Multiple sequence alignment - TraesCS3D01G256300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G256300 chr3D 100.000 3105 0 0 1 3105 358171504 358168400 0.000000e+00 5734.0
1 TraesCS3D01G256300 chr3D 98.387 248 4 0 220 467 129016580 129016827 1.320000e-118 436.0
2 TraesCS3D01G256300 chr3D 99.170 241 2 0 224 464 94886603 94886843 4.760000e-118 435.0
3 TraesCS3D01G256300 chr3D 99.170 241 2 0 224 464 327381957 327381717 4.760000e-118 435.0
4 TraesCS3D01G256300 chr3D 98.760 242 3 0 223 464 603126351 603126592 6.150000e-117 431.0
5 TraesCS3D01G256300 chr3D 97.600 250 4 2 224 472 466677505 466677753 7.960000e-116 427.0
6 TraesCS3D01G256300 chr3B 90.597 1223 75 26 1489 2693 462856870 462855670 0.000000e+00 1585.0
7 TraesCS3D01G256300 chr3B 95.033 604 21 3 571 1174 462857527 462856933 0.000000e+00 941.0
8 TraesCS3D01G256300 chr3B 93.478 230 7 6 3 227 462858160 462857934 4.960000e-88 335.0
9 TraesCS3D01G256300 chr3B 90.058 171 9 8 2710 2875 751011458 751011291 6.740000e-52 215.0
10 TraesCS3D01G256300 chr3B 82.573 241 35 6 2441 2679 519860653 519860888 4.060000e-49 206.0
11 TraesCS3D01G256300 chr3B 93.805 113 4 2 462 572 462857931 462857820 1.920000e-37 167.0
12 TraesCS3D01G256300 chr3A 90.309 1166 62 27 1489 2628 477415797 477414657 0.000000e+00 1480.0
13 TraesCS3D01G256300 chr3A 96.056 710 21 4 471 1174 477416568 477415860 0.000000e+00 1149.0
14 TraesCS3D01G256300 chr3A 91.484 411 34 1 2287 2696 477414150 477413740 5.810000e-157 564.0
15 TraesCS3D01G256300 chr3A 98.387 186 3 0 42 227 477416841 477416656 8.300000e-86 327.0
16 TraesCS3D01G256300 chr3A 92.958 142 10 0 2856 2997 477413737 477413596 1.130000e-49 207.0
17 TraesCS3D01G256300 chr3A 91.000 100 9 0 2987 3086 477412288 477412189 5.400000e-28 135.0
18 TraesCS3D01G256300 chr1D 96.911 259 5 3 221 477 16231989 16232246 6.150000e-117 431.0
19 TraesCS3D01G256300 chr1D 90.066 302 22 2 1199 1492 103031934 103032235 4.860000e-103 385.0
20 TraesCS3D01G256300 chr4D 98.367 245 3 1 220 464 48534353 48534596 2.210000e-116 429.0
21 TraesCS3D01G256300 chr4D 97.951 244 5 0 224 467 490889406 490889649 1.030000e-114 424.0
22 TraesCS3D01G256300 chr4D 90.635 299 21 2 1199 1490 76824679 76824381 1.040000e-104 390.0
23 TraesCS3D01G256300 chr4D 90.397 302 22 2 1199 1493 414346534 414346233 1.040000e-104 390.0
24 TraesCS3D01G256300 chr4D 84.711 242 29 6 2456 2693 8648519 8648756 5.180000e-58 235.0
25 TraesCS3D01G256300 chr4D 93.631 157 7 3 2703 2857 35722336 35722491 6.700000e-57 231.0
26 TraesCS3D01G256300 chr4D 92.857 154 8 2 2703 2856 489467197 489467347 1.450000e-53 220.0
27 TraesCS3D01G256300 chr2D 98.354 243 4 0 224 466 379857851 379857609 7.960000e-116 427.0
28 TraesCS3D01G256300 chr2D 89.935 308 23 3 1199 1498 613427453 613427146 1.040000e-104 390.0
29 TraesCS3D01G256300 chr2D 88.608 316 26 4 1185 1490 213696988 213697303 2.920000e-100 375.0
30 TraesCS3D01G256300 chr2D 96.753 154 2 3 2703 2855 537187765 537187916 1.430000e-63 254.0
31 TraesCS3D01G256300 chr2D 95.270 148 4 3 2704 2850 101884101 101884246 6.700000e-57 231.0
32 TraesCS3D01G256300 chr2D 82.661 248 34 8 2445 2688 158245940 158246182 8.720000e-51 211.0
33 TraesCS3D01G256300 chr6D 91.000 300 19 3 1199 1490 28048601 28048900 6.240000e-107 398.0
34 TraesCS3D01G256300 chr1A 90.970 299 19 2 1199 1489 540722874 540723172 2.240000e-106 396.0
35 TraesCS3D01G256300 chr7D 89.389 311 25 2 1188 1490 539381769 539382079 4.860000e-103 385.0
36 TraesCS3D01G256300 chr6A 89.769 303 23 2 1188 1482 155251959 155252261 6.280000e-102 381.0
37 TraesCS3D01G256300 chr2B 94.667 150 6 2 2703 2850 743583025 743582876 6.700000e-57 231.0
38 TraesCS3D01G256300 chr5D 94.631 149 6 2 2703 2850 410591977 410592124 2.410000e-56 230.0
39 TraesCS3D01G256300 chr5D 83.471 242 31 7 2445 2679 351395552 351395791 1.880000e-52 217.0
40 TraesCS3D01G256300 chr5D 82.231 242 41 2 2449 2688 397198361 397198120 1.130000e-49 207.0
41 TraesCS3D01G256300 chr5D 100.000 28 0 0 3078 3105 362401606 362401633 6.000000e-03 52.8
42 TraesCS3D01G256300 chr4A 94.631 149 7 1 2705 2852 678341587 678341439 2.410000e-56 230.0
43 TraesCS3D01G256300 chrUn 94.558 147 6 2 2705 2850 108762935 108763080 3.120000e-55 226.0
44 TraesCS3D01G256300 chr5A 81.349 252 42 4 2445 2693 563329260 563329011 1.890000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G256300 chr3D 358168400 358171504 3104 True 5734.000000 5734 100.000000 1 3105 1 chr3D.!!$R2 3104
1 TraesCS3D01G256300 chr3B 462855670 462858160 2490 True 757.000000 1585 93.228250 3 2693 4 chr3B.!!$R2 2690
2 TraesCS3D01G256300 chr3A 477412189 477416841 4652 True 643.666667 1480 93.365667 42 3086 6 chr3A.!!$R1 3044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 259 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.0 4.18 5.60 42.35 6.13 F
425 429 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.0 0.00 0.00 39.21 4.94 F
1154 1467 0.174845 TGCTGACCGGTAGTGCATAC 59.825 55.0 20.16 6.04 0.00 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1838 0.036388 TACGCTCAGGCCTCTTTTGG 60.036 55.0 0.00 0.0 34.44 3.28 R
1480 1841 0.905357 ACATACGCTCAGGCCTCTTT 59.095 50.0 0.00 0.0 34.44 2.52 R
2895 4113 0.030773 GACGAGACATGCGCCAGATA 59.969 55.0 4.18 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.683312 AGATGCAATAATCTCTCTCATCCA 57.317 37.500 0.00 0.00 30.91 3.41
36 37 7.997223 AGATGCAATAATCTCTCTCATCCAAAA 59.003 33.333 0.00 0.00 30.91 2.44
114 115 3.173151 GGGGTTCACCAAATTCCTTCAT 58.827 45.455 0.00 0.00 42.91 2.57
231 235 8.631480 TGTTTCCTTTTCTTTATTACTCCCTC 57.369 34.615 0.00 0.00 0.00 4.30
233 237 6.963117 TCCTTTTCTTTATTACTCCCTCCA 57.037 37.500 0.00 0.00 0.00 3.86
234 238 7.525158 TCCTTTTCTTTATTACTCCCTCCAT 57.475 36.000 0.00 0.00 0.00 3.41
235 239 7.939781 TCCTTTTCTTTATTACTCCCTCCATT 58.060 34.615 0.00 0.00 0.00 3.16
236 240 8.053355 TCCTTTTCTTTATTACTCCCTCCATTC 58.947 37.037 0.00 0.00 0.00 2.67
238 242 6.901615 TTCTTTATTACTCCCTCCATTCCA 57.098 37.500 0.00 0.00 0.00 3.53
239 243 6.901615 TCTTTATTACTCCCTCCATTCCAA 57.098 37.500 0.00 0.00 0.00 3.53
240 244 7.278724 TCTTTATTACTCCCTCCATTCCAAA 57.721 36.000 0.00 0.00 0.00 3.28
241 245 7.704727 TCTTTATTACTCCCTCCATTCCAAAA 58.295 34.615 0.00 0.00 0.00 2.44
242 246 8.343787 TCTTTATTACTCCCTCCATTCCAAAAT 58.656 33.333 0.00 0.00 0.00 1.82
243 247 9.640952 CTTTATTACTCCCTCCATTCCAAAATA 57.359 33.333 0.00 0.00 0.00 1.40
247 251 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
248 252 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
249 253 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
250 254 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
251 255 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
252 256 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
253 257 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
254 258 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
255 259 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
256 260 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
271 275 4.430765 GCGCTTCCCGAGGTCGAA 62.431 66.667 0.00 0.00 43.02 3.71
272 276 2.506438 CGCTTCCCGAGGTCGAAC 60.506 66.667 0.00 0.00 43.02 3.95
273 277 2.971452 GCTTCCCGAGGTCGAACT 59.029 61.111 0.34 0.34 43.02 3.01
274 278 1.292541 GCTTCCCGAGGTCGAACTT 59.707 57.895 3.47 0.00 43.02 2.66
275 279 0.320508 GCTTCCCGAGGTCGAACTTT 60.321 55.000 3.47 0.00 43.02 2.66
276 280 1.429463 CTTCCCGAGGTCGAACTTTG 58.571 55.000 3.47 0.00 43.02 2.77
277 281 1.000506 CTTCCCGAGGTCGAACTTTGA 59.999 52.381 3.47 0.00 43.02 2.69
278 282 0.316204 TCCCGAGGTCGAACTTTGAC 59.684 55.000 3.47 0.86 43.02 3.18
291 295 8.142348 GTCGAACTTTGACCATAAATTTAACG 57.858 34.615 1.21 0.00 0.00 3.18
292 296 8.011106 GTCGAACTTTGACCATAAATTTAACGA 58.989 33.333 1.21 0.00 0.00 3.85
293 297 8.557864 TCGAACTTTGACCATAAATTTAACGAA 58.442 29.630 1.21 1.12 0.00 3.85
294 298 8.624028 CGAACTTTGACCATAAATTTAACGAAC 58.376 33.333 1.21 0.00 0.00 3.95
295 299 8.496872 AACTTTGACCATAAATTTAACGAACG 57.503 30.769 1.21 0.00 0.00 3.95
296 300 7.863666 ACTTTGACCATAAATTTAACGAACGA 58.136 30.769 1.21 0.00 0.00 3.85
297 301 8.013378 ACTTTGACCATAAATTTAACGAACGAG 58.987 33.333 1.21 0.01 0.00 4.18
298 302 7.655236 TTGACCATAAATTTAACGAACGAGA 57.345 32.000 1.21 0.00 0.00 4.04
299 303 7.052565 TGACCATAAATTTAACGAACGAGAC 57.947 36.000 1.21 0.00 0.00 3.36
300 304 6.091169 TGACCATAAATTTAACGAACGAGACC 59.909 38.462 1.21 0.00 0.00 3.85
301 305 5.062558 ACCATAAATTTAACGAACGAGACCG 59.937 40.000 1.21 0.00 42.50 4.79
302 306 5.289193 CCATAAATTTAACGAACGAGACCGA 59.711 40.000 1.21 0.00 39.50 4.69
303 307 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
304 308 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
305 309 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
306 310 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
307 311 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
317 321 2.664851 CGACTGCGGCAGGTGAAA 60.665 61.111 31.38 0.00 35.51 2.69
318 322 2.250939 CGACTGCGGCAGGTGAAAA 61.251 57.895 31.38 0.00 35.51 2.29
319 323 1.781025 CGACTGCGGCAGGTGAAAAA 61.781 55.000 31.38 0.00 35.51 1.94
368 372 9.961265 TCGAATACGAACTCACTGATATAATTT 57.039 29.630 0.00 0.00 45.74 1.82
374 378 8.391106 ACGAACTCACTGATATAATTTTTGCTC 58.609 33.333 0.00 0.00 0.00 4.26
375 379 7.852945 CGAACTCACTGATATAATTTTTGCTCC 59.147 37.037 0.00 0.00 0.00 4.70
376 380 7.573968 ACTCACTGATATAATTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
377 381 6.260936 ACTCACTGATATAATTTTTGCTCCCG 59.739 38.462 0.00 0.00 0.00 5.14
378 382 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
379 383 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
381 385 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
382 386 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
383 387 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
384 388 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
397 401 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
398 402 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
399 403 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
400 404 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
401 405 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
402 406 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
403 407 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
404 408 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
405 409 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
406 410 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
407 411 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
408 412 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
409 413 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
410 414 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
411 415 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
412 416 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
413 417 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
414 418 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
415 419 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
416 420 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
417 421 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
418 422 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
419 423 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
421 425 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
422 426 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
423 427 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
424 428 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
425 429 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
426 430 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
427 431 1.264288 GGTCAAAGTTGAAGCACGGAG 59.736 52.381 0.00 0.00 39.21 4.63
428 432 2.210116 GTCAAAGTTGAAGCACGGAGA 58.790 47.619 0.00 0.00 39.21 3.71
429 433 2.808543 GTCAAAGTTGAAGCACGGAGAT 59.191 45.455 0.00 0.00 39.21 2.75
430 434 3.994392 GTCAAAGTTGAAGCACGGAGATA 59.006 43.478 0.00 0.00 39.21 1.98
431 435 4.092091 GTCAAAGTTGAAGCACGGAGATAG 59.908 45.833 0.00 0.00 39.21 2.08
432 436 4.021456 TCAAAGTTGAAGCACGGAGATAGA 60.021 41.667 0.00 0.00 33.55 1.98
433 437 3.791973 AGTTGAAGCACGGAGATAGAG 57.208 47.619 0.00 0.00 0.00 2.43
434 438 2.428890 AGTTGAAGCACGGAGATAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
435 439 2.427453 GTTGAAGCACGGAGATAGAGGA 59.573 50.000 0.00 0.00 0.00 3.71
436 440 2.735151 TGAAGCACGGAGATAGAGGAA 58.265 47.619 0.00 0.00 0.00 3.36
437 441 2.690497 TGAAGCACGGAGATAGAGGAAG 59.310 50.000 0.00 0.00 0.00 3.46
438 442 1.036707 AGCACGGAGATAGAGGAAGC 58.963 55.000 0.00 0.00 0.00 3.86
439 443 0.747255 GCACGGAGATAGAGGAAGCA 59.253 55.000 0.00 0.00 0.00 3.91
440 444 1.537135 GCACGGAGATAGAGGAAGCAC 60.537 57.143 0.00 0.00 0.00 4.40
441 445 2.028130 CACGGAGATAGAGGAAGCACT 58.972 52.381 0.00 0.00 0.00 4.40
442 446 3.215151 CACGGAGATAGAGGAAGCACTA 58.785 50.000 0.00 0.00 0.00 2.74
443 447 3.003897 CACGGAGATAGAGGAAGCACTAC 59.996 52.174 0.00 0.00 0.00 2.73
444 448 3.215151 CGGAGATAGAGGAAGCACTACA 58.785 50.000 0.00 0.00 0.00 2.74
445 449 3.823873 CGGAGATAGAGGAAGCACTACAT 59.176 47.826 0.00 0.00 0.00 2.29
446 450 4.279671 CGGAGATAGAGGAAGCACTACATT 59.720 45.833 0.00 0.00 0.00 2.71
447 451 5.537188 GGAGATAGAGGAAGCACTACATTG 58.463 45.833 0.00 0.00 0.00 2.82
448 452 5.069781 GGAGATAGAGGAAGCACTACATTGT 59.930 44.000 0.00 0.00 0.00 2.71
449 453 5.911752 AGATAGAGGAAGCACTACATTGTG 58.088 41.667 0.00 0.00 40.62 3.33
450 454 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
451 455 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
452 456 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
453 457 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
454 458 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
455 459 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
456 460 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
460 464 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
461 465 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
462 466 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
463 467 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
464 468 3.054361 ACATTGTGGAATGGAGGGAGTAC 60.054 47.826 0.00 0.00 43.00 2.73
465 469 2.642171 TGTGGAATGGAGGGAGTACT 57.358 50.000 0.00 0.00 0.00 2.73
466 470 3.769189 TGTGGAATGGAGGGAGTACTA 57.231 47.619 0.00 0.00 0.00 1.82
467 471 3.371965 TGTGGAATGGAGGGAGTACTAC 58.628 50.000 0.00 0.00 0.00 2.73
468 472 2.361438 GTGGAATGGAGGGAGTACTACG 59.639 54.545 0.00 0.00 0.00 3.51
469 473 2.024655 TGGAATGGAGGGAGTACTACGT 60.025 50.000 0.00 0.00 0.00 3.57
781 1081 2.674380 CCCAGCCTCCACAAGCAC 60.674 66.667 0.00 0.00 0.00 4.40
887 1187 6.037786 TGTGTCTATATATAAGGTGCAGCC 57.962 41.667 13.29 4.65 37.58 4.85
894 1194 3.891796 TATAAGGTGCAGCCGCCGATG 62.892 57.143 13.29 0.00 46.42 3.84
933 1236 8.781196 CGCCTGAAATACTAATACTGACTAGTA 58.219 37.037 0.00 0.00 43.19 1.82
989 1298 2.161486 CGTTCGCAGCTAGGAGCAC 61.161 63.158 0.64 0.00 45.56 4.40
990 1299 2.161486 GTTCGCAGCTAGGAGCACG 61.161 63.158 0.64 4.56 45.56 5.34
991 1300 3.989698 TTCGCAGCTAGGAGCACGC 62.990 63.158 0.64 2.31 45.56 5.34
992 1301 4.801624 CGCAGCTAGGAGCACGCA 62.802 66.667 11.78 0.00 45.56 5.24
1142 1455 2.947652 TCATAGGTACGTACTGCTGACC 59.052 50.000 24.07 9.45 0.00 4.02
1154 1467 0.174845 TGCTGACCGGTAGTGCATAC 59.825 55.000 20.16 6.04 0.00 2.39
1192 1553 6.061441 TCTTGTGTTAATTCCTTGAGCTGAA 58.939 36.000 0.00 0.00 0.00 3.02
1193 1554 5.947228 TGTGTTAATTCCTTGAGCTGAAG 57.053 39.130 5.87 5.87 0.00 3.02
1194 1555 4.216257 TGTGTTAATTCCTTGAGCTGAAGC 59.784 41.667 7.50 0.00 42.49 3.86
1195 1556 4.216257 GTGTTAATTCCTTGAGCTGAAGCA 59.784 41.667 7.50 0.00 45.16 3.91
1196 1557 5.012239 TGTTAATTCCTTGAGCTGAAGCAT 58.988 37.500 7.50 0.00 45.16 3.79
1197 1558 5.124457 TGTTAATTCCTTGAGCTGAAGCATC 59.876 40.000 7.50 0.48 45.16 3.91
1198 1559 2.119801 TTCCTTGAGCTGAAGCATCC 57.880 50.000 7.50 0.00 45.16 3.51
1199 1560 1.283347 TCCTTGAGCTGAAGCATCCT 58.717 50.000 7.50 0.00 45.16 3.24
1200 1561 1.632409 TCCTTGAGCTGAAGCATCCTT 59.368 47.619 7.50 0.00 45.16 3.36
1201 1562 2.040813 TCCTTGAGCTGAAGCATCCTTT 59.959 45.455 7.50 0.00 45.16 3.11
1202 1563 2.163815 CCTTGAGCTGAAGCATCCTTTG 59.836 50.000 7.50 0.00 45.16 2.77
1203 1564 1.830279 TGAGCTGAAGCATCCTTTGG 58.170 50.000 4.90 0.00 45.16 3.28
1204 1565 1.074405 TGAGCTGAAGCATCCTTTGGT 59.926 47.619 4.90 0.00 45.16 3.67
1212 1573 4.591321 AAGCATCCTTTGGTTCATAGGA 57.409 40.909 8.99 8.99 42.23 2.94
1214 1575 5.912149 AGCATCCTTTGGTTCATAGGATA 57.088 39.130 15.84 0.00 45.69 2.59
1215 1576 5.874093 AGCATCCTTTGGTTCATAGGATAG 58.126 41.667 15.84 12.41 45.69 2.08
1216 1577 5.006386 GCATCCTTTGGTTCATAGGATAGG 58.994 45.833 15.84 8.88 45.69 2.57
1217 1578 5.221925 GCATCCTTTGGTTCATAGGATAGGA 60.222 44.000 15.84 0.00 45.69 2.94
1218 1579 6.691491 GCATCCTTTGGTTCATAGGATAGGAA 60.691 42.308 15.84 0.00 45.69 3.36
1219 1580 6.901615 TCCTTTGGTTCATAGGATAGGAAA 57.098 37.500 3.54 0.00 43.51 3.13
1220 1581 7.278724 TCCTTTGGTTCATAGGATAGGAAAA 57.721 36.000 3.54 0.00 43.51 2.29
1221 1582 7.882755 TCCTTTGGTTCATAGGATAGGAAAAT 58.117 34.615 3.54 0.00 43.51 1.82
1222 1583 8.343787 TCCTTTGGTTCATAGGATAGGAAAATT 58.656 33.333 3.54 0.00 43.51 1.82
1223 1584 8.416329 CCTTTGGTTCATAGGATAGGAAAATTG 58.584 37.037 0.00 0.00 43.51 2.32
1224 1585 8.893563 TTTGGTTCATAGGATAGGAAAATTGT 57.106 30.769 0.00 0.00 43.51 2.71
1225 1586 9.983024 TTTGGTTCATAGGATAGGAAAATTGTA 57.017 29.630 0.00 0.00 43.51 2.41
1226 1587 9.627123 TTGGTTCATAGGATAGGAAAATTGTAG 57.373 33.333 0.00 0.00 43.51 2.74
1227 1588 8.998814 TGGTTCATAGGATAGGAAAATTGTAGA 58.001 33.333 0.00 0.00 43.51 2.59
1228 1589 9.847224 GGTTCATAGGATAGGAAAATTGTAGAA 57.153 33.333 0.00 0.00 43.51 2.10
1257 1618 9.730705 AAGAAAGTCATAGAAAATGAGATGACA 57.269 29.630 14.37 0.00 46.94 3.58
1258 1619 9.902684 AGAAAGTCATAGAAAATGAGATGACAT 57.097 29.630 14.37 1.96 46.94 3.06
1259 1620 9.932699 GAAAGTCATAGAAAATGAGATGACATG 57.067 33.333 14.37 0.00 46.94 3.21
1260 1621 9.458727 AAAGTCATAGAAAATGAGATGACATGT 57.541 29.630 14.37 0.00 46.94 3.21
1275 1636 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
1276 1637 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
1277 1638 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
1278 1639 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
1279 1640 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
1280 1641 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
1298 1659 6.821388 TGAGTAGGAATAGGAAAGAAGATGC 58.179 40.000 0.00 0.00 0.00 3.91
1299 1660 6.181206 AGTAGGAATAGGAAAGAAGATGCC 57.819 41.667 0.00 0.00 0.00 4.40
1300 1661 4.445557 AGGAATAGGAAAGAAGATGCCC 57.554 45.455 0.00 0.00 0.00 5.36
1301 1662 4.050757 AGGAATAGGAAAGAAGATGCCCT 58.949 43.478 0.00 0.00 0.00 5.19
1302 1663 4.480166 AGGAATAGGAAAGAAGATGCCCTT 59.520 41.667 0.00 0.00 37.93 3.95
1303 1664 5.043806 AGGAATAGGAAAGAAGATGCCCTTT 60.044 40.000 0.00 0.00 34.68 3.11
1304 1665 5.068329 GGAATAGGAAAGAAGATGCCCTTTG 59.932 44.000 0.00 0.00 34.68 2.77
1305 1666 3.814504 AGGAAAGAAGATGCCCTTTGA 57.185 42.857 0.00 0.00 34.68 2.69
1306 1667 4.328118 AGGAAAGAAGATGCCCTTTGAT 57.672 40.909 0.00 0.00 34.68 2.57
1307 1668 4.681484 AGGAAAGAAGATGCCCTTTGATT 58.319 39.130 0.00 0.00 34.68 2.57
1308 1669 4.708909 AGGAAAGAAGATGCCCTTTGATTC 59.291 41.667 0.00 0.00 34.68 2.52
1309 1670 4.463891 GGAAAGAAGATGCCCTTTGATTCA 59.536 41.667 0.00 0.00 34.68 2.57
1310 1671 5.397142 AAAGAAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.68 3.18
1311 1672 4.038271 AGAAGATGCCCTTTGATTCACA 57.962 40.909 0.00 0.00 34.68 3.58
1312 1673 4.607239 AGAAGATGCCCTTTGATTCACAT 58.393 39.130 0.00 0.00 34.68 3.21
1313 1674 4.643784 AGAAGATGCCCTTTGATTCACATC 59.356 41.667 6.23 6.23 34.68 3.06
1314 1675 3.972133 AGATGCCCTTTGATTCACATCA 58.028 40.909 13.54 0.00 37.67 3.07
1315 1676 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
1316 1677 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
1317 1678 6.131264 AGATGCCCTTTGATTCACATCATAA 58.869 36.000 13.54 0.00 39.28 1.90
1318 1679 5.840243 TGCCCTTTGATTCACATCATAAG 57.160 39.130 0.00 0.00 39.28 1.73
1319 1680 5.508567 TGCCCTTTGATTCACATCATAAGA 58.491 37.500 0.00 0.00 39.28 2.10
1320 1681 6.131264 TGCCCTTTGATTCACATCATAAGAT 58.869 36.000 0.00 0.00 39.28 2.40
1321 1682 6.608405 TGCCCTTTGATTCACATCATAAGATT 59.392 34.615 0.00 0.00 39.28 2.40
1322 1683 7.124599 TGCCCTTTGATTCACATCATAAGATTT 59.875 33.333 0.00 0.00 39.28 2.17
1323 1684 7.983484 GCCCTTTGATTCACATCATAAGATTTT 59.017 33.333 0.00 0.00 39.28 1.82
1324 1685 9.880157 CCCTTTGATTCACATCATAAGATTTTT 57.120 29.630 0.00 0.00 39.28 1.94
1333 1694 9.605275 TCACATCATAAGATTTTTGAGTCTAGG 57.395 33.333 0.00 0.00 30.20 3.02
1334 1695 8.341173 CACATCATAAGATTTTTGAGTCTAGGC 58.659 37.037 0.00 0.00 30.20 3.93
1335 1696 8.270744 ACATCATAAGATTTTTGAGTCTAGGCT 58.729 33.333 0.00 0.00 30.20 4.58
1336 1697 9.770097 CATCATAAGATTTTTGAGTCTAGGCTA 57.230 33.333 0.00 0.00 30.20 3.93
1341 1702 8.870075 AAGATTTTTGAGTCTAGGCTAATGTT 57.130 30.769 0.00 0.00 0.00 2.71
1342 1703 8.870075 AGATTTTTGAGTCTAGGCTAATGTTT 57.130 30.769 0.00 0.00 0.00 2.83
1343 1704 9.959721 AGATTTTTGAGTCTAGGCTAATGTTTA 57.040 29.630 0.00 0.00 0.00 2.01
1349 1710 8.732746 TGAGTCTAGGCTAATGTTTATTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
1350 1711 8.548877 TGAGTCTAGGCTAATGTTTATTTTCCT 58.451 33.333 0.00 0.00 33.86 3.36
1373 1734 9.843704 TCCTATGAAATATGGAAGATAGGAAGA 57.156 33.333 0.00 0.00 38.86 2.87
1394 1755 8.860780 GAAGAATTCCTGCATAGAAATAGGAT 57.139 34.615 0.65 0.00 39.83 3.24
1395 1756 9.294614 GAAGAATTCCTGCATAGAAATAGGATT 57.705 33.333 0.65 0.00 39.83 3.01
1397 1758 9.732130 AGAATTCCTGCATAGAAATAGGATTAC 57.268 33.333 0.65 0.00 38.98 1.89
1398 1759 9.507329 GAATTCCTGCATAGAAATAGGATTACA 57.493 33.333 3.67 0.00 38.98 2.41
1401 1762 9.507329 TTCCTGCATAGAAATAGGATTACATTC 57.493 33.333 0.00 0.00 38.98 2.67
1402 1763 8.103305 TCCTGCATAGAAATAGGATTACATTCC 58.897 37.037 0.00 0.00 34.54 3.01
1412 1773 5.687166 AGGATTACATTCCTACAAACCGA 57.313 39.130 0.00 0.00 44.50 4.69
1413 1774 6.057321 AGGATTACATTCCTACAAACCGAA 57.943 37.500 0.00 0.00 44.50 4.30
1414 1775 6.113411 AGGATTACATTCCTACAAACCGAAG 58.887 40.000 0.00 0.00 44.50 3.79
1415 1776 5.296035 GGATTACATTCCTACAAACCGAAGG 59.704 44.000 0.00 0.00 43.18 3.46
1416 1777 7.626121 GGATTACATTCCTACAAACCGAAGGG 61.626 46.154 0.00 0.00 42.30 3.95
1460 1821 9.942526 ACAAAAATCCTATCCTATGAAATTCCT 57.057 29.630 0.00 0.00 0.00 3.36
1466 1827 8.972662 TCCTATCCTATGAAATTCCTACATGA 57.027 34.615 0.00 0.00 0.00 3.07
1467 1828 9.566331 TCCTATCCTATGAAATTCCTACATGAT 57.434 33.333 0.00 0.00 0.00 2.45
1471 1832 8.280258 TCCTATGAAATTCCTACATGATTCCT 57.720 34.615 0.00 0.00 0.00 3.36
1472 1833 8.378565 TCCTATGAAATTCCTACATGATTCCTC 58.621 37.037 0.00 0.00 0.00 3.71
1473 1834 7.609532 CCTATGAAATTCCTACATGATTCCTCC 59.390 40.741 0.00 0.00 0.00 4.30
1474 1835 6.325993 TGAAATTCCTACATGATTCCTCCA 57.674 37.500 0.00 0.00 0.00 3.86
1475 1836 6.730447 TGAAATTCCTACATGATTCCTCCAA 58.270 36.000 0.00 0.00 0.00 3.53
1476 1837 7.181361 TGAAATTCCTACATGATTCCTCCAAA 58.819 34.615 0.00 0.00 0.00 3.28
1477 1838 7.122650 TGAAATTCCTACATGATTCCTCCAAAC 59.877 37.037 0.00 0.00 0.00 2.93
1478 1839 4.503714 TCCTACATGATTCCTCCAAACC 57.496 45.455 0.00 0.00 0.00 3.27
1479 1840 3.849574 TCCTACATGATTCCTCCAAACCA 59.150 43.478 0.00 0.00 0.00 3.67
1480 1841 4.290985 TCCTACATGATTCCTCCAAACCAA 59.709 41.667 0.00 0.00 0.00 3.67
1481 1842 5.016173 CCTACATGATTCCTCCAAACCAAA 58.984 41.667 0.00 0.00 0.00 3.28
1482 1843 5.480073 CCTACATGATTCCTCCAAACCAAAA 59.520 40.000 0.00 0.00 0.00 2.44
1483 1844 5.473066 ACATGATTCCTCCAAACCAAAAG 57.527 39.130 0.00 0.00 0.00 2.27
1484 1845 5.147032 ACATGATTCCTCCAAACCAAAAGA 58.853 37.500 0.00 0.00 0.00 2.52
1485 1846 5.244626 ACATGATTCCTCCAAACCAAAAGAG 59.755 40.000 0.00 0.00 0.00 2.85
1486 1847 4.151883 TGATTCCTCCAAACCAAAAGAGG 58.848 43.478 0.00 0.00 46.11 3.69
1487 1848 1.995376 TCCTCCAAACCAAAAGAGGC 58.005 50.000 0.00 0.00 44.67 4.70
1488 1849 0.969149 CCTCCAAACCAAAAGAGGCC 59.031 55.000 0.00 0.00 39.54 5.19
1489 1850 1.481242 CCTCCAAACCAAAAGAGGCCT 60.481 52.381 3.86 3.86 39.54 5.19
1490 1851 1.615392 CTCCAAACCAAAAGAGGCCTG 59.385 52.381 12.00 0.00 0.00 4.85
1491 1852 1.216678 TCCAAACCAAAAGAGGCCTGA 59.783 47.619 12.00 0.00 0.00 3.86
1507 1868 2.936498 GCCTGAGCGTATGTATGTTGTT 59.064 45.455 0.00 0.00 0.00 2.83
1508 1869 4.116961 GCCTGAGCGTATGTATGTTGTTA 58.883 43.478 0.00 0.00 0.00 2.41
1580 1941 3.135056 GATAGGGAACGCGGCGACT 62.135 63.158 30.94 21.12 0.00 4.18
1607 1968 0.172578 TCGTCATCTTCGCCGTGATT 59.827 50.000 0.00 0.00 0.00 2.57
1727 2088 2.125391 TGGATGCTCACGCTGCTC 60.125 61.111 0.00 0.00 36.97 4.26
1742 2103 1.152963 GCTCGCCATGGGGTATGTT 60.153 57.895 26.48 0.00 34.87 2.71
1783 2148 3.614390 CGTACCACTCCCAACTCTCTTTC 60.614 52.174 0.00 0.00 0.00 2.62
1820 2185 6.797454 TGTAACGTTTTGCCTGACTTATTTT 58.203 32.000 5.91 0.00 0.00 1.82
1822 2187 8.404000 TGTAACGTTTTGCCTGACTTATTTTTA 58.596 29.630 5.91 0.00 0.00 1.52
1935 2300 4.321745 CGCACTGTTTAATTTGATCAGCAC 59.678 41.667 0.00 0.00 0.00 4.40
1937 2308 6.611381 GCACTGTTTAATTTGATCAGCACTA 58.389 36.000 0.00 0.00 0.00 2.74
1955 2326 5.720041 AGCACTAGTAGGGAATCAAGTTGTA 59.280 40.000 2.75 0.00 0.00 2.41
1976 2347 6.811954 TGTAAGTTTGTGACTACTGATGTGA 58.188 36.000 0.00 0.00 37.72 3.58
2011 2382 7.106439 TCATTAATGACTGTTTGTGTTGGTT 57.894 32.000 14.23 0.00 0.00 3.67
2056 2427 3.118261 TGGAGGCTTTCACCATCATACTC 60.118 47.826 0.00 0.00 0.00 2.59
2086 2457 2.860582 GCAGCTCTTCTACATACTCGCC 60.861 54.545 0.00 0.00 0.00 5.54
2173 2544 3.181493 GCTTCCAAGCGTGATGATTCAAT 60.181 43.478 0.00 0.00 42.88 2.57
2197 2568 6.387465 TGCCGATATATCAACTACAACTAGC 58.613 40.000 13.11 0.00 0.00 3.42
2204 2575 1.993370 CAACTACAACTAGCCGAGCAC 59.007 52.381 0.00 0.00 0.00 4.40
2234 2617 5.353956 GCATGTGTACATCTTTGATGTGGTA 59.646 40.000 19.66 6.42 33.61 3.25
2303 2688 2.209273 GCATGTGTGAGTGTGTGTGTA 58.791 47.619 0.00 0.00 0.00 2.90
2305 2690 3.120546 GCATGTGTGAGTGTGTGTGTATC 60.121 47.826 0.00 0.00 0.00 2.24
2310 2695 4.680110 GTGTGAGTGTGTGTGTATCTGTAC 59.320 45.833 0.00 0.00 0.00 2.90
2312 2697 3.566742 TGAGTGTGTGTGTATCTGTACGT 59.433 43.478 0.00 0.00 33.36 3.57
2322 3539 5.214417 GTGTATCTGTACGTTGTGTGTGTA 58.786 41.667 0.00 0.00 33.36 2.90
2324 3541 7.022979 GTGTATCTGTACGTTGTGTGTGTATA 58.977 38.462 0.00 0.00 33.36 1.47
2369 3586 1.616620 CGCGTGATTTGTTGATTGGG 58.383 50.000 0.00 0.00 0.00 4.12
2510 3727 0.818296 TCAAACCCCACAAACGTTGG 59.182 50.000 0.00 0.00 34.12 3.77
2617 3834 7.805700 TGATATATTTGGTGTTGTGCATATCG 58.194 34.615 0.00 0.00 30.31 2.92
2696 3914 6.795098 ATGCACACTACATTACGAAAAAGA 57.205 33.333 0.00 0.00 0.00 2.52
2697 3915 6.606234 TGCACACTACATTACGAAAAAGAA 57.394 33.333 0.00 0.00 0.00 2.52
2698 3916 7.197071 TGCACACTACATTACGAAAAAGAAT 57.803 32.000 0.00 0.00 0.00 2.40
2699 3917 8.312896 TGCACACTACATTACGAAAAAGAATA 57.687 30.769 0.00 0.00 0.00 1.75
2700 3918 8.440059 TGCACACTACATTACGAAAAAGAATAG 58.560 33.333 0.00 0.00 0.00 1.73
2701 3919 7.903431 GCACACTACATTACGAAAAAGAATAGG 59.097 37.037 0.00 0.00 0.00 2.57
2702 3920 8.388103 CACACTACATTACGAAAAAGAATAGGG 58.612 37.037 0.00 0.00 0.00 3.53
2703 3921 8.098912 ACACTACATTACGAAAAAGAATAGGGT 58.901 33.333 0.00 0.00 0.00 4.34
2704 3922 8.943002 CACTACATTACGAAAAAGAATAGGGTT 58.057 33.333 0.00 0.00 0.00 4.11
2708 3926 9.457436 ACATTACGAAAAAGAATAGGGTTATGT 57.543 29.630 0.00 0.00 0.00 2.29
2709 3927 9.931210 CATTACGAAAAAGAATAGGGTTATGTC 57.069 33.333 0.00 0.00 0.00 3.06
2710 3928 9.675464 ATTACGAAAAAGAATAGGGTTATGTCA 57.325 29.630 0.00 0.00 0.00 3.58
2711 3929 7.373778 ACGAAAAAGAATAGGGTTATGTCAC 57.626 36.000 0.00 0.00 0.00 3.67
2712 3930 6.938030 ACGAAAAAGAATAGGGTTATGTCACA 59.062 34.615 0.00 0.00 0.00 3.58
2713 3931 7.610305 ACGAAAAAGAATAGGGTTATGTCACAT 59.390 33.333 0.00 0.00 0.00 3.21
2714 3932 8.122952 CGAAAAAGAATAGGGTTATGTCACATC 58.877 37.037 0.00 0.00 0.00 3.06
2715 3933 9.178758 GAAAAAGAATAGGGTTATGTCACATCT 57.821 33.333 0.00 0.00 0.00 2.90
2718 3936 9.838339 AAAGAATAGGGTTATGTCACATCTAAG 57.162 33.333 0.00 0.00 0.00 2.18
2719 3937 7.445945 AGAATAGGGTTATGTCACATCTAAGC 58.554 38.462 0.00 0.00 0.00 3.09
2720 3938 7.291182 AGAATAGGGTTATGTCACATCTAAGCT 59.709 37.037 0.00 0.00 0.00 3.74
2721 3939 5.028549 AGGGTTATGTCACATCTAAGCTG 57.971 43.478 0.00 0.00 0.00 4.24
2722 3940 4.716784 AGGGTTATGTCACATCTAAGCTGA 59.283 41.667 0.00 0.00 0.00 4.26
2723 3941 5.367937 AGGGTTATGTCACATCTAAGCTGAT 59.632 40.000 0.00 0.00 0.00 2.90
2724 3942 5.468072 GGGTTATGTCACATCTAAGCTGATG 59.532 44.000 11.48 11.48 46.61 3.07
2733 3951 5.970140 CATCTAAGCTGATGTTCACTCTG 57.030 43.478 5.99 0.00 39.05 3.35
2734 3952 5.417811 CATCTAAGCTGATGTTCACTCTGT 58.582 41.667 5.99 0.00 39.05 3.41
2735 3953 5.474578 TCTAAGCTGATGTTCACTCTGTT 57.525 39.130 0.00 0.00 0.00 3.16
2736 3954 5.858381 TCTAAGCTGATGTTCACTCTGTTT 58.142 37.500 0.00 0.00 0.00 2.83
2737 3955 4.825546 AAGCTGATGTTCACTCTGTTTG 57.174 40.909 0.00 0.00 0.00 2.93
2738 3956 3.813443 AGCTGATGTTCACTCTGTTTGT 58.187 40.909 0.00 0.00 0.00 2.83
2739 3957 3.562973 AGCTGATGTTCACTCTGTTTGTG 59.437 43.478 0.00 0.00 36.82 3.33
2740 3958 3.304257 GCTGATGTTCACTCTGTTTGTGG 60.304 47.826 0.00 0.00 36.21 4.17
2741 3959 3.879295 CTGATGTTCACTCTGTTTGTGGT 59.121 43.478 0.00 0.00 36.21 4.16
2742 3960 3.876914 TGATGTTCACTCTGTTTGTGGTC 59.123 43.478 0.00 0.00 36.21 4.02
2743 3961 3.627395 TGTTCACTCTGTTTGTGGTCT 57.373 42.857 0.00 0.00 36.21 3.85
2744 3962 3.950397 TGTTCACTCTGTTTGTGGTCTT 58.050 40.909 0.00 0.00 36.21 3.01
2745 3963 4.331968 TGTTCACTCTGTTTGTGGTCTTT 58.668 39.130 0.00 0.00 36.21 2.52
2746 3964 4.764823 TGTTCACTCTGTTTGTGGTCTTTT 59.235 37.500 0.00 0.00 36.21 2.27
2747 3965 5.242838 TGTTCACTCTGTTTGTGGTCTTTTT 59.757 36.000 0.00 0.00 36.21 1.94
2785 4003 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
2786 4004 6.974932 TTTTTGTTTCTTGTTGCTGCATTA 57.025 29.167 1.84 0.00 0.00 1.90
2787 4005 7.551035 TTTTTGTTTCTTGTTGCTGCATTAT 57.449 28.000 1.84 0.00 0.00 1.28
2788 4006 8.654230 TTTTTGTTTCTTGTTGCTGCATTATA 57.346 26.923 1.84 0.00 0.00 0.98
2789 4007 8.830201 TTTTGTTTCTTGTTGCTGCATTATAT 57.170 26.923 1.84 0.00 0.00 0.86
2790 4008 9.920133 TTTTGTTTCTTGTTGCTGCATTATATA 57.080 25.926 1.84 0.00 0.00 0.86
2796 4014 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
2797 4015 8.136800 TCTTGTTGCTGCATTATATATTTGTGG 58.863 33.333 1.84 0.00 0.00 4.17
2798 4016 6.747125 TGTTGCTGCATTATATATTTGTGGG 58.253 36.000 1.84 0.00 0.00 4.61
2799 4017 6.548993 TGTTGCTGCATTATATATTTGTGGGA 59.451 34.615 1.84 0.00 0.00 4.37
2800 4018 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
2801 4019 5.183713 TGCTGCATTATATATTTGTGGGAGC 59.816 40.000 0.00 0.00 0.00 4.70
2802 4020 5.416952 GCTGCATTATATATTTGTGGGAGCT 59.583 40.000 0.00 0.00 0.00 4.09
2803 4021 6.071728 GCTGCATTATATATTTGTGGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
2804 4022 7.121168 GCTGCATTATATATTTGTGGGAGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
2805 4023 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
2806 4024 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
2807 4025 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
2810 4028 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
2811 4029 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
2812 4030 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
2813 4031 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
2814 4032 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
2815 4033 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
2816 4034 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
2817 4035 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
2818 4036 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
2819 4037 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
2820 4038 5.163301 GGGAGCTTAGATGTGACATCCTTAA 60.163 44.000 21.05 13.11 0.00 1.85
2821 4039 6.349300 GGAGCTTAGATGTGACATCCTTAAA 58.651 40.000 21.05 10.18 0.00 1.52
2822 4040 6.823689 GGAGCTTAGATGTGACATCCTTAAAA 59.176 38.462 21.05 8.00 0.00 1.52
2823 4041 7.336931 GGAGCTTAGATGTGACATCCTTAAAAA 59.663 37.037 21.05 6.46 0.00 1.94
2895 4113 3.451890 TGTTTTGGGGTTTAGGGTGTTT 58.548 40.909 0.00 0.00 0.00 2.83
2909 4127 1.064060 GGTGTTTATCTGGCGCATGTC 59.936 52.381 10.83 0.00 0.00 3.06
2912 4130 1.258982 GTTTATCTGGCGCATGTCTCG 59.741 52.381 10.83 0.00 0.00 4.04
2920 4138 1.008424 CGCATGTCTCGTCGGCTAT 60.008 57.895 0.00 0.00 0.00 2.97
2922 4140 0.855349 GCATGTCTCGTCGGCTATTG 59.145 55.000 0.00 0.00 0.00 1.90
2946 4164 4.072131 GACAGATCCAAGCAACCAACTTA 58.928 43.478 0.00 0.00 0.00 2.24
2966 4184 1.246649 TCGCTCATTGCCAACACAAT 58.753 45.000 0.00 0.00 40.90 2.71
2997 4215 4.579454 TCACTCGTAGCAACTGTTAAGT 57.421 40.909 0.00 0.00 38.71 2.24
2998 4216 4.543692 TCACTCGTAGCAACTGTTAAGTC 58.456 43.478 0.00 0.00 34.77 3.01
2999 4217 4.277672 TCACTCGTAGCAACTGTTAAGTCT 59.722 41.667 0.00 0.00 34.77 3.24
3000 4218 4.617645 CACTCGTAGCAACTGTTAAGTCTC 59.382 45.833 0.00 0.00 34.77 3.36
3012 5548 1.389609 TAAGTCTCCGATCGCCCACC 61.390 60.000 10.32 0.00 0.00 4.61
3023 5559 4.515404 GCCCACCTGCGTAGTTAG 57.485 61.111 0.00 0.00 0.00 2.34
3053 5589 3.498777 GGCCCATTAGAGATTAAGCGAAC 59.501 47.826 0.00 0.00 0.00 3.95
3082 5618 3.151554 GTCACCGGTTTTAGGAACCATT 58.848 45.455 2.97 0.00 40.28 3.16
3086 5622 4.763279 CACCGGTTTTAGGAACCATTTACT 59.237 41.667 2.97 0.00 40.28 2.24
3087 5623 5.005740 ACCGGTTTTAGGAACCATTTACTC 58.994 41.667 0.00 0.00 40.28 2.59
3088 5624 4.397103 CCGGTTTTAGGAACCATTTACTCC 59.603 45.833 8.50 0.00 40.28 3.85
3089 5625 4.397103 CGGTTTTAGGAACCATTTACTCCC 59.603 45.833 8.50 0.00 40.28 4.30
3090 5626 5.577100 GGTTTTAGGAACCATTTACTCCCT 58.423 41.667 3.18 0.00 40.03 4.20
3091 5627 5.651139 GGTTTTAGGAACCATTTACTCCCTC 59.349 44.000 3.18 0.00 40.03 4.30
3092 5628 5.446260 TTTAGGAACCATTTACTCCCTCC 57.554 43.478 0.00 0.00 0.00 4.30
3093 5629 2.929301 AGGAACCATTTACTCCCTCCA 58.071 47.619 0.00 0.00 0.00 3.86
3094 5630 3.474920 AGGAACCATTTACTCCCTCCAT 58.525 45.455 0.00 0.00 0.00 3.41
3095 5631 3.858638 AGGAACCATTTACTCCCTCCATT 59.141 43.478 0.00 0.00 0.00 3.16
3096 5632 4.079730 AGGAACCATTTACTCCCTCCATTC 60.080 45.833 0.00 0.00 0.00 2.67
3097 5633 3.953542 ACCATTTACTCCCTCCATTCC 57.046 47.619 0.00 0.00 0.00 3.01
3098 5634 3.474920 ACCATTTACTCCCTCCATTCCT 58.525 45.455 0.00 0.00 0.00 3.36
3099 5635 4.641868 ACCATTTACTCCCTCCATTCCTA 58.358 43.478 0.00 0.00 0.00 2.94
3100 5636 5.043762 ACCATTTACTCCCTCCATTCCTAA 58.956 41.667 0.00 0.00 0.00 2.69
3101 5637 5.494706 ACCATTTACTCCCTCCATTCCTAAA 59.505 40.000 0.00 0.00 0.00 1.85
3102 5638 6.162241 ACCATTTACTCCCTCCATTCCTAAAT 59.838 38.462 0.00 0.00 0.00 1.40
3103 5639 7.352522 ACCATTTACTCCCTCCATTCCTAAATA 59.647 37.037 0.00 0.00 0.00 1.40
3104 5640 8.394040 CCATTTACTCCCTCCATTCCTAAATAT 58.606 37.037 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.943079 TTTTTGGATGAGAGAGATTATTGCA 57.057 32.000 0.00 0.00 0.00 4.08
36 37 6.412024 CCATCCCTCTAATCCCCAAATAGTTT 60.412 42.308 0.00 0.00 0.00 2.66
114 115 1.668751 GCCTAAAATCGATTGCGGACA 59.331 47.619 12.25 0.00 38.28 4.02
227 231 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
229 233 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
231 235 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
233 237 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
234 238 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
235 239 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
236 240 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
238 242 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
239 243 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
254 258 4.430765 TTCGACCTCGGGAAGCGC 62.431 66.667 0.00 0.00 40.29 5.92
255 259 2.488087 AAGTTCGACCTCGGGAAGCG 62.488 60.000 0.00 0.00 40.29 4.68
256 260 0.320508 AAAGTTCGACCTCGGGAAGC 60.321 55.000 0.00 0.00 40.29 3.86
257 261 1.000506 TCAAAGTTCGACCTCGGGAAG 59.999 52.381 0.00 0.00 40.29 3.46
258 262 1.042229 TCAAAGTTCGACCTCGGGAA 58.958 50.000 0.00 0.00 40.29 3.97
259 263 0.316204 GTCAAAGTTCGACCTCGGGA 59.684 55.000 0.00 0.00 40.29 5.14
260 264 2.823628 GTCAAAGTTCGACCTCGGG 58.176 57.895 0.00 0.00 40.29 5.14
266 270 8.011106 TCGTTAAATTTATGGTCAAAGTTCGAC 58.989 33.333 0.00 0.00 29.44 4.20
267 271 8.085720 TCGTTAAATTTATGGTCAAAGTTCGA 57.914 30.769 0.00 0.00 29.44 3.71
268 272 8.624028 GTTCGTTAAATTTATGGTCAAAGTTCG 58.376 33.333 0.00 0.00 29.44 3.95
269 273 8.624028 CGTTCGTTAAATTTATGGTCAAAGTTC 58.376 33.333 0.00 0.00 29.44 3.01
270 274 8.344098 TCGTTCGTTAAATTTATGGTCAAAGTT 58.656 29.630 0.00 0.00 31.36 2.66
271 275 7.863666 TCGTTCGTTAAATTTATGGTCAAAGT 58.136 30.769 0.00 0.00 0.00 2.66
272 276 8.225107 TCTCGTTCGTTAAATTTATGGTCAAAG 58.775 33.333 0.00 0.00 0.00 2.77
273 277 8.011106 GTCTCGTTCGTTAAATTTATGGTCAAA 58.989 33.333 0.00 0.00 0.00 2.69
274 278 7.360269 GGTCTCGTTCGTTAAATTTATGGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
275 279 6.091169 GGTCTCGTTCGTTAAATTTATGGTCA 59.909 38.462 0.00 0.00 0.00 4.02
276 280 6.472680 GGTCTCGTTCGTTAAATTTATGGTC 58.527 40.000 0.00 0.00 0.00 4.02
277 281 5.062558 CGGTCTCGTTCGTTAAATTTATGGT 59.937 40.000 0.00 0.00 0.00 3.55
278 282 5.289193 TCGGTCTCGTTCGTTAAATTTATGG 59.711 40.000 0.00 0.00 37.69 2.74
279 283 6.034256 AGTCGGTCTCGTTCGTTAAATTTATG 59.966 38.462 0.00 0.00 37.69 1.90
280 284 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
281 285 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
282 286 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
283 287 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
284 288 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
285 289 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
286 290 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
287 291 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
288 292 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
289 293 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
290 294 2.870161 CGCAGTCGGTCTCGTTCG 60.870 66.667 0.00 0.00 37.69 3.95
300 304 1.781025 TTTTTCACCTGCCGCAGTCG 61.781 55.000 18.98 9.50 0.00 4.18
301 305 2.029743 TTTTTCACCTGCCGCAGTC 58.970 52.632 18.98 0.00 0.00 3.51
302 306 4.251246 TTTTTCACCTGCCGCAGT 57.749 50.000 18.98 4.76 0.00 4.40
350 354 8.131731 GGGAGCAAAAATTATATCAGTGAGTTC 58.868 37.037 0.00 0.00 0.00 3.01
352 356 6.260936 CGGGAGCAAAAATTATATCAGTGAGT 59.739 38.462 0.00 0.00 0.00 3.41
353 357 6.662616 CGGGAGCAAAAATTATATCAGTGAG 58.337 40.000 0.00 0.00 0.00 3.51
379 383 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
381 385 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
382 386 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
383 387 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
384 388 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
386 390 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
388 392 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
389 393 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
390 394 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
391 395 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
392 396 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
393 397 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
395 399 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
396 400 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
397 401 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
398 402 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
399 403 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
400 404 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
401 405 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
402 406 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
403 407 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
404 408 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
405 409 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
406 410 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
407 411 1.264288 CTCCGTGCTTCAACTTTGACC 59.736 52.381 0.00 0.00 36.83 4.02
408 412 2.210116 TCTCCGTGCTTCAACTTTGAC 58.790 47.619 0.00 0.00 36.83 3.18
409 413 2.613026 TCTCCGTGCTTCAACTTTGA 57.387 45.000 0.00 0.00 34.92 2.69
410 414 4.245660 TCTATCTCCGTGCTTCAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
411 415 4.499183 CTCTATCTCCGTGCTTCAACTTT 58.501 43.478 0.00 0.00 0.00 2.66
412 416 3.118956 CCTCTATCTCCGTGCTTCAACTT 60.119 47.826 0.00 0.00 0.00 2.66
413 417 2.428890 CCTCTATCTCCGTGCTTCAACT 59.571 50.000 0.00 0.00 0.00 3.16
414 418 2.427453 TCCTCTATCTCCGTGCTTCAAC 59.573 50.000 0.00 0.00 0.00 3.18
415 419 2.735151 TCCTCTATCTCCGTGCTTCAA 58.265 47.619 0.00 0.00 0.00 2.69
416 420 2.437085 TCCTCTATCTCCGTGCTTCA 57.563 50.000 0.00 0.00 0.00 3.02
417 421 2.544903 GCTTCCTCTATCTCCGTGCTTC 60.545 54.545 0.00 0.00 0.00 3.86
418 422 1.410882 GCTTCCTCTATCTCCGTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
419 423 1.036707 GCTTCCTCTATCTCCGTGCT 58.963 55.000 0.00 0.00 0.00 4.40
420 424 0.747255 TGCTTCCTCTATCTCCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
421 425 2.028130 AGTGCTTCCTCTATCTCCGTG 58.972 52.381 0.00 0.00 0.00 4.94
422 426 2.445682 AGTGCTTCCTCTATCTCCGT 57.554 50.000 0.00 0.00 0.00 4.69
423 427 3.215151 TGTAGTGCTTCCTCTATCTCCG 58.785 50.000 0.00 0.00 0.00 4.63
424 428 5.069781 ACAATGTAGTGCTTCCTCTATCTCC 59.930 44.000 0.00 0.00 0.00 3.71
425 429 5.982516 CACAATGTAGTGCTTCCTCTATCTC 59.017 44.000 0.00 0.00 32.04 2.75
426 430 5.163364 CCACAATGTAGTGCTTCCTCTATCT 60.163 44.000 0.00 0.00 38.18 1.98
427 431 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
428 432 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
429 433 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
430 434 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
431 435 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
432 436 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
433 437 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
434 438 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
435 439 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
436 440 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
437 441 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
438 442 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
439 443 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
440 444 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
441 445 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
442 446 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
443 447 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
444 448 3.464828 AGTACTCCCTCCATTCCACAAT 58.535 45.455 0.00 0.00 0.00 2.71
445 449 2.915869 AGTACTCCCTCCATTCCACAA 58.084 47.619 0.00 0.00 0.00 3.33
446 450 2.642171 AGTACTCCCTCCATTCCACA 57.358 50.000 0.00 0.00 0.00 4.17
447 451 2.361438 CGTAGTACTCCCTCCATTCCAC 59.639 54.545 0.00 0.00 0.00 4.02
448 452 2.024655 ACGTAGTACTCCCTCCATTCCA 60.025 50.000 0.00 0.00 41.94 3.53
449 453 2.664015 ACGTAGTACTCCCTCCATTCC 58.336 52.381 0.00 0.00 41.94 3.01
450 454 4.459330 ACTACGTAGTACTCCCTCCATTC 58.541 47.826 26.36 0.00 45.11 2.67
451 455 4.516652 ACTACGTAGTACTCCCTCCATT 57.483 45.455 26.36 0.00 45.11 3.16
452 456 5.839517 ATACTACGTAGTACTCCCTCCAT 57.160 43.478 32.09 15.13 45.11 3.41
453 457 5.636903 AATACTACGTAGTACTCCCTCCA 57.363 43.478 32.09 13.58 45.11 3.86
454 458 5.240403 CCAAATACTACGTAGTACTCCCTCC 59.760 48.000 32.09 0.00 45.11 4.30
455 459 5.278218 GCCAAATACTACGTAGTACTCCCTC 60.278 48.000 32.09 17.99 45.11 4.30
456 460 4.582240 GCCAAATACTACGTAGTACTCCCT 59.418 45.833 32.09 16.85 45.11 4.20
457 461 4.339247 TGCCAAATACTACGTAGTACTCCC 59.661 45.833 32.09 20.56 45.11 4.30
458 462 5.505173 TGCCAAATACTACGTAGTACTCC 57.495 43.478 32.09 19.99 45.11 3.85
459 463 6.968250 AGATGCCAAATACTACGTAGTACTC 58.032 40.000 32.09 20.15 45.11 2.59
460 464 6.956202 AGATGCCAAATACTACGTAGTACT 57.044 37.500 32.09 22.33 45.11 2.73
461 465 7.080724 GGTAGATGCCAAATACTACGTAGTAC 58.919 42.308 32.09 21.05 45.11 2.73
462 466 6.772233 TGGTAGATGCCAAATACTACGTAGTA 59.228 38.462 31.69 31.69 37.53 1.82
463 467 5.595542 TGGTAGATGCCAAATACTACGTAGT 59.404 40.000 29.62 29.62 39.33 2.73
464 468 6.016527 TCTGGTAGATGCCAAATACTACGTAG 60.017 42.308 20.97 20.97 38.18 3.51
465 469 5.829391 TCTGGTAGATGCCAAATACTACGTA 59.171 40.000 0.00 0.00 38.18 3.57
466 470 4.647853 TCTGGTAGATGCCAAATACTACGT 59.352 41.667 0.00 0.00 38.18 3.57
467 471 4.982916 GTCTGGTAGATGCCAAATACTACG 59.017 45.833 0.00 0.00 38.18 3.51
468 472 6.163135 AGTCTGGTAGATGCCAAATACTAC 57.837 41.667 0.00 0.00 38.18 2.73
469 473 6.156256 ACAAGTCTGGTAGATGCCAAATACTA 59.844 38.462 0.00 0.00 38.18 1.82
867 1167 4.113354 GCGGCTGCACCTTATATATAGAC 58.887 47.826 14.08 0.00 42.15 2.59
887 1187 0.040958 GCTTAAGGATTGCATCGGCG 60.041 55.000 0.00 0.00 45.35 6.46
894 1194 0.748005 TCAGGCGGCTTAAGGATTGC 60.748 55.000 9.66 0.00 0.00 3.56
933 1236 2.499693 GCTGGGCTCTACTTCTTCTTCT 59.500 50.000 0.00 0.00 0.00 2.85
934 1237 2.419436 GGCTGGGCTCTACTTCTTCTTC 60.419 54.545 0.00 0.00 0.00 2.87
935 1238 1.557371 GGCTGGGCTCTACTTCTTCTT 59.443 52.381 0.00 0.00 0.00 2.52
1142 1455 1.112113 ACCAGGAGTATGCACTACCG 58.888 55.000 0.00 0.00 36.08 4.02
1154 1467 3.614092 ACACAAGATAATGCACCAGGAG 58.386 45.455 0.00 0.00 0.00 3.69
1192 1553 4.803329 ATCCTATGAACCAAAGGATGCT 57.197 40.909 2.36 0.00 46.16 3.79
1196 1557 6.901615 TTTCCTATCCTATGAACCAAAGGA 57.098 37.500 0.00 0.00 43.38 3.36
1197 1558 8.416329 CAATTTTCCTATCCTATGAACCAAAGG 58.584 37.037 0.00 0.00 0.00 3.11
1198 1559 8.971073 ACAATTTTCCTATCCTATGAACCAAAG 58.029 33.333 0.00 0.00 0.00 2.77
1199 1560 8.893563 ACAATTTTCCTATCCTATGAACCAAA 57.106 30.769 0.00 0.00 0.00 3.28
1200 1561 9.627123 CTACAATTTTCCTATCCTATGAACCAA 57.373 33.333 0.00 0.00 0.00 3.67
1201 1562 8.998814 TCTACAATTTTCCTATCCTATGAACCA 58.001 33.333 0.00 0.00 0.00 3.67
1202 1563 9.847224 TTCTACAATTTTCCTATCCTATGAACC 57.153 33.333 0.00 0.00 0.00 3.62
1231 1592 9.730705 TGTCATCTCATTTTCTATGACTTTCTT 57.269 29.630 13.59 0.00 45.40 2.52
1232 1593 9.902684 ATGTCATCTCATTTTCTATGACTTTCT 57.097 29.630 13.59 0.00 45.40 2.52
1233 1594 9.932699 CATGTCATCTCATTTTCTATGACTTTC 57.067 33.333 13.59 0.00 45.40 2.62
1234 1595 9.458727 ACATGTCATCTCATTTTCTATGACTTT 57.541 29.630 13.59 1.75 45.40 2.66
1249 1610 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
1250 1611 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
1251 1612 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
1252 1613 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
1253 1614 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
1254 1615 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
1272 1633 8.589338 GCATCTTCTTTCCTATTCCTACTCATA 58.411 37.037 0.00 0.00 0.00 2.15
1273 1634 7.449247 GCATCTTCTTTCCTATTCCTACTCAT 58.551 38.462 0.00 0.00 0.00 2.90
1274 1635 6.183361 GGCATCTTCTTTCCTATTCCTACTCA 60.183 42.308 0.00 0.00 0.00 3.41
1275 1636 6.227522 GGCATCTTCTTTCCTATTCCTACTC 58.772 44.000 0.00 0.00 0.00 2.59
1276 1637 5.072464 GGGCATCTTCTTTCCTATTCCTACT 59.928 44.000 0.00 0.00 0.00 2.57
1277 1638 5.072464 AGGGCATCTTCTTTCCTATTCCTAC 59.928 44.000 0.00 0.00 0.00 3.18
1278 1639 5.227593 AGGGCATCTTCTTTCCTATTCCTA 58.772 41.667 0.00 0.00 0.00 2.94
1279 1640 4.050757 AGGGCATCTTCTTTCCTATTCCT 58.949 43.478 0.00 0.00 0.00 3.36
1280 1641 4.445557 AGGGCATCTTCTTTCCTATTCC 57.554 45.455 0.00 0.00 0.00 3.01
1281 1642 5.888161 TCAAAGGGCATCTTCTTTCCTATTC 59.112 40.000 0.00 0.00 33.94 1.75
1282 1643 5.831103 TCAAAGGGCATCTTCTTTCCTATT 58.169 37.500 0.00 0.00 33.94 1.73
1283 1644 5.456921 TCAAAGGGCATCTTCTTTCCTAT 57.543 39.130 0.00 0.00 33.94 2.57
1284 1645 4.927267 TCAAAGGGCATCTTCTTTCCTA 57.073 40.909 0.00 0.00 33.94 2.94
1285 1646 3.814504 TCAAAGGGCATCTTCTTTCCT 57.185 42.857 0.00 0.00 33.94 3.36
1286 1647 4.463891 TGAATCAAAGGGCATCTTCTTTCC 59.536 41.667 0.00 0.00 33.94 3.13
1287 1648 5.047802 TGTGAATCAAAGGGCATCTTCTTTC 60.048 40.000 0.00 0.00 33.94 2.62
1288 1649 4.834496 TGTGAATCAAAGGGCATCTTCTTT 59.166 37.500 0.00 0.00 33.94 2.52
1289 1650 4.410099 TGTGAATCAAAGGGCATCTTCTT 58.590 39.130 0.00 0.00 33.94 2.52
1290 1651 4.038271 TGTGAATCAAAGGGCATCTTCT 57.962 40.909 0.00 0.00 33.94 2.85
1291 1652 4.400251 TGATGTGAATCAAAGGGCATCTTC 59.600 41.667 10.68 0.00 33.94 2.87
1292 1653 4.346730 TGATGTGAATCAAAGGGCATCTT 58.653 39.130 10.68 0.00 37.28 2.40
1293 1654 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
1294 1655 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
1295 1656 6.131264 TCTTATGATGTGAATCAAAGGGCAT 58.869 36.000 0.00 0.00 33.83 4.40
1296 1657 5.508567 TCTTATGATGTGAATCAAAGGGCA 58.491 37.500 0.00 0.00 33.83 5.36
1297 1658 6.645790 ATCTTATGATGTGAATCAAAGGGC 57.354 37.500 0.00 0.00 33.83 5.19
1298 1659 9.880157 AAAAATCTTATGATGTGAATCAAAGGG 57.120 29.630 0.00 0.00 33.83 3.95
1307 1668 9.605275 CCTAGACTCAAAAATCTTATGATGTGA 57.395 33.333 0.00 0.00 32.44 3.58
1308 1669 8.341173 GCCTAGACTCAAAAATCTTATGATGTG 58.659 37.037 0.00 0.00 32.44 3.21
1309 1670 8.270744 AGCCTAGACTCAAAAATCTTATGATGT 58.729 33.333 0.00 0.00 32.44 3.06
1310 1671 8.674263 AGCCTAGACTCAAAAATCTTATGATG 57.326 34.615 0.00 0.00 32.44 3.07
1315 1676 9.959721 AACATTAGCCTAGACTCAAAAATCTTA 57.040 29.630 0.00 0.00 0.00 2.10
1316 1677 8.870075 AACATTAGCCTAGACTCAAAAATCTT 57.130 30.769 0.00 0.00 0.00 2.40
1317 1678 8.870075 AAACATTAGCCTAGACTCAAAAATCT 57.130 30.769 0.00 0.00 0.00 2.40
1323 1684 9.174166 GGAAAATAAACATTAGCCTAGACTCAA 57.826 33.333 0.00 0.00 0.00 3.02
1324 1685 8.548877 AGGAAAATAAACATTAGCCTAGACTCA 58.451 33.333 0.00 0.00 0.00 3.41
1325 1686 8.966069 AGGAAAATAAACATTAGCCTAGACTC 57.034 34.615 0.00 0.00 0.00 3.36
1347 1708 9.843704 TCTTCCTATCTTCCATATTTCATAGGA 57.156 33.333 2.01 2.01 39.98 2.94
1352 1713 9.799106 GGAATTCTTCCTATCTTCCATATTTCA 57.201 33.333 5.23 0.00 46.57 2.69
1369 1730 8.860780 ATCCTATTTCTATGCAGGAATTCTTC 57.139 34.615 5.23 0.00 40.48 2.87
1371 1732 9.732130 GTAATCCTATTTCTATGCAGGAATTCT 57.268 33.333 5.23 0.00 40.48 2.40
1372 1733 9.507329 TGTAATCCTATTTCTATGCAGGAATTC 57.493 33.333 0.00 0.00 40.48 2.17
1375 1736 9.507329 GAATGTAATCCTATTTCTATGCAGGAA 57.493 33.333 0.00 0.00 40.48 3.36
1376 1737 8.103305 GGAATGTAATCCTATTTCTATGCAGGA 58.897 37.037 0.00 0.00 41.31 3.86
1377 1738 8.273780 GGAATGTAATCCTATTTCTATGCAGG 57.726 38.462 0.00 0.00 36.50 4.85
1391 1752 5.296035 CCTTCGGTTTGTAGGAATGTAATCC 59.704 44.000 0.00 0.00 37.32 3.01
1392 1753 5.296035 CCCTTCGGTTTGTAGGAATGTAATC 59.704 44.000 0.00 0.00 37.32 1.75
1393 1754 5.190677 CCCTTCGGTTTGTAGGAATGTAAT 58.809 41.667 0.00 0.00 37.32 1.89
1394 1755 4.581868 CCCTTCGGTTTGTAGGAATGTAA 58.418 43.478 0.00 0.00 37.32 2.41
1395 1756 3.620472 GCCCTTCGGTTTGTAGGAATGTA 60.620 47.826 0.00 0.00 37.32 2.29
1396 1757 2.878526 GCCCTTCGGTTTGTAGGAATGT 60.879 50.000 0.00 0.00 37.32 2.71
1397 1758 1.743394 GCCCTTCGGTTTGTAGGAATG 59.257 52.381 0.00 0.00 37.32 2.67
1398 1759 1.633945 AGCCCTTCGGTTTGTAGGAAT 59.366 47.619 0.00 0.00 37.32 3.01
1399 1760 1.002773 GAGCCCTTCGGTTTGTAGGAA 59.997 52.381 0.00 0.00 37.32 3.36
1400 1761 0.611714 GAGCCCTTCGGTTTGTAGGA 59.388 55.000 0.00 0.00 37.32 2.94
1401 1762 0.613777 AGAGCCCTTCGGTTTGTAGG 59.386 55.000 0.00 0.00 35.01 3.18
1402 1763 3.604875 TTAGAGCCCTTCGGTTTGTAG 57.395 47.619 0.00 0.00 0.00 2.74
1403 1764 4.354893 TTTTAGAGCCCTTCGGTTTGTA 57.645 40.909 0.00 0.00 0.00 2.41
1404 1765 2.943036 TTTAGAGCCCTTCGGTTTGT 57.057 45.000 0.00 0.00 0.00 2.83
1434 1795 9.942526 AGGAATTTCATAGGATAGGATTTTTGT 57.057 29.630 0.00 0.00 28.27 2.83
1440 1801 9.566331 TCATGTAGGAATTTCATAGGATAGGAT 57.434 33.333 0.00 0.00 28.27 3.24
1441 1802 8.972662 TCATGTAGGAATTTCATAGGATAGGA 57.027 34.615 0.00 0.00 0.00 2.94
1445 1806 8.898728 AGGAATCATGTAGGAATTTCATAGGAT 58.101 33.333 0.00 0.00 0.00 3.24
1446 1807 8.280258 AGGAATCATGTAGGAATTTCATAGGA 57.720 34.615 0.00 0.00 0.00 2.94
1447 1808 7.609532 GGAGGAATCATGTAGGAATTTCATAGG 59.390 40.741 0.00 0.00 0.00 2.57
1448 1809 8.159447 TGGAGGAATCATGTAGGAATTTCATAG 58.841 37.037 0.00 0.00 0.00 2.23
1449 1810 8.044574 TGGAGGAATCATGTAGGAATTTCATA 57.955 34.615 0.00 0.00 0.00 2.15
1450 1811 6.914665 TGGAGGAATCATGTAGGAATTTCAT 58.085 36.000 0.00 0.00 0.00 2.57
1451 1812 6.325993 TGGAGGAATCATGTAGGAATTTCA 57.674 37.500 0.00 0.00 0.00 2.69
1452 1813 7.416777 GGTTTGGAGGAATCATGTAGGAATTTC 60.417 40.741 0.00 0.00 0.00 2.17
1453 1814 6.381133 GGTTTGGAGGAATCATGTAGGAATTT 59.619 38.462 0.00 0.00 0.00 1.82
1454 1815 5.893824 GGTTTGGAGGAATCATGTAGGAATT 59.106 40.000 0.00 0.00 0.00 2.17
1455 1816 5.044179 TGGTTTGGAGGAATCATGTAGGAAT 60.044 40.000 0.00 0.00 0.00 3.01
1456 1817 4.290985 TGGTTTGGAGGAATCATGTAGGAA 59.709 41.667 0.00 0.00 0.00 3.36
1457 1818 3.849574 TGGTTTGGAGGAATCATGTAGGA 59.150 43.478 0.00 0.00 0.00 2.94
1458 1819 4.235079 TGGTTTGGAGGAATCATGTAGG 57.765 45.455 0.00 0.00 0.00 3.18
1459 1820 6.434028 TCTTTTGGTTTGGAGGAATCATGTAG 59.566 38.462 0.00 0.00 0.00 2.74
1460 1821 6.310941 TCTTTTGGTTTGGAGGAATCATGTA 58.689 36.000 0.00 0.00 0.00 2.29
1461 1822 5.147032 TCTTTTGGTTTGGAGGAATCATGT 58.853 37.500 0.00 0.00 0.00 3.21
1462 1823 5.337009 CCTCTTTTGGTTTGGAGGAATCATG 60.337 44.000 0.00 0.00 45.79 3.07
1463 1824 4.774200 CCTCTTTTGGTTTGGAGGAATCAT 59.226 41.667 0.00 0.00 45.79 2.45
1464 1825 4.151883 CCTCTTTTGGTTTGGAGGAATCA 58.848 43.478 0.00 0.00 45.79 2.57
1465 1826 3.056536 GCCTCTTTTGGTTTGGAGGAATC 60.057 47.826 11.44 0.00 45.79 2.52
1466 1827 2.899900 GCCTCTTTTGGTTTGGAGGAAT 59.100 45.455 11.44 0.00 45.79 3.01
1467 1828 2.316108 GCCTCTTTTGGTTTGGAGGAA 58.684 47.619 11.44 0.00 45.79 3.36
1468 1829 1.480498 GGCCTCTTTTGGTTTGGAGGA 60.480 52.381 11.44 0.00 45.79 3.71
1469 1830 0.969149 GGCCTCTTTTGGTTTGGAGG 59.031 55.000 0.00 0.00 45.71 4.30
1470 1831 1.615392 CAGGCCTCTTTTGGTTTGGAG 59.385 52.381 0.00 0.00 0.00 3.86
1471 1832 1.216678 TCAGGCCTCTTTTGGTTTGGA 59.783 47.619 0.00 0.00 0.00 3.53
1472 1833 1.615392 CTCAGGCCTCTTTTGGTTTGG 59.385 52.381 0.00 0.00 0.00 3.28
1473 1834 1.000171 GCTCAGGCCTCTTTTGGTTTG 60.000 52.381 0.00 0.00 0.00 2.93
1474 1835 1.332195 GCTCAGGCCTCTTTTGGTTT 58.668 50.000 0.00 0.00 0.00 3.27
1475 1836 0.890996 CGCTCAGGCCTCTTTTGGTT 60.891 55.000 0.00 0.00 34.44 3.67
1476 1837 1.302832 CGCTCAGGCCTCTTTTGGT 60.303 57.895 0.00 0.00 34.44 3.67
1477 1838 0.036388 TACGCTCAGGCCTCTTTTGG 60.036 55.000 0.00 0.00 34.44 3.28
1478 1839 1.667724 CATACGCTCAGGCCTCTTTTG 59.332 52.381 0.00 0.00 34.44 2.44
1479 1840 1.279271 ACATACGCTCAGGCCTCTTTT 59.721 47.619 0.00 0.00 34.44 2.27
1480 1841 0.905357 ACATACGCTCAGGCCTCTTT 59.095 50.000 0.00 0.00 34.44 2.52
1481 1842 1.776662 TACATACGCTCAGGCCTCTT 58.223 50.000 0.00 0.00 34.44 2.85
1482 1843 1.615883 CATACATACGCTCAGGCCTCT 59.384 52.381 0.00 0.00 34.44 3.69
1483 1844 1.341531 ACATACATACGCTCAGGCCTC 59.658 52.381 0.00 0.00 34.44 4.70
1484 1845 1.414158 ACATACATACGCTCAGGCCT 58.586 50.000 0.00 0.00 34.44 5.19
1485 1846 1.867233 CAACATACATACGCTCAGGCC 59.133 52.381 0.00 0.00 34.44 5.19
1486 1847 2.550978 ACAACATACATACGCTCAGGC 58.449 47.619 0.00 0.00 0.00 4.85
1487 1848 9.073368 GTATATAACAACATACATACGCTCAGG 57.927 37.037 0.00 0.00 0.00 3.86
1488 1849 9.620660 TGTATATAACAACATACATACGCTCAG 57.379 33.333 0.00 0.00 33.72 3.35
1489 1850 9.620660 CTGTATATAACAACATACATACGCTCA 57.379 33.333 0.00 0.00 37.10 4.26
1490 1851 9.073368 CCTGTATATAACAACATACATACGCTC 57.927 37.037 0.00 0.00 37.10 5.03
1491 1852 8.582437 ACCTGTATATAACAACATACATACGCT 58.418 33.333 0.00 0.00 37.10 5.07
1507 1868 2.158279 TCCAGCCCGGAACCTGTATATA 60.158 50.000 0.73 0.00 42.52 0.86
1508 1869 1.056660 CCAGCCCGGAACCTGTATAT 58.943 55.000 0.73 0.00 36.56 0.86
1580 1941 1.671850 GCGAAGATGACGAAGAACCCA 60.672 52.381 0.00 0.00 0.00 4.51
1727 2088 1.134220 ACTACAACATACCCCATGGCG 60.134 52.381 6.09 0.00 39.13 5.69
1742 2103 5.586243 GGTACGTAGAAGTGGTCATACTACA 59.414 44.000 0.00 0.00 34.86 2.74
1783 2148 4.708868 AACGTTACATATGCACGCATAG 57.291 40.909 21.90 10.97 41.51 2.23
1820 2185 4.042809 TCAGAAGGTGCCAAAGAGGATTAA 59.957 41.667 0.00 0.00 41.22 1.40
1822 2187 2.376518 TCAGAAGGTGCCAAAGAGGATT 59.623 45.455 0.00 0.00 41.22 3.01
1935 2300 8.936864 CAAACTTACAACTTGATTCCCTACTAG 58.063 37.037 0.00 0.00 0.00 2.57
1937 2308 7.228706 CACAAACTTACAACTTGATTCCCTACT 59.771 37.037 0.00 0.00 0.00 2.57
1955 2326 5.523916 GTGTCACATCAGTAGTCACAAACTT 59.476 40.000 0.00 0.00 39.55 2.66
1995 2366 3.859411 TCCAAACCAACACAAACAGTC 57.141 42.857 0.00 0.00 0.00 3.51
2011 2382 6.828273 CCATGGTTATCTACAAGACAATCCAA 59.172 38.462 2.57 0.00 0.00 3.53
2056 2427 3.708220 GAAGAGCTGCGTCCCCGAG 62.708 68.421 0.00 0.00 35.63 4.63
2086 2457 1.137086 CTTCACCTCCCTCCGTGTATG 59.863 57.143 0.00 0.00 0.00 2.39
2173 2544 6.387465 GCTAGTTGTAGTTGATATATCGGCA 58.613 40.000 8.19 0.44 0.00 5.69
2204 2575 4.216042 TCAAAGATGTACACATGCAACCAG 59.784 41.667 0.00 0.00 36.57 4.00
2241 2624 5.790003 CAGCAATAAACACACGATACACAAG 59.210 40.000 0.00 0.00 0.00 3.16
2303 2688 5.575606 GCTTATACACACACAACGTACAGAT 59.424 40.000 0.00 0.00 0.00 2.90
2305 2690 4.201456 CGCTTATACACACACAACGTACAG 60.201 45.833 0.00 0.00 0.00 2.74
2310 2695 3.781341 AACGCTTATACACACACAACG 57.219 42.857 0.00 0.00 0.00 4.10
2312 2697 5.062934 GCATCTAACGCTTATACACACACAA 59.937 40.000 0.00 0.00 0.00 3.33
2322 3539 3.517602 TGAACACGCATCTAACGCTTAT 58.482 40.909 0.00 0.00 0.00 1.73
2324 3541 1.726791 CTGAACACGCATCTAACGCTT 59.273 47.619 0.00 0.00 0.00 4.68
2442 3659 3.118149 ACATTATGAACGGAGGGGGTAAC 60.118 47.826 0.00 0.00 0.00 2.50
2490 3707 1.410882 CCAACGTTTGTGGGGTTTGAT 59.589 47.619 0.00 0.00 35.30 2.57
2498 3715 2.920490 CAAACTTGACCAACGTTTGTGG 59.080 45.455 10.08 6.47 41.36 4.17
2506 3723 4.609691 TTTCTCGACAAACTTGACCAAC 57.390 40.909 0.00 0.00 0.00 3.77
2510 3727 7.506296 AAATGTTTTTCTCGACAAACTTGAC 57.494 32.000 9.32 0.00 34.52 3.18
2688 3906 7.372451 TGTGACATAACCCTATTCTTTTTCG 57.628 36.000 0.00 0.00 0.00 3.46
2696 3914 7.071196 TCAGCTTAGATGTGACATAACCCTATT 59.929 37.037 0.00 0.00 0.00 1.73
2697 3915 6.554982 TCAGCTTAGATGTGACATAACCCTAT 59.445 38.462 0.00 0.00 0.00 2.57
2698 3916 5.897250 TCAGCTTAGATGTGACATAACCCTA 59.103 40.000 0.00 0.00 0.00 3.53
2699 3917 4.716784 TCAGCTTAGATGTGACATAACCCT 59.283 41.667 0.00 0.00 0.00 4.34
2700 3918 5.023533 TCAGCTTAGATGTGACATAACCC 57.976 43.478 0.00 0.00 0.00 4.11
2701 3919 6.536731 CATCAGCTTAGATGTGACATAACC 57.463 41.667 0.00 0.00 40.35 2.85
2712 3930 5.674052 ACAGAGTGAACATCAGCTTAGAT 57.326 39.130 0.00 0.00 0.00 1.98
2713 3931 5.474578 AACAGAGTGAACATCAGCTTAGA 57.525 39.130 0.00 0.00 0.00 2.10
2714 3932 5.468072 ACAAACAGAGTGAACATCAGCTTAG 59.532 40.000 0.00 0.00 0.00 2.18
2715 3933 5.237127 CACAAACAGAGTGAACATCAGCTTA 59.763 40.000 0.00 0.00 39.30 3.09
2716 3934 4.036027 CACAAACAGAGTGAACATCAGCTT 59.964 41.667 0.00 0.00 39.30 3.74
2717 3935 3.562973 CACAAACAGAGTGAACATCAGCT 59.437 43.478 0.00 0.00 39.30 4.24
2718 3936 3.304257 CCACAAACAGAGTGAACATCAGC 60.304 47.826 0.00 0.00 39.30 4.26
2719 3937 3.879295 ACCACAAACAGAGTGAACATCAG 59.121 43.478 0.00 0.00 39.30 2.90
2720 3938 3.876914 GACCACAAACAGAGTGAACATCA 59.123 43.478 0.00 0.00 39.30 3.07
2721 3939 4.130118 AGACCACAAACAGAGTGAACATC 58.870 43.478 0.00 0.00 39.30 3.06
2722 3940 4.156455 AGACCACAAACAGAGTGAACAT 57.844 40.909 0.00 0.00 39.30 2.71
2723 3941 3.627395 AGACCACAAACAGAGTGAACA 57.373 42.857 0.00 0.00 39.30 3.18
2724 3942 4.965119 AAAGACCACAAACAGAGTGAAC 57.035 40.909 0.00 0.00 39.30 3.18
2725 3943 5.975693 AAAAAGACCACAAACAGAGTGAA 57.024 34.783 0.00 0.00 39.30 3.18
2763 3981 5.876612 AATGCAGCAACAAGAAACAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
2764 3982 8.830201 ATATAATGCAGCAACAAGAAACAAAA 57.170 26.923 0.00 0.00 0.00 2.44
2770 3988 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
2771 3989 8.136800 CCACAAATATATAATGCAGCAACAAGA 58.863 33.333 0.00 0.00 0.00 3.02
2772 3990 7.383029 CCCACAAATATATAATGCAGCAACAAG 59.617 37.037 0.00 0.00 0.00 3.16
2773 3991 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
2774 3992 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
2775 3993 6.980593 TCCCACAAATATATAATGCAGCAAC 58.019 36.000 0.00 0.00 0.00 4.17
2776 3994 6.294675 GCTCCCACAAATATATAATGCAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
2777 3995 5.183713 GCTCCCACAAATATATAATGCAGCA 59.816 40.000 0.00 0.00 0.00 4.41
2778 3996 5.416952 AGCTCCCACAAATATATAATGCAGC 59.583 40.000 0.00 0.00 0.00 5.25
2779 3997 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
2780 3998 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
2781 3999 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
2784 4002 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
2785 4003 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
2786 4004 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
2787 4005 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
2788 4006 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
2789 4007 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
2790 4008 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
2791 4009 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
2792 4010 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
2793 4011 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
2794 4012 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
2795 4013 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
2796 4014 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
2797 4015 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
2798 4016 7.849804 TTTTAAGGATGTCACATCTAAGCTC 57.150 36.000 17.46 0.00 0.00 4.09
2852 4070 7.161773 ACAGTGCATCATGCTAATACTTTTT 57.838 32.000 11.84 0.00 45.31 1.94
2853 4071 6.764308 ACAGTGCATCATGCTAATACTTTT 57.236 33.333 11.84 0.00 45.31 2.27
2854 4072 6.764308 AACAGTGCATCATGCTAATACTTT 57.236 33.333 11.84 0.00 45.31 2.66
2864 4082 1.619827 ACCCCAAAACAGTGCATCATG 59.380 47.619 0.00 0.00 0.00 3.07
2867 4085 2.908688 AAACCCCAAAACAGTGCATC 57.091 45.000 0.00 0.00 0.00 3.91
2869 4087 2.035632 CCTAAACCCCAAAACAGTGCA 58.964 47.619 0.00 0.00 0.00 4.57
2895 4113 0.030773 GACGAGACATGCGCCAGATA 59.969 55.000 4.18 0.00 0.00 1.98
2909 4127 0.249073 CTGTCCCAATAGCCGACGAG 60.249 60.000 0.00 0.00 0.00 4.18
2912 4130 1.270358 GGATCTGTCCCAATAGCCGAC 60.270 57.143 0.00 0.00 38.69 4.79
2920 4138 1.547675 GGTTGCTTGGATCTGTCCCAA 60.548 52.381 0.00 0.00 44.41 4.12
2922 4140 0.038166 TGGTTGCTTGGATCTGTCCC 59.962 55.000 0.00 0.00 44.41 4.46
2946 4164 6.352729 ACAATTGTGTTGGCAATGAGCGAT 62.353 41.667 11.07 0.00 38.54 4.58
2966 4184 4.245845 TGCTACGAGTGATACACAACAA 57.754 40.909 4.75 0.00 36.74 2.83
2997 4215 3.147595 CAGGTGGGCGATCGGAGA 61.148 66.667 18.30 0.00 45.75 3.71
2998 4216 4.899239 GCAGGTGGGCGATCGGAG 62.899 72.222 18.30 0.00 0.00 4.63
3012 5548 1.539065 CCAGCCCATCTAACTACGCAG 60.539 57.143 0.00 0.00 0.00 5.18
3040 5576 4.739195 ACACTCTCAGTTCGCTTAATCTC 58.261 43.478 0.00 0.00 0.00 2.75
3042 5578 4.324936 GTGACACTCTCAGTTCGCTTAATC 59.675 45.833 0.00 0.00 0.00 1.75
3053 5589 2.240493 AAAACCGGTGACACTCTCAG 57.760 50.000 8.52 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.