Multiple sequence alignment - TraesCS3D01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G257000 chr3D 100.000 7167 0 0 1 7167 359325179 359318013 0.000000e+00 13236.0
1 TraesCS3D01G257000 chr3D 92.265 181 11 3 579 757 83325115 83324936 3.320000e-63 254.0
2 TraesCS3D01G257000 chr3D 92.737 179 8 4 567 741 433194095 433193918 3.320000e-63 254.0
3 TraesCS3D01G257000 chr3D 92.655 177 10 2 568 741 346313706 346313530 1.190000e-62 252.0
4 TraesCS3D01G257000 chr3D 86.826 167 19 3 300 464 77192637 77192472 4.420000e-42 183.0
5 TraesCS3D01G257000 chr3D 88.750 80 3 4 3952 4028 359320740 359320664 7.660000e-15 93.5
6 TraesCS3D01G257000 chr3D 88.750 80 3 4 4440 4516 359321228 359321152 7.660000e-15 93.5
7 TraesCS3D01G257000 chr3B 94.760 3588 135 21 580 4157 465344776 465341232 0.000000e+00 5535.0
8 TraesCS3D01G257000 chr3B 96.741 1381 41 4 4249 5627 465341245 465339867 0.000000e+00 2298.0
9 TraesCS3D01G257000 chr3B 94.737 950 37 9 5561 6502 465339906 465338962 0.000000e+00 1465.0
10 TraesCS3D01G257000 chr3B 94.268 785 36 4 814 1590 465375284 465374501 0.000000e+00 1192.0
11 TraesCS3D01G257000 chr3B 83.924 790 71 20 4257 5040 465331030 465330291 0.000000e+00 704.0
12 TraesCS3D01G257000 chr3B 83.797 790 72 21 4257 5040 465277098 465276359 0.000000e+00 699.0
13 TraesCS3D01G257000 chr3B 90.578 467 30 6 1 457 465376149 465375687 2.210000e-169 606.0
14 TraesCS3D01G257000 chr3B 90.497 463 14 14 6729 7167 465338743 465338287 1.040000e-162 584.0
15 TraesCS3D01G257000 chr3B 88.298 470 41 6 2 461 465346382 465345917 1.050000e-152 551.0
16 TraesCS3D01G257000 chr3B 90.706 269 18 5 3877 4145 465277361 465277100 1.140000e-92 351.0
17 TraesCS3D01G257000 chr3B 90.706 269 18 5 3877 4145 465331293 465331032 1.140000e-92 351.0
18 TraesCS3D01G257000 chr3B 94.737 171 7 1 573 741 22525288 22525458 1.530000e-66 265.0
19 TraesCS3D01G257000 chr3B 87.391 230 22 4 3589 3818 465277583 465277361 2.570000e-64 257.0
20 TraesCS3D01G257000 chr3B 93.464 153 10 0 7015 7167 465218180 465218028 2.010000e-55 228.0
21 TraesCS3D01G257000 chr3B 93.464 153 10 0 7015 7167 465284589 465284437 2.010000e-55 228.0
22 TraesCS3D01G257000 chr3B 80.339 295 25 14 6107 6395 465276357 465276090 7.340000e-45 193.0
23 TraesCS3D01G257000 chr3B 80.000 295 26 14 6107 6395 465330289 465330022 3.410000e-43 187.0
24 TraesCS3D01G257000 chr3B 84.553 123 9 7 3914 4028 465341098 465340978 5.880000e-21 113.0
25 TraesCS3D01G257000 chr3B 82.759 116 9 7 4404 4516 465341468 465341361 7.660000e-15 93.5
26 TraesCS3D01G257000 chr3B 100.000 47 0 0 6671 6717 465338773 465338727 3.560000e-13 87.9
27 TraesCS3D01G257000 chr3B 91.111 45 2 2 6503 6547 465329420 465329378 7.760000e-05 60.2
28 TraesCS3D01G257000 chr3A 96.250 2560 78 10 1604 4158 478692284 478689738 0.000000e+00 4180.0
29 TraesCS3D01G257000 chr3A 95.348 2171 74 12 4249 6414 478689752 478687604 0.000000e+00 3424.0
30 TraesCS3D01G257000 chr3A 94.118 833 28 9 787 1609 478693363 478692542 0.000000e+00 1247.0
31 TraesCS3D01G257000 chr3A 87.547 795 62 14 4257 5040 478679180 478678412 0.000000e+00 885.0
32 TraesCS3D01G257000 chr3A 90.402 448 17 14 6729 7167 478682552 478682122 3.750000e-157 566.0
33 TraesCS3D01G257000 chr3A 91.822 269 20 1 3877 4145 478679448 478679182 2.440000e-99 374.0
34 TraesCS3D01G257000 chr3A 94.416 197 8 2 6974 7167 478675985 478675789 4.200000e-77 300.0
35 TraesCS3D01G257000 chr3A 91.713 181 13 1 566 744 542205938 542206118 4.290000e-62 250.0
36 TraesCS3D01G257000 chr3A 79.181 293 17 17 6107 6395 478678410 478678158 5.750000e-36 163.0
37 TraesCS3D01G257000 chr3A 88.750 80 3 4 4440 4516 478689944 478689868 7.660000e-15 93.5
38 TraesCS3D01G257000 chr3A 90.278 72 3 4 4431 4500 478679385 478679316 2.750000e-14 91.6
39 TraesCS3D01G257000 chr5D 93.605 172 9 1 572 741 423354220 423354049 9.230000e-64 255.0
40 TraesCS3D01G257000 chr5D 86.826 167 19 3 300 464 315881845 315882010 4.420000e-42 183.0
41 TraesCS3D01G257000 chr5D 92.500 120 7 2 450 569 505210221 505210338 3.440000e-38 171.0
42 TraesCS3D01G257000 chr5D 100.000 66 0 0 3960 4025 179714372 179714437 9.760000e-24 122.0
43 TraesCS3D01G257000 chr5D 92.593 54 1 2 4448 4500 179714372 179714423 2.770000e-09 75.0
44 TraesCS3D01G257000 chr5A 94.048 168 8 1 580 745 382565020 382564853 3.320000e-63 254.0
45 TraesCS3D01G257000 chr5A 86.818 220 18 5 101 309 394259984 394260203 1.200000e-57 235.0
46 TraesCS3D01G257000 chr5A 86.512 215 18 7 106 309 597286606 597286392 7.230000e-55 226.0
47 TraesCS3D01G257000 chr5A 87.903 124 14 1 446 569 203679044 203679166 2.080000e-30 145.0
48 TraesCS3D01G257000 chr6A 91.667 180 12 2 577 754 596588453 596588275 5.550000e-61 246.0
49 TraesCS3D01G257000 chr6A 92.562 121 7 2 450 570 115220869 115220751 9.560000e-39 172.0
50 TraesCS3D01G257000 chr1A 86.486 222 19 7 99 309 557124590 557124369 4.320000e-57 233.0
51 TraesCS3D01G257000 chr1A 86.854 213 17 8 106 307 247782486 247782698 2.010000e-55 228.0
52 TraesCS3D01G257000 chr1A 86.512 215 18 7 106 309 65654630 65654416 7.230000e-55 226.0
53 TraesCS3D01G257000 chr2A 86.977 215 17 7 106 309 61973567 61973353 1.550000e-56 231.0
54 TraesCS3D01G257000 chr7A 86.697 218 16 8 104 309 26574600 26574384 5.590000e-56 230.0
55 TraesCS3D01G257000 chr7A 88.125 160 17 2 307 464 700395193 700395352 9.490000e-44 189.0
56 TraesCS3D01G257000 chr7A 87.402 127 15 1 444 570 57865718 57865843 2.080000e-30 145.0
57 TraesCS3D01G257000 chr7A 93.671 79 5 0 3947 4025 359644534 359644612 1.260000e-22 119.0
58 TraesCS3D01G257000 chr7B 91.156 147 12 1 301 446 528329951 528330097 1.580000e-46 198.0
59 TraesCS3D01G257000 chr7B 86.429 140 16 3 450 589 78649702 78649566 4.480000e-32 150.0
60 TraesCS3D01G257000 chr7B 95.402 87 2 1 3941 4025 234405322 234405408 3.490000e-28 137.0
61 TraesCS3D01G257000 chr7B 91.935 62 2 2 4440 4500 234405335 234405394 4.610000e-12 84.2
62 TraesCS3D01G257000 chrUn 88.750 160 16 2 307 464 83456589 83456430 2.040000e-45 195.0
63 TraesCS3D01G257000 chr6B 88.608 158 16 2 308 464 130940064 130939908 2.640000e-44 191.0
64 TraesCS3D01G257000 chr7D 87.421 159 18 2 308 464 624902570 624902412 1.590000e-41 182.0
65 TraesCS3D01G257000 chr7D 93.220 118 7 1 454 571 614432385 614432501 9.560000e-39 172.0
66 TraesCS3D01G257000 chr7D 87.611 113 11 3 444 555 581088133 581088243 2.100000e-25 128.0
67 TraesCS3D01G257000 chr7D 83.333 126 20 1 444 569 632854498 632854622 1.630000e-21 115.0
68 TraesCS3D01G257000 chr5B 85.882 170 22 2 289 457 268501997 268502165 5.710000e-41 180.0
69 TraesCS3D01G257000 chr5B 92.500 120 8 1 450 569 71993682 71993800 3.440000e-38 171.0
70 TraesCS3D01G257000 chr5B 87.582 153 10 6 450 600 382381466 382381321 1.240000e-37 169.0
71 TraesCS3D01G257000 chr4B 91.406 128 9 2 450 577 107680964 107681089 2.660000e-39 174.0
72 TraesCS3D01G257000 chr4B 96.203 79 3 0 3947 4025 76703938 76703860 5.830000e-26 130.0
73 TraesCS3D01G257000 chr4B 100.000 66 0 0 3960 4025 516744158 516744223 9.760000e-24 122.0
74 TraesCS3D01G257000 chr4B 92.593 54 1 2 4448 4500 516744158 516744209 2.770000e-09 75.0
75 TraesCS3D01G257000 chr6D 92.500 120 7 2 450 569 27424580 27424697 3.440000e-38 171.0
76 TraesCS3D01G257000 chr6D 90.698 129 8 3 450 576 413973131 413973005 1.240000e-37 169.0
77 TraesCS3D01G257000 chr6D 97.468 79 2 0 3947 4025 168680761 168680683 1.250000e-27 135.0
78 TraesCS3D01G257000 chr6D 84.496 129 15 3 444 569 310520565 310520691 9.760000e-24 122.0
79 TraesCS3D01G257000 chr6D 84.677 124 16 3 444 566 264440505 264440626 3.510000e-23 121.0
80 TraesCS3D01G257000 chr6D 90.323 62 3 3 4440 4500 168680756 168680697 2.140000e-10 78.7
81 TraesCS3D01G257000 chr2D 85.443 158 16 5 450 606 390969930 390969779 2.680000e-34 158.0
82 TraesCS3D01G257000 chr4D 93.878 98 4 2 3961 4056 483304228 483304325 5.790000e-31 147.0
83 TraesCS3D01G257000 chr4A 96.471 85 2 1 3972 4056 74937077 74936994 9.690000e-29 139.0
84 TraesCS3D01G257000 chr1B 98.485 66 1 0 3960 4025 315098791 315098856 4.540000e-22 117.0
85 TraesCS3D01G257000 chr1B 92.593 54 1 2 4448 4500 315098791 315098842 2.770000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G257000 chr3D 359318013 359325179 7166 True 13236.000000 13236 100.000000 1 7167 1 chr3D.!!$R4 7166
1 TraesCS3D01G257000 chr3B 465338287 465344776 6489 True 1453.771429 5535 92.006714 580 7167 7 chr3B.!!$R6 6587
2 TraesCS3D01G257000 chr3B 465374501 465376149 1648 True 899.000000 1192 92.423000 1 1590 2 chr3B.!!$R7 1589
3 TraesCS3D01G257000 chr3B 465276090 465277583 1493 True 375.000000 699 85.558250 3589 6395 4 chr3B.!!$R4 2806
4 TraesCS3D01G257000 chr3B 465329378 465331293 1915 True 325.550000 704 86.435250 3877 6547 4 chr3B.!!$R5 2670
5 TraesCS3D01G257000 chr3A 478687604 478693363 5759 True 2236.125000 4180 93.616500 787 6414 4 chr3A.!!$R2 5627
6 TraesCS3D01G257000 chr3A 478675789 478682552 6763 True 396.600000 885 88.941000 3877 7167 6 chr3A.!!$R1 3290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 121 1.765904 TGAATGAGGCTGCCCGTAATA 59.234 47.619 16.57 0.00 35.76 0.98 F
1128 1390 1.038130 CCGATCTCCTCCTTGACCGT 61.038 60.000 0.00 0.00 0.00 4.83 F
2163 2692 0.400213 TCGCCCATCTTTTCCTGTGT 59.600 50.000 0.00 0.00 0.00 3.72 F
2967 3496 2.027385 GGCAAGGATCCTGGAAATGAC 58.973 52.381 21.32 10.57 0.00 3.06 F
4935 5484 0.247460 CGAGAGAGTGGCCATGACAA 59.753 55.000 9.72 0.00 0.00 3.18 F
4938 5487 0.615331 GAGAGTGGCCATGACAAGGA 59.385 55.000 9.72 0.00 0.00 3.36 F
4941 5490 0.773644 AGTGGCCATGACAAGGAAGT 59.226 50.000 9.72 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1679 1.494960 AGACCCCTCTCAGAATGCTC 58.505 55.000 0.00 0.00 34.76 4.26 R
2967 3496 1.068402 TGGACATTGTCATGCAAAGCG 60.068 47.619 18.09 2.68 40.91 4.68 R
3386 3915 1.821136 CTTGGGTTTCCTGAAGCATCC 59.179 52.381 0.00 0.00 37.48 3.51 R
4943 5492 0.037734 CCCCGTCCCTTGCTTTTAGT 59.962 55.000 0.00 0.00 0.00 2.24 R
6024 6618 1.028905 CGTGTTTTGGGAGGCTTCAA 58.971 50.000 0.00 0.00 0.00 2.69 R
6105 6699 2.111384 GCTCATCTGGGACCTGAGTTA 58.889 52.381 9.53 0.00 38.88 2.24 R
6446 7059 2.248248 CAAGATATACTCCCTCGGGCA 58.752 52.381 0.00 0.00 34.68 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 3.885297 CCGAGATCCAAAATGCCATACTT 59.115 43.478 0.00 0.00 0.00 2.24
108 110 4.660789 AATGCCATACTTTGAATGAGGC 57.339 40.909 0.00 0.00 40.93 4.70
111 113 2.223665 GCCATACTTTGAATGAGGCTGC 60.224 50.000 0.00 0.00 37.67 5.25
119 121 1.765904 TGAATGAGGCTGCCCGTAATA 59.234 47.619 16.57 0.00 35.76 0.98
131 133 5.450688 GCTGCCCGTAATAGGAGTATCATAG 60.451 48.000 0.00 0.00 33.52 2.23
313 323 5.531122 TGCACTATGAATGTAGTACTCCC 57.469 43.478 0.00 0.00 33.29 4.30
375 386 9.634163 CAGGTACCAAAGTAAAATTTAATGACC 57.366 33.333 15.94 0.00 0.00 4.02
377 388 9.414295 GGTACCAAAGTAAAATTTAATGACCAC 57.586 33.333 7.15 0.00 0.00 4.16
395 406 3.196685 ACCACTTTGCAAGCCAACTTTTA 59.803 39.130 0.00 0.00 32.29 1.52
398 409 5.296531 CCACTTTGCAAGCCAACTTTTATTT 59.703 36.000 0.00 0.00 32.29 1.40
462 518 6.881602 AGAAGGAATAGGAAACAAGTTGCTAG 59.118 38.462 1.81 0.00 42.69 3.42
465 521 7.862675 AGGAATAGGAAACAAGTTGCTAGTAT 58.137 34.615 1.81 0.00 42.69 2.12
504 560 4.742438 TTTTGTCTCGATTACTGTTGGC 57.258 40.909 0.00 0.00 0.00 4.52
505 561 3.678056 TTGTCTCGATTACTGTTGGCT 57.322 42.857 0.00 0.00 0.00 4.75
524 580 3.004106 GGCTGCCTTGTATAGATGCAAAG 59.996 47.826 12.43 0.00 32.12 2.77
532 588 8.190784 GCCTTGTATAGATGCAAAGTGTATTTT 58.809 33.333 0.00 0.00 32.12 1.82
571 627 7.313731 TGTATAAGGGAATGAAGGGAGTATCT 58.686 38.462 0.00 0.00 33.73 1.98
577 633 6.621514 AGGGAATGAAGGGAGTATCTTACATT 59.378 38.462 0.00 0.00 33.73 2.71
601 657 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
602 658 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
609 665 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
637 693 8.820933 AGACATTTCAAATGACTATCACATACG 58.179 33.333 17.30 0.00 0.00 3.06
695 751 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
697 753 9.128404 ACTCATTTTACTCCGTATGTAGTCATA 57.872 33.333 0.00 0.00 35.70 2.15
708 764 9.139734 TCCGTATGTAGTCATATTTTAGAACCT 57.860 33.333 0.00 0.00 38.56 3.50
734 791 8.535690 AGAAAGACAAGTATTTAGAAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
736 793 5.731591 AGACAAGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
755 812 7.894364 ACGGAGGGAGTACATTAGTATCATATT 59.106 37.037 0.00 0.00 31.84 1.28
756 813 8.750298 CGGAGGGAGTACATTAGTATCATATTT 58.250 37.037 0.00 0.00 31.84 1.40
815 872 8.293114 ACAAATCAATTCCGTGTTTGTTATTC 57.707 30.769 0.00 0.00 39.25 1.75
1128 1390 1.038130 CCGATCTCCTCCTTGACCGT 61.038 60.000 0.00 0.00 0.00 4.83
1345 1607 6.015772 TGCTTATTGTATATGACGCCACTCTA 60.016 38.462 0.00 0.00 0.00 2.43
1372 1638 4.675114 CGTCAACAGCTGTTTTTACCATTC 59.325 41.667 29.23 10.43 35.83 2.67
1389 1655 4.578928 ACCATTCTTATGTAATTGGACGCC 59.421 41.667 0.00 0.00 0.00 5.68
1503 1769 7.366847 TGTTTTCTTTTCAAATGTCCCCATA 57.633 32.000 0.00 0.00 0.00 2.74
1590 1856 7.169645 CAGTTGGAGTAAATGTTGAATTTGGTG 59.830 37.037 0.00 0.00 30.10 4.17
1707 2235 6.153340 ACAAAGTTAATATTGCATCTGCTGGT 59.847 34.615 3.53 0.00 42.66 4.00
2070 2599 1.616327 ACAGATACTGGGCAGGCCA 60.616 57.895 16.38 16.38 35.51 5.36
2133 2662 5.528690 GGTTCTGATGATCCGAATGATTCAA 59.471 40.000 5.95 0.00 32.41 2.69
2163 2692 0.400213 TCGCCCATCTTTTCCTGTGT 59.600 50.000 0.00 0.00 0.00 3.72
2194 2723 2.813754 TGTTGAATAAGCTGGTGAGTGC 59.186 45.455 0.00 0.00 0.00 4.40
2550 3079 7.255451 CCAGTTGTGTTTAAGTCATATGGTTGT 60.255 37.037 2.13 0.00 0.00 3.32
2923 3452 3.573538 CGAGTCTGGAGATGAGGATGAAT 59.426 47.826 0.00 0.00 0.00 2.57
2967 3496 2.027385 GGCAAGGATCCTGGAAATGAC 58.973 52.381 21.32 10.57 0.00 3.06
3270 3799 4.677182 AGGGCACAATGGAGAAAATAGTT 58.323 39.130 0.00 0.00 0.00 2.24
3386 3915 7.857734 ATCCATATCACTCGTACTATCTCAG 57.142 40.000 0.00 0.00 0.00 3.35
3482 4011 4.610333 ACTTTCCCTTTCTTGACCTGTTT 58.390 39.130 0.00 0.00 0.00 2.83
3483 4012 4.402474 ACTTTCCCTTTCTTGACCTGTTTG 59.598 41.667 0.00 0.00 0.00 2.93
3532 4062 8.506168 TTGTCAGATAGTTTAATTGGGCTAAG 57.494 34.615 0.00 0.00 0.00 2.18
3682 4212 0.887933 GAACCAATGGGCATGTTCGT 59.112 50.000 3.55 0.00 37.90 3.85
3723 4253 5.984926 CCGCCAATGCTGTAATGAAATAAAT 59.015 36.000 0.00 0.00 34.43 1.40
3724 4254 7.144661 CCGCCAATGCTGTAATGAAATAAATA 58.855 34.615 0.00 0.00 34.43 1.40
3725 4255 7.114811 CCGCCAATGCTGTAATGAAATAAATAC 59.885 37.037 0.00 0.00 34.43 1.89
3726 4256 7.862372 CGCCAATGCTGTAATGAAATAAATACT 59.138 33.333 0.00 0.00 34.43 2.12
3727 4257 8.971321 GCCAATGCTGTAATGAAATAAATACTG 58.029 33.333 0.00 0.00 33.53 2.74
3859 4392 5.935206 TGACACACTGACACTTAAAGTTTCA 59.065 36.000 0.00 0.00 32.99 2.69
3935 4468 4.527816 ACCTTTCATGCTAAAATTGCCTGA 59.472 37.500 0.00 0.00 34.29 3.86
4036 4569 9.923143 ATATCAATCCTGATGCACAATTTATTG 57.077 29.630 0.00 1.03 42.48 1.90
4157 4691 8.729805 TTAAAAATTCTGGTGCACTTCATTTT 57.270 26.923 17.98 17.19 0.00 1.82
4158 4692 7.628769 AAAAATTCTGGTGCACTTCATTTTT 57.371 28.000 22.50 22.50 30.94 1.94
4181 4715 8.810652 TTTTTATTGACTATTTGGTGCACTTC 57.189 30.769 17.98 0.83 0.00 3.01
4182 4716 7.517614 TTTATTGACTATTTGGTGCACTTCA 57.482 32.000 17.98 3.98 0.00 3.02
4183 4717 7.701539 TTATTGACTATTTGGTGCACTTCAT 57.298 32.000 17.98 8.47 0.00 2.57
4184 4718 6.594788 ATTGACTATTTGGTGCACTTCATT 57.405 33.333 17.98 1.07 0.00 2.57
4185 4719 6.403866 TTGACTATTTGGTGCACTTCATTT 57.596 33.333 17.98 0.70 0.00 2.32
4186 4720 6.403866 TGACTATTTGGTGCACTTCATTTT 57.596 33.333 17.98 0.00 0.00 1.82
4187 4721 6.446318 TGACTATTTGGTGCACTTCATTTTC 58.554 36.000 17.98 7.11 0.00 2.29
4188 4722 5.783111 ACTATTTGGTGCACTTCATTTTCC 58.217 37.500 17.98 0.00 0.00 3.13
4189 4723 4.961438 ATTTGGTGCACTTCATTTTCCT 57.039 36.364 17.98 0.00 0.00 3.36
4190 4724 4.751767 TTTGGTGCACTTCATTTTCCTT 57.248 36.364 17.98 0.00 0.00 3.36
4191 4725 3.731652 TGGTGCACTTCATTTTCCTTG 57.268 42.857 17.98 0.00 0.00 3.61
4192 4726 2.224018 TGGTGCACTTCATTTTCCTTGC 60.224 45.455 17.98 0.00 0.00 4.01
4193 4727 2.224018 GGTGCACTTCATTTTCCTTGCA 60.224 45.455 17.98 0.00 37.63 4.08
4194 4728 3.096489 TGCACTTCATTTTCCTTGCAC 57.904 42.857 0.00 0.00 35.13 4.57
4195 4729 2.429971 TGCACTTCATTTTCCTTGCACA 59.570 40.909 0.00 0.00 35.13 4.57
4196 4730 3.069872 TGCACTTCATTTTCCTTGCACAT 59.930 39.130 0.00 0.00 35.13 3.21
4197 4731 3.430895 GCACTTCATTTTCCTTGCACATG 59.569 43.478 0.00 0.00 0.00 3.21
4198 4732 4.624015 CACTTCATTTTCCTTGCACATGT 58.376 39.130 0.00 0.00 0.00 3.21
4199 4733 4.446385 CACTTCATTTTCCTTGCACATGTG 59.554 41.667 21.83 21.83 0.00 3.21
4200 4734 4.099881 ACTTCATTTTCCTTGCACATGTGT 59.900 37.500 26.01 0.69 0.00 3.72
4201 4735 4.669206 TCATTTTCCTTGCACATGTGTT 57.331 36.364 26.01 0.00 0.00 3.32
4202 4736 5.021033 TCATTTTCCTTGCACATGTGTTT 57.979 34.783 26.01 0.00 0.00 2.83
4203 4737 6.154203 TCATTTTCCTTGCACATGTGTTTA 57.846 33.333 26.01 11.08 0.00 2.01
4204 4738 5.982516 TCATTTTCCTTGCACATGTGTTTAC 59.017 36.000 26.01 10.66 0.00 2.01
4205 4739 4.991153 TTTCCTTGCACATGTGTTTACA 57.009 36.364 26.01 13.16 41.89 2.41
4206 4740 4.991153 TTCCTTGCACATGTGTTTACAA 57.009 36.364 26.01 19.07 40.84 2.41
4207 4741 4.991153 TCCTTGCACATGTGTTTACAAA 57.009 36.364 26.01 10.74 40.84 2.83
4208 4742 5.330455 TCCTTGCACATGTGTTTACAAAA 57.670 34.783 26.01 10.14 40.84 2.44
4209 4743 5.724328 TCCTTGCACATGTGTTTACAAAAA 58.276 33.333 26.01 9.84 40.84 1.94
4210 4744 5.578727 TCCTTGCACATGTGTTTACAAAAAC 59.421 36.000 26.01 6.75 44.40 2.43
4224 4758 7.890763 GTTTACAAAAACACATGTGTAAGGTG 58.109 34.615 30.75 24.94 44.13 4.00
4225 4759 4.429108 ACAAAAACACATGTGTAAGGTGC 58.571 39.130 30.75 0.00 44.13 5.01
4226 4760 4.081972 ACAAAAACACATGTGTAAGGTGCA 60.082 37.500 30.75 0.00 44.13 4.57
4227 4761 3.708563 AAACACATGTGTAAGGTGCAC 57.291 42.857 30.75 8.80 44.13 4.57
4228 4762 2.638480 ACACATGTGTAAGGTGCACT 57.362 45.000 29.66 0.68 42.90 4.40
4229 4763 2.930950 ACACATGTGTAAGGTGCACTT 58.069 42.857 29.66 6.12 42.90 3.16
4230 4764 4.079980 ACACATGTGTAAGGTGCACTTA 57.920 40.909 29.66 10.38 42.90 2.24
4240 4774 4.792521 AAGGTGCACTTACAAAAACACA 57.207 36.364 17.98 0.00 37.74 3.72
4241 4775 5.337578 AAGGTGCACTTACAAAAACACAT 57.662 34.783 17.98 0.00 37.74 3.21
4242 4776 4.681744 AGGTGCACTTACAAAAACACATG 58.318 39.130 17.98 0.00 0.00 3.21
4243 4777 4.159506 AGGTGCACTTACAAAAACACATGT 59.840 37.500 17.98 0.00 0.00 3.21
4244 4778 4.267452 GGTGCACTTACAAAAACACATGTG 59.733 41.667 24.25 24.25 0.00 3.21
4245 4779 9.612692 AAGGTGCACTTACAAAAACACATGTGT 62.613 37.037 25.76 25.76 41.04 3.72
4246 4780 6.030849 GTGCACTTACAAAAACACATGTGTA 58.969 36.000 30.75 12.27 44.13 2.90
4247 4781 6.528423 GTGCACTTACAAAAACACATGTGTAA 59.472 34.615 30.75 18.68 44.13 2.41
4251 4785 7.678194 CTTACAAAAACACATGTGTAAGGTG 57.322 36.000 30.75 24.94 44.93 4.00
4252 4786 4.429108 ACAAAAACACATGTGTAAGGTGC 58.571 39.130 30.75 0.00 44.13 5.01
4253 4787 4.081972 ACAAAAACACATGTGTAAGGTGCA 60.082 37.500 30.75 0.00 44.13 4.57
4254 4788 3.708563 AAACACATGTGTAAGGTGCAC 57.291 42.857 30.75 8.80 44.13 4.57
4255 4789 2.638480 ACACATGTGTAAGGTGCACT 57.362 45.000 29.66 0.68 42.90 4.40
4256 4790 2.930950 ACACATGTGTAAGGTGCACTT 58.069 42.857 29.66 6.12 42.90 3.16
4257 4791 2.878406 ACACATGTGTAAGGTGCACTTC 59.122 45.455 29.66 0.06 42.90 3.01
4258 4792 2.877786 CACATGTGTAAGGTGCACTTCA 59.122 45.455 18.03 3.48 40.64 3.02
4259 4793 3.503363 CACATGTGTAAGGTGCACTTCAT 59.497 43.478 18.03 5.92 40.64 2.57
4260 4794 4.022935 CACATGTGTAAGGTGCACTTCATT 60.023 41.667 18.03 9.29 40.64 2.57
4261 4795 4.584325 ACATGTGTAAGGTGCACTTCATTT 59.416 37.500 17.98 6.57 40.64 2.32
4262 4796 5.068987 ACATGTGTAAGGTGCACTTCATTTT 59.931 36.000 17.98 4.89 40.64 1.82
4275 4809 6.488344 TGCACTTCATTTTCCTTACACATGTA 59.512 34.615 0.00 0.00 0.00 2.29
4303 4838 6.864360 TGTAAACTATAAGTTGCGTTGGTT 57.136 33.333 0.00 0.00 38.66 3.67
4400 4938 8.674263 ATTCATCTTATATGCTTATAGCCTGC 57.326 34.615 0.00 0.00 41.51 4.85
4428 4967 3.062042 CAAGATTGCTTGTTTCCTTGGC 58.938 45.455 0.00 0.00 45.10 4.52
4500 5040 5.921408 CAGTAAGTTCTTCTGTGGACACTAC 59.079 44.000 3.91 0.00 0.00 2.73
4572 5112 8.928844 CAAGTACTGAAGTATTTGGTTTAACG 57.071 34.615 14.63 0.00 41.55 3.18
4792 5341 1.517242 GTGGTTCTTCAGAGCACAGG 58.483 55.000 1.98 0.00 43.15 4.00
4894 5443 1.137872 AGAAGGTCTATGGAGCGCAAG 59.862 52.381 11.47 0.00 43.89 4.01
4921 5470 2.442413 AGTTCTTCAGACCTCCGAGAG 58.558 52.381 0.00 0.00 0.00 3.20
4933 5482 1.142748 CCGAGAGAGTGGCCATGAC 59.857 63.158 9.72 3.39 0.00 3.06
4934 5483 1.607801 CCGAGAGAGTGGCCATGACA 61.608 60.000 9.72 0.00 0.00 3.58
4935 5484 0.247460 CGAGAGAGTGGCCATGACAA 59.753 55.000 9.72 0.00 0.00 3.18
4936 5485 1.738365 CGAGAGAGTGGCCATGACAAG 60.738 57.143 9.72 0.00 0.00 3.16
4937 5486 0.617413 AGAGAGTGGCCATGACAAGG 59.383 55.000 9.72 0.00 0.00 3.61
4938 5487 0.615331 GAGAGTGGCCATGACAAGGA 59.385 55.000 9.72 0.00 0.00 3.36
4939 5488 1.003580 GAGAGTGGCCATGACAAGGAA 59.996 52.381 9.72 0.00 0.00 3.36
4940 5489 1.004044 AGAGTGGCCATGACAAGGAAG 59.996 52.381 9.72 0.00 0.00 3.46
4941 5490 0.773644 AGTGGCCATGACAAGGAAGT 59.226 50.000 9.72 0.00 0.00 3.01
4942 5491 1.985159 AGTGGCCATGACAAGGAAGTA 59.015 47.619 9.72 0.00 0.00 2.24
4943 5492 2.375174 AGTGGCCATGACAAGGAAGTAA 59.625 45.455 9.72 0.00 0.00 2.24
4944 5493 2.488153 GTGGCCATGACAAGGAAGTAAC 59.512 50.000 9.72 0.00 0.00 2.50
4945 5494 2.375174 TGGCCATGACAAGGAAGTAACT 59.625 45.455 0.00 0.00 0.00 2.24
4946 5495 3.585289 TGGCCATGACAAGGAAGTAACTA 59.415 43.478 0.00 0.00 0.00 2.24
4947 5496 4.042311 TGGCCATGACAAGGAAGTAACTAA 59.958 41.667 0.00 0.00 0.00 2.24
4948 5497 5.007682 GGCCATGACAAGGAAGTAACTAAA 58.992 41.667 0.00 0.00 0.00 1.85
4949 5498 5.475564 GGCCATGACAAGGAAGTAACTAAAA 59.524 40.000 0.00 0.00 0.00 1.52
4950 5499 6.349363 GGCCATGACAAGGAAGTAACTAAAAG 60.349 42.308 0.00 0.00 0.00 2.27
5026 5593 2.355108 GGAACCATCACAGAAGCAGCTA 60.355 50.000 0.00 0.00 0.00 3.32
5050 5617 0.938192 ACAAACAAGGGGAGGGGAAA 59.062 50.000 0.00 0.00 0.00 3.13
5060 5627 1.077169 GGGAGGGGAAATTCCAGTTGT 59.923 52.381 14.68 0.00 38.64 3.32
5430 5997 3.793144 GAGGCTTCGGCGTGCAAG 61.793 66.667 23.08 14.31 42.91 4.01
5636 6230 3.924610 GAACGTGAAGGTTCGAATATGC 58.075 45.455 0.00 0.00 37.20 3.14
5707 6301 5.113446 ACAGAAAGCATCATCCAGAATCT 57.887 39.130 0.00 0.00 0.00 2.40
5805 6399 2.079158 CCACAGTAAGGATGCACACAG 58.921 52.381 0.00 0.00 0.00 3.66
5808 6402 2.368548 ACAGTAAGGATGCACACAGACA 59.631 45.455 0.00 0.00 0.00 3.41
5848 6442 3.433740 CCAAGGAAAGGGAGTATAGGCAC 60.434 52.174 0.00 0.00 0.00 5.01
5920 6514 3.449018 GGCATAGGGACGATCATCACTAT 59.551 47.826 7.75 7.75 44.61 2.12
5996 6590 2.305927 AGGAAACACAAGGATGACGGAT 59.694 45.455 0.00 0.00 0.00 4.18
6024 6618 1.152963 AGCAAACTCTTGGCCGTGT 60.153 52.632 0.00 0.00 32.76 4.49
6105 6699 1.448540 CTCAATCTTCGCAGGCGGT 60.449 57.895 14.24 0.00 40.25 5.68
6178 6772 1.336517 ACACTGTAATACACTGCGCGT 60.337 47.619 8.43 0.01 0.00 6.01
6321 6929 4.058124 TCTGCATTTATAGCGCCTACTTG 58.942 43.478 2.29 0.00 33.85 3.16
6323 6931 2.808543 GCATTTATAGCGCCTACTTGCT 59.191 45.455 2.29 0.00 45.04 3.91
6418 7028 5.892348 ACTTCCTCAGTCCCAAAATGTAAT 58.108 37.500 0.00 0.00 0.00 1.89
6419 7029 5.711976 ACTTCCTCAGTCCCAAAATGTAATG 59.288 40.000 0.00 0.00 0.00 1.90
6422 7035 6.177610 TCCTCAGTCCCAAAATGTAATGTAC 58.822 40.000 0.00 0.00 0.00 2.90
6506 7679 0.109272 TGACTCTTTAGCTGCCGACG 60.109 55.000 0.00 0.00 0.00 5.12
6535 7708 3.044986 CTGAAGAAAATGTTGCACCGTG 58.955 45.455 0.00 0.00 0.00 4.94
6552 7725 6.427242 TGCACCGTGAACATATTGTTTAGTAA 59.573 34.615 1.65 0.00 41.28 2.24
6553 7726 7.041303 TGCACCGTGAACATATTGTTTAGTAAA 60.041 33.333 1.65 0.00 41.28 2.01
6594 7767 4.138487 CCTACCAAGGGAGTGTATGTTC 57.862 50.000 0.00 0.00 39.48 3.18
6595 7768 3.775316 CCTACCAAGGGAGTGTATGTTCT 59.225 47.826 0.00 0.00 39.48 3.01
6596 7769 4.960469 CCTACCAAGGGAGTGTATGTTCTA 59.040 45.833 0.00 0.00 39.48 2.10
6597 7770 5.602978 CCTACCAAGGGAGTGTATGTTCTAT 59.397 44.000 0.00 0.00 39.48 1.98
6600 7773 5.726793 ACCAAGGGAGTGTATGTTCTATCTT 59.273 40.000 0.00 0.00 0.00 2.40
6603 7776 6.875972 AGGGAGTGTATGTTCTATCTTGTT 57.124 37.500 0.00 0.00 0.00 2.83
6604 7777 6.644347 AGGGAGTGTATGTTCTATCTTGTTG 58.356 40.000 0.00 0.00 0.00 3.33
6605 7778 6.440647 AGGGAGTGTATGTTCTATCTTGTTGA 59.559 38.462 0.00 0.00 0.00 3.18
6606 7779 7.126421 AGGGAGTGTATGTTCTATCTTGTTGAT 59.874 37.037 0.00 0.00 39.11 2.57
6607 7780 7.439655 GGGAGTGTATGTTCTATCTTGTTGATC 59.560 40.741 0.00 0.00 36.65 2.92
6608 7781 8.200792 GGAGTGTATGTTCTATCTTGTTGATCT 58.799 37.037 0.00 0.00 36.65 2.75
6623 7796 8.830580 TCTTGTTGATCTAAAGAAACAACAGAG 58.169 33.333 22.52 21.28 45.65 3.35
6630 7803 7.624360 TCTAAAGAAACAACAGAGAGCAAAA 57.376 32.000 0.00 0.00 0.00 2.44
6638 7811 5.523369 ACAACAGAGAGCAAAATTTACTGC 58.477 37.500 6.73 6.73 38.91 4.40
6639 7812 4.773323 ACAGAGAGCAAAATTTACTGCC 57.227 40.909 10.53 3.99 39.47 4.85
6640 7813 3.189287 ACAGAGAGCAAAATTTACTGCCG 59.811 43.478 10.53 0.00 39.47 5.69
6641 7814 3.189287 CAGAGAGCAAAATTTACTGCCGT 59.811 43.478 10.53 0.00 39.47 5.68
6642 7815 3.821033 AGAGAGCAAAATTTACTGCCGTT 59.179 39.130 10.53 0.00 39.47 4.44
6643 7816 5.001232 AGAGAGCAAAATTTACTGCCGTTA 58.999 37.500 10.53 0.00 39.47 3.18
6644 7817 5.648092 AGAGAGCAAAATTTACTGCCGTTAT 59.352 36.000 10.53 0.00 39.47 1.89
6645 7818 6.821665 AGAGAGCAAAATTTACTGCCGTTATA 59.178 34.615 10.53 0.00 39.47 0.98
6646 7819 7.335924 AGAGAGCAAAATTTACTGCCGTTATAA 59.664 33.333 10.53 0.00 39.47 0.98
6647 7820 7.248437 AGAGCAAAATTTACTGCCGTTATAAC 58.752 34.615 10.53 5.47 39.47 1.89
6648 7821 6.915349 AGCAAAATTTACTGCCGTTATAACA 58.085 32.000 15.67 0.00 39.47 2.41
6649 7822 7.543756 AGCAAAATTTACTGCCGTTATAACAT 58.456 30.769 15.67 0.00 39.47 2.71
6651 7824 8.953990 GCAAAATTTACTGCCGTTATAACATAG 58.046 33.333 15.67 11.54 32.18 2.23
6657 7830 9.820725 TTTACTGCCGTTATAACATAGTATTGT 57.179 29.630 15.67 5.66 0.00 2.71
6658 7831 9.820725 TTACTGCCGTTATAACATAGTATTGTT 57.179 29.630 15.67 0.00 42.31 2.83
6662 7835 9.820725 TGCCGTTATAACATAGTATTGTTTAGT 57.179 29.630 15.67 0.00 40.25 2.24
6710 9566 5.618056 TGTTACGATCTCAAACGTAGTCT 57.382 39.130 0.00 0.00 45.00 3.24
6711 9567 5.388111 TGTTACGATCTCAAACGTAGTCTG 58.612 41.667 0.00 0.00 45.00 3.51
6713 9569 2.488545 ACGATCTCAAACGTAGTCTGCT 59.511 45.455 0.00 0.00 45.00 4.24
6715 9571 3.544285 CGATCTCAAACGTAGTCTGCTTC 59.456 47.826 0.00 0.00 45.00 3.86
6716 9572 4.673061 CGATCTCAAACGTAGTCTGCTTCT 60.673 45.833 0.00 0.00 45.00 2.85
6717 9573 3.902150 TCTCAAACGTAGTCTGCTTCTG 58.098 45.455 0.00 0.00 45.00 3.02
6718 9574 2.404215 TCAAACGTAGTCTGCTTCTGC 58.596 47.619 0.00 0.00 45.00 4.26
6719 9575 2.035961 TCAAACGTAGTCTGCTTCTGCT 59.964 45.455 0.00 0.00 45.00 4.24
6720 9576 2.802816 CAAACGTAGTCTGCTTCTGCTT 59.197 45.455 0.00 0.00 45.00 3.91
6721 9577 3.936372 AACGTAGTCTGCTTCTGCTTA 57.064 42.857 0.00 0.00 45.00 3.09
6723 9579 4.252971 ACGTAGTCTGCTTCTGCTTAAA 57.747 40.909 0.00 0.00 29.74 1.52
6724 9580 4.628074 ACGTAGTCTGCTTCTGCTTAAAA 58.372 39.130 0.00 0.00 29.74 1.52
6725 9581 5.054477 ACGTAGTCTGCTTCTGCTTAAAAA 58.946 37.500 0.00 0.00 29.74 1.94
6756 9612 3.119316 AGTCTGCTTCTATCTGAACACCG 60.119 47.826 0.00 0.00 0.00 4.94
6786 9642 4.032355 CGTGTTTGTTTTGTTCGTATGCT 58.968 39.130 0.00 0.00 0.00 3.79
6787 9643 5.199000 CGTGTTTGTTTTGTTCGTATGCTA 58.801 37.500 0.00 0.00 0.00 3.49
6840 9696 1.468520 CAACCCAGCACTCGGTATTTG 59.531 52.381 0.00 0.00 0.00 2.32
6845 9701 3.005367 CCCAGCACTCGGTATTTGTTTTT 59.995 43.478 0.00 0.00 0.00 1.94
6846 9702 3.980775 CCAGCACTCGGTATTTGTTTTTG 59.019 43.478 0.00 0.00 0.00 2.44
6847 9703 4.499019 CCAGCACTCGGTATTTGTTTTTGT 60.499 41.667 0.00 0.00 0.00 2.83
6848 9704 4.440758 CAGCACTCGGTATTTGTTTTTGTG 59.559 41.667 0.00 0.00 0.00 3.33
6849 9705 3.181575 GCACTCGGTATTTGTTTTTGTGC 59.818 43.478 0.00 0.00 40.72 4.57
6850 9706 3.733727 CACTCGGTATTTGTTTTTGTGCC 59.266 43.478 0.00 0.00 0.00 5.01
6851 9707 2.977169 CTCGGTATTTGTTTTTGTGCCG 59.023 45.455 0.00 0.00 40.50 5.69
6854 9710 3.606346 CGGTATTTGTTTTTGTGCCGATC 59.394 43.478 0.00 0.00 41.45 3.69
6855 9711 3.924073 GGTATTTGTTTTTGTGCCGATCC 59.076 43.478 0.00 0.00 0.00 3.36
6856 9712 4.321675 GGTATTTGTTTTTGTGCCGATCCT 60.322 41.667 0.00 0.00 0.00 3.24
6858 9714 3.907894 TTGTTTTTGTGCCGATCCTAC 57.092 42.857 0.00 0.00 0.00 3.18
6859 9715 2.852449 TGTTTTTGTGCCGATCCTACA 58.148 42.857 0.00 0.00 0.00 2.74
6865 9721 2.972625 TGTGCCGATCCTACAGAAAAG 58.027 47.619 0.00 0.00 0.00 2.27
6875 9734 6.310711 CGATCCTACAGAAAAGTACCTGAAAC 59.689 42.308 4.15 0.00 34.65 2.78
6893 9752 6.468000 CCTGAAACGCTTATTATTTTCCGTTC 59.532 38.462 0.00 0.00 37.85 3.95
6899 9758 6.804783 ACGCTTATTATTTTCCGTTCCAAAAG 59.195 34.615 0.00 0.00 0.00 2.27
6902 9761 9.198837 GCTTATTATTTTCCGTTCCAAAAGAAA 57.801 29.630 0.00 0.00 35.85 2.52
7084 9967 2.196925 CCTCCCCGACGAGATCCTG 61.197 68.421 0.00 0.00 30.97 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 0.326595 TTACGGGCAGCCTCATTCAA 59.673 50.000 12.43 0.00 0.00 2.69
108 110 5.067936 CCTATGATACTCCTATTACGGGCAG 59.932 48.000 0.00 0.00 0.00 4.85
111 113 7.344913 ACTACCTATGATACTCCTATTACGGG 58.655 42.308 0.00 0.00 0.00 5.28
119 121 7.414266 TGCATGATACTACCTATGATACTCCT 58.586 38.462 0.00 0.00 0.00 3.69
131 133 3.480470 AGTTGGCATGCATGATACTACC 58.520 45.455 30.64 19.65 0.00 3.18
286 296 9.011095 GGAGTACTACATTCATAGTGCATAGTA 57.989 37.037 0.00 0.00 39.49 1.82
335 345 3.579586 TGGTACCTGTAATTTGAGTCCGT 59.420 43.478 14.36 0.00 0.00 4.69
337 347 6.002082 ACTTTGGTACCTGTAATTTGAGTCC 58.998 40.000 14.36 0.00 0.00 3.85
338 348 8.611654 TTACTTTGGTACCTGTAATTTGAGTC 57.388 34.615 14.36 0.00 0.00 3.36
398 409 7.255660 GGCATATTAATGATCCCGGTTAACAAA 60.256 37.037 8.10 0.00 34.84 2.83
481 537 5.473504 AGCCAACAGTAATCGAGACAAAAAT 59.526 36.000 3.35 0.00 0.00 1.82
491 547 1.131126 CAAGGCAGCCAACAGTAATCG 59.869 52.381 15.80 0.00 0.00 3.34
504 560 4.637534 ACACTTTGCATCTATACAAGGCAG 59.362 41.667 0.00 0.00 35.68 4.85
505 561 4.588899 ACACTTTGCATCTATACAAGGCA 58.411 39.130 0.00 0.00 0.00 4.75
571 627 5.461327 AGGAACGGAGGGAGTATAATGTAA 58.539 41.667 0.00 0.00 0.00 2.41
577 633 8.591072 CAAATATTTAGGAACGGAGGGAGTATA 58.409 37.037 0.00 0.00 0.00 1.47
614 670 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
681 737 9.408069 GGTTCTAAAATATGACTACATACGGAG 57.592 37.037 0.00 0.00 41.03 4.63
705 761 9.420551 CGTTTCTAAATACTTGTCTTTCTAGGT 57.579 33.333 0.00 0.00 0.00 3.08
708 764 9.635520 CTCCGTTTCTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
709 765 7.603024 CCTCCGTTTCTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
710 766 7.148457 CCCTCCGTTTCTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
711 767 6.653740 CCCTCCGTTTCTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
714 770 5.727434 TCCCTCCGTTTCTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
715 771 5.247792 ACTCCCTCCGTTTCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
716 772 5.731591 ACTCCCTCCGTTTCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
718 774 5.954150 TGTACTCCCTCCGTTTCTAAATACT 59.046 40.000 0.00 0.00 0.00 2.12
719 775 6.212888 TGTACTCCCTCCGTTTCTAAATAC 57.787 41.667 0.00 0.00 0.00 1.89
720 776 7.427989 AATGTACTCCCTCCGTTTCTAAATA 57.572 36.000 0.00 0.00 0.00 1.40
726 783 4.732672 ACTAATGTACTCCCTCCGTTTC 57.267 45.455 0.00 0.00 0.00 2.78
734 791 9.654663 GTGGAAATATGATACTAATGTACTCCC 57.345 37.037 0.00 0.00 0.00 4.30
755 812 0.541063 TCAGGCCAGTCGTAGTGGAA 60.541 55.000 5.01 0.00 41.28 3.53
756 813 0.541063 TTCAGGCCAGTCGTAGTGGA 60.541 55.000 5.01 0.00 41.28 4.02
762 819 0.759346 AAAGAGTTCAGGCCAGTCGT 59.241 50.000 5.01 0.00 0.00 4.34
768 825 4.473477 TTAGCTAGAAAGAGTTCAGGCC 57.527 45.455 0.00 0.00 36.09 5.19
1345 1607 4.261031 GGTAAAAACAGCTGTTGACGACAT 60.261 41.667 31.73 12.28 38.44 3.06
1372 1638 4.318546 GCTAACGGCGTCCAATTACATAAG 60.319 45.833 15.17 0.00 0.00 1.73
1389 1655 2.248487 GTCCACAGACTTACGCTAACG 58.752 52.381 0.00 0.00 41.92 3.18
1413 1679 1.494960 AGACCCCTCTCAGAATGCTC 58.505 55.000 0.00 0.00 34.76 4.26
1590 1856 3.906998 ACATATCTCAGTGTCATAGCGC 58.093 45.455 0.00 0.00 0.00 5.92
1707 2235 7.718753 GGTAGACAGTACAGCTACTATAGGAAA 59.281 40.741 4.43 0.00 35.87 3.13
1851 2379 4.389374 TCCTTCCTGCAAACTTACAGAAG 58.611 43.478 0.00 0.00 35.90 2.85
1854 2382 3.119708 GCATCCTTCCTGCAAACTTACAG 60.120 47.826 0.00 0.00 39.46 2.74
2133 2662 5.559148 AAAGATGGGCGATAAGAAGAGAT 57.441 39.130 0.00 0.00 0.00 2.75
2163 2692 4.456911 CAGCTTATTCAACAGGCTTTCTGA 59.543 41.667 0.00 0.00 46.18 3.27
2194 2723 2.072298 GAGCAGACAGTAGGCTTTGTG 58.928 52.381 8.80 0.00 38.15 3.33
2550 3079 7.496920 CAGTAATGGTATGAGAGCAGAAAATCA 59.503 37.037 0.00 0.00 39.39 2.57
2967 3496 1.068402 TGGACATTGTCATGCAAAGCG 60.068 47.619 18.09 2.68 40.91 4.68
3033 3562 5.285651 GCTGCTTCTATAGTTACTGTCTGG 58.714 45.833 0.00 0.00 0.00 3.86
3045 3574 7.125204 TCCTTTACTAAAGTGGCTGCTTCTATA 59.875 37.037 0.00 0.00 36.77 1.31
3270 3799 3.835978 TCCCGTTCCTGAGAATAAACTCA 59.164 43.478 0.00 0.00 43.39 3.41
3386 3915 1.821136 CTTGGGTTTCCTGAAGCATCC 59.179 52.381 0.00 0.00 37.48 3.51
3472 4001 8.463930 AAATTGACTTCTATCAAACAGGTCAA 57.536 30.769 0.00 0.00 41.78 3.18
3532 4062 4.439289 GGAAGGAGTACAGATTGCAAATGC 60.439 45.833 1.71 0.00 42.50 3.56
3543 4073 2.028020 GGTGTGAAGGGAAGGAGTACAG 60.028 54.545 0.00 0.00 0.00 2.74
3605 4135 3.666274 ACGACCGATTAATGGTGTGAAA 58.334 40.909 12.50 0.00 40.63 2.69
3651 4181 2.551721 CCATTGGTTCACAGCTCACTCT 60.552 50.000 0.00 0.00 0.00 3.24
3682 4212 1.867698 GCGGCTGCTGCAACTTTTAAA 60.868 47.619 27.51 0.00 41.91 1.52
3723 4253 5.105228 ACGTTAGGCCAAAGCTTATACAGTA 60.105 40.000 5.01 0.00 39.73 2.74
3724 4254 4.189231 CGTTAGGCCAAAGCTTATACAGT 58.811 43.478 5.01 0.00 39.73 3.55
3725 4255 4.189231 ACGTTAGGCCAAAGCTTATACAG 58.811 43.478 5.01 0.00 39.73 2.74
3726 4256 4.210724 ACGTTAGGCCAAAGCTTATACA 57.789 40.909 5.01 0.00 39.73 2.29
3727 4257 4.874396 AGAACGTTAGGCCAAAGCTTATAC 59.126 41.667 5.01 0.00 39.73 1.47
3776 4306 5.334414 CGAGTGATCCAAAAGAACAAAGGAG 60.334 44.000 0.00 0.00 0.00 3.69
3789 4319 2.151202 GGACAAAAGCGAGTGATCCAA 58.849 47.619 0.00 0.00 0.00 3.53
3859 4392 9.924650 AACTTAATACTCATTCTACAAGACGTT 57.075 29.630 0.00 0.00 0.00 3.99
4134 4667 7.628769 AAAAATGAAGTGCACCAGAATTTTT 57.371 28.000 23.41 23.41 33.30 1.94
4157 4691 7.946207 TGAAGTGCACCAAATAGTCAATAAAA 58.054 30.769 14.63 0.00 0.00 1.52
4158 4692 7.517614 TGAAGTGCACCAAATAGTCAATAAA 57.482 32.000 14.63 0.00 0.00 1.40
4159 4693 7.701539 ATGAAGTGCACCAAATAGTCAATAA 57.298 32.000 14.63 0.00 0.00 1.40
4160 4694 7.701539 AATGAAGTGCACCAAATAGTCAATA 57.298 32.000 14.63 0.00 0.00 1.90
4161 4695 6.594788 AATGAAGTGCACCAAATAGTCAAT 57.405 33.333 14.63 0.00 0.00 2.57
4162 4696 6.403866 AAATGAAGTGCACCAAATAGTCAA 57.596 33.333 14.63 0.00 0.00 3.18
4163 4697 6.403866 AAAATGAAGTGCACCAAATAGTCA 57.596 33.333 14.63 6.42 0.00 3.41
4164 4698 5.863935 GGAAAATGAAGTGCACCAAATAGTC 59.136 40.000 14.63 4.17 0.00 2.59
4165 4699 5.539955 AGGAAAATGAAGTGCACCAAATAGT 59.460 36.000 14.63 0.00 0.00 2.12
4166 4700 6.029346 AGGAAAATGAAGTGCACCAAATAG 57.971 37.500 14.63 0.00 0.00 1.73
4167 4701 6.222389 CAAGGAAAATGAAGTGCACCAAATA 58.778 36.000 14.63 0.00 0.00 1.40
4168 4702 4.961438 AGGAAAATGAAGTGCACCAAAT 57.039 36.364 14.63 1.16 0.00 2.32
4169 4703 4.440880 CAAGGAAAATGAAGTGCACCAAA 58.559 39.130 14.63 0.00 0.00 3.28
4170 4704 3.740764 GCAAGGAAAATGAAGTGCACCAA 60.741 43.478 14.63 0.00 32.29 3.67
4171 4705 2.224018 GCAAGGAAAATGAAGTGCACCA 60.224 45.455 14.63 5.64 32.29 4.17
4172 4706 2.224018 TGCAAGGAAAATGAAGTGCACC 60.224 45.455 14.63 0.00 37.09 5.01
4173 4707 3.096489 TGCAAGGAAAATGAAGTGCAC 57.904 42.857 9.40 9.40 37.09 4.57
4174 4708 2.429971 TGTGCAAGGAAAATGAAGTGCA 59.570 40.909 0.00 0.00 39.53 4.57
4175 4709 3.096489 TGTGCAAGGAAAATGAAGTGC 57.904 42.857 0.00 0.00 0.00 4.40
4176 4710 4.446385 CACATGTGCAAGGAAAATGAAGTG 59.554 41.667 13.94 0.00 0.00 3.16
4177 4711 4.099881 ACACATGTGCAAGGAAAATGAAGT 59.900 37.500 25.68 0.00 0.00 3.01
4178 4712 4.624015 ACACATGTGCAAGGAAAATGAAG 58.376 39.130 25.68 0.00 0.00 3.02
4179 4713 4.669206 ACACATGTGCAAGGAAAATGAA 57.331 36.364 25.68 0.00 0.00 2.57
4180 4714 4.669206 AACACATGTGCAAGGAAAATGA 57.331 36.364 25.68 0.00 0.00 2.57
4181 4715 5.752472 TGTAAACACATGTGCAAGGAAAATG 59.248 36.000 25.68 0.00 0.00 2.32
4182 4716 5.911752 TGTAAACACATGTGCAAGGAAAAT 58.088 33.333 25.68 0.00 0.00 1.82
4183 4717 5.330455 TGTAAACACATGTGCAAGGAAAA 57.670 34.783 25.68 1.56 0.00 2.29
4184 4718 4.991153 TGTAAACACATGTGCAAGGAAA 57.009 36.364 25.68 3.08 0.00 3.13
4185 4719 4.991153 TTGTAAACACATGTGCAAGGAA 57.009 36.364 25.68 10.50 0.00 3.36
4186 4720 4.991153 TTTGTAAACACATGTGCAAGGA 57.009 36.364 25.68 4.58 0.00 3.36
4187 4721 5.349817 TGTTTTTGTAAACACATGTGCAAGG 59.650 36.000 25.68 1.80 46.46 3.61
4188 4722 6.400579 TGTTTTTGTAAACACATGTGCAAG 57.599 33.333 25.68 2.21 46.46 4.01
4199 4733 7.463515 GCACCTTACACATGTGTTTTTGTAAAC 60.464 37.037 34.66 13.69 41.83 2.01
4200 4734 6.531948 GCACCTTACACATGTGTTTTTGTAAA 59.468 34.615 34.66 19.93 41.83 2.01
4201 4735 6.037098 GCACCTTACACATGTGTTTTTGTAA 58.963 36.000 34.66 20.60 41.83 2.41
4202 4736 5.125578 TGCACCTTACACATGTGTTTTTGTA 59.874 36.000 34.66 21.80 41.83 2.41
4203 4737 4.081972 TGCACCTTACACATGTGTTTTTGT 60.082 37.500 34.66 22.65 41.83 2.83
4204 4738 4.267452 GTGCACCTTACACATGTGTTTTTG 59.733 41.667 34.66 24.84 41.83 2.44
4205 4739 4.159506 AGTGCACCTTACACATGTGTTTTT 59.840 37.500 34.66 14.06 41.83 1.94
4206 4740 3.699038 AGTGCACCTTACACATGTGTTTT 59.301 39.130 34.66 14.44 41.83 2.43
4207 4741 3.287222 AGTGCACCTTACACATGTGTTT 58.713 40.909 34.66 15.19 41.83 2.83
4208 4742 2.930950 AGTGCACCTTACACATGTGTT 58.069 42.857 34.66 19.27 41.83 3.32
4209 4743 2.638480 AGTGCACCTTACACATGTGT 57.362 45.000 32.47 32.47 46.87 3.72
4218 4752 5.899120 TGTGTTTTTGTAAGTGCACCTTA 57.101 34.783 14.63 8.81 34.46 2.69
4219 4753 4.792521 TGTGTTTTTGTAAGTGCACCTT 57.207 36.364 14.63 9.84 37.17 3.50
4220 4754 4.159506 ACATGTGTTTTTGTAAGTGCACCT 59.840 37.500 14.63 2.32 0.00 4.00
4221 4755 4.267452 CACATGTGTTTTTGTAAGTGCACC 59.733 41.667 18.03 0.00 0.00 5.01
4222 4756 4.862018 ACACATGTGTTTTTGTAAGTGCAC 59.138 37.500 25.76 9.40 41.83 4.57
4223 4757 5.065704 ACACATGTGTTTTTGTAAGTGCA 57.934 34.783 25.76 0.00 41.83 4.57
4224 4758 6.198216 CCTTACACATGTGTTTTTGTAAGTGC 59.802 38.462 34.66 0.00 45.23 4.40
4225 4759 7.219917 CACCTTACACATGTGTTTTTGTAAGTG 59.780 37.037 34.66 23.46 45.23 3.16
4226 4760 7.254852 CACCTTACACATGTGTTTTTGTAAGT 58.745 34.615 34.66 17.80 45.23 2.24
4227 4761 6.198216 GCACCTTACACATGTGTTTTTGTAAG 59.802 38.462 34.66 27.21 45.82 2.34
4228 4762 6.037098 GCACCTTACACATGTGTTTTTGTAA 58.963 36.000 34.66 20.60 41.83 2.41
4229 4763 5.125578 TGCACCTTACACATGTGTTTTTGTA 59.874 36.000 34.66 21.80 41.83 2.41
4230 4764 4.081972 TGCACCTTACACATGTGTTTTTGT 60.082 37.500 34.66 22.65 41.83 2.83
4231 4765 4.267452 GTGCACCTTACACATGTGTTTTTG 59.733 41.667 34.66 24.84 41.83 2.44
4232 4766 4.159506 AGTGCACCTTACACATGTGTTTTT 59.840 37.500 34.66 14.06 41.83 1.94
4233 4767 3.699038 AGTGCACCTTACACATGTGTTTT 59.301 39.130 34.66 14.44 41.83 2.43
4234 4768 3.287222 AGTGCACCTTACACATGTGTTT 58.713 40.909 34.66 15.19 41.83 2.83
4235 4769 2.930950 AGTGCACCTTACACATGTGTT 58.069 42.857 34.66 19.27 41.83 3.32
4236 4770 2.638480 AGTGCACCTTACACATGTGT 57.362 45.000 32.47 32.47 46.87 3.72
4237 4771 2.877786 TGAAGTGCACCTTACACATGTG 59.122 45.455 24.25 24.25 40.59 3.21
4238 4772 3.207265 TGAAGTGCACCTTACACATGT 57.793 42.857 14.63 0.00 40.59 3.21
4239 4773 4.771590 AATGAAGTGCACCTTACACATG 57.228 40.909 14.63 0.00 40.59 3.21
4240 4774 5.278957 GGAAAATGAAGTGCACCTTACACAT 60.279 40.000 14.63 7.60 40.59 3.21
4241 4775 4.037446 GGAAAATGAAGTGCACCTTACACA 59.963 41.667 14.63 5.52 40.59 3.72
4242 4776 4.278419 AGGAAAATGAAGTGCACCTTACAC 59.722 41.667 14.63 0.00 38.35 2.90
4243 4777 4.469657 AGGAAAATGAAGTGCACCTTACA 58.530 39.130 14.63 9.16 32.03 2.41
4244 4778 5.453567 AAGGAAAATGAAGTGCACCTTAC 57.546 39.130 14.63 3.23 35.02 2.34
4245 4779 6.016610 GTGTAAGGAAAATGAAGTGCACCTTA 60.017 38.462 14.63 7.87 37.44 2.69
4246 4780 4.892934 TGTAAGGAAAATGAAGTGCACCTT 59.107 37.500 14.63 8.93 39.21 3.50
4247 4781 4.278419 GTGTAAGGAAAATGAAGTGCACCT 59.722 41.667 14.63 0.00 0.00 4.00
4248 4782 4.037446 TGTGTAAGGAAAATGAAGTGCACC 59.963 41.667 14.63 0.00 0.00 5.01
4249 4783 5.181690 TGTGTAAGGAAAATGAAGTGCAC 57.818 39.130 9.40 9.40 0.00 4.57
4250 4784 5.301551 ACATGTGTAAGGAAAATGAAGTGCA 59.698 36.000 0.00 0.00 0.00 4.57
4251 4785 5.772521 ACATGTGTAAGGAAAATGAAGTGC 58.227 37.500 0.00 0.00 0.00 4.40
4252 4786 9.912634 AAATACATGTGTAAGGAAAATGAAGTG 57.087 29.630 9.11 0.00 33.76 3.16
4275 4809 9.187455 CCAACGCAACTTATAGTTTACAAAAAT 57.813 29.630 0.00 0.00 36.03 1.82
4303 4838 8.565896 ACAGCACATATAGAAGAAACAATCAA 57.434 30.769 0.00 0.00 0.00 2.57
4394 4932 2.029623 CAATCTTGGCATAAGCAGGCT 58.970 47.619 0.00 0.00 44.61 4.58
4428 4967 3.820467 TCATGTGCACTTGGAAGTAAAGG 59.180 43.478 26.93 2.68 37.08 3.11
4488 5028 3.057526 TCAGTGATTCGTAGTGTCCACAG 60.058 47.826 0.00 0.00 0.00 3.66
4500 5040 0.376152 GGCAGTGCATCAGTGATTCG 59.624 55.000 18.61 0.00 36.99 3.34
4572 5112 6.498304 CCAGAAAACATAGTGATGCAATACC 58.502 40.000 0.00 0.00 36.43 2.73
4636 5176 8.617290 AAACAGTTCCAGTATTAAACTTCGAT 57.383 30.769 0.00 0.00 35.76 3.59
4696 5237 3.803082 CATTGGTGCGAGCCACGG 61.803 66.667 0.00 0.00 45.62 4.94
4894 5443 4.202070 CGGAGGTCTGAAGAACTTCTATCC 60.202 50.000 14.31 12.50 43.22 2.59
4921 5470 1.271597 ACTTCCTTGTCATGGCCACTC 60.272 52.381 8.16 1.47 0.00 3.51
4933 5482 5.768164 TCCCTTGCTTTTAGTTACTTCCTTG 59.232 40.000 0.00 0.00 0.00 3.61
4934 5483 5.768662 GTCCCTTGCTTTTAGTTACTTCCTT 59.231 40.000 0.00 0.00 0.00 3.36
4935 5484 5.314529 GTCCCTTGCTTTTAGTTACTTCCT 58.685 41.667 0.00 0.00 0.00 3.36
4936 5485 4.153655 CGTCCCTTGCTTTTAGTTACTTCC 59.846 45.833 0.00 0.00 0.00 3.46
4937 5486 4.153655 CCGTCCCTTGCTTTTAGTTACTTC 59.846 45.833 0.00 0.00 0.00 3.01
4938 5487 4.070009 CCGTCCCTTGCTTTTAGTTACTT 58.930 43.478 0.00 0.00 0.00 2.24
4939 5488 3.558533 CCCGTCCCTTGCTTTTAGTTACT 60.559 47.826 0.00 0.00 0.00 2.24
4940 5489 2.745821 CCCGTCCCTTGCTTTTAGTTAC 59.254 50.000 0.00 0.00 0.00 2.50
4941 5490 2.290450 CCCCGTCCCTTGCTTTTAGTTA 60.290 50.000 0.00 0.00 0.00 2.24
4942 5491 1.546998 CCCCGTCCCTTGCTTTTAGTT 60.547 52.381 0.00 0.00 0.00 2.24
4943 5492 0.037734 CCCCGTCCCTTGCTTTTAGT 59.962 55.000 0.00 0.00 0.00 2.24
4944 5493 0.326927 TCCCCGTCCCTTGCTTTTAG 59.673 55.000 0.00 0.00 0.00 1.85
4945 5494 0.772384 TTCCCCGTCCCTTGCTTTTA 59.228 50.000 0.00 0.00 0.00 1.52
4946 5495 0.539669 CTTCCCCGTCCCTTGCTTTT 60.540 55.000 0.00 0.00 0.00 2.27
4947 5496 1.074951 CTTCCCCGTCCCTTGCTTT 59.925 57.895 0.00 0.00 0.00 3.51
4948 5497 2.154074 ACTTCCCCGTCCCTTGCTT 61.154 57.895 0.00 0.00 0.00 3.91
4949 5498 2.529389 ACTTCCCCGTCCCTTGCT 60.529 61.111 0.00 0.00 0.00 3.91
4950 5499 2.359975 CACTTCCCCGTCCCTTGC 60.360 66.667 0.00 0.00 0.00 4.01
5026 5593 1.355720 CCCTCCCCTTGTTTGTCAGAT 59.644 52.381 0.00 0.00 0.00 2.90
5430 5997 8.190784 CACCCTTAATAATTGAAGTGAACATCC 58.809 37.037 0.00 0.00 0.00 3.51
5636 6230 3.257873 TCAGAGTCTTTCTCCTGCTTGAG 59.742 47.826 0.00 0.00 43.71 3.02
5707 6301 5.818887 TCCAAATCATCTTTGTCCTCATCA 58.181 37.500 0.00 0.00 0.00 3.07
5805 6399 1.808945 AGTGCTGCTTGTGCTTATGTC 59.191 47.619 0.00 0.00 40.48 3.06
5808 6402 1.271543 TGGAGTGCTGCTTGTGCTTAT 60.272 47.619 0.00 0.00 40.48 1.73
5848 6442 3.906014 TCTTCCGAAGAGCTATGATCG 57.094 47.619 6.75 0.00 32.71 3.69
5920 6514 3.447229 TCCTATGCTCGTCATCTTCAACA 59.553 43.478 0.00 0.00 36.63 3.33
5922 6516 3.068732 CCTCCTATGCTCGTCATCTTCAA 59.931 47.826 0.00 0.00 36.63 2.69
5996 6590 4.637534 GCCAAGAGTTTGCTCATTGAGATA 59.362 41.667 17.87 2.55 44.00 1.98
6024 6618 1.028905 CGTGTTTTGGGAGGCTTCAA 58.971 50.000 0.00 0.00 0.00 2.69
6105 6699 2.111384 GCTCATCTGGGACCTGAGTTA 58.889 52.381 9.53 0.00 38.88 2.24
6178 6772 8.311109 ACATGATAGTACAGTGTTACATCACAA 58.689 33.333 0.00 0.00 40.37 3.33
6418 7028 8.876275 AAACTATCGTAGTGTCAAAAAGTACA 57.124 30.769 0.00 0.00 39.39 2.90
6419 7029 9.577003 CAAAACTATCGTAGTGTCAAAAAGTAC 57.423 33.333 0.00 0.00 39.39 2.73
6422 7035 7.111593 GCACAAAACTATCGTAGTGTCAAAAAG 59.888 37.037 0.00 0.00 39.39 2.27
6446 7059 2.248248 CAAGATATACTCCCTCGGGCA 58.752 52.381 0.00 0.00 34.68 5.36
6450 7063 4.855715 TCAAGCAAGATATACTCCCTCG 57.144 45.455 0.00 0.00 0.00 4.63
6506 7679 6.019559 GTGCAACATTTTCTTCAGGAAACTTC 60.020 38.462 0.00 0.00 39.19 3.01
6552 7725 7.237055 GGTAGGTATAGTTCCCTGGAATGTATT 59.763 40.741 1.26 0.00 36.45 1.89
6553 7726 6.729569 GGTAGGTATAGTTCCCTGGAATGTAT 59.270 42.308 1.26 5.65 36.45 2.29
6561 7734 3.646637 CCCTTGGTAGGTATAGTTCCCTG 59.353 52.174 0.00 0.00 40.19 4.45
6596 7769 9.342308 TCTGTTGTTTCTTTAGATCAACAAGAT 57.658 29.630 20.49 0.00 42.46 2.40
6597 7770 8.731275 TCTGTTGTTTCTTTAGATCAACAAGA 57.269 30.769 20.49 17.75 42.46 3.02
6600 7773 7.041780 GCTCTCTGTTGTTTCTTTAGATCAACA 60.042 37.037 19.68 19.68 41.73 3.33
6603 7776 6.524734 TGCTCTCTGTTGTTTCTTTAGATCA 58.475 36.000 0.00 0.00 0.00 2.92
6604 7777 7.426929 TTGCTCTCTGTTGTTTCTTTAGATC 57.573 36.000 0.00 0.00 0.00 2.75
6605 7778 7.807977 TTTGCTCTCTGTTGTTTCTTTAGAT 57.192 32.000 0.00 0.00 0.00 1.98
6606 7779 7.624360 TTTTGCTCTCTGTTGTTTCTTTAGA 57.376 32.000 0.00 0.00 0.00 2.10
6607 7780 8.862550 AATTTTGCTCTCTGTTGTTTCTTTAG 57.137 30.769 0.00 0.00 0.00 1.85
6609 7782 9.087424 GTAAATTTTGCTCTCTGTTGTTTCTTT 57.913 29.630 0.00 0.00 0.00 2.52
6610 7783 8.470002 AGTAAATTTTGCTCTCTGTTGTTTCTT 58.530 29.630 0.00 0.00 0.00 2.52
6611 7784 7.917505 CAGTAAATTTTGCTCTCTGTTGTTTCT 59.082 33.333 0.00 0.00 0.00 2.52
6612 7785 7.306225 GCAGTAAATTTTGCTCTCTGTTGTTTC 60.306 37.037 7.47 0.00 37.35 2.78
6613 7786 6.476706 GCAGTAAATTTTGCTCTCTGTTGTTT 59.523 34.615 7.47 0.00 37.35 2.83
6614 7787 5.979517 GCAGTAAATTTTGCTCTCTGTTGTT 59.020 36.000 7.47 0.00 37.35 2.83
6615 7788 5.507985 GGCAGTAAATTTTGCTCTCTGTTGT 60.508 40.000 13.16 0.00 40.15 3.32
6616 7789 4.919754 GGCAGTAAATTTTGCTCTCTGTTG 59.080 41.667 13.16 0.00 40.15 3.33
6617 7790 4.320494 CGGCAGTAAATTTTGCTCTCTGTT 60.320 41.667 13.16 0.00 40.15 3.16
6618 7791 3.189287 CGGCAGTAAATTTTGCTCTCTGT 59.811 43.478 13.16 0.00 40.15 3.41
6619 7792 3.189287 ACGGCAGTAAATTTTGCTCTCTG 59.811 43.478 13.16 6.75 40.15 3.35
6620 7793 3.412386 ACGGCAGTAAATTTTGCTCTCT 58.588 40.909 13.16 0.00 40.15 3.10
6623 7796 7.024768 TGTTATAACGGCAGTAAATTTTGCTC 58.975 34.615 13.16 4.68 40.15 4.26
6661 7834 9.601217 ACTTGAAACTATGTCTGGAATGTATAC 57.399 33.333 0.00 0.00 0.00 1.47
6663 7836 8.950210 CAACTTGAAACTATGTCTGGAATGTAT 58.050 33.333 0.00 0.00 0.00 2.29
6666 7839 7.206981 ACAACTTGAAACTATGTCTGGAATG 57.793 36.000 0.00 0.00 0.00 2.67
6667 7840 7.823745 AACAACTTGAAACTATGTCTGGAAT 57.176 32.000 0.00 0.00 0.00 3.01
6668 7841 7.042321 CGTAACAACTTGAAACTATGTCTGGAA 60.042 37.037 0.00 0.00 0.00 3.53
6669 7842 6.422701 CGTAACAACTTGAAACTATGTCTGGA 59.577 38.462 0.00 0.00 0.00 3.86
6726 9582 6.688578 TCAGATAGAAGCAGACTACGTTTTT 58.311 36.000 0.00 0.00 0.00 1.94
6727 9583 6.268825 TCAGATAGAAGCAGACTACGTTTT 57.731 37.500 0.00 0.00 0.00 2.43
6728 9584 5.899120 TCAGATAGAAGCAGACTACGTTT 57.101 39.130 0.00 0.00 0.00 3.60
6729 9585 5.183331 TGTTCAGATAGAAGCAGACTACGTT 59.817 40.000 0.00 0.00 36.78 3.99
6730 9586 4.700692 TGTTCAGATAGAAGCAGACTACGT 59.299 41.667 0.00 0.00 36.78 3.57
6731 9587 5.031578 GTGTTCAGATAGAAGCAGACTACG 58.968 45.833 0.00 0.00 36.78 3.51
6733 9589 4.096532 CGGTGTTCAGATAGAAGCAGACTA 59.903 45.833 0.00 0.00 36.78 2.59
6734 9590 3.119316 CGGTGTTCAGATAGAAGCAGACT 60.119 47.826 0.00 0.00 36.78 3.24
6735 9591 3.182967 CGGTGTTCAGATAGAAGCAGAC 58.817 50.000 0.00 0.00 36.78 3.51
6736 9592 2.826128 ACGGTGTTCAGATAGAAGCAGA 59.174 45.455 0.00 0.00 36.78 4.26
6737 9593 3.238108 ACGGTGTTCAGATAGAAGCAG 57.762 47.619 0.00 0.00 36.78 4.24
6756 9612 3.959943 ACAAAACAAACACGCTGGATAC 58.040 40.909 0.00 0.00 0.00 2.24
6786 9642 4.521639 AGTATTCGATCTGGTGCCGTTATA 59.478 41.667 0.00 0.00 0.00 0.98
6787 9643 2.910688 ATTCGATCTGGTGCCGTTAT 57.089 45.000 0.00 0.00 0.00 1.89
6840 9696 3.071479 TCTGTAGGATCGGCACAAAAAC 58.929 45.455 0.00 0.00 0.00 2.43
6845 9701 2.301870 ACTTTTCTGTAGGATCGGCACA 59.698 45.455 0.00 0.00 0.00 4.57
6846 9702 2.973945 ACTTTTCTGTAGGATCGGCAC 58.026 47.619 0.00 0.00 0.00 5.01
6847 9703 3.118884 GGTACTTTTCTGTAGGATCGGCA 60.119 47.826 0.00 0.00 0.00 5.69
6848 9704 3.132467 AGGTACTTTTCTGTAGGATCGGC 59.868 47.826 0.00 0.00 27.25 5.54
6849 9705 4.401519 TCAGGTACTTTTCTGTAGGATCGG 59.598 45.833 0.00 0.00 34.60 4.18
6850 9706 5.578005 TCAGGTACTTTTCTGTAGGATCG 57.422 43.478 0.00 0.00 34.60 3.69
6851 9707 6.310711 CGTTTCAGGTACTTTTCTGTAGGATC 59.689 42.308 0.00 0.00 34.60 3.36
6854 9710 4.151867 GCGTTTCAGGTACTTTTCTGTAGG 59.848 45.833 0.00 0.00 34.60 3.18
6855 9711 4.989168 AGCGTTTCAGGTACTTTTCTGTAG 59.011 41.667 0.00 0.00 34.60 2.74
6856 9712 4.952460 AGCGTTTCAGGTACTTTTCTGTA 58.048 39.130 0.00 0.00 34.60 2.74
6858 9714 4.813296 AAGCGTTTCAGGTACTTTTCTG 57.187 40.909 0.00 0.00 34.60 3.02
6859 9715 8.788325 ATAATAAGCGTTTCAGGTACTTTTCT 57.212 30.769 0.00 0.00 34.60 2.52
6865 9721 6.903479 CGGAAAATAATAAGCGTTTCAGGTAC 59.097 38.462 0.00 0.00 32.72 3.34
6875 9734 7.024768 TCTTTTGGAACGGAAAATAATAAGCG 58.975 34.615 0.00 0.00 0.00 4.68
6893 9752 7.518161 AGCGTTTTTCTTTTCTTTTCTTTTGG 58.482 30.769 0.00 0.00 0.00 3.28
7084 9967 1.453669 GAGGGAGATGATGGTGCCC 59.546 63.158 0.00 0.00 39.12 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.