Multiple sequence alignment - TraesCS3D01G256100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G256100 chr3D 100.000 3147 0 0 1 3147 357800523 357797377 0.000000e+00 5812.0
1 TraesCS3D01G256100 chr3B 92.286 1776 72 29 1 1736 459445097 459443347 0.000000e+00 2460.0
2 TraesCS3D01G256100 chr3B 91.365 938 62 12 1784 2706 459443347 459442414 0.000000e+00 1266.0
3 TraesCS3D01G256100 chr3A 91.175 1847 97 30 593 2407 477332044 477330232 0.000000e+00 2447.0
4 TraesCS3D01G256100 chr3A 92.821 599 35 6 5 598 477332745 477332150 0.000000e+00 861.0
5 TraesCS3D01G256100 chr3A 92.683 41 1 2 2536 2574 195184341 195184381 1.220000e-04 58.4
6 TraesCS3D01G256100 chr5D 93.277 238 12 4 2725 2959 398204410 398204646 6.460000e-92 348.0
7 TraesCS3D01G256100 chr4A 92.683 123 8 1 1 122 137108205 137108083 3.230000e-40 176.0
8 TraesCS3D01G256100 chr4A 90.000 50 4 1 2526 2574 720059144 720059193 2.620000e-06 63.9
9 TraesCS3D01G256100 chr2B 87.786 131 11 2 2958 3084 7841890 7842019 7.030000e-32 148.0
10 TraesCS3D01G256100 chr2A 93.878 98 6 0 2958 3055 2728695 2728792 7.030000e-32 148.0
11 TraesCS3D01G256100 chr2A 92.500 40 3 0 2526 2565 651808815 651808776 1.220000e-04 58.4
12 TraesCS3D01G256100 chr4D 90.385 52 4 1 2526 2577 428381098 428381148 2.030000e-07 67.6
13 TraesCS3D01G256100 chr5A 95.122 41 2 0 2525 2565 52278861 52278821 7.290000e-07 65.8
14 TraesCS3D01G256100 chr5A 90.196 51 4 1 2526 2576 588377966 588378015 7.290000e-07 65.8
15 TraesCS3D01G256100 chr6A 92.500 40 3 0 2526 2565 398187836 398187875 1.220000e-04 58.4
16 TraesCS3D01G256100 chr7A 92.308 39 3 0 2525 2563 528286652 528286614 4.380000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G256100 chr3D 357797377 357800523 3146 True 5812 5812 100.0000 1 3147 1 chr3D.!!$R1 3146
1 TraesCS3D01G256100 chr3B 459442414 459445097 2683 True 1863 2460 91.8255 1 2706 2 chr3B.!!$R1 2705
2 TraesCS3D01G256100 chr3A 477330232 477332745 2513 True 1654 2447 91.9980 5 2407 2 chr3A.!!$R1 2402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 777 1.016627 TAATGATCTTGCCAGTGCGC 58.983 50.0 0.0 0.0 41.78 6.09 F
1165 1316 0.879765 GAGAGGTTTCTGACGACGGA 59.120 55.0 0.0 0.0 32.53 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1860 0.179936 GATGAGGAGCCCAGGTTGAG 59.820 60.0 0.00 0.0 0.0 3.02 R
2920 3105 0.107654 ACTTGACCATAGCGCCTTCC 60.108 55.0 2.29 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
355 357 1.519455 CTGTCGGCCGTCCAATCTC 60.519 63.158 27.15 7.15 0.00 2.75
356 358 2.225791 CTGTCGGCCGTCCAATCTCA 62.226 60.000 27.15 11.07 0.00 3.27
360 362 2.189499 GGCCGTCCAATCTCATGGC 61.189 63.158 0.00 0.00 43.13 4.40
515 518 2.313317 CTACCTGGACGCCATTACCTA 58.687 52.381 0.00 0.00 30.82 3.08
560 576 4.125703 CCAGGAAAGATTCTTCAGATCCG 58.874 47.826 0.00 0.93 0.00 4.18
595 611 6.656314 CGATAGTCTGTAGATAGCTGGTAG 57.344 45.833 0.00 0.00 0.00 3.18
598 614 7.818446 CGATAGTCTGTAGATAGCTGGTAGTAA 59.182 40.741 0.00 0.00 0.00 2.24
599 615 9.504708 GATAGTCTGTAGATAGCTGGTAGTAAA 57.495 37.037 0.00 0.00 0.00 2.01
642 777 1.016627 TAATGATCTTGCCAGTGCGC 58.983 50.000 0.00 0.00 41.78 6.09
794 931 2.104928 CATGCTCGCAGTCGCCTA 59.895 61.111 0.00 0.00 35.26 3.93
816 954 1.063469 CGTTCCATAGGCGCGAAAAAT 59.937 47.619 12.10 0.00 0.00 1.82
817 955 2.285756 CGTTCCATAGGCGCGAAAAATA 59.714 45.455 12.10 0.00 0.00 1.40
818 956 3.242478 CGTTCCATAGGCGCGAAAAATAA 60.242 43.478 12.10 0.00 0.00 1.40
833 971 7.305993 CGCGAAAAATAAATAAATGAAGAGGCC 60.306 37.037 0.00 0.00 0.00 5.19
834 972 7.305993 GCGAAAAATAAATAAATGAAGAGGCCG 60.306 37.037 0.00 0.00 0.00 6.13
939 1081 1.253100 CAAAAGCCACGGGGTTACAT 58.747 50.000 5.12 0.00 43.04 2.29
1080 1228 1.518133 CGCCTTCGCTCTCTTCCTG 60.518 63.158 0.00 0.00 0.00 3.86
1117 1268 6.864560 CATATATACATGCATGCTGTTTGC 57.135 37.500 26.53 0.00 43.25 3.68
1118 1269 2.589798 ATACATGCATGCTGTTTGCC 57.410 45.000 26.53 0.00 42.00 4.52
1122 1273 2.505557 GCATGCTGTTTGCCTCGC 60.506 61.111 11.37 0.00 42.00 5.03
1123 1274 2.180017 CATGCTGTTTGCCTCGCC 59.820 61.111 0.00 0.00 42.00 5.54
1124 1275 3.064324 ATGCTGTTTGCCTCGCCC 61.064 61.111 0.00 0.00 42.00 6.13
1130 1281 3.897122 TTTGCCTCGCCCCCTTGT 61.897 61.111 0.00 0.00 0.00 3.16
1140 1291 1.135024 CGCCCCCTTGTTTTGATCATG 60.135 52.381 0.00 0.00 0.00 3.07
1165 1316 0.879765 GAGAGGTTTCTGACGACGGA 59.120 55.000 0.00 0.00 32.53 4.69
1168 1319 1.993370 GAGGTTTCTGACGACGGATTG 59.007 52.381 0.00 0.00 0.00 2.67
1169 1320 1.343465 AGGTTTCTGACGACGGATTGT 59.657 47.619 0.00 0.00 0.00 2.71
1170 1321 1.459592 GGTTTCTGACGACGGATTGTG 59.540 52.381 0.00 0.00 0.00 3.33
1171 1322 2.132762 GTTTCTGACGACGGATTGTGT 58.867 47.619 0.00 0.00 0.00 3.72
1173 1324 1.778334 TCTGACGACGGATTGTGTTG 58.222 50.000 0.00 0.00 0.00 3.33
1306 1466 2.283809 CTCCCCTGGGTCTCCGAT 59.716 66.667 12.71 0.00 36.47 4.18
1421 1581 1.409661 CCAGGGTAATTTCCTTCCCGG 60.410 57.143 0.00 0.00 44.13 5.73
1434 1595 4.653888 CCCGGCCTGAACCCGTTT 62.654 66.667 0.00 0.00 44.13 3.60
1447 1608 3.485463 ACCCGTTTCACTTTCATCTCA 57.515 42.857 0.00 0.00 0.00 3.27
1454 1620 5.904080 CGTTTCACTTTCATCTCAGAAACAC 59.096 40.000 13.93 0.00 42.81 3.32
1483 1649 4.076394 GGGGAACAACAACTGCAATACTA 58.924 43.478 0.00 0.00 0.00 1.82
1497 1664 7.042335 ACTGCAATACTATTCCTGTACTGAAC 58.958 38.462 0.60 0.00 0.00 3.18
1651 1819 2.879070 GCATGGCGTCGCTCATCTG 61.879 63.158 18.11 10.34 0.00 2.90
1670 1838 1.213537 CATGTTTGCTTCCCCGCTG 59.786 57.895 0.00 0.00 0.00 5.18
1688 1856 4.807039 GCCGTCATGGTACGCCGT 62.807 66.667 0.00 0.00 41.51 5.68
1692 1860 4.501714 TCATGGTACGCCGTCCGC 62.502 66.667 0.00 0.00 41.76 5.54
1697 1865 3.177249 GTACGCCGTCCGCTCAAC 61.177 66.667 0.00 0.00 41.76 3.18
1737 1905 8.435982 CAAAATTTCTCCTACCTAGATCATCCT 58.564 37.037 0.00 0.00 0.00 3.24
1755 1923 1.728425 CCTTTTTGGAGTACGTACGCC 59.272 52.381 33.70 33.70 45.04 5.68
1809 1977 3.006859 TCTCACACATGTCTCCATCGTTT 59.993 43.478 0.00 0.00 0.00 3.60
1821 1989 2.903784 TCCATCGTTTCTTCTTCAGGGA 59.096 45.455 0.00 0.00 0.00 4.20
1884 2052 1.298264 CTCGCTCTCTACGCTGCTG 60.298 63.158 0.00 0.00 0.00 4.41
1945 2113 4.907010 GTGATCTCTTCATCTACGTAAGCG 59.093 45.833 0.00 0.00 39.40 4.68
1965 2133 3.609409 GCGCCCTATCCGATTTCAAATTC 60.609 47.826 0.00 0.00 0.00 2.17
1966 2134 3.563808 CGCCCTATCCGATTTCAAATTCA 59.436 43.478 0.00 0.00 0.00 2.57
1991 2163 5.723492 TTGCTTGAATCGATGTATCTGTG 57.277 39.130 0.00 0.00 0.00 3.66
1999 2176 2.433970 TCGATGTATCTGTGGGAATGCA 59.566 45.455 0.00 0.00 0.00 3.96
2009 2186 0.251253 TGGGAATGCATGTGCTGACA 60.251 50.000 0.00 0.00 42.66 3.58
2021 2198 3.141398 TGTGCTGACAATTGGACTTCTC 58.859 45.455 10.83 0.00 0.00 2.87
2104 2281 0.379669 TCTACGCTTACTACAGCCGC 59.620 55.000 0.00 0.00 36.31 6.53
2152 2329 1.401931 CCGTTGCTTGCCTGATCAAAG 60.402 52.381 0.00 0.00 0.00 2.77
2193 2370 4.762251 CAGTTTTAGCTTGGCTAGAAAGGT 59.238 41.667 12.96 12.96 42.34 3.50
2211 2388 1.106944 GTTGGGTGTGGGGTTCTGTG 61.107 60.000 0.00 0.00 0.00 3.66
2230 2407 1.140852 TGGGAGAGAATTGTATGCCCG 59.859 52.381 5.31 0.00 36.89 6.13
2311 2488 6.538742 GCCTCTGTTTATATGTTGCTCAAGTA 59.461 38.462 0.00 0.00 0.00 2.24
2312 2489 7.227512 GCCTCTGTTTATATGTTGCTCAAGTAT 59.772 37.037 0.00 0.00 0.00 2.12
2407 2587 7.669304 TCTCCACACAAATATTTCAATTCTGGA 59.331 33.333 0.00 2.84 0.00 3.86
2455 2637 8.647226 GCAAAAGTTCGCTTCAAATATTTGTAT 58.353 29.630 23.95 0.22 39.18 2.29
2477 2659 9.781633 TGTATATTTTATACCACCACACCATAC 57.218 33.333 3.02 0.00 0.00 2.39
2485 2667 4.993028 ACCACCACACCATACTTTTATGT 58.007 39.130 0.00 0.00 34.27 2.29
2529 2711 2.289820 GGGAGTGAAGAAAAACGACCAC 59.710 50.000 0.00 0.00 0.00 4.16
2531 2713 3.247886 GGAGTGAAGAAAAACGACCACTC 59.752 47.826 0.00 0.00 37.62 3.51
2600 2785 7.906160 ACGTAAGAACATATACAAGCACATTC 58.094 34.615 0.00 0.00 43.62 2.67
2616 2801 9.334693 CAAGCACATTCTTTTAGTTTCTATGAC 57.665 33.333 0.00 0.00 0.00 3.06
2648 2833 9.806203 ATTACAAACCTAAAAACACAACCTAAC 57.194 29.630 0.00 0.00 0.00 2.34
2651 2836 8.968969 ACAAACCTAAAAACACAACCTAACATA 58.031 29.630 0.00 0.00 0.00 2.29
2700 2885 6.485984 TGTTGTCTTGCAATTTTAATGCCAAT 59.514 30.769 0.00 0.00 43.16 3.16
2704 2889 7.861372 TGTCTTGCAATTTTAATGCCAATTTTG 59.139 29.630 0.00 0.00 43.16 2.44
2725 2910 4.720046 TGGGACAACACAAAACTATAGCA 58.280 39.130 0.00 0.00 31.92 3.49
2726 2911 5.133941 TGGGACAACACAAAACTATAGCAA 58.866 37.500 0.00 0.00 31.92 3.91
2727 2912 5.772672 TGGGACAACACAAAACTATAGCAAT 59.227 36.000 0.00 0.00 31.92 3.56
2728 2913 6.266558 TGGGACAACACAAAACTATAGCAATT 59.733 34.615 0.00 0.00 31.92 2.32
2729 2914 7.151976 GGGACAACACAAAACTATAGCAATTT 58.848 34.615 0.00 0.00 0.00 1.82
2730 2915 7.655732 GGGACAACACAAAACTATAGCAATTTT 59.344 33.333 0.00 0.00 0.00 1.82
2731 2916 9.040939 GGACAACACAAAACTATAGCAATTTTT 57.959 29.630 0.00 0.00 0.00 1.94
2752 2937 6.522625 TTTTCTTCCAGTGAACATTTGTGA 57.477 33.333 0.00 0.00 0.00 3.58
2753 2938 5.756195 TTCTTCCAGTGAACATTTGTGAG 57.244 39.130 0.00 0.00 0.00 3.51
2754 2939 5.034852 TCTTCCAGTGAACATTTGTGAGA 57.965 39.130 0.00 0.00 0.00 3.27
2755 2940 5.624159 TCTTCCAGTGAACATTTGTGAGAT 58.376 37.500 0.00 0.00 0.00 2.75
2756 2941 5.702670 TCTTCCAGTGAACATTTGTGAGATC 59.297 40.000 0.00 0.00 0.00 2.75
2757 2942 4.326826 TCCAGTGAACATTTGTGAGATCC 58.673 43.478 0.00 0.00 0.00 3.36
2758 2943 4.074259 CCAGTGAACATTTGTGAGATCCA 58.926 43.478 0.00 0.00 0.00 3.41
2759 2944 4.155462 CCAGTGAACATTTGTGAGATCCAG 59.845 45.833 0.00 0.00 0.00 3.86
2760 2945 4.999311 CAGTGAACATTTGTGAGATCCAGA 59.001 41.667 0.00 0.00 0.00 3.86
2761 2946 5.471116 CAGTGAACATTTGTGAGATCCAGAA 59.529 40.000 0.00 0.00 0.00 3.02
2762 2947 6.016860 CAGTGAACATTTGTGAGATCCAGAAA 60.017 38.462 8.30 8.30 41.42 2.52
2763 2948 6.547141 AGTGAACATTTGTGAGATCCAGAAAA 59.453 34.615 9.46 3.79 40.70 2.29
2764 2949 7.232127 AGTGAACATTTGTGAGATCCAGAAAAT 59.768 33.333 9.46 5.39 40.70 1.82
2765 2950 7.869429 GTGAACATTTGTGAGATCCAGAAAATT 59.131 33.333 9.46 7.81 40.70 1.82
2766 2951 8.423349 TGAACATTTGTGAGATCCAGAAAATTT 58.577 29.630 9.46 6.72 40.70 1.82
2767 2952 8.597662 AACATTTGTGAGATCCAGAAAATTTG 57.402 30.769 9.46 7.16 40.70 2.32
2768 2953 6.647895 ACATTTGTGAGATCCAGAAAATTTGC 59.352 34.615 9.46 0.00 40.70 3.68
2769 2954 4.789012 TGTGAGATCCAGAAAATTTGCC 57.211 40.909 0.00 0.00 0.00 4.52
2770 2955 3.511146 TGTGAGATCCAGAAAATTTGCCC 59.489 43.478 0.00 0.00 0.00 5.36
2771 2956 3.099141 TGAGATCCAGAAAATTTGCCCC 58.901 45.455 0.00 0.00 0.00 5.80
2772 2957 3.245730 TGAGATCCAGAAAATTTGCCCCT 60.246 43.478 0.00 0.00 0.00 4.79
2773 2958 3.369175 AGATCCAGAAAATTTGCCCCTC 58.631 45.455 0.00 0.00 0.00 4.30
2774 2959 2.999185 TCCAGAAAATTTGCCCCTCT 57.001 45.000 0.00 0.00 0.00 3.69
2775 2960 2.807676 TCCAGAAAATTTGCCCCTCTC 58.192 47.619 0.00 0.00 0.00 3.20
2776 2961 2.109834 TCCAGAAAATTTGCCCCTCTCA 59.890 45.455 0.00 0.00 0.00 3.27
2777 2962 3.102204 CCAGAAAATTTGCCCCTCTCAT 58.898 45.455 0.00 0.00 0.00 2.90
2778 2963 3.131755 CCAGAAAATTTGCCCCTCTCATC 59.868 47.826 0.00 0.00 0.00 2.92
2779 2964 3.765511 CAGAAAATTTGCCCCTCTCATCA 59.234 43.478 0.00 0.00 0.00 3.07
2780 2965 4.404715 CAGAAAATTTGCCCCTCTCATCAT 59.595 41.667 0.00 0.00 0.00 2.45
2781 2966 4.648307 AGAAAATTTGCCCCTCTCATCATC 59.352 41.667 0.00 0.00 0.00 2.92
2782 2967 3.967467 AATTTGCCCCTCTCATCATCT 57.033 42.857 0.00 0.00 0.00 2.90
2783 2968 3.967467 ATTTGCCCCTCTCATCATCTT 57.033 42.857 0.00 0.00 0.00 2.40
2784 2969 2.723322 TTGCCCCTCTCATCATCTTG 57.277 50.000 0.00 0.00 0.00 3.02
2785 2970 0.841961 TGCCCCTCTCATCATCTTGG 59.158 55.000 0.00 0.00 0.00 3.61
2786 2971 0.536915 GCCCCTCTCATCATCTTGGC 60.537 60.000 0.00 0.00 0.00 4.52
2787 2972 0.250209 CCCCTCTCATCATCTTGGCG 60.250 60.000 0.00 0.00 0.00 5.69
2788 2973 0.755079 CCCTCTCATCATCTTGGCGA 59.245 55.000 0.00 0.00 0.00 5.54
2789 2974 1.270199 CCCTCTCATCATCTTGGCGAG 60.270 57.143 0.00 0.00 0.00 5.03
2790 2975 1.270199 CCTCTCATCATCTTGGCGAGG 60.270 57.143 0.97 0.00 32.42 4.63
2791 2976 1.685517 CTCTCATCATCTTGGCGAGGA 59.314 52.381 0.97 0.00 36.79 3.71
2792 2977 2.299582 CTCTCATCATCTTGGCGAGGAT 59.700 50.000 0.97 0.00 43.46 3.24
2793 2978 2.702478 TCTCATCATCTTGGCGAGGATT 59.298 45.455 0.97 0.00 40.00 3.01
2794 2979 3.065655 CTCATCATCTTGGCGAGGATTC 58.934 50.000 0.97 0.00 40.00 2.52
2795 2980 2.435437 TCATCATCTTGGCGAGGATTCA 59.565 45.455 0.97 0.00 40.00 2.57
2796 2981 3.072038 TCATCATCTTGGCGAGGATTCAT 59.928 43.478 0.97 0.00 40.00 2.57
2797 2982 4.284234 TCATCATCTTGGCGAGGATTCATA 59.716 41.667 0.97 0.00 40.00 2.15
2798 2983 4.263018 TCATCTTGGCGAGGATTCATAG 57.737 45.455 0.97 0.00 0.00 2.23
2799 2984 2.533266 TCTTGGCGAGGATTCATAGC 57.467 50.000 0.97 0.00 0.00 2.97
2800 2985 2.042464 TCTTGGCGAGGATTCATAGCT 58.958 47.619 0.97 0.00 0.00 3.32
2801 2986 2.435805 TCTTGGCGAGGATTCATAGCTT 59.564 45.455 0.97 0.00 0.00 3.74
2802 2987 2.245159 TGGCGAGGATTCATAGCTTG 57.755 50.000 0.00 0.00 0.00 4.01
2803 2988 1.202687 TGGCGAGGATTCATAGCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
2804 2989 1.517242 GCGAGGATTCATAGCTTGGG 58.483 55.000 0.00 0.00 0.00 4.12
2805 2990 1.517242 CGAGGATTCATAGCTTGGGC 58.483 55.000 0.00 0.00 39.06 5.36
2816 3001 3.786809 GCTTGGGCTCCGTAAAAAC 57.213 52.632 0.00 0.00 35.22 2.43
2817 3002 0.109919 GCTTGGGCTCCGTAAAAACG 60.110 55.000 0.00 0.00 35.22 3.60
2837 3022 5.019785 ACGGAGTTTTTAGTGTGAGAAGT 57.980 39.130 0.00 0.00 37.78 3.01
2838 3023 4.809426 ACGGAGTTTTTAGTGTGAGAAGTG 59.191 41.667 0.00 0.00 37.78 3.16
2839 3024 4.318831 CGGAGTTTTTAGTGTGAGAAGTGC 60.319 45.833 0.00 0.00 0.00 4.40
2840 3025 4.816925 GGAGTTTTTAGTGTGAGAAGTGCT 59.183 41.667 0.00 0.00 0.00 4.40
2841 3026 5.297029 GGAGTTTTTAGTGTGAGAAGTGCTT 59.703 40.000 0.00 0.00 0.00 3.91
2842 3027 6.482308 GGAGTTTTTAGTGTGAGAAGTGCTTA 59.518 38.462 0.00 0.00 0.00 3.09
2843 3028 7.173390 GGAGTTTTTAGTGTGAGAAGTGCTTAT 59.827 37.037 0.00 0.00 0.00 1.73
2844 3029 8.089115 AGTTTTTAGTGTGAGAAGTGCTTATC 57.911 34.615 0.09 0.09 0.00 1.75
2845 3030 6.706055 TTTTAGTGTGAGAAGTGCTTATCG 57.294 37.500 2.71 0.00 33.81 2.92
2846 3031 3.944055 AGTGTGAGAAGTGCTTATCGT 57.056 42.857 2.71 0.00 33.81 3.73
2847 3032 4.258702 AGTGTGAGAAGTGCTTATCGTT 57.741 40.909 2.71 0.00 33.81 3.85
2848 3033 4.632153 AGTGTGAGAAGTGCTTATCGTTT 58.368 39.130 2.71 0.00 33.81 3.60
2849 3034 4.449068 AGTGTGAGAAGTGCTTATCGTTTG 59.551 41.667 2.71 0.00 33.81 2.93
2850 3035 3.745975 TGTGAGAAGTGCTTATCGTTTGG 59.254 43.478 2.71 0.00 33.81 3.28
2851 3036 2.742053 TGAGAAGTGCTTATCGTTTGGC 59.258 45.455 2.71 0.00 33.81 4.52
2852 3037 3.003480 GAGAAGTGCTTATCGTTTGGCT 58.997 45.455 0.00 0.00 0.00 4.75
2853 3038 3.412386 AGAAGTGCTTATCGTTTGGCTT 58.588 40.909 0.00 0.00 0.00 4.35
2854 3039 3.821033 AGAAGTGCTTATCGTTTGGCTTT 59.179 39.130 0.00 0.00 0.00 3.51
2855 3040 3.559238 AGTGCTTATCGTTTGGCTTTG 57.441 42.857 0.00 0.00 0.00 2.77
2856 3041 2.228822 AGTGCTTATCGTTTGGCTTTGG 59.771 45.455 0.00 0.00 0.00 3.28
2857 3042 2.227865 GTGCTTATCGTTTGGCTTTGGA 59.772 45.455 0.00 0.00 0.00 3.53
2858 3043 3.088532 TGCTTATCGTTTGGCTTTGGAT 58.911 40.909 0.00 0.00 0.00 3.41
2859 3044 3.119531 TGCTTATCGTTTGGCTTTGGATG 60.120 43.478 0.00 0.00 0.00 3.51
2860 3045 3.128589 GCTTATCGTTTGGCTTTGGATGA 59.871 43.478 0.00 0.00 0.00 2.92
2861 3046 4.202050 GCTTATCGTTTGGCTTTGGATGAT 60.202 41.667 0.00 0.00 0.00 2.45
2862 3047 5.499139 TTATCGTTTGGCTTTGGATGATC 57.501 39.130 0.00 0.00 0.00 2.92
2863 3048 3.071874 TCGTTTGGCTTTGGATGATCT 57.928 42.857 0.00 0.00 0.00 2.75
2864 3049 4.214986 TCGTTTGGCTTTGGATGATCTA 57.785 40.909 0.00 0.00 0.00 1.98
2865 3050 3.938963 TCGTTTGGCTTTGGATGATCTAC 59.061 43.478 0.00 0.00 0.00 2.59
2866 3051 3.689161 CGTTTGGCTTTGGATGATCTACA 59.311 43.478 0.00 0.00 0.00 2.74
2867 3052 4.437390 CGTTTGGCTTTGGATGATCTACAC 60.437 45.833 0.00 0.00 0.00 2.90
2868 3053 3.998913 TGGCTTTGGATGATCTACACA 57.001 42.857 0.00 0.00 0.00 3.72
2869 3054 4.299586 TGGCTTTGGATGATCTACACAA 57.700 40.909 0.00 0.00 0.00 3.33
2870 3055 4.858850 TGGCTTTGGATGATCTACACAAT 58.141 39.130 0.00 0.00 0.00 2.71
2871 3056 4.641541 TGGCTTTGGATGATCTACACAATG 59.358 41.667 0.00 0.00 0.00 2.82
2872 3057 4.037208 GGCTTTGGATGATCTACACAATGG 59.963 45.833 0.00 0.00 0.00 3.16
2873 3058 4.037208 GCTTTGGATGATCTACACAATGGG 59.963 45.833 0.00 0.00 0.00 4.00
2874 3059 3.213206 TGGATGATCTACACAATGGGC 57.787 47.619 0.00 0.00 0.00 5.36
2875 3060 2.509131 TGGATGATCTACACAATGGGCA 59.491 45.455 0.00 0.00 0.00 5.36
2876 3061 3.053768 TGGATGATCTACACAATGGGCAA 60.054 43.478 0.00 0.00 0.00 4.52
2877 3062 3.953612 GGATGATCTACACAATGGGCAAA 59.046 43.478 0.00 0.00 0.00 3.68
2878 3063 4.586001 GGATGATCTACACAATGGGCAAAT 59.414 41.667 0.00 0.00 0.00 2.32
2879 3064 4.987408 TGATCTACACAATGGGCAAATG 57.013 40.909 0.00 0.00 0.00 2.32
2880 3065 4.598022 TGATCTACACAATGGGCAAATGA 58.402 39.130 0.00 0.00 0.00 2.57
2881 3066 4.398988 TGATCTACACAATGGGCAAATGAC 59.601 41.667 0.00 0.00 0.00 3.06
2882 3067 4.032960 TCTACACAATGGGCAAATGACT 57.967 40.909 0.00 0.00 0.00 3.41
2883 3068 5.172687 TCTACACAATGGGCAAATGACTA 57.827 39.130 0.00 0.00 0.00 2.59
2884 3069 4.941263 TCTACACAATGGGCAAATGACTAC 59.059 41.667 0.00 0.00 0.00 2.73
2885 3070 2.487762 ACACAATGGGCAAATGACTACG 59.512 45.455 0.00 0.00 0.00 3.51
2886 3071 2.487762 CACAATGGGCAAATGACTACGT 59.512 45.455 0.00 0.00 0.00 3.57
2887 3072 2.747446 ACAATGGGCAAATGACTACGTC 59.253 45.455 0.00 0.00 0.00 4.34
2888 3073 1.651987 ATGGGCAAATGACTACGTCG 58.348 50.000 0.00 0.00 34.95 5.12
2889 3074 0.604073 TGGGCAAATGACTACGTCGA 59.396 50.000 0.00 0.00 34.95 4.20
2890 3075 1.278238 GGGCAAATGACTACGTCGAG 58.722 55.000 0.00 0.00 34.95 4.04
2891 3076 1.403780 GGGCAAATGACTACGTCGAGT 60.404 52.381 0.00 0.00 34.95 4.18
2892 3077 1.918609 GGCAAATGACTACGTCGAGTC 59.081 52.381 10.89 10.89 45.19 3.36
2896 3081 4.647491 GACTACGTCGAGTCGCTG 57.353 61.111 7.92 4.92 36.76 5.18
2897 3082 1.580639 GACTACGTCGAGTCGCTGC 60.581 63.158 7.92 0.00 36.76 5.25
2898 3083 2.277373 CTACGTCGAGTCGCTGCC 60.277 66.667 7.92 0.00 0.00 4.85
2899 3084 3.736482 CTACGTCGAGTCGCTGCCC 62.736 68.421 7.92 0.00 0.00 5.36
2905 3090 4.899239 GAGTCGCTGCCCCGATGG 62.899 72.222 0.00 0.00 39.67 3.51
2925 3110 4.821589 GTCGCGAGGGCTGGAAGG 62.822 72.222 10.24 0.00 36.88 3.46
2934 3119 2.190578 GCTGGAAGGCGCTATGGT 59.809 61.111 7.64 0.00 0.00 3.55
2935 3120 1.889573 GCTGGAAGGCGCTATGGTC 60.890 63.158 7.64 0.00 0.00 4.02
2936 3121 1.522092 CTGGAAGGCGCTATGGTCA 59.478 57.895 7.64 0.00 0.00 4.02
2937 3122 0.107703 CTGGAAGGCGCTATGGTCAA 60.108 55.000 7.64 0.00 0.00 3.18
2938 3123 0.107703 TGGAAGGCGCTATGGTCAAG 60.108 55.000 7.64 0.00 0.00 3.02
2939 3124 0.107654 GGAAGGCGCTATGGTCAAGT 60.108 55.000 7.64 0.00 0.00 3.16
2940 3125 1.291132 GAAGGCGCTATGGTCAAGTC 58.709 55.000 7.64 0.00 0.00 3.01
2941 3126 0.460284 AAGGCGCTATGGTCAAGTCG 60.460 55.000 7.64 0.00 0.00 4.18
2942 3127 1.883084 GGCGCTATGGTCAAGTCGG 60.883 63.158 7.64 0.00 0.00 4.79
2943 3128 1.883084 GCGCTATGGTCAAGTCGGG 60.883 63.158 0.00 0.00 0.00 5.14
2944 3129 1.883084 CGCTATGGTCAAGTCGGGC 60.883 63.158 0.00 0.00 0.00 6.13
2945 3130 1.220749 GCTATGGTCAAGTCGGGCA 59.779 57.895 0.00 0.00 0.00 5.36
2946 3131 1.090052 GCTATGGTCAAGTCGGGCAC 61.090 60.000 0.00 0.00 0.00 5.01
2961 3146 3.354131 GCACCGCCAAAAGTTTGAA 57.646 47.368 5.34 0.00 40.55 2.69
2962 3147 1.864565 GCACCGCCAAAAGTTTGAAT 58.135 45.000 5.34 0.00 40.55 2.57
2963 3148 1.526464 GCACCGCCAAAAGTTTGAATG 59.474 47.619 5.34 0.20 40.55 2.67
2964 3149 2.134346 CACCGCCAAAAGTTTGAATGG 58.866 47.619 5.34 6.40 40.55 3.16
2965 3150 2.035632 ACCGCCAAAAGTTTGAATGGA 58.964 42.857 8.69 0.00 40.55 3.41
2966 3151 2.223947 ACCGCCAAAAGTTTGAATGGAC 60.224 45.455 8.69 0.73 40.55 4.02
2967 3152 2.223923 CCGCCAAAAGTTTGAATGGACA 60.224 45.455 8.69 0.00 40.55 4.02
2968 3153 2.794350 CGCCAAAAGTTTGAATGGACAC 59.206 45.455 8.69 0.00 40.55 3.67
2969 3154 3.490761 CGCCAAAAGTTTGAATGGACACT 60.491 43.478 8.69 0.00 40.55 3.55
2970 3155 4.051237 GCCAAAAGTTTGAATGGACACTC 58.949 43.478 8.69 0.00 40.55 3.51
2971 3156 4.620982 CCAAAAGTTTGAATGGACACTCC 58.379 43.478 5.34 0.00 40.55 3.85
2972 3157 4.501400 CCAAAAGTTTGAATGGACACTCCC 60.501 45.833 5.34 0.00 40.55 4.30
2973 3158 3.884037 AAGTTTGAATGGACACTCCCT 57.116 42.857 0.00 0.00 35.03 4.20
2974 3159 3.146104 AGTTTGAATGGACACTCCCTG 57.854 47.619 0.00 0.00 35.03 4.45
2975 3160 2.711009 AGTTTGAATGGACACTCCCTGA 59.289 45.455 0.00 0.00 35.03 3.86
2976 3161 3.331889 AGTTTGAATGGACACTCCCTGAT 59.668 43.478 0.00 0.00 35.03 2.90
2977 3162 3.354948 TTGAATGGACACTCCCTGATG 57.645 47.619 0.00 0.00 35.03 3.07
2978 3163 2.269023 TGAATGGACACTCCCTGATGT 58.731 47.619 0.00 0.00 35.03 3.06
2979 3164 3.449918 TGAATGGACACTCCCTGATGTA 58.550 45.455 0.00 0.00 35.03 2.29
2980 3165 3.197766 TGAATGGACACTCCCTGATGTAC 59.802 47.826 0.00 0.00 35.03 2.90
2981 3166 1.568504 TGGACACTCCCTGATGTACC 58.431 55.000 0.00 0.00 35.03 3.34
2982 3167 1.078823 TGGACACTCCCTGATGTACCT 59.921 52.381 0.00 0.00 35.03 3.08
2983 3168 2.188817 GGACACTCCCTGATGTACCTT 58.811 52.381 0.00 0.00 0.00 3.50
2984 3169 2.168728 GGACACTCCCTGATGTACCTTC 59.831 54.545 0.00 0.00 0.00 3.46
2985 3170 2.832129 GACACTCCCTGATGTACCTTCA 59.168 50.000 0.00 0.00 0.00 3.02
2986 3171 3.248024 ACACTCCCTGATGTACCTTCAA 58.752 45.455 0.00 0.00 0.00 2.69
2987 3172 3.846588 ACACTCCCTGATGTACCTTCAAT 59.153 43.478 0.00 0.00 0.00 2.57
2988 3173 4.080863 ACACTCCCTGATGTACCTTCAATC 60.081 45.833 0.00 0.00 0.00 2.67
2989 3174 4.080919 CACTCCCTGATGTACCTTCAATCA 60.081 45.833 0.00 0.00 0.00 2.57
2990 3175 4.536090 ACTCCCTGATGTACCTTCAATCAA 59.464 41.667 0.00 0.00 0.00 2.57
2991 3176 5.102953 TCCCTGATGTACCTTCAATCAAG 57.897 43.478 0.00 0.00 0.00 3.02
2992 3177 4.536090 TCCCTGATGTACCTTCAATCAAGT 59.464 41.667 0.00 0.00 0.00 3.16
2993 3178 4.878397 CCCTGATGTACCTTCAATCAAGTC 59.122 45.833 0.00 0.00 0.00 3.01
2994 3179 5.491070 CCTGATGTACCTTCAATCAAGTCA 58.509 41.667 0.00 0.00 0.00 3.41
2995 3180 5.939883 CCTGATGTACCTTCAATCAAGTCAA 59.060 40.000 0.00 0.00 0.00 3.18
2996 3181 6.128172 CCTGATGTACCTTCAATCAAGTCAAC 60.128 42.308 0.00 0.00 0.00 3.18
2997 3182 6.295249 TGATGTACCTTCAATCAAGTCAACA 58.705 36.000 0.00 0.00 0.00 3.33
2998 3183 6.427853 TGATGTACCTTCAATCAAGTCAACAG 59.572 38.462 0.00 0.00 0.00 3.16
2999 3184 5.063204 TGTACCTTCAATCAAGTCAACAGG 58.937 41.667 0.00 0.00 0.00 4.00
3000 3185 4.437682 ACCTTCAATCAAGTCAACAGGA 57.562 40.909 0.00 0.00 0.00 3.86
3026 3211 2.704464 TGGTTCATCCAGCTGATCTG 57.296 50.000 17.39 9.47 41.93 2.90
3027 3212 1.911357 TGGTTCATCCAGCTGATCTGT 59.089 47.619 17.39 0.00 41.93 3.41
3028 3213 2.286872 GGTTCATCCAGCTGATCTGTG 58.713 52.381 17.39 6.37 41.25 3.66
3029 3214 2.093288 GGTTCATCCAGCTGATCTGTGA 60.093 50.000 17.39 8.67 41.25 3.58
3030 3215 3.603532 GTTCATCCAGCTGATCTGTGAA 58.396 45.455 17.39 13.92 41.25 3.18
3031 3216 3.986996 TCATCCAGCTGATCTGTGAAA 57.013 42.857 17.39 0.00 41.25 2.69
3032 3217 4.498894 TCATCCAGCTGATCTGTGAAAT 57.501 40.909 17.39 0.00 41.25 2.17
3033 3218 4.851843 TCATCCAGCTGATCTGTGAAATT 58.148 39.130 17.39 0.00 41.25 1.82
3034 3219 4.638865 TCATCCAGCTGATCTGTGAAATTG 59.361 41.667 17.39 0.00 41.25 2.32
3035 3220 4.290711 TCCAGCTGATCTGTGAAATTGA 57.709 40.909 17.39 0.00 41.25 2.57
3036 3221 4.005650 TCCAGCTGATCTGTGAAATTGAC 58.994 43.478 17.39 0.00 41.25 3.18
3037 3222 3.181513 CCAGCTGATCTGTGAAATTGACG 60.182 47.826 17.39 0.00 41.25 4.35
3038 3223 3.681417 CAGCTGATCTGTGAAATTGACGA 59.319 43.478 8.42 0.00 38.02 4.20
3039 3224 3.931468 AGCTGATCTGTGAAATTGACGAG 59.069 43.478 1.27 0.00 0.00 4.18
3040 3225 3.484886 GCTGATCTGTGAAATTGACGAGC 60.485 47.826 1.27 0.00 0.00 5.03
3041 3226 3.002791 TGATCTGTGAAATTGACGAGCC 58.997 45.455 0.00 0.00 0.00 4.70
3042 3227 2.542020 TCTGTGAAATTGACGAGCCA 57.458 45.000 0.00 0.00 0.00 4.75
3043 3228 2.416747 TCTGTGAAATTGACGAGCCAG 58.583 47.619 0.00 0.00 0.00 4.85
3044 3229 0.874390 TGTGAAATTGACGAGCCAGC 59.126 50.000 0.00 0.00 0.00 4.85
3045 3230 1.160137 GTGAAATTGACGAGCCAGCT 58.840 50.000 0.00 0.00 0.00 4.24
3046 3231 1.129437 GTGAAATTGACGAGCCAGCTC 59.871 52.381 9.67 9.67 39.55 4.09
3055 3240 1.515304 GAGCCAGCTCGAGTTCGAC 60.515 63.158 15.13 0.00 44.22 4.20
3056 3241 1.928706 GAGCCAGCTCGAGTTCGACT 61.929 60.000 15.13 4.62 44.22 4.18
3057 3242 1.803519 GCCAGCTCGAGTTCGACTG 60.804 63.158 15.13 11.75 44.22 3.51
3058 3243 1.803519 CCAGCTCGAGTTCGACTGC 60.804 63.158 15.13 14.37 44.22 4.40
3059 3244 1.211449 CAGCTCGAGTTCGACTGCT 59.789 57.895 15.13 11.14 46.26 4.24
3060 3245 1.211449 AGCTCGAGTTCGACTGCTG 59.789 57.895 15.13 1.46 44.52 4.41
3061 3246 1.210413 GCTCGAGTTCGACTGCTGA 59.790 57.895 15.13 0.00 44.22 4.26
3062 3247 0.179150 GCTCGAGTTCGACTGCTGAT 60.179 55.000 15.13 0.00 44.22 2.90
3063 3248 1.543614 CTCGAGTTCGACTGCTGATG 58.456 55.000 3.62 0.00 44.22 3.07
3064 3249 0.456824 TCGAGTTCGACTGCTGATGC 60.457 55.000 0.00 0.00 44.22 3.91
3065 3250 0.457509 CGAGTTCGACTGCTGATGCT 60.458 55.000 0.00 0.00 43.02 3.79
3066 3251 1.719600 GAGTTCGACTGCTGATGCTT 58.280 50.000 0.00 0.00 40.48 3.91
3067 3252 1.392853 GAGTTCGACTGCTGATGCTTG 59.607 52.381 0.00 0.00 40.48 4.01
3068 3253 0.445436 GTTCGACTGCTGATGCTTGG 59.555 55.000 0.00 0.00 40.48 3.61
3069 3254 0.321346 TTCGACTGCTGATGCTTGGA 59.679 50.000 0.00 0.00 40.48 3.53
3070 3255 0.108472 TCGACTGCTGATGCTTGGAG 60.108 55.000 0.00 0.00 40.48 3.86
3071 3256 0.108472 CGACTGCTGATGCTTGGAGA 60.108 55.000 0.00 0.00 40.48 3.71
3072 3257 1.673923 CGACTGCTGATGCTTGGAGAA 60.674 52.381 0.00 0.00 40.48 2.87
3073 3258 2.641305 GACTGCTGATGCTTGGAGAAT 58.359 47.619 0.00 0.00 40.48 2.40
3074 3259 3.015327 GACTGCTGATGCTTGGAGAATT 58.985 45.455 0.00 0.00 40.48 2.17
3075 3260 3.428532 ACTGCTGATGCTTGGAGAATTT 58.571 40.909 0.00 0.00 40.48 1.82
3076 3261 3.192844 ACTGCTGATGCTTGGAGAATTTG 59.807 43.478 0.00 0.00 40.48 2.32
3077 3262 2.494471 TGCTGATGCTTGGAGAATTTGG 59.506 45.455 0.00 0.00 40.48 3.28
3078 3263 2.494870 GCTGATGCTTGGAGAATTTGGT 59.505 45.455 0.00 0.00 36.03 3.67
3079 3264 3.696051 GCTGATGCTTGGAGAATTTGGTA 59.304 43.478 0.00 0.00 36.03 3.25
3080 3265 4.340381 GCTGATGCTTGGAGAATTTGGTAT 59.660 41.667 0.00 0.00 36.03 2.73
3081 3266 5.735354 GCTGATGCTTGGAGAATTTGGTATG 60.735 44.000 0.00 0.00 36.03 2.39
3082 3267 5.263599 TGATGCTTGGAGAATTTGGTATGT 58.736 37.500 0.00 0.00 0.00 2.29
3083 3268 5.716228 TGATGCTTGGAGAATTTGGTATGTT 59.284 36.000 0.00 0.00 0.00 2.71
3084 3269 6.211184 TGATGCTTGGAGAATTTGGTATGTTT 59.789 34.615 0.00 0.00 0.00 2.83
3085 3270 6.418057 TGCTTGGAGAATTTGGTATGTTTT 57.582 33.333 0.00 0.00 0.00 2.43
3086 3271 6.825610 TGCTTGGAGAATTTGGTATGTTTTT 58.174 32.000 0.00 0.00 0.00 1.94
3107 3292 6.712241 TTTTGTTTGTTTTGCGAAATGAGA 57.288 29.167 1.61 0.00 0.00 3.27
3108 3293 6.712241 TTTGTTTGTTTTGCGAAATGAGAA 57.288 29.167 1.61 0.00 0.00 2.87
3109 3294 6.900568 TTGTTTGTTTTGCGAAATGAGAAT 57.099 29.167 1.61 0.00 0.00 2.40
3110 3295 6.900568 TGTTTGTTTTGCGAAATGAGAATT 57.099 29.167 1.61 0.00 0.00 2.17
3111 3296 7.301068 TGTTTGTTTTGCGAAATGAGAATTT 57.699 28.000 1.61 0.00 0.00 1.82
3112 3297 7.178741 TGTTTGTTTTGCGAAATGAGAATTTG 58.821 30.769 1.61 0.00 0.00 2.32
3113 3298 5.903764 TGTTTTGCGAAATGAGAATTTGG 57.096 34.783 1.61 0.00 0.00 3.28
3114 3299 5.355596 TGTTTTGCGAAATGAGAATTTGGT 58.644 33.333 1.61 0.00 0.00 3.67
3115 3300 6.507900 TGTTTTGCGAAATGAGAATTTGGTA 58.492 32.000 1.61 0.00 0.00 3.25
3116 3301 6.419413 TGTTTTGCGAAATGAGAATTTGGTAC 59.581 34.615 1.61 0.00 0.00 3.34
3117 3302 4.335082 TGCGAAATGAGAATTTGGTACG 57.665 40.909 0.00 0.00 0.00 3.67
3118 3303 3.749088 TGCGAAATGAGAATTTGGTACGT 59.251 39.130 0.00 0.00 0.00 3.57
3119 3304 4.214545 TGCGAAATGAGAATTTGGTACGTT 59.785 37.500 0.00 0.00 0.00 3.99
3120 3305 5.408909 TGCGAAATGAGAATTTGGTACGTTA 59.591 36.000 0.00 0.00 0.00 3.18
3121 3306 5.957796 GCGAAATGAGAATTTGGTACGTTAG 59.042 40.000 0.00 0.00 0.00 2.34
3122 3307 5.957796 CGAAATGAGAATTTGGTACGTTAGC 59.042 40.000 0.00 0.00 0.00 3.09
3123 3308 6.401688 CGAAATGAGAATTTGGTACGTTAGCA 60.402 38.462 0.00 0.00 0.00 3.49
3124 3309 6.811253 AATGAGAATTTGGTACGTTAGCAA 57.189 33.333 0.00 0.00 43.62 3.91
3125 3310 7.391148 AATGAGAATTTGGTACGTTAGCAAT 57.609 32.000 0.00 0.00 44.53 3.56
3126 3311 6.176975 TGAGAATTTGGTACGTTAGCAATG 57.823 37.500 0.00 0.00 44.53 2.82
3127 3312 5.935206 TGAGAATTTGGTACGTTAGCAATGA 59.065 36.000 0.00 0.00 44.53 2.57
3128 3313 6.597672 TGAGAATTTGGTACGTTAGCAATGAT 59.402 34.615 0.00 0.00 44.53 2.45
3129 3314 6.785191 AGAATTTGGTACGTTAGCAATGATG 58.215 36.000 0.00 0.00 44.53 3.07
3143 3328 3.349927 CAATGATGCTTGGAGAGGTTCA 58.650 45.455 0.00 0.00 0.00 3.18
3144 3329 3.726557 ATGATGCTTGGAGAGGTTCAA 57.273 42.857 0.00 0.00 0.00 2.69
3145 3330 3.063510 TGATGCTTGGAGAGGTTCAAG 57.936 47.619 0.00 0.00 42.19 3.02
3146 3331 2.639347 TGATGCTTGGAGAGGTTCAAGA 59.361 45.455 7.18 0.00 41.94 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.677836 CGCTAGTTTGCCAGAATAAGCA 59.322 45.455 0.00 0.00 37.18 3.91
380 382 0.251564 TTGGCCGTCATTTGACCCAT 60.252 50.000 0.00 0.00 41.86 4.00
480 483 5.601313 GTCCAGGTAGTTGATAGGTTGGATA 59.399 44.000 0.00 0.00 36.05 2.59
485 488 2.167900 GCGTCCAGGTAGTTGATAGGTT 59.832 50.000 0.00 0.00 0.00 3.50
522 525 3.267916 TGGTGTCCAGGTAGGGTTT 57.732 52.632 0.00 0.00 38.24 3.27
560 576 2.599082 CAGACTATCGTTTTCTGCGGTC 59.401 50.000 0.00 0.00 30.90 4.79
642 777 6.801539 TTTTGTCAACTAGCTCATTACTGG 57.198 37.500 0.00 0.00 0.00 4.00
791 928 1.300697 GCGCCTATGGAACGGTAGG 60.301 63.158 0.00 0.00 40.73 3.18
794 931 2.510064 TTTCGCGCCTATGGAACGGT 62.510 55.000 0.00 0.00 0.00 4.83
816 954 4.885325 GGAACCGGCCTCTTCATTTATTTA 59.115 41.667 0.00 0.00 0.00 1.40
817 955 3.699538 GGAACCGGCCTCTTCATTTATTT 59.300 43.478 0.00 0.00 0.00 1.40
818 956 3.288092 GGAACCGGCCTCTTCATTTATT 58.712 45.455 0.00 0.00 0.00 1.40
932 1070 1.340017 TGCCTCCTCAGCAATGTAACC 60.340 52.381 0.00 0.00 37.28 2.85
939 1081 2.210013 ACGTCTGCCTCCTCAGCAA 61.210 57.895 0.00 0.00 40.35 3.91
1044 1192 1.581447 GAAGAGGTTGCCGGCAAAG 59.419 57.895 41.60 0.00 37.70 2.77
1080 1228 6.354794 TGTATATATGCTTACACTGGGGAC 57.645 41.667 2.37 0.00 0.00 4.46
1110 1261 3.868200 AAGGGGGCGAGGCAAACAG 62.868 63.158 0.00 0.00 0.00 3.16
1113 1264 2.937959 AAACAAGGGGGCGAGGCAAA 62.938 55.000 0.00 0.00 0.00 3.68
1115 1266 3.444818 AAAACAAGGGGGCGAGGCA 62.445 57.895 0.00 0.00 0.00 4.75
1117 1268 0.611896 ATCAAAACAAGGGGGCGAGG 60.612 55.000 0.00 0.00 0.00 4.63
1118 1269 0.811281 GATCAAAACAAGGGGGCGAG 59.189 55.000 0.00 0.00 0.00 5.03
1122 1273 2.234414 CACCATGATCAAAACAAGGGGG 59.766 50.000 0.00 0.00 31.49 5.40
1123 1274 2.234414 CCACCATGATCAAAACAAGGGG 59.766 50.000 0.00 0.00 31.49 4.79
1124 1275 3.164268 TCCACCATGATCAAAACAAGGG 58.836 45.455 0.00 0.00 31.49 3.95
1125 1276 4.081406 TCTCCACCATGATCAAAACAAGG 58.919 43.478 0.00 0.00 33.16 3.61
1126 1277 5.005740 TCTCTCCACCATGATCAAAACAAG 58.994 41.667 0.00 0.00 0.00 3.16
1130 1281 3.588842 ACCTCTCTCCACCATGATCAAAA 59.411 43.478 0.00 0.00 0.00 2.44
1140 1291 1.067495 CGTCAGAAACCTCTCTCCACC 60.067 57.143 0.00 0.00 0.00 4.61
1165 1316 3.795877 CCTGAAAAGGCAACAACACAAT 58.204 40.909 0.00 0.00 41.41 2.71
1207 1367 1.376037 CTCCGTGGACTTGGCCTTC 60.376 63.158 3.32 0.00 0.00 3.46
1434 1595 5.163311 TGGAGTGTTTCTGAGATGAAAGTGA 60.163 40.000 0.00 0.00 36.72 3.41
1447 1608 0.841289 TTCCCCGTTGGAGTGTTTCT 59.159 50.000 0.00 0.00 46.24 2.52
1454 1620 0.666374 GTTGTTGTTCCCCGTTGGAG 59.334 55.000 0.00 0.00 46.24 3.86
1483 1649 6.440647 TGGATAACAGAGTTCAGTACAGGAAT 59.559 38.462 0.00 0.00 0.00 3.01
1497 1664 5.102953 TGTGGAGGAAATGGATAACAGAG 57.897 43.478 0.00 0.00 0.00 3.35
1651 1819 2.125952 GCGGGGAAGCAAACATGC 60.126 61.111 0.00 0.00 37.05 4.06
1667 1835 2.890474 CGTACCATGACGGCCAGC 60.890 66.667 2.24 0.00 39.19 4.85
1688 1856 3.706373 GAGCCCAGGTTGAGCGGA 61.706 66.667 0.00 0.00 0.00 5.54
1692 1860 0.179936 GATGAGGAGCCCAGGTTGAG 59.820 60.000 0.00 0.00 0.00 3.02
1697 1865 2.449137 ATTTTGATGAGGAGCCCAGG 57.551 50.000 0.00 0.00 0.00 4.45
1737 1905 2.522836 TGGCGTACGTACTCCAAAAA 57.477 45.000 30.10 11.13 38.06 1.94
1769 1937 2.866762 GAGAACAGTTCCATGATACGCC 59.133 50.000 9.85 0.00 0.00 5.68
1774 1942 4.356405 TGTGTGAGAACAGTTCCATGAT 57.644 40.909 9.85 0.00 0.00 2.45
1775 1943 3.836365 TGTGTGAGAACAGTTCCATGA 57.164 42.857 9.85 0.00 0.00 3.07
1809 1977 2.398754 TCACCACTCCCTGAAGAAGA 57.601 50.000 0.00 0.00 0.00 2.87
1821 1989 0.251832 ACTCCGTCCTGATCACCACT 60.252 55.000 0.00 0.00 0.00 4.00
1904 2072 2.520039 CGCAGCAGCACTCCGTATG 61.520 63.158 0.82 0.00 42.27 2.39
1945 2113 5.514274 TTGAATTTGAAATCGGATAGGGC 57.486 39.130 0.00 0.00 0.00 5.19
1965 2133 7.165318 CACAGATACATCGATTCAAGCAAATTG 59.835 37.037 0.00 0.00 40.52 2.32
1966 2134 7.191551 CACAGATACATCGATTCAAGCAAATT 58.808 34.615 0.00 0.00 0.00 1.82
1971 2143 3.496130 CCCACAGATACATCGATTCAAGC 59.504 47.826 0.00 0.00 0.00 4.01
1991 2163 0.889994 TTGTCAGCACATGCATTCCC 59.110 50.000 6.64 0.00 45.16 3.97
1999 2176 3.755378 GAGAAGTCCAATTGTCAGCACAT 59.245 43.478 4.43 0.00 30.55 3.21
2009 2186 0.608640 AGACGGCGAGAAGTCCAATT 59.391 50.000 16.62 0.00 38.08 2.32
2104 2281 3.879295 ACGTATCCTTGCATCTCCATTTG 59.121 43.478 0.00 0.00 0.00 2.32
2152 2329 5.876612 AACTGAGAATTGATCACTTGAGC 57.123 39.130 2.61 0.00 0.00 4.26
2193 2370 1.228793 CACAGAACCCCACACCCAA 59.771 57.895 0.00 0.00 0.00 4.12
2211 2388 1.543429 CCGGGCATACAATTCTCTCCC 60.543 57.143 0.00 0.00 0.00 4.30
2230 2407 0.408309 AACTAGGGAAAACAGGGCCC 59.592 55.000 16.46 16.46 42.37 5.80
2358 2538 6.211384 AGAAACATTTCATAACAAAGGGGGAG 59.789 38.462 7.10 0.00 39.61 4.30
2426 2606 7.656707 AATATTTGAAGCGAACTTTTGCAAT 57.343 28.000 0.00 0.00 40.10 3.56
2428 2608 6.478344 ACAAATATTTGAAGCGAACTTTTGCA 59.522 30.769 30.18 0.00 40.55 4.08
2455 2637 9.756571 AAAAGTATGGTGTGGTGGTATAAAATA 57.243 29.630 0.00 0.00 0.00 1.40
2501 2683 6.817140 GTCGTTTTTCTTCACTCCCTATGTAT 59.183 38.462 0.00 0.00 0.00 2.29
2505 2687 4.041198 TGGTCGTTTTTCTTCACTCCCTAT 59.959 41.667 0.00 0.00 0.00 2.57
2510 2692 3.060473 CGAGTGGTCGTTTTTCTTCACTC 60.060 47.826 10.23 10.23 44.25 3.51
2513 2695 2.206750 CCGAGTGGTCGTTTTTCTTCA 58.793 47.619 0.00 0.00 45.30 3.02
2514 2696 2.943843 CCGAGTGGTCGTTTTTCTTC 57.056 50.000 0.00 0.00 45.30 2.87
2529 2711 7.047850 GAGATAGCTCACCACTCATACCGAG 62.048 52.000 2.36 0.00 43.10 4.63
2531 2713 2.887783 AGATAGCTCACCACTCATACCG 59.112 50.000 0.00 0.00 0.00 4.02
2574 2756 8.936070 AATGTGCTTGTATATGTTCTTACGTA 57.064 30.769 0.00 0.00 0.00 3.57
2593 2778 7.519002 ACGTCATAGAAACTAAAAGAATGTGC 58.481 34.615 0.00 0.00 0.00 4.57
2672 2857 7.148188 TGGCATTAAAATTGCAAGACAACAAAA 60.148 29.630 4.94 0.00 42.27 2.44
2700 2885 6.096987 TGCTATAGTTTTGTGTTGTCCCAAAA 59.903 34.615 0.84 0.00 38.00 2.44
2704 2889 5.699097 TTGCTATAGTTTTGTGTTGTCCC 57.301 39.130 0.84 0.00 0.00 4.46
2728 2913 6.929625 TCACAAATGTTCACTGGAAGAAAAA 58.070 32.000 0.00 0.00 37.43 1.94
2729 2914 6.376864 TCTCACAAATGTTCACTGGAAGAAAA 59.623 34.615 0.00 0.00 37.43 2.29
2730 2915 5.885352 TCTCACAAATGTTCACTGGAAGAAA 59.115 36.000 0.00 0.00 37.43 2.52
2731 2916 5.436175 TCTCACAAATGTTCACTGGAAGAA 58.564 37.500 0.00 0.00 37.43 2.52
2732 2917 5.034852 TCTCACAAATGTTCACTGGAAGA 57.965 39.130 0.00 0.00 37.43 2.87
2733 2918 5.106396 GGATCTCACAAATGTTCACTGGAAG 60.106 44.000 0.00 0.00 42.29 3.46
2734 2919 4.761739 GGATCTCACAAATGTTCACTGGAA 59.238 41.667 0.00 0.00 0.00 3.53
2735 2920 4.202451 TGGATCTCACAAATGTTCACTGGA 60.202 41.667 0.00 0.00 0.00 3.86
2736 2921 4.074259 TGGATCTCACAAATGTTCACTGG 58.926 43.478 0.00 0.00 0.00 4.00
2737 2922 4.999311 TCTGGATCTCACAAATGTTCACTG 59.001 41.667 0.00 0.00 0.00 3.66
2738 2923 5.233083 TCTGGATCTCACAAATGTTCACT 57.767 39.130 0.00 0.00 0.00 3.41
2739 2924 5.947228 TTCTGGATCTCACAAATGTTCAC 57.053 39.130 0.00 0.00 0.00 3.18
2740 2925 6.957920 TTTTCTGGATCTCACAAATGTTCA 57.042 33.333 0.00 0.00 0.00 3.18
2741 2926 8.706035 CAAATTTTCTGGATCTCACAAATGTTC 58.294 33.333 0.00 0.00 0.00 3.18
2742 2927 7.172019 GCAAATTTTCTGGATCTCACAAATGTT 59.828 33.333 0.00 0.00 0.00 2.71
2743 2928 6.647895 GCAAATTTTCTGGATCTCACAAATGT 59.352 34.615 0.00 0.00 0.00 2.71
2744 2929 6.091713 GGCAAATTTTCTGGATCTCACAAATG 59.908 38.462 0.00 0.00 0.00 2.32
2745 2930 6.168389 GGCAAATTTTCTGGATCTCACAAAT 58.832 36.000 0.00 0.00 0.00 2.32
2746 2931 5.511202 GGGCAAATTTTCTGGATCTCACAAA 60.511 40.000 0.00 0.00 0.00 2.83
2747 2932 4.021192 GGGCAAATTTTCTGGATCTCACAA 60.021 41.667 0.00 0.00 0.00 3.33
2748 2933 3.511146 GGGCAAATTTTCTGGATCTCACA 59.489 43.478 0.00 0.00 0.00 3.58
2749 2934 3.118992 GGGGCAAATTTTCTGGATCTCAC 60.119 47.826 0.00 0.00 0.00 3.51
2750 2935 3.099141 GGGGCAAATTTTCTGGATCTCA 58.901 45.455 0.00 0.00 0.00 3.27
2751 2936 3.369175 AGGGGCAAATTTTCTGGATCTC 58.631 45.455 0.00 0.00 0.00 2.75
2752 2937 3.012161 AGAGGGGCAAATTTTCTGGATCT 59.988 43.478 0.00 0.00 0.00 2.75
2753 2938 3.369175 AGAGGGGCAAATTTTCTGGATC 58.631 45.455 0.00 0.00 0.00 3.36
2754 2939 3.245730 TGAGAGGGGCAAATTTTCTGGAT 60.246 43.478 0.00 0.00 0.00 3.41
2755 2940 2.109834 TGAGAGGGGCAAATTTTCTGGA 59.890 45.455 0.00 0.00 0.00 3.86
2756 2941 2.528564 TGAGAGGGGCAAATTTTCTGG 58.471 47.619 0.00 0.00 0.00 3.86
2757 2942 3.765511 TGATGAGAGGGGCAAATTTTCTG 59.234 43.478 0.00 0.00 0.00 3.02
2758 2943 4.051661 TGATGAGAGGGGCAAATTTTCT 57.948 40.909 0.00 0.00 0.00 2.52
2759 2944 4.648307 AGATGATGAGAGGGGCAAATTTTC 59.352 41.667 0.00 0.00 0.00 2.29
2760 2945 4.617593 AGATGATGAGAGGGGCAAATTTT 58.382 39.130 0.00 0.00 0.00 1.82
2761 2946 4.261411 AGATGATGAGAGGGGCAAATTT 57.739 40.909 0.00 0.00 0.00 1.82
2762 2947 3.958798 CAAGATGATGAGAGGGGCAAATT 59.041 43.478 0.00 0.00 0.00 1.82
2763 2948 3.563223 CAAGATGATGAGAGGGGCAAAT 58.437 45.455 0.00 0.00 0.00 2.32
2764 2949 2.357465 CCAAGATGATGAGAGGGGCAAA 60.357 50.000 0.00 0.00 0.00 3.68
2765 2950 1.213678 CCAAGATGATGAGAGGGGCAA 59.786 52.381 0.00 0.00 0.00 4.52
2766 2951 0.841961 CCAAGATGATGAGAGGGGCA 59.158 55.000 0.00 0.00 0.00 5.36
2767 2952 0.536915 GCCAAGATGATGAGAGGGGC 60.537 60.000 0.00 0.00 0.00 5.80
2768 2953 0.250209 CGCCAAGATGATGAGAGGGG 60.250 60.000 0.00 0.00 0.00 4.79
2769 2954 0.755079 TCGCCAAGATGATGAGAGGG 59.245 55.000 0.00 0.00 0.00 4.30
2770 2955 1.270199 CCTCGCCAAGATGATGAGAGG 60.270 57.143 0.00 0.00 38.08 3.69
2771 2956 1.685517 TCCTCGCCAAGATGATGAGAG 59.314 52.381 0.00 0.00 0.00 3.20
2772 2957 1.780503 TCCTCGCCAAGATGATGAGA 58.219 50.000 0.00 0.00 0.00 3.27
2773 2958 2.835580 ATCCTCGCCAAGATGATGAG 57.164 50.000 0.00 0.00 33.77 2.90
2774 2959 2.435437 TGAATCCTCGCCAAGATGATGA 59.565 45.455 0.00 0.00 34.98 2.92
2775 2960 2.842457 TGAATCCTCGCCAAGATGATG 58.158 47.619 0.00 0.00 34.98 3.07
2776 2961 3.784511 ATGAATCCTCGCCAAGATGAT 57.215 42.857 0.00 0.00 36.05 2.45
2777 2962 3.555795 GCTATGAATCCTCGCCAAGATGA 60.556 47.826 0.00 0.00 0.00 2.92
2778 2963 2.740981 GCTATGAATCCTCGCCAAGATG 59.259 50.000 0.00 0.00 0.00 2.90
2779 2964 2.636893 AGCTATGAATCCTCGCCAAGAT 59.363 45.455 0.00 0.00 0.00 2.40
2780 2965 2.042464 AGCTATGAATCCTCGCCAAGA 58.958 47.619 0.00 0.00 0.00 3.02
2781 2966 2.540265 AGCTATGAATCCTCGCCAAG 57.460 50.000 0.00 0.00 0.00 3.61
2782 2967 2.564771 CAAGCTATGAATCCTCGCCAA 58.435 47.619 0.00 0.00 0.00 4.52
2783 2968 1.202687 CCAAGCTATGAATCCTCGCCA 60.203 52.381 0.00 0.00 0.00 5.69
2784 2969 1.517242 CCAAGCTATGAATCCTCGCC 58.483 55.000 0.00 0.00 0.00 5.54
2785 2970 1.517242 CCCAAGCTATGAATCCTCGC 58.483 55.000 0.00 0.00 0.00 5.03
2786 2971 1.517242 GCCCAAGCTATGAATCCTCG 58.483 55.000 0.00 0.00 35.50 4.63
2798 2983 0.109919 CGTTTTTACGGAGCCCAAGC 60.110 55.000 0.00 0.00 40.32 4.01
2812 2997 6.373495 ACTTCTCACACTAAAAACTCCGTTTT 59.627 34.615 0.00 0.00 45.94 2.43
2813 2998 5.878669 ACTTCTCACACTAAAAACTCCGTTT 59.121 36.000 0.00 0.00 37.34 3.60
2814 2999 5.293569 CACTTCTCACACTAAAAACTCCGTT 59.706 40.000 0.00 0.00 0.00 4.44
2815 3000 4.809426 CACTTCTCACACTAAAAACTCCGT 59.191 41.667 0.00 0.00 0.00 4.69
2816 3001 4.318831 GCACTTCTCACACTAAAAACTCCG 60.319 45.833 0.00 0.00 0.00 4.63
2817 3002 4.816925 AGCACTTCTCACACTAAAAACTCC 59.183 41.667 0.00 0.00 0.00 3.85
2818 3003 5.993106 AGCACTTCTCACACTAAAAACTC 57.007 39.130 0.00 0.00 0.00 3.01
2819 3004 7.095607 CGATAAGCACTTCTCACACTAAAAACT 60.096 37.037 0.00 0.00 0.00 2.66
2820 3005 7.010023 CGATAAGCACTTCTCACACTAAAAAC 58.990 38.462 0.00 0.00 0.00 2.43
2821 3006 6.704493 ACGATAAGCACTTCTCACACTAAAAA 59.296 34.615 0.00 0.00 0.00 1.94
2822 3007 6.220930 ACGATAAGCACTTCTCACACTAAAA 58.779 36.000 0.00 0.00 0.00 1.52
2823 3008 5.779922 ACGATAAGCACTTCTCACACTAAA 58.220 37.500 0.00 0.00 0.00 1.85
2824 3009 5.386958 ACGATAAGCACTTCTCACACTAA 57.613 39.130 0.00 0.00 0.00 2.24
2825 3010 5.386958 AACGATAAGCACTTCTCACACTA 57.613 39.130 0.00 0.00 0.00 2.74
2826 3011 3.944055 ACGATAAGCACTTCTCACACT 57.056 42.857 0.00 0.00 0.00 3.55
2827 3012 4.377431 CCAAACGATAAGCACTTCTCACAC 60.377 45.833 0.00 0.00 0.00 3.82
2828 3013 3.745975 CCAAACGATAAGCACTTCTCACA 59.254 43.478 0.00 0.00 0.00 3.58
2829 3014 3.424962 GCCAAACGATAAGCACTTCTCAC 60.425 47.826 0.00 0.00 0.00 3.51
2830 3015 2.742053 GCCAAACGATAAGCACTTCTCA 59.258 45.455 0.00 0.00 0.00 3.27
2831 3016 3.003480 AGCCAAACGATAAGCACTTCTC 58.997 45.455 0.00 0.00 0.00 2.87
2832 3017 3.059352 AGCCAAACGATAAGCACTTCT 57.941 42.857 0.00 0.00 0.00 2.85
2833 3018 3.831715 AAGCCAAACGATAAGCACTTC 57.168 42.857 0.00 0.00 0.00 3.01
2834 3019 3.305335 CCAAAGCCAAACGATAAGCACTT 60.305 43.478 0.00 0.00 0.00 3.16
2835 3020 2.228822 CCAAAGCCAAACGATAAGCACT 59.771 45.455 0.00 0.00 0.00 4.40
2836 3021 2.227865 TCCAAAGCCAAACGATAAGCAC 59.772 45.455 0.00 0.00 0.00 4.40
2837 3022 2.509569 TCCAAAGCCAAACGATAAGCA 58.490 42.857 0.00 0.00 0.00 3.91
2838 3023 3.128589 TCATCCAAAGCCAAACGATAAGC 59.871 43.478 0.00 0.00 0.00 3.09
2839 3024 4.963276 TCATCCAAAGCCAAACGATAAG 57.037 40.909 0.00 0.00 0.00 1.73
2840 3025 5.192927 AGATCATCCAAAGCCAAACGATAA 58.807 37.500 0.00 0.00 0.00 1.75
2841 3026 4.780815 AGATCATCCAAAGCCAAACGATA 58.219 39.130 0.00 0.00 0.00 2.92
2842 3027 3.624777 AGATCATCCAAAGCCAAACGAT 58.375 40.909 0.00 0.00 0.00 3.73
2843 3028 3.071874 AGATCATCCAAAGCCAAACGA 57.928 42.857 0.00 0.00 0.00 3.85
2844 3029 3.689161 TGTAGATCATCCAAAGCCAAACG 59.311 43.478 0.00 0.00 0.00 3.60
2845 3030 4.458989 TGTGTAGATCATCCAAAGCCAAAC 59.541 41.667 0.00 0.00 0.00 2.93
2846 3031 4.661222 TGTGTAGATCATCCAAAGCCAAA 58.339 39.130 0.00 0.00 0.00 3.28
2847 3032 4.299586 TGTGTAGATCATCCAAAGCCAA 57.700 40.909 0.00 0.00 0.00 4.52
2848 3033 3.998913 TGTGTAGATCATCCAAAGCCA 57.001 42.857 0.00 0.00 0.00 4.75
2849 3034 4.037208 CCATTGTGTAGATCATCCAAAGCC 59.963 45.833 0.00 0.00 0.00 4.35
2850 3035 4.037208 CCCATTGTGTAGATCATCCAAAGC 59.963 45.833 0.00 0.00 0.00 3.51
2851 3036 4.037208 GCCCATTGTGTAGATCATCCAAAG 59.963 45.833 0.00 0.00 0.00 2.77
2852 3037 3.953612 GCCCATTGTGTAGATCATCCAAA 59.046 43.478 0.00 0.00 0.00 3.28
2853 3038 3.053768 TGCCCATTGTGTAGATCATCCAA 60.054 43.478 0.00 0.00 0.00 3.53
2854 3039 2.509131 TGCCCATTGTGTAGATCATCCA 59.491 45.455 0.00 0.00 0.00 3.41
2855 3040 3.213206 TGCCCATTGTGTAGATCATCC 57.787 47.619 0.00 0.00 0.00 3.51
2856 3041 5.300034 TCATTTGCCCATTGTGTAGATCATC 59.700 40.000 0.00 0.00 0.00 2.92
2857 3042 5.068198 GTCATTTGCCCATTGTGTAGATCAT 59.932 40.000 0.00 0.00 0.00 2.45
2858 3043 4.398988 GTCATTTGCCCATTGTGTAGATCA 59.601 41.667 0.00 0.00 0.00 2.92
2859 3044 4.641989 AGTCATTTGCCCATTGTGTAGATC 59.358 41.667 0.00 0.00 0.00 2.75
2860 3045 4.603131 AGTCATTTGCCCATTGTGTAGAT 58.397 39.130 0.00 0.00 0.00 1.98
2861 3046 4.032960 AGTCATTTGCCCATTGTGTAGA 57.967 40.909 0.00 0.00 0.00 2.59
2862 3047 4.201812 CGTAGTCATTTGCCCATTGTGTAG 60.202 45.833 0.00 0.00 0.00 2.74
2863 3048 3.687212 CGTAGTCATTTGCCCATTGTGTA 59.313 43.478 0.00 0.00 0.00 2.90
2864 3049 2.487762 CGTAGTCATTTGCCCATTGTGT 59.512 45.455 0.00 0.00 0.00 3.72
2865 3050 2.487762 ACGTAGTCATTTGCCCATTGTG 59.512 45.455 0.00 0.00 29.74 3.33
2866 3051 2.790433 ACGTAGTCATTTGCCCATTGT 58.210 42.857 0.00 0.00 29.74 2.71
2881 3066 2.277373 GGCAGCGACTCGACGTAG 60.277 66.667 1.63 0.00 35.59 3.51
2882 3067 3.807538 GGGCAGCGACTCGACGTA 61.808 66.667 1.63 0.00 35.59 3.57
2888 3073 4.899239 CCATCGGGGCAGCGACTC 62.899 72.222 0.00 0.00 0.00 3.36
2908 3093 4.821589 CCTTCCAGCCCTCGCGAC 62.822 72.222 3.71 0.00 41.18 5.19
2913 3098 2.812619 ATAGCGCCTTCCAGCCCTC 61.813 63.158 2.29 0.00 0.00 4.30
2914 3099 2.770048 ATAGCGCCTTCCAGCCCT 60.770 61.111 2.29 0.00 0.00 5.19
2915 3100 2.592861 CATAGCGCCTTCCAGCCC 60.593 66.667 2.29 0.00 0.00 5.19
2916 3101 2.592861 CCATAGCGCCTTCCAGCC 60.593 66.667 2.29 0.00 0.00 4.85
2917 3102 1.889573 GACCATAGCGCCTTCCAGC 60.890 63.158 2.29 0.00 0.00 4.85
2918 3103 0.107703 TTGACCATAGCGCCTTCCAG 60.108 55.000 2.29 0.00 0.00 3.86
2919 3104 0.107703 CTTGACCATAGCGCCTTCCA 60.108 55.000 2.29 0.00 0.00 3.53
2920 3105 0.107654 ACTTGACCATAGCGCCTTCC 60.108 55.000 2.29 0.00 0.00 3.46
2921 3106 1.291132 GACTTGACCATAGCGCCTTC 58.709 55.000 2.29 0.00 0.00 3.46
2922 3107 0.460284 CGACTTGACCATAGCGCCTT 60.460 55.000 2.29 0.00 0.00 4.35
2923 3108 1.141881 CGACTTGACCATAGCGCCT 59.858 57.895 2.29 0.00 0.00 5.52
2924 3109 1.883084 CCGACTTGACCATAGCGCC 60.883 63.158 2.29 0.00 0.00 6.53
2925 3110 1.883084 CCCGACTTGACCATAGCGC 60.883 63.158 0.00 0.00 0.00 5.92
2926 3111 1.883084 GCCCGACTTGACCATAGCG 60.883 63.158 0.00 0.00 0.00 4.26
2927 3112 1.090052 GTGCCCGACTTGACCATAGC 61.090 60.000 0.00 0.00 0.00 2.97
2928 3113 0.462047 GGTGCCCGACTTGACCATAG 60.462 60.000 0.00 0.00 0.00 2.23
2929 3114 1.600107 GGTGCCCGACTTGACCATA 59.400 57.895 0.00 0.00 0.00 2.74
2930 3115 2.351276 GGTGCCCGACTTGACCAT 59.649 61.111 0.00 0.00 0.00 3.55
2943 3128 1.526464 CATTCAAACTTTTGGCGGTGC 59.474 47.619 1.94 0.00 38.66 5.01
2944 3129 2.134346 CCATTCAAACTTTTGGCGGTG 58.866 47.619 1.94 0.00 38.66 4.94
2945 3130 2.035632 TCCATTCAAACTTTTGGCGGT 58.964 42.857 1.94 0.00 38.66 5.68
2946 3131 2.223923 TGTCCATTCAAACTTTTGGCGG 60.224 45.455 1.94 1.35 38.66 6.13
2947 3132 2.794350 GTGTCCATTCAAACTTTTGGCG 59.206 45.455 1.94 0.00 38.66 5.69
2948 3133 4.051237 GAGTGTCCATTCAAACTTTTGGC 58.949 43.478 1.94 0.00 38.66 4.52
2949 3134 4.501400 GGGAGTGTCCATTCAAACTTTTGG 60.501 45.833 1.94 0.00 38.64 3.28
2950 3135 4.342092 AGGGAGTGTCCATTCAAACTTTTG 59.658 41.667 0.00 0.00 38.64 2.44
2951 3136 4.342092 CAGGGAGTGTCCATTCAAACTTTT 59.658 41.667 0.00 0.00 38.64 2.27
2952 3137 3.891366 CAGGGAGTGTCCATTCAAACTTT 59.109 43.478 0.00 0.00 38.64 2.66
2953 3138 3.138283 TCAGGGAGTGTCCATTCAAACTT 59.862 43.478 0.00 0.00 38.64 2.66
2954 3139 2.711009 TCAGGGAGTGTCCATTCAAACT 59.289 45.455 0.00 0.00 38.64 2.66
2955 3140 3.140325 TCAGGGAGTGTCCATTCAAAC 57.860 47.619 0.00 0.00 38.64 2.93
2956 3141 3.074390 ACATCAGGGAGTGTCCATTCAAA 59.926 43.478 0.00 0.00 38.64 2.69
2957 3142 2.644299 ACATCAGGGAGTGTCCATTCAA 59.356 45.455 0.00 0.00 38.64 2.69
2958 3143 2.269023 ACATCAGGGAGTGTCCATTCA 58.731 47.619 0.00 0.00 38.64 2.57
2959 3144 3.432326 GGTACATCAGGGAGTGTCCATTC 60.432 52.174 0.00 0.00 38.64 2.67
2960 3145 2.505819 GGTACATCAGGGAGTGTCCATT 59.494 50.000 0.00 0.00 38.64 3.16
2961 3146 2.119495 GGTACATCAGGGAGTGTCCAT 58.881 52.381 0.00 0.00 38.64 3.41
2962 3147 1.078823 AGGTACATCAGGGAGTGTCCA 59.921 52.381 0.00 0.00 38.64 4.02
2963 3148 1.867363 AGGTACATCAGGGAGTGTCC 58.133 55.000 0.00 0.00 35.23 4.02
2964 3149 2.832129 TGAAGGTACATCAGGGAGTGTC 59.168 50.000 0.00 0.00 30.39 3.67
2965 3150 2.902608 TGAAGGTACATCAGGGAGTGT 58.097 47.619 0.00 0.00 30.39 3.55
2966 3151 3.981071 TTGAAGGTACATCAGGGAGTG 57.019 47.619 0.00 0.00 37.36 3.51
2967 3152 4.104086 TGATTGAAGGTACATCAGGGAGT 58.896 43.478 0.00 0.00 37.36 3.85
2968 3153 4.760530 TGATTGAAGGTACATCAGGGAG 57.239 45.455 0.00 0.00 37.36 4.30
2969 3154 4.536090 ACTTGATTGAAGGTACATCAGGGA 59.464 41.667 7.04 0.00 37.36 4.20
2970 3155 4.848357 ACTTGATTGAAGGTACATCAGGG 58.152 43.478 7.04 2.38 37.36 4.45
2971 3156 5.491070 TGACTTGATTGAAGGTACATCAGG 58.509 41.667 0.00 0.00 37.36 3.86
2972 3157 6.427853 TGTTGACTTGATTGAAGGTACATCAG 59.572 38.462 0.00 0.00 37.36 2.90
2973 3158 6.295249 TGTTGACTTGATTGAAGGTACATCA 58.705 36.000 0.00 0.00 35.78 3.07
2974 3159 6.128172 CCTGTTGACTTGATTGAAGGTACATC 60.128 42.308 0.00 0.00 35.78 3.06
2975 3160 5.707298 CCTGTTGACTTGATTGAAGGTACAT 59.293 40.000 0.00 0.00 35.78 2.29
2976 3161 5.063204 CCTGTTGACTTGATTGAAGGTACA 58.937 41.667 0.00 0.00 35.78 2.90
2977 3162 5.179555 GTCCTGTTGACTTGATTGAAGGTAC 59.820 44.000 0.00 0.00 41.03 3.34
2978 3163 5.305585 GTCCTGTTGACTTGATTGAAGGTA 58.694 41.667 0.00 0.00 41.03 3.08
2979 3164 4.137543 GTCCTGTTGACTTGATTGAAGGT 58.862 43.478 0.00 0.00 41.03 3.50
2980 3165 3.503748 GGTCCTGTTGACTTGATTGAAGG 59.496 47.826 0.00 0.00 43.89 3.46
2981 3166 4.136796 TGGTCCTGTTGACTTGATTGAAG 58.863 43.478 0.00 0.00 43.89 3.02
2982 3167 4.136796 CTGGTCCTGTTGACTTGATTGAA 58.863 43.478 0.00 0.00 43.89 2.69
2983 3168 3.390967 TCTGGTCCTGTTGACTTGATTGA 59.609 43.478 0.00 0.00 43.89 2.57
2984 3169 3.743521 TCTGGTCCTGTTGACTTGATTG 58.256 45.455 0.00 0.00 43.89 2.67
2985 3170 4.647564 ATCTGGTCCTGTTGACTTGATT 57.352 40.909 0.00 0.00 43.89 2.57
2986 3171 4.330250 CAATCTGGTCCTGTTGACTTGAT 58.670 43.478 0.00 0.00 43.89 2.57
2987 3172 3.496692 CCAATCTGGTCCTGTTGACTTGA 60.497 47.826 10.54 0.00 43.89 3.02
2988 3173 2.816087 CCAATCTGGTCCTGTTGACTTG 59.184 50.000 10.54 0.00 43.89 3.16
2989 3174 3.146104 CCAATCTGGTCCTGTTGACTT 57.854 47.619 10.54 0.00 43.89 3.01
2990 3175 2.867109 CCAATCTGGTCCTGTTGACT 57.133 50.000 10.54 0.00 43.89 3.41
3017 3202 3.930336 TCGTCAATTTCACAGATCAGCT 58.070 40.909 0.00 0.00 0.00 4.24
3018 3203 3.484886 GCTCGTCAATTTCACAGATCAGC 60.485 47.826 0.00 0.00 0.00 4.26
3019 3204 3.063180 GGCTCGTCAATTTCACAGATCAG 59.937 47.826 0.00 0.00 0.00 2.90
3020 3205 3.002791 GGCTCGTCAATTTCACAGATCA 58.997 45.455 0.00 0.00 0.00 2.92
3021 3206 3.002791 TGGCTCGTCAATTTCACAGATC 58.997 45.455 0.00 0.00 0.00 2.75
3022 3207 3.005554 CTGGCTCGTCAATTTCACAGAT 58.994 45.455 0.00 0.00 0.00 2.90
3023 3208 2.416747 CTGGCTCGTCAATTTCACAGA 58.583 47.619 0.00 0.00 0.00 3.41
3024 3209 1.135859 GCTGGCTCGTCAATTTCACAG 60.136 52.381 0.00 0.00 0.00 3.66
3025 3210 0.874390 GCTGGCTCGTCAATTTCACA 59.126 50.000 0.00 0.00 0.00 3.58
3026 3211 1.129437 GAGCTGGCTCGTCAATTTCAC 59.871 52.381 6.84 0.00 33.06 3.18
3027 3212 1.442769 GAGCTGGCTCGTCAATTTCA 58.557 50.000 6.84 0.00 33.06 2.69
3037 3222 2.878429 TCGAACTCGAGCTGGCTC 59.122 61.111 13.61 12.09 44.22 4.70
3044 3229 2.381210 GCATCAGCAGTCGAACTCGAG 61.381 57.143 11.84 11.84 44.62 4.04
3045 3230 0.456824 GCATCAGCAGTCGAACTCGA 60.457 55.000 0.00 0.00 42.97 4.04
3046 3231 0.457509 AGCATCAGCAGTCGAACTCG 60.458 55.000 0.00 0.00 45.49 4.18
3047 3232 1.392853 CAAGCATCAGCAGTCGAACTC 59.607 52.381 0.00 0.00 45.49 3.01
3048 3233 1.436600 CAAGCATCAGCAGTCGAACT 58.563 50.000 0.00 0.00 45.49 3.01
3049 3234 0.445436 CCAAGCATCAGCAGTCGAAC 59.555 55.000 0.00 0.00 45.49 3.95
3050 3235 0.321346 TCCAAGCATCAGCAGTCGAA 59.679 50.000 0.00 0.00 45.49 3.71
3051 3236 0.108472 CTCCAAGCATCAGCAGTCGA 60.108 55.000 0.00 0.00 45.49 4.20
3052 3237 0.108472 TCTCCAAGCATCAGCAGTCG 60.108 55.000 0.00 0.00 45.49 4.18
3053 3238 2.105006 TTCTCCAAGCATCAGCAGTC 57.895 50.000 0.00 0.00 45.49 3.51
3054 3239 2.803030 ATTCTCCAAGCATCAGCAGT 57.197 45.000 0.00 0.00 45.49 4.40
3055 3240 3.428999 CCAAATTCTCCAAGCATCAGCAG 60.429 47.826 0.00 0.00 45.49 4.24
3056 3241 2.494471 CCAAATTCTCCAAGCATCAGCA 59.506 45.455 0.00 0.00 45.49 4.41
3057 3242 2.494870 ACCAAATTCTCCAAGCATCAGC 59.505 45.455 0.00 0.00 42.56 4.26
3058 3243 5.359009 ACATACCAAATTCTCCAAGCATCAG 59.641 40.000 0.00 0.00 0.00 2.90
3059 3244 5.263599 ACATACCAAATTCTCCAAGCATCA 58.736 37.500 0.00 0.00 0.00 3.07
3060 3245 5.841957 ACATACCAAATTCTCCAAGCATC 57.158 39.130 0.00 0.00 0.00 3.91
3061 3246 6.610075 AAACATACCAAATTCTCCAAGCAT 57.390 33.333 0.00 0.00 0.00 3.79
3062 3247 6.418057 AAAACATACCAAATTCTCCAAGCA 57.582 33.333 0.00 0.00 0.00 3.91
3083 3268 7.121974 TCTCATTTCGCAAAACAAACAAAAA 57.878 28.000 0.00 0.00 0.00 1.94
3084 3269 6.712241 TCTCATTTCGCAAAACAAACAAAA 57.288 29.167 0.00 0.00 0.00 2.44
3085 3270 6.712241 TTCTCATTTCGCAAAACAAACAAA 57.288 29.167 0.00 0.00 0.00 2.83
3086 3271 6.900568 ATTCTCATTTCGCAAAACAAACAA 57.099 29.167 0.00 0.00 0.00 2.83
3087 3272 6.900568 AATTCTCATTTCGCAAAACAAACA 57.099 29.167 0.00 0.00 0.00 2.83
3088 3273 6.628461 CCAAATTCTCATTTCGCAAAACAAAC 59.372 34.615 0.00 0.00 29.41 2.93
3089 3274 6.314896 ACCAAATTCTCATTTCGCAAAACAAA 59.685 30.769 0.00 0.00 29.41 2.83
3090 3275 5.814705 ACCAAATTCTCATTTCGCAAAACAA 59.185 32.000 0.00 0.00 29.41 2.83
3091 3276 5.355596 ACCAAATTCTCATTTCGCAAAACA 58.644 33.333 0.00 0.00 29.41 2.83
3092 3277 5.905480 ACCAAATTCTCATTTCGCAAAAC 57.095 34.783 0.00 0.00 29.41 2.43
3093 3278 5.627367 CGTACCAAATTCTCATTTCGCAAAA 59.373 36.000 0.00 0.00 29.41 2.44
3094 3279 5.150683 CGTACCAAATTCTCATTTCGCAAA 58.849 37.500 0.00 0.00 29.41 3.68
3095 3280 4.214545 ACGTACCAAATTCTCATTTCGCAA 59.785 37.500 0.00 0.00 29.41 4.85
3096 3281 3.749088 ACGTACCAAATTCTCATTTCGCA 59.251 39.130 0.00 0.00 29.41 5.10
3097 3282 4.336532 ACGTACCAAATTCTCATTTCGC 57.663 40.909 0.00 0.00 29.41 4.70
3098 3283 5.957796 GCTAACGTACCAAATTCTCATTTCG 59.042 40.000 0.00 0.00 29.41 3.46
3099 3284 6.837992 TGCTAACGTACCAAATTCTCATTTC 58.162 36.000 0.00 0.00 29.41 2.17
3100 3285 6.811253 TGCTAACGTACCAAATTCTCATTT 57.189 33.333 0.00 0.00 32.36 2.32
3101 3286 6.811253 TTGCTAACGTACCAAATTCTCATT 57.189 33.333 0.00 0.00 0.00 2.57
3102 3287 6.597672 TCATTGCTAACGTACCAAATTCTCAT 59.402 34.615 0.00 0.00 0.00 2.90
3103 3288 5.935206 TCATTGCTAACGTACCAAATTCTCA 59.065 36.000 0.00 0.00 0.00 3.27
3104 3289 6.417191 TCATTGCTAACGTACCAAATTCTC 57.583 37.500 0.00 0.00 0.00 2.87
3105 3290 6.677920 GCATCATTGCTAACGTACCAAATTCT 60.678 38.462 0.00 0.00 45.77 2.40
3106 3291 5.455525 GCATCATTGCTAACGTACCAAATTC 59.544 40.000 0.00 0.00 45.77 2.17
3107 3292 5.339990 GCATCATTGCTAACGTACCAAATT 58.660 37.500 0.00 0.00 45.77 1.82
3108 3293 4.920376 GCATCATTGCTAACGTACCAAAT 58.080 39.130 0.00 0.00 45.77 2.32
3109 3294 4.349663 GCATCATTGCTAACGTACCAAA 57.650 40.909 0.00 0.00 45.77 3.28
3122 3307 3.349927 TGAACCTCTCCAAGCATCATTG 58.650 45.455 0.00 0.00 0.00 2.82
3123 3308 3.726557 TGAACCTCTCCAAGCATCATT 57.273 42.857 0.00 0.00 0.00 2.57
3124 3309 3.265221 TCTTGAACCTCTCCAAGCATCAT 59.735 43.478 0.00 0.00 39.53 2.45
3125 3310 2.639347 TCTTGAACCTCTCCAAGCATCA 59.361 45.455 0.00 0.00 39.53 3.07
3126 3311 3.340814 TCTTGAACCTCTCCAAGCATC 57.659 47.619 0.00 0.00 39.53 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.