 0.00 31.29 4.40
28 29 2.028476 ACACATAACCTCGTTAGCAGCA 60.028 45.455 0.00 0.00 31.29 4.41
29 30 2.348666 CACACATAACCTCGTTAGCAGC 59.651 50.000 0.00 0.00 31.29 5.25
30 31 2.930040 CCACACATAACCTCGTTAGCAG 59.070 50.000 0.00 0.00 31.29 4.24
31 32 2.300723 ACCACACATAACCTCGTTAGCA 59.699 45.455 0.00 0.00 31.29 3.49
32 33 2.968675 ACCACACATAACCTCGTTAGC 58.031 47.619 0.00 0.00 31.29 3.09
33 34 4.817517 AGAACCACACATAACCTCGTTAG 58.182 43.478 0.00 0.00 31.29 2.34
34 35 4.322198 GGAGAACCACACATAACCTCGTTA 60.322 45.833 0.00 0.00 35.97 3.18
35 36 3.556423 GGAGAACCACACATAACCTCGTT 60.556 47.826 0.00 0.00 35.97 3.85
36 37 2.028385 GGAGAACCACACATAACCTCGT 60.028 50.000 0.00 0.00 35.97 4.18
37 38 2.233922 AGGAGAACCACACATAACCTCG 59.766 50.000 0.00 0.00 38.94 4.63
38 39 3.983044 AGGAGAACCACACATAACCTC 57.017 47.619 0.00 0.00 38.94 3.85
39 40 4.223032 CAGTAGGAGAACCACACATAACCT 59.777 45.833 0.00 0.00 38.94 3.50
40 41 4.504858 CAGTAGGAGAACCACACATAACC 58.495 47.826 0.00 0.00 38.94 2.85
41 42 4.222145 TCCAGTAGGAGAACCACACATAAC 59.778 45.833 0.00 0.00 39.61 1.89
42 43 4.422057 TCCAGTAGGAGAACCACACATAA 58.578 43.478 0.00 0.00 39.61 1.90
43 44 4.055710 TCCAGTAGGAGAACCACACATA 57.944 45.455 0.00 0.00 39.61 2.29
44 45 2.902608 TCCAGTAGGAGAACCACACAT 58.097 47.619 0.00 0.00 39.61 3.21
45 46 2.391926 TCCAGTAGGAGAACCACACA 57.608 50.000 0.00 0.00 39.61 3.72
53 54 7.037586 AACCAAAGTTATCAATCCAGTAGGAGA 60.038 37.037 0.00 0.00 40.30 3.71
54 55 7.112779 AACCAAAGTTATCAATCCAGTAGGAG 58.887 38.462 0.00 0.00 40.30 3.69
55 56 7.027874 AACCAAAGTTATCAATCCAGTAGGA 57.972 36.000 0.00 0.00 40.92 2.94
56 57 7.112779 AGAACCAAAGTTATCAATCCAGTAGG 58.887 38.462 0.00 0.00 35.94 3.18
57 58 8.567285 AAGAACCAAAGTTATCAATCCAGTAG 57.433 34.615 0.00 0.00 35.94 2.57
59 60 8.934023 TTAAGAACCAAAGTTATCAATCCAGT 57.066 30.769 0.00 0.00 35.94 4.00
96 97 8.965819 TGGTGATGCAATACAGTAAACATAATT 58.034 29.630 0.00 0.00 0.00 1.40
97 98 8.518430 TGGTGATGCAATACAGTAAACATAAT 57.482 30.769 0.00 0.00 0.00 1.28
98 99 7.929941 TGGTGATGCAATACAGTAAACATAA 57.070 32.000 0.00 0.00 0.00 1.90
99 100 7.992608 AGATGGTGATGCAATACAGTAAACATA 59.007 33.333 0.00 0.00 0.00 2.29
100 101 6.830324 AGATGGTGATGCAATACAGTAAACAT 59.170 34.615 0.00 0.00 0.00 2.71
101 102 6.179756 AGATGGTGATGCAATACAGTAAACA 58.820 36.000 0.00 0.00 0.00 2.83
102 103 6.238484 GGAGATGGTGATGCAATACAGTAAAC 60.238 42.308 0.00 0.00 0.00 2.01
103 104 5.822519 GGAGATGGTGATGCAATACAGTAAA 59.177 40.000 0.00 0.00 0.00 2.01
104 105 5.130975 AGGAGATGGTGATGCAATACAGTAA 59.869 40.000 0.00 0.00 0.00 2.24
105 106 4.655649 AGGAGATGGTGATGCAATACAGTA 59.344 41.667 0.00 0.00 0.00 2.74
106 107 3.457380 AGGAGATGGTGATGCAATACAGT 59.543 43.478 0.00 0.00 0.00 3.55
107 108 4.082665 AGGAGATGGTGATGCAATACAG 57.917 45.455 0.00 0.00 0.00 2.74
108 109 4.508551 AAGGAGATGGTGATGCAATACA 57.491 40.909 0.00 0.00 0.00 2.29
109 110 5.504665 CGAAAAGGAGATGGTGATGCAATAC 60.505 44.000 0.00 0.00 0.00 1.89
110 111 4.576053 CGAAAAGGAGATGGTGATGCAATA 59.424 41.667 0.00 0.00 0.00 1.90
111 112 3.379372 CGAAAAGGAGATGGTGATGCAAT 59.621 43.478 0.00 0.00 0.00 3.56
112 113 2.749076 CGAAAAGGAGATGGTGATGCAA 59.251 45.455 0.00 0.00 0.00 4.08
113 114 2.027285 TCGAAAAGGAGATGGTGATGCA 60.027 45.455 0.00 0.00 0.00 3.96
114 115 2.632377 TCGAAAAGGAGATGGTGATGC 58.368 47.619 0.00 0.00 0.00 3.91
115 116 4.507710 TCTTCGAAAAGGAGATGGTGATG 58.492 43.478 0.00 0.00 33.03 3.07
116 117 4.826274 TCTTCGAAAAGGAGATGGTGAT 57.174 40.909 0.00 0.00 33.03 3.06
117 118 4.617253 TTCTTCGAAAAGGAGATGGTGA 57.383 40.909 0.00 0.00 33.03 4.02
118 119 5.163713 GGATTTCTTCGAAAAGGAGATGGTG 60.164 44.000 0.00 0.00 33.03 4.17
119 120 4.944317 GGATTTCTTCGAAAAGGAGATGGT 59.056 41.667 0.00 0.00 33.03 3.55
120 121 4.336713 GGGATTTCTTCGAAAAGGAGATGG 59.663 45.833 0.00 0.00 33.03 3.51
121 122 5.189180 AGGGATTTCTTCGAAAAGGAGATG 58.811 41.667 0.00 0.00 33.03 2.90
122 123 5.443230 AGGGATTTCTTCGAAAAGGAGAT 57.557 39.130 0.00 0.00 33.03 2.75
123 124 4.910458 AGGGATTTCTTCGAAAAGGAGA 57.090 40.909 0.00 0.00 33.03 3.71
124 125 4.567159 CGTAGGGATTTCTTCGAAAAGGAG 59.433 45.833 0.00 0.00 33.03 3.69
125 126 4.501071 CGTAGGGATTTCTTCGAAAAGGA 58.499 43.478 0.00 0.00 33.03 3.36
126 127 3.063588 GCGTAGGGATTTCTTCGAAAAGG 59.936 47.826 0.00 0.00 33.03 3.11
127 128 3.682858 TGCGTAGGGATTTCTTCGAAAAG 59.317 43.478 0.00 0.00 30.77 2.27
128 129 3.666274 TGCGTAGGGATTTCTTCGAAAA 58.334 40.909 0.00 0.00 30.77 2.29
129 130 3.259064 CTGCGTAGGGATTTCTTCGAAA 58.741 45.455 0.00 0.00 30.77 3.46
130 131 2.888594 CTGCGTAGGGATTTCTTCGAA 58.111 47.619 0.00 0.00 30.77 3.71
131 132 1.470979 GCTGCGTAGGGATTTCTTCGA 60.471 52.381 1.76 0.00 30.77 3.71
132 133 0.931005 GCTGCGTAGGGATTTCTTCG 59.069 55.000 1.76 0.00 0.00 3.79
133 134 2.205911 GAGCTGCGTAGGGATTTCTTC 58.794 52.381 1.76 0.00 0.00 2.87
134 135 1.555075 TGAGCTGCGTAGGGATTTCTT 59.445 47.619 1.76 0.00 0.00 2.52
135 136 1.134670 GTGAGCTGCGTAGGGATTTCT 60.135 52.381 1.76 0.00 0.00 2.52
136 137 1.291132 GTGAGCTGCGTAGGGATTTC 58.709 55.000 1.76 0.00 0.00 2.17
137 138 0.613260 TGTGAGCTGCGTAGGGATTT 59.387 50.000 1.76 0.00 0.00 2.17
138 139 0.613260 TTGTGAGCTGCGTAGGGATT 59.387 50.000 1.76 0.00 0.00 3.01
139 140 0.176680 CTTGTGAGCTGCGTAGGGAT 59.823 55.000 1.76 0.00 0.00 3.85
140 141 1.185618 ACTTGTGAGCTGCGTAGGGA 61.186 55.000 1.76 0.00 0.00 4.20
141 142 0.530744 TACTTGTGAGCTGCGTAGGG 59.469 55.000 1.76 0.00 0.00 3.53
142 143 1.914634 CTACTTGTGAGCTGCGTAGG 58.085 55.000 1.76 0.00 0.00 3.18
143 144 1.272781 GCTACTTGTGAGCTGCGTAG 58.727 55.000 0.00 0.00 36.96 3.51
144 145 0.601057 TGCTACTTGTGAGCTGCGTA 59.399 50.000 0.00 0.00 40.76 4.42
145 146 0.249868 TTGCTACTTGTGAGCTGCGT 60.250 50.000 0.00 0.00 40.76 5.24
146 147 0.164647 GTTGCTACTTGTGAGCTGCG 59.835 55.000 0.00 0.00 40.76 5.18
147 148 0.164647 CGTTGCTACTTGTGAGCTGC 59.835 55.000 0.00 0.00 40.76 5.25
148 149 0.164647 GCGTTGCTACTTGTGAGCTG 59.835 55.000 0.00 0.00 40.76 4.24
149 150 0.951040 GGCGTTGCTACTTGTGAGCT 60.951 55.000 0.00 0.00 40.76 4.09
150 151 1.497722 GGCGTTGCTACTTGTGAGC 59.502 57.895 0.00 0.00 40.53 4.26
151 152 0.944311 ACGGCGTTGCTACTTGTGAG 60.944 55.000 6.77 0.00 0.00 3.51
152 153 0.314618 TACGGCGTTGCTACTTGTGA 59.685 50.000 21.24 0.00 0.00 3.58
153 154 0.713883 CTACGGCGTTGCTACTTGTG 59.286 55.000 21.24 0.00 0.00 3.33
154 155 1.012486 GCTACGGCGTTGCTACTTGT 61.012 55.000 32.96 1.80 32.12 3.16
155 156 1.011968 TGCTACGGCGTTGCTACTTG 61.012 55.000 37.19 12.84 42.25 3.16
156 157 0.736325 CTGCTACGGCGTTGCTACTT 60.736 55.000 37.19 7.78 42.25 2.24
157 158 1.153823 CTGCTACGGCGTTGCTACT 60.154 57.895 37.19 8.53 42.25 2.57
158 159 2.799540 GCTGCTACGGCGTTGCTAC 61.800 63.158 37.19 27.66 42.25 3.58
159 160 2.508439 GCTGCTACGGCGTTGCTA 60.508 61.111 37.19 25.46 42.25 3.49
177 178 4.891727 CGCTCAACCCCGGATCCG 62.892 72.222 27.65 27.65 39.44 4.18
186 187 4.329545 TGGGAGTGGCGCTCAACC 62.330 66.667 27.61 20.55 45.88 3.77
187 188 2.743928 CTGGGAGTGGCGCTCAAC 60.744 66.667 27.61 19.88 45.88 3.18
188 189 4.020617 CCTGGGAGTGGCGCTCAA 62.021 66.667 27.61 15.11 45.88 3.02
199 200 0.545309 CTCTGTCAACCTCCCTGGGA 60.545 60.000 16.13 16.13 41.11 4.37
200 201 0.545309 TCTCTGTCAACCTCCCTGGG 60.545 60.000 6.33 6.33 41.11 4.45
201 202 0.901124 CTCTCTGTCAACCTCCCTGG 59.099 60.000 0.00 0.00 42.93 4.45
202 203 0.901124 CCTCTCTGTCAACCTCCCTG 59.099 60.000 0.00 0.00 0.00 4.45
203 204 0.787084 TCCTCTCTGTCAACCTCCCT 59.213 55.000 0.00 0.00 0.00 4.20
204 205 1.190643 CTCCTCTCTGTCAACCTCCC 58.809 60.000 0.00 0.00 0.00 4.30
205 206 0.534873 GCTCCTCTCTGTCAACCTCC 59.465 60.000 0.00 0.00 0.00 4.30
206 207 0.172352 CGCTCCTCTCTGTCAACCTC 59.828 60.000 0.00 0.00 0.00 3.85
207 208 1.254284 CCGCTCCTCTCTGTCAACCT 61.254 60.000 0.00 0.00 0.00 3.50
208 209 1.216710 CCGCTCCTCTCTGTCAACC 59.783 63.158 0.00 0.00 0.00 3.77
209 210 0.820871 ATCCGCTCCTCTCTGTCAAC 59.179 55.000 0.00 0.00 0.00 3.18
210 211 0.820226 CATCCGCTCCTCTCTGTCAA 59.180 55.000 0.00 0.00 0.00 3.18
211 212 1.039785 CCATCCGCTCCTCTCTGTCA 61.040 60.000 0.00 0.00 0.00 3.58
212 213 1.739049 CCATCCGCTCCTCTCTGTC 59.261 63.158 0.00 0.00 0.00 3.51
213 214 2.430610 GCCATCCGCTCCTCTCTGT 61.431 63.158 0.00 0.00 0.00 3.41
214 215 2.420890 GCCATCCGCTCCTCTCTG 59.579 66.667 0.00 0.00 0.00 3.35
215 216 3.222855 CGCCATCCGCTCCTCTCT 61.223 66.667 0.00 0.00 34.21 3.10
216 217 3.492311 GACGCCATCCGCTCCTCTC 62.492 68.421 0.00 0.00 41.76 3.20
217 218 3.532155 GACGCCATCCGCTCCTCT 61.532 66.667 0.00 0.00 41.76 3.69
218 219 4.933064 CGACGCCATCCGCTCCTC 62.933 72.222 0.00 0.00 41.76 3.71
232 233 2.106683 CCCATCCTTCGTTGCCGAC 61.107 63.158 0.00 0.00 44.13 4.79
233 234 2.267642 CCCATCCTTCGTTGCCGA 59.732 61.111 0.00 0.00 42.41 5.54
234 235 2.824041 CCCCATCCTTCGTTGCCG 60.824 66.667 0.00 0.00 0.00 5.69
235 236 1.452108 CTCCCCATCCTTCGTTGCC 60.452 63.158 0.00 0.00 0.00 4.52
236 237 2.115291 GCTCCCCATCCTTCGTTGC 61.115 63.158 0.00 0.00 0.00 4.17
237 238 1.815421 CGCTCCCCATCCTTCGTTG 60.815 63.158 0.00 0.00 0.00 4.10
238 239 2.584608 CGCTCCCCATCCTTCGTT 59.415 61.111 0.00 0.00 0.00 3.85
239 240 4.162690 GCGCTCCCCATCCTTCGT 62.163 66.667 0.00 0.00 0.00 3.85
240 241 4.161295 TGCGCTCCCCATCCTTCG 62.161 66.667 9.73 0.00 0.00 3.79
241 242 2.203126 CTGCGCTCCCCATCCTTC 60.203 66.667 9.73 0.00 0.00 3.46
242 243 4.496336 GCTGCGCTCCCCATCCTT 62.496 66.667 9.73 0.00 0.00 3.36
295 296 4.994471 TCGCCTGTGCAGCTGTGG 62.994 66.667 16.64 13.30 37.32 4.17
296 297 2.962827 CTTCGCCTGTGCAGCTGTG 61.963 63.158 16.64 3.51 37.32 3.66
297 298 2.667536 CTTCGCCTGTGCAGCTGT 60.668 61.111 16.64 0.00 37.32 4.40
298 299 4.099170 GCTTCGCCTGTGCAGCTG 62.099 66.667 10.11 10.11 34.56 4.24
349 350 4.452733 CTCCGTCCAAGACCCGCC 62.453 72.222 0.00 0.00 0.00 6.13
406 407 0.539986 TTGATTCCACTCTACCCCGC 59.460 55.000 0.00 0.00 0.00 6.13
410 411 5.698545 GCATCTACATTGATTCCACTCTACC 59.301 44.000 0.00 0.00 0.00 3.18
411 412 5.698545 GGCATCTACATTGATTCCACTCTAC 59.301 44.000 0.00 0.00 31.54 2.59
419 420 6.690194 AGTTTGAGGCATCTACATTGATTC 57.310 37.500 0.00 0.00 0.00 2.52
456 457 7.565398 GGAGGTCCCATATAGATAAAGATGCTA 59.435 40.741 0.00 0.00 34.14 3.49
462 463 6.577239 GCCTTGGAGGTCCCATATAGATAAAG 60.577 46.154 0.00 0.00 46.10 1.85
464 465 4.783227 GCCTTGGAGGTCCCATATAGATAA 59.217 45.833 0.00 0.00 46.10 1.75
469 470 1.742308 GGCCTTGGAGGTCCCATATA 58.258 55.000 0.00 0.00 46.10 0.86
475 476 1.632965 AATACCGGCCTTGGAGGTCC 61.633 60.000 0.00 0.00 36.37 4.46
820 827 0.875908 CATCGTGGCCATACCTGTCG 60.876 60.000 9.72 5.92 40.22 4.35
1101 1126 3.132139 CTTCTCGACCTCCGCGGA 61.132 66.667 29.03 29.03 38.37 5.54
1106 1131 2.185608 GCAGCCTTCTCGACCTCC 59.814 66.667 0.00 0.00 0.00 4.30
1555 1580 0.249398 GTCCTTCACGGTGGTAGCAT 59.751 55.000 8.50 0.00 0.00 3.79
1569 1594 2.204059 AGCAGCCTCCCTGTCCTT 60.204 61.111 0.00 0.00 43.71 3.36
1667 1692 2.125512 ATCAGAACGACGGCAGCC 60.126 61.111 0.00 0.00 0.00 4.85
1934 1959 1.299541 AGCTCGGTTGACAAAGTGTG 58.700 50.000 0.00 0.00 0.00 3.82
2044 2069 7.945134 AGAGATGCAAACCATTAATAACCATC 58.055 34.615 0.00 0.00 33.29 3.51
2156 2181 3.126858 TCATCAAATAGCAGGAAACGCAC 59.873 43.478 0.00 0.00 33.30 5.34
2266 2342 1.340114 TGCATACCACGGCACCAAATA 60.340 47.619 0.00 0.00 34.58 1.40
2267 2343 0.610509 TGCATACCACGGCACCAAAT 60.611 50.000 0.00 0.00 34.58 2.32
2286 2362 3.489355 TGTGCAGAAGGAACAACATCAT 58.511 40.909 0.00 0.00 0.00 2.45
2357 2433 5.442391 TGCAAAGGAAGTACTGTTAAAGGT 58.558 37.500 0.00 0.00 0.00 3.50
2359 2435 8.755018 CATTTTGCAAAGGAAGTACTGTTAAAG 58.245 33.333 12.41 0.00 0.00 1.85
2387 2463 6.554605 GGGGAAATCCAGATTCCATAAAATCA 59.445 38.462 7.53 0.00 37.98 2.57
2418 2494 2.604614 GGTCACACCAGCAACGAATTTC 60.605 50.000 0.00 0.00 38.42 2.17
2609 2687 2.536761 TACCGGTCACACAAGGAAAG 57.463 50.000 12.40 0.00 0.00 2.62
2673 2751 0.673333 TGCCAACCACATAGTCGCAG 60.673 55.000 0.00 0.00 0.00 5.18
2706 2784 5.335426 GCCTCATGTATAAATGTGATGCAGG 60.335 44.000 6.54 4.57 34.00 4.85
2786 2865 5.266733 GCAGATTAAATGCATCCCTCAAA 57.733 39.130 0.00 0.00 43.31 2.69
2918 3011 3.064207 TGCTAAACCAGTGATCACGAAC 58.936 45.455 19.85 6.05 36.20 3.95
2921 3014 3.067106 ACTTGCTAAACCAGTGATCACG 58.933 45.455 19.85 14.20 36.20 4.35
2978 3071 7.587392 CGGCATAACACATTTATACAGAACATG 59.413 37.037 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.