Multiple sequence alignment - TraesCS3D01G255600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G255600 chr3D 100.000 6477 0 0 1 6477 357153909 357147433 0.000000e+00 11961.0
1 TraesCS3D01G255600 chr3D 83.688 141 20 3 5016 5154 424015458 424015319 5.270000e-26 130.0
2 TraesCS3D01G255600 chr3D 82.517 143 22 3 5009 5149 113586118 113586259 8.820000e-24 122.0
3 TraesCS3D01G255600 chr3B 94.159 2962 138 25 1489 4425 458406686 458403735 0.000000e+00 4479.0
4 TraesCS3D01G255600 chr3B 91.912 1187 63 18 5301 6467 458400319 458399146 0.000000e+00 1629.0
5 TraesCS3D01G255600 chr3B 89.975 788 49 15 1 783 458408469 458407707 0.000000e+00 990.0
6 TraesCS3D01G255600 chr3B 92.576 660 28 9 845 1496 458407674 458407028 0.000000e+00 928.0
7 TraesCS3D01G255600 chr3B 90.698 301 14 2 4555 4841 458402634 458402334 7.880000e-104 388.0
8 TraesCS3D01G255600 chr3B 88.584 219 17 4 4837 5051 458400587 458400373 6.440000e-65 259.0
9 TraesCS3D01G255600 chr3B 93.220 59 3 1 5143 5200 458400372 458400314 1.160000e-12 86.1
10 TraesCS3D01G255600 chr3A 90.381 1206 89 14 1720 2904 476568195 476566996 0.000000e+00 1559.0
11 TraesCS3D01G255600 chr3A 89.517 1221 58 26 5311 6477 476565598 476564394 0.000000e+00 1482.0
12 TraesCS3D01G255600 chr3A 86.162 542 33 26 741 1262 476569296 476568777 1.230000e-151 547.0
13 TraesCS3D01G255600 chr3A 91.960 398 12 8 2968 3363 476566999 476566620 2.050000e-149 540.0
14 TraesCS3D01G255600 chr3A 89.737 380 39 0 1 380 476657550 476657171 2.710000e-133 486.0
15 TraesCS3D01G255600 chr3A 87.536 345 22 6 4555 4881 476566241 476565900 4.740000e-101 379.0
16 TraesCS3D01G255600 chr3A 88.087 277 19 5 3400 3676 476566623 476566361 3.770000e-82 316.0
17 TraesCS3D01G255600 chr3A 86.034 179 17 6 1462 1637 476568573 476568400 1.110000e-42 185.0
18 TraesCS3D01G255600 chr3A 84.127 126 9 6 4883 4997 476565861 476565736 1.910000e-20 111.0
19 TraesCS3D01G255600 chr3A 86.441 59 5 2 3482 3537 483931638 483931696 1.950000e-05 62.1
20 TraesCS3D01G255600 chr3A 87.273 55 3 3 3482 3534 213249567 213249619 7.010000e-05 60.2
21 TraesCS3D01G255600 chr1D 85.411 802 102 12 3759 4554 36532140 36531348 0.000000e+00 819.0
22 TraesCS3D01G255600 chr1D 82.565 803 131 7 3759 4554 4999785 5000585 0.000000e+00 699.0
23 TraesCS3D01G255600 chr1D 79.290 338 32 21 946 1253 2164639 2164968 1.100000e-47 202.0
24 TraesCS3D01G255600 chr1D 88.591 149 12 4 1504 1648 2165077 2165224 6.670000e-40 176.0
25 TraesCS3D01G255600 chr1D 84.571 175 27 0 1792 1966 450109616 450109442 2.400000e-39 174.0
26 TraesCS3D01G255600 chr1D 82.386 176 17 9 1717 1888 2165413 2165578 2.430000e-29 141.0
27 TraesCS3D01G255600 chr7D 82.235 895 136 18 3677 4554 625029205 625028317 0.000000e+00 750.0
28 TraesCS3D01G255600 chr7D 85.938 64 4 4 3486 3545 467763763 467763825 5.420000e-06 63.9
29 TraesCS3D01G255600 chr5B 81.818 891 142 17 3680 4554 419990356 419989470 0.000000e+00 730.0
30 TraesCS3D01G255600 chr5B 97.170 106 3 0 5198 5303 511839683 511839788 5.160000e-41 180.0
31 TraesCS3D01G255600 chr7B 85.154 714 100 5 3759 4467 604800413 604801125 0.000000e+00 726.0
32 TraesCS3D01G255600 chr7B 94.690 113 6 0 5191 5303 72777511 72777623 6.670000e-40 176.0
33 TraesCS3D01G255600 chr7B 82.390 159 19 6 4990 5145 37097266 37097114 5.270000e-26 130.0
34 TraesCS3D01G255600 chr7A 81.502 892 144 16 3678 4554 584396464 584395579 0.000000e+00 713.0
35 TraesCS3D01G255600 chr2D 80.782 895 150 15 3672 4554 530269551 530270435 0.000000e+00 680.0
36 TraesCS3D01G255600 chr4A 80.804 896 142 16 3673 4551 437496034 437496916 0.000000e+00 675.0
37 TraesCS3D01G255600 chr4A 83.688 141 14 8 5016 5150 491341635 491341498 2.450000e-24 124.0
38 TraesCS3D01G255600 chr6A 83.835 532 40 21 755 1262 614938290 614937781 1.270000e-126 464.0
39 TraesCS3D01G255600 chr6A 80.233 172 25 6 4990 5158 298461051 298461216 3.170000e-23 121.0
40 TraesCS3D01G255600 chr1B 80.352 341 33 15 930 1237 1514393 1514054 1.820000e-55 228.0
41 TraesCS3D01G255600 chr1B 84.302 172 27 0 1792 1963 616618285 616618114 1.120000e-37 169.0
42 TraesCS3D01G255600 chr1B 84.564 149 18 5 1504 1648 1513924 1513777 6.770000e-30 143.0
43 TraesCS3D01G255600 chr4B 98.113 106 2 0 5198 5303 79997161 79997266 1.110000e-42 185.0
44 TraesCS3D01G255600 chr4B 91.935 124 7 3 5198 5320 565865959 565865838 3.110000e-38 171.0
45 TraesCS3D01G255600 chrUn 95.575 113 4 1 5198 5310 27987517 27987406 5.160000e-41 180.0
46 TraesCS3D01G255600 chrUn 95.413 109 5 0 5198 5306 36601809 36601701 2.400000e-39 174.0
47 TraesCS3D01G255600 chrUn 95.413 109 5 0 5198 5306 269192263 269192155 2.400000e-39 174.0
48 TraesCS3D01G255600 chrUn 90.385 52 3 1 3485 3534 3663033 3662982 4.190000e-07 67.6
49 TraesCS3D01G255600 chr2B 94.690 113 6 0 5198 5310 781779054 781778942 6.670000e-40 176.0
50 TraesCS3D01G255600 chr2B 92.437 119 7 2 5198 5315 398998341 398998224 1.120000e-37 169.0
51 TraesCS3D01G255600 chr2B 81.928 166 23 4 4990 5154 590855786 590855627 4.070000e-27 134.0
52 TraesCS3D01G255600 chr1A 84.000 175 27 1 1789 1963 545333249 545333076 4.020000e-37 167.0
53 TraesCS3D01G255600 chr1A 84.286 140 18 4 5012 5149 530522779 530522642 4.070000e-27 134.0
54 TraesCS3D01G255600 chr1A 81.481 162 22 5 4990 5149 23901165 23901010 6.820000e-25 126.0
55 TraesCS3D01G255600 chr6B 83.929 168 20 4 4990 5155 15232351 15232513 3.130000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G255600 chr3D 357147433 357153909 6476 True 11961.000 11961 100.000000 1 6477 1 chr3D.!!$R1 6476
1 TraesCS3D01G255600 chr3B 458399146 458408469 9323 True 1251.300 4479 91.589143 1 6467 7 chr3B.!!$R1 6466
2 TraesCS3D01G255600 chr3A 476564394 476569296 4902 True 639.875 1559 87.975500 741 6477 8 chr3A.!!$R2 5736
3 TraesCS3D01G255600 chr1D 36531348 36532140 792 True 819.000 819 85.411000 3759 4554 1 chr1D.!!$R1 795
4 TraesCS3D01G255600 chr1D 4999785 5000585 800 False 699.000 699 82.565000 3759 4554 1 chr1D.!!$F1 795
5 TraesCS3D01G255600 chr7D 625028317 625029205 888 True 750.000 750 82.235000 3677 4554 1 chr7D.!!$R1 877
6 TraesCS3D01G255600 chr5B 419989470 419990356 886 True 730.000 730 81.818000 3680 4554 1 chr5B.!!$R1 874
7 TraesCS3D01G255600 chr7B 604800413 604801125 712 False 726.000 726 85.154000 3759 4467 1 chr7B.!!$F2 708
8 TraesCS3D01G255600 chr7A 584395579 584396464 885 True 713.000 713 81.502000 3678 4554 1 chr7A.!!$R1 876
9 TraesCS3D01G255600 chr2D 530269551 530270435 884 False 680.000 680 80.782000 3672 4554 1 chr2D.!!$F1 882
10 TraesCS3D01G255600 chr4A 437496034 437496916 882 False 675.000 675 80.804000 3673 4551 1 chr4A.!!$F1 878
11 TraesCS3D01G255600 chr6A 614937781 614938290 509 True 464.000 464 83.835000 755 1262 1 chr6A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 471 0.032952 TAGTCTGCGGCGAAACAAGT 59.967 50.000 12.98 0.00 0.00 3.16 F
1177 1241 0.251165 TGGGTTTCTACAGGCCAAGC 60.251 55.000 5.01 0.00 0.00 4.01 F
1319 1383 1.812571 GGAATGCAGAGCGGAAAAAGA 59.187 47.619 0.00 0.00 0.00 2.52 F
2048 2659 1.918467 CTCCTCTGGATTGCAGGCCA 61.918 60.000 5.01 9.01 0.00 5.36 F
2122 2733 2.998668 CATACGTCGATGGAAAGCAC 57.001 50.000 9.90 0.00 0.00 4.40 F
3785 4438 0.400213 ACAAGGATCAACCCGAAGCA 59.600 50.000 0.00 0.00 40.05 3.91 F
5210 8720 0.108615 CACCTGCTCCCTACGTTCTG 60.109 60.000 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2659 1.808945 CTGCTCTCTTTCCGTTTGCAT 59.191 47.619 0.00 0.0 0.00 3.96 R
3095 3726 0.963962 TCTGTCCGAACACACTACCC 59.036 55.000 0.00 0.0 0.00 3.69 R
3214 3847 2.358247 CAGGGGGTGGTTTCGACG 60.358 66.667 0.00 0.0 0.00 5.12 R
3444 4077 0.464036 CCTCTAGGCGGCATACACAA 59.536 55.000 13.08 0.0 0.00 3.33 R
3891 4547 1.772063 GCGGTGCACGTTATGGGATC 61.772 60.000 11.45 0.0 46.52 3.36 R
5289 8799 0.039911 ACTGAGCTACTCCCTCCGTT 59.960 55.000 0.00 0.0 0.00 4.44 R
6307 9872 1.605058 AAGCGTATGCCGTGGTCTCT 61.605 55.000 2.51 0.0 44.31 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.729965 CTGCCCCTACTGCTCTGCG 62.730 68.421 0.00 0.00 0.00 5.18
30 31 4.537433 CCCCTACTGCTCTGCGCC 62.537 72.222 4.18 0.00 38.05 6.53
45 46 2.435059 GCCAGTGCCCTTCGAGTC 60.435 66.667 0.00 0.00 0.00 3.36
46 47 3.059982 CCAGTGCCCTTCGAGTCA 58.940 61.111 0.00 0.00 0.00 3.41
52 53 1.118965 TGCCCTTCGAGTCACCTGAA 61.119 55.000 0.00 0.00 0.00 3.02
54 55 0.390472 CCCTTCGAGTCACCTGAAGC 60.390 60.000 1.81 0.00 38.19 3.86
61 62 0.250640 AGTCACCTGAAGCAGCCTTG 60.251 55.000 0.00 0.00 0.00 3.61
85 86 1.067582 GAGCGGGGTTCCTGATACG 59.932 63.158 0.00 0.00 29.82 3.06
107 108 2.633509 CCAGCTGAAAGGCACAGGC 61.634 63.158 17.39 0.00 36.09 4.85
115 116 2.738213 AAAGGCACAGGCTGTCGAGG 62.738 60.000 19.13 7.82 38.81 4.63
119 120 4.363990 ACAGGCTGTCGAGGTGCG 62.364 66.667 15.88 0.00 42.69 5.34
145 146 2.024319 GATGCGCCTATGCTCCGTC 61.024 63.158 4.18 0.00 35.36 4.79
202 203 0.817634 TGGTTGAGAAACTGGTGCCG 60.818 55.000 0.00 0.00 0.00 5.69
221 222 0.620556 GGAGGCCTTCTTCACCATGA 59.379 55.000 6.77 0.00 0.00 3.07
228 229 1.667724 CTTCTTCACCATGACGGCATC 59.332 52.381 0.00 0.00 39.03 3.91
245 246 1.080907 TCCCCTCTGGATGCTGACA 59.919 57.895 0.00 0.00 38.61 3.58
268 269 3.398406 TGACAGTGAATCGCTTTGCTTA 58.602 40.909 0.00 0.00 0.00 3.09
271 272 3.062639 ACAGTGAATCGCTTTGCTTATCG 59.937 43.478 0.00 0.00 0.00 2.92
272 273 3.062639 CAGTGAATCGCTTTGCTTATCGT 59.937 43.478 0.00 0.00 0.00 3.73
274 275 3.062099 GTGAATCGCTTTGCTTATCGTCA 59.938 43.478 0.00 0.00 0.00 4.35
277 278 1.067142 TCGCTTTGCTTATCGTCACCT 60.067 47.619 0.00 0.00 0.00 4.00
298 299 1.524008 CCGTTCCACTTTGCCCCTTC 61.524 60.000 0.00 0.00 0.00 3.46
320 321 1.222936 GGCATAGTGCTGCAGAGGT 59.777 57.895 20.43 2.27 44.28 3.85
323 324 0.529337 CATAGTGCTGCAGAGGTCGG 60.529 60.000 20.43 0.00 0.00 4.79
325 326 4.687215 GTGCTGCAGAGGTCGGCA 62.687 66.667 20.43 3.74 44.34 5.69
364 365 2.097825 GTCTCCCCGTTGTAGAAGCTA 58.902 52.381 0.00 0.00 0.00 3.32
386 387 2.464582 GGACTCCCCAGTTCCAAGT 58.535 57.895 0.00 0.00 30.63 3.16
387 388 0.036875 GGACTCCCCAGTTCCAAGTG 59.963 60.000 0.00 0.00 30.63 3.16
388 389 0.765510 GACTCCCCAGTTCCAAGTGT 59.234 55.000 0.00 0.00 30.63 3.55
389 390 1.143073 GACTCCCCAGTTCCAAGTGTT 59.857 52.381 0.00 0.00 30.63 3.32
390 391 2.370849 GACTCCCCAGTTCCAAGTGTTA 59.629 50.000 0.00 0.00 30.63 2.41
393 394 2.714250 TCCCCAGTTCCAAGTGTTACAT 59.286 45.455 0.00 0.00 0.00 2.29
404 405 5.071788 TCCAAGTGTTACATCCAGTTCTTCT 59.928 40.000 0.00 0.00 0.00 2.85
429 430 1.961277 GCAGTAGTGTGCGCCTGTT 60.961 57.895 4.18 0.00 32.74 3.16
431 432 0.880278 CAGTAGTGTGCGCCTGTTGT 60.880 55.000 4.18 0.00 0.00 3.32
439 440 1.725164 GTGCGCCTGTTGTTAGTAGAC 59.275 52.381 4.18 0.00 0.00 2.59
467 471 0.032952 TAGTCTGCGGCGAAACAAGT 59.967 50.000 12.98 0.00 0.00 3.16
509 513 1.993370 GTGACATGTTCCTCGTGTAGC 59.007 52.381 0.00 0.00 45.10 3.58
522 526 2.174210 TCGTGTAGCCCCTCATAGTACT 59.826 50.000 0.00 0.00 0.00 2.73
523 527 2.293677 CGTGTAGCCCCTCATAGTACTG 59.706 54.545 5.39 0.00 0.00 2.74
524 528 2.036089 GTGTAGCCCCTCATAGTACTGC 59.964 54.545 5.39 0.00 0.00 4.40
525 529 2.091278 TGTAGCCCCTCATAGTACTGCT 60.091 50.000 5.39 6.25 0.00 4.24
526 530 3.139584 TGTAGCCCCTCATAGTACTGCTA 59.860 47.826 5.39 5.20 0.00 3.49
527 531 2.883026 AGCCCCTCATAGTACTGCTAG 58.117 52.381 5.39 0.00 32.45 3.42
539 543 5.041191 AGTACTGCTAGGCAATAAAGCAT 57.959 39.130 0.00 0.00 44.69 3.79
552 556 9.236006 AGGCAATAAAGCATATATCGAGATTTT 57.764 29.630 0.00 0.00 35.83 1.82
580 585 2.371841 TGATAAATACTCCGCCATGGCT 59.628 45.455 33.07 17.87 39.32 4.75
642 647 3.025262 ACCGCCAACTTAACTGGAAAAA 58.975 40.909 3.43 0.00 35.85 1.94
672 677 1.729881 CCAAGGCATAGCTTTCGGC 59.270 57.895 0.00 0.00 42.19 5.54
993 1055 2.018086 AGGAGGAGGAGGAGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
1099 1161 2.005971 CCTCAAGGTGCGTAGTAACC 57.994 55.000 0.00 0.00 36.77 2.85
1100 1162 1.625616 CTCAAGGTGCGTAGTAACCG 58.374 55.000 0.00 0.00 40.51 4.44
1137 1199 1.219124 GATGCTGACGGCTCCTGAA 59.781 57.895 7.96 0.00 42.39 3.02
1150 1212 1.667724 CTCCTGAATTAACTGCGCTGG 59.332 52.381 18.98 9.22 0.00 4.85
1177 1241 0.251165 TGGGTTTCTACAGGCCAAGC 60.251 55.000 5.01 0.00 0.00 4.01
1241 1305 4.791411 GCGCAAGTTTCAGGTACATTTTCA 60.791 41.667 0.30 0.00 41.68 2.69
1242 1306 4.911610 CGCAAGTTTCAGGTACATTTTCAG 59.088 41.667 0.00 0.00 0.00 3.02
1253 1317 4.518970 GGTACATTTTCAGGCTTCTGTTCA 59.481 41.667 0.00 0.00 39.45 3.18
1272 1336 2.438385 AATTGCGTCGTGTGTTCCGC 62.438 55.000 0.00 0.00 45.92 5.54
1319 1383 1.812571 GGAATGCAGAGCGGAAAAAGA 59.187 47.619 0.00 0.00 0.00 2.52
1320 1384 2.228822 GGAATGCAGAGCGGAAAAAGAA 59.771 45.455 0.00 0.00 0.00 2.52
1321 1385 3.496155 GAATGCAGAGCGGAAAAAGAAG 58.504 45.455 0.00 0.00 0.00 2.85
1324 1388 2.549754 TGCAGAGCGGAAAAAGAAGAAG 59.450 45.455 0.00 0.00 0.00 2.85
1350 1414 5.649970 TTTTCCCTCTGGTAGTTTGGTTA 57.350 39.130 0.00 0.00 0.00 2.85
1372 1436 7.065443 GGTTACATTTTCTGTCCATGGTAGTAC 59.935 40.741 12.58 2.66 39.39 2.73
1381 1445 7.913789 TCTGTCCATGGTAGTACTGTTTTATT 58.086 34.615 12.58 0.00 0.00 1.40
1455 1583 6.610741 AAAAGTCTTCATAATCTCATCGCC 57.389 37.500 0.00 0.00 0.00 5.54
1483 1611 9.039870 CAGCCATTATCTTTGTAGACTTTAGAG 57.960 37.037 0.00 0.00 31.99 2.43
1616 2095 5.707066 AGCATGGAAAAGAAGGTCTATCT 57.293 39.130 0.00 0.00 0.00 1.98
1724 2331 3.119495 ACAGAGAACAAACCAAGTTGCAC 60.119 43.478 0.00 0.00 31.29 4.57
1748 2355 7.011016 CACGTGCATTTTATTATCCTACTGTCA 59.989 37.037 0.82 0.00 0.00 3.58
1765 2372 6.364945 ACTGTCAAGACTTTTAGTTGAAGC 57.635 37.500 1.53 0.00 32.15 3.86
1994 2605 6.551601 CCCATAATAGTTAGTCACCTCAGAGT 59.448 42.308 0.00 0.00 0.00 3.24
2048 2659 1.918467 CTCCTCTGGATTGCAGGCCA 61.918 60.000 5.01 9.01 0.00 5.36
2077 2688 5.172205 ACGGAAAGAGAGCAGAAACTTATC 58.828 41.667 0.00 0.00 0.00 1.75
2122 2733 2.998668 CATACGTCGATGGAAAGCAC 57.001 50.000 9.90 0.00 0.00 4.40
2279 2908 4.402155 TGATTCCTTTGTGTTTCTGCTGTT 59.598 37.500 0.00 0.00 0.00 3.16
2369 3000 7.448161 ACTTCCATTCTTTATGAACATGACACA 59.552 33.333 0.00 0.00 37.52 3.72
2377 3008 4.771590 ATGAACATGACACACATTCCAC 57.228 40.909 0.00 0.00 37.07 4.02
2401 3032 3.011032 AGAGCTTCTCATGGGGTTCATTT 59.989 43.478 0.00 0.00 32.92 2.32
2889 3520 5.801947 CCAAGATTTTTACAGTAGCATGCAC 59.198 40.000 21.98 15.57 0.00 4.57
2929 3560 7.716123 TGCATATTCATCATGTTCATGTGTAGA 59.284 33.333 11.73 4.62 0.00 2.59
2931 3562 9.048446 CATATTCATCATGTTCATGTGTAGACA 57.952 33.333 11.73 0.00 36.22 3.41
3095 3726 7.654923 AGTTACTTTAACCTTGTTACTTCTCCG 59.345 37.037 0.00 0.00 39.47 4.63
3214 3847 4.137543 GGATGGACATATGAAGTGGAACC 58.862 47.826 10.38 0.00 37.80 3.62
3217 3850 3.195661 GGACATATGAAGTGGAACCGTC 58.804 50.000 10.38 0.00 37.80 4.79
3444 4077 1.139058 GCATCCTCGGTGACACCTAAT 59.861 52.381 22.14 7.44 35.66 1.73
3509 4142 6.048509 TCTTCTATCAATGCAAAGATACGCA 58.951 36.000 7.22 0.00 43.45 5.24
3573 4206 8.043710 TGTTGAATTGGTCCTTTTGTATGTTTT 58.956 29.630 0.00 0.00 0.00 2.43
3785 4438 0.400213 ACAAGGATCAACCCGAAGCA 59.600 50.000 0.00 0.00 40.05 3.91
3805 4458 1.809684 ACCTTCTAGGCGAACAAAGC 58.190 50.000 0.00 0.00 39.63 3.51
3824 4477 1.814169 GGCTACGCCTACAAGTGCC 60.814 63.158 0.00 0.00 46.69 5.01
3855 4511 1.995484 CTGTCCGCATAACAGACACAG 59.005 52.381 4.54 0.00 45.64 3.66
3974 4630 1.056660 GTCTTCAGGAGGAACCACCA 58.943 55.000 9.72 0.00 42.04 4.17
4146 4803 4.512914 GCTCCACCCATGGCCTCC 62.513 72.222 6.09 0.00 46.80 4.30
4148 4805 4.692041 TCCACCCATGGCCTCCCA 62.692 66.667 6.09 0.00 46.80 4.37
4206 4863 1.149148 GAACGGCACCAAAGTCTCTC 58.851 55.000 0.00 0.00 0.00 3.20
4216 4873 5.163468 GCACCAAAGTCTCTCTCATCATCTA 60.163 44.000 0.00 0.00 0.00 1.98
4218 4875 7.499292 CACCAAAGTCTCTCTCATCATCTAAT 58.501 38.462 0.00 0.00 0.00 1.73
4308 4966 0.802494 CAACTGCCGATGTACCCAAC 59.198 55.000 0.00 0.00 0.00 3.77
4310 4968 1.298340 CTGCCGATGTACCCAACCA 59.702 57.895 0.00 0.00 0.00 3.67
4347 5005 1.587054 CTCTCAGGACGACGCCTTT 59.413 57.895 7.92 0.00 35.66 3.11
4348 5006 0.734253 CTCTCAGGACGACGCCTTTG 60.734 60.000 7.92 5.05 35.66 2.77
4426 5087 1.124477 GGTGGGAAAATGTGGGGCAA 61.124 55.000 0.00 0.00 0.00 4.52
4443 5104 2.359900 GCAAACCCGAATGACATCTCT 58.640 47.619 0.00 0.00 0.00 3.10
4476 5140 3.677648 CCCTCGGGTGTCGTCGTT 61.678 66.667 0.00 0.00 40.32 3.85
4504 5169 3.541713 GCAGGAGCCGACCTAGGG 61.542 72.222 14.81 0.00 38.32 3.53
4639 6338 7.094677 GCTTGCCTTTCAAATAAACCATTTCAT 60.095 33.333 0.00 0.00 34.49 2.57
4718 6419 2.703416 TGCCTTCTACTTGCATCACTG 58.297 47.619 0.00 0.00 0.00 3.66
4746 6447 2.539547 CCTCAAGCAAACACGTGTTCAG 60.540 50.000 32.36 26.65 37.25 3.02
4750 6451 1.014352 GCAAACACGTGTTCAGGACT 58.986 50.000 32.36 14.48 37.25 3.85
4807 6508 7.658261 TGAGCATATGTGTATTGTACTACTCC 58.342 38.462 4.29 0.00 0.00 3.85
4813 6515 5.012239 TGTGTATTGTACTACTCCCTCGTT 58.988 41.667 0.00 0.00 0.00 3.85
4820 6522 5.291971 TGTACTACTCCCTCGTTTCAAAAC 58.708 41.667 0.00 0.00 35.59 2.43
4841 6543 8.943925 CAAAACAAGTGTCTCAATTTTAGTACG 58.056 33.333 0.00 0.00 0.00 3.67
4842 6544 8.428186 AAACAAGTGTCTCAATTTTAGTACGA 57.572 30.769 0.00 0.00 0.00 3.43
4843 6545 7.639162 ACAAGTGTCTCAATTTTAGTACGAG 57.361 36.000 0.00 0.00 0.00 4.18
4844 6546 6.645415 ACAAGTGTCTCAATTTTAGTACGAGG 59.355 38.462 0.00 0.00 0.00 4.63
4845 6547 5.721232 AGTGTCTCAATTTTAGTACGAGGG 58.279 41.667 0.00 0.00 0.00 4.30
4846 6548 5.479375 AGTGTCTCAATTTTAGTACGAGGGA 59.521 40.000 0.00 0.00 0.00 4.20
4847 6549 5.805994 GTGTCTCAATTTTAGTACGAGGGAG 59.194 44.000 0.00 0.00 0.00 4.30
4848 6550 5.479375 TGTCTCAATTTTAGTACGAGGGAGT 59.521 40.000 0.00 0.00 0.00 3.85
4849 6551 6.660521 TGTCTCAATTTTAGTACGAGGGAGTA 59.339 38.462 0.00 0.00 0.00 2.59
4850 6552 6.971756 GTCTCAATTTTAGTACGAGGGAGTAC 59.028 42.308 0.00 0.00 45.31 2.73
4881 8375 5.702670 CCTTTCAGTGCTCTTCTGAATTGTA 59.297 40.000 8.77 0.00 46.59 2.41
4951 8456 8.716646 TCAAAATAAATGCAGAATAGTCGAGA 57.283 30.769 0.00 0.00 0.00 4.04
4960 8465 2.826128 AGAATAGTCGAGAAGCACACCA 59.174 45.455 0.00 0.00 0.00 4.17
4987 8492 8.948631 TCTTGATTTATTGGCACTACTCTTAG 57.051 34.615 0.00 0.00 0.00 2.18
4999 8504 5.507637 CACTACTCTTAGTTACTCCCTCCA 58.492 45.833 0.00 0.00 36.31 3.86
5103 8608 7.889469 AGATTCACTTATTTTGCTTCATGTGT 58.111 30.769 0.00 0.00 0.00 3.72
5104 8609 9.013229 AGATTCACTTATTTTGCTTCATGTGTA 57.987 29.630 0.00 0.00 0.00 2.90
5105 8610 9.282247 GATTCACTTATTTTGCTTCATGTGTAG 57.718 33.333 0.00 0.00 0.00 2.74
5106 8611 7.744087 TCACTTATTTTGCTTCATGTGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
5107 8612 7.806690 TCACTTATTTTGCTTCATGTGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
5108 8613 7.661437 TCACTTATTTTGCTTCATGTGTAGTCT 59.339 33.333 0.00 0.00 0.00 3.24
5109 8614 8.292448 CACTTATTTTGCTTCATGTGTAGTCTT 58.708 33.333 0.00 0.00 0.00 3.01
5110 8615 8.850156 ACTTATTTTGCTTCATGTGTAGTCTTT 58.150 29.630 0.00 0.00 0.00 2.52
5114 8619 9.630098 ATTTTGCTTCATGTGTAGTCTTTAATG 57.370 29.630 0.00 0.00 0.00 1.90
5115 8620 7.977789 TTGCTTCATGTGTAGTCTTTAATGA 57.022 32.000 0.00 0.00 0.00 2.57
5116 8621 7.977789 TGCTTCATGTGTAGTCTTTAATGAA 57.022 32.000 0.00 0.00 34.04 2.57
5117 8622 8.389779 TGCTTCATGTGTAGTCTTTAATGAAA 57.610 30.769 0.00 0.00 34.59 2.69
5118 8623 9.013229 TGCTTCATGTGTAGTCTTTAATGAAAT 57.987 29.630 0.00 0.00 34.59 2.17
5183 8693 8.656806 TCTAATCCTTTTAGTCCTCAGTTTTGA 58.343 33.333 0.00 0.00 0.00 2.69
5205 8715 2.754946 TTTTACACCTGCTCCCTACG 57.245 50.000 0.00 0.00 0.00 3.51
5206 8716 1.636148 TTTACACCTGCTCCCTACGT 58.364 50.000 0.00 0.00 0.00 3.57
5207 8717 1.636148 TTACACCTGCTCCCTACGTT 58.364 50.000 0.00 0.00 0.00 3.99
5208 8718 1.180029 TACACCTGCTCCCTACGTTC 58.820 55.000 0.00 0.00 0.00 3.95
5209 8719 0.542232 ACACCTGCTCCCTACGTTCT 60.542 55.000 0.00 0.00 0.00 3.01
5210 8720 0.108615 CACCTGCTCCCTACGTTCTG 60.109 60.000 0.00 0.00 0.00 3.02
5211 8721 0.251653 ACCTGCTCCCTACGTTCTGA 60.252 55.000 0.00 0.00 0.00 3.27
5212 8722 0.895530 CCTGCTCCCTACGTTCTGAA 59.104 55.000 0.00 0.00 0.00 3.02
5213 8723 1.482593 CCTGCTCCCTACGTTCTGAAT 59.517 52.381 0.00 0.00 0.00 2.57
5214 8724 2.093447 CCTGCTCCCTACGTTCTGAATT 60.093 50.000 0.00 0.00 0.00 2.17
5215 8725 3.132289 CCTGCTCCCTACGTTCTGAATTA 59.868 47.826 0.00 0.00 0.00 1.40
5216 8726 4.113354 CTGCTCCCTACGTTCTGAATTAC 58.887 47.826 0.00 0.00 0.00 1.89
5217 8727 3.767673 TGCTCCCTACGTTCTGAATTACT 59.232 43.478 0.00 0.00 0.00 2.24
5218 8728 4.222145 TGCTCCCTACGTTCTGAATTACTT 59.778 41.667 0.00 0.00 0.00 2.24
5219 8729 4.567159 GCTCCCTACGTTCTGAATTACTTG 59.433 45.833 0.00 0.00 0.00 3.16
5220 8730 5.721232 CTCCCTACGTTCTGAATTACTTGT 58.279 41.667 0.00 0.00 0.00 3.16
5221 8731 5.717119 TCCCTACGTTCTGAATTACTTGTC 58.283 41.667 0.00 0.00 0.00 3.18
5222 8732 4.561606 CCCTACGTTCTGAATTACTTGTCG 59.438 45.833 0.00 0.00 0.00 4.35
5223 8733 4.031426 CCTACGTTCTGAATTACTTGTCGC 59.969 45.833 0.00 0.00 0.00 5.19
5224 8734 3.386486 ACGTTCTGAATTACTTGTCGCA 58.614 40.909 0.00 0.00 0.00 5.10
5225 8735 3.183775 ACGTTCTGAATTACTTGTCGCAC 59.816 43.478 0.00 0.00 0.00 5.34
5226 8736 3.718036 CGTTCTGAATTACTTGTCGCACG 60.718 47.826 0.00 0.00 0.00 5.34
5227 8737 3.021269 TCTGAATTACTTGTCGCACGT 57.979 42.857 0.00 0.00 0.00 4.49
5228 8738 4.163458 TCTGAATTACTTGTCGCACGTA 57.837 40.909 0.00 0.00 0.00 3.57
5229 8739 4.740268 TCTGAATTACTTGTCGCACGTAT 58.260 39.130 0.00 0.00 0.00 3.06
5230 8740 4.561213 TCTGAATTACTTGTCGCACGTATG 59.439 41.667 0.00 0.00 0.00 2.39
5231 8741 3.615056 TGAATTACTTGTCGCACGTATGG 59.385 43.478 0.00 0.00 0.00 2.74
5232 8742 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
5233 8743 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
5234 8744 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
5235 8745 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
5236 8746 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
5237 8747 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
5238 8748 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
5239 8749 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
5240 8750 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
5241 8751 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
5242 8752 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
5243 8753 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
5244 8754 6.036844 GTCGCACGTATGGATGTATCTAGATA 59.963 42.308 8.44 8.44 0.00 1.98
5245 8755 6.766467 TCGCACGTATGGATGTATCTAGATAT 59.234 38.462 15.43 1.62 0.00 1.63
5246 8756 7.929785 TCGCACGTATGGATGTATCTAGATATA 59.070 37.037 15.43 13.22 0.00 0.86
5247 8757 8.722394 CGCACGTATGGATGTATCTAGATATAT 58.278 37.037 18.82 18.82 0.00 0.86
5276 8786 8.397575 AGTTCTAGATACATCTATTTCAGCGA 57.602 34.615 0.00 0.00 38.60 4.93
5277 8787 8.293867 AGTTCTAGATACATCTATTTCAGCGAC 58.706 37.037 0.00 0.00 38.60 5.19
5278 8788 6.832804 TCTAGATACATCTATTTCAGCGACG 58.167 40.000 0.00 0.00 38.60 5.12
5279 8789 5.690997 AGATACATCTATTTCAGCGACGA 57.309 39.130 0.00 0.00 34.85 4.20
5280 8790 5.694816 AGATACATCTATTTCAGCGACGAG 58.305 41.667 0.00 0.00 34.85 4.18
5281 8791 3.784701 ACATCTATTTCAGCGACGAGT 57.215 42.857 0.00 0.00 0.00 4.18
5282 8792 4.895224 ACATCTATTTCAGCGACGAGTA 57.105 40.909 0.00 0.00 0.00 2.59
5283 8793 5.244785 ACATCTATTTCAGCGACGAGTAA 57.755 39.130 0.00 0.00 0.00 2.24
5284 8794 5.833082 ACATCTATTTCAGCGACGAGTAAT 58.167 37.500 0.00 0.00 0.00 1.89
5285 8795 6.273825 ACATCTATTTCAGCGACGAGTAATT 58.726 36.000 0.00 0.00 0.00 1.40
5286 8796 6.757010 ACATCTATTTCAGCGACGAGTAATTT 59.243 34.615 0.00 0.00 0.00 1.82
5287 8797 6.569228 TCTATTTCAGCGACGAGTAATTTG 57.431 37.500 0.00 0.00 0.00 2.32
5288 8798 4.600012 ATTTCAGCGACGAGTAATTTGG 57.400 40.909 0.00 0.00 0.00 3.28
5289 8799 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
5290 8800 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
5291 8801 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
5292 8802 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
5293 8803 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
5294 8804 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
5295 8805 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
5296 8806 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5297 8807 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5298 8808 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5299 8809 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5309 8819 0.917533 ACGGAGGGAGTAGCTCAGTA 59.082 55.000 0.00 0.00 31.08 2.74
5549 9065 1.304217 ACCGTCGAGAGTCCATGGT 60.304 57.895 12.58 0.00 0.00 3.55
5580 9096 5.588240 TCTTGTGATCTGTATAAACGCGAT 58.412 37.500 15.93 0.00 0.00 4.58
5606 9122 3.515502 TCAGGTCGATTCAGGACATCTTT 59.484 43.478 0.00 0.00 36.12 2.52
5688 9205 3.614616 GCAAGTATAGATATGGCTGCGAC 59.385 47.826 0.00 0.00 0.00 5.19
5777 9300 2.216898 GTGCTCTTTCACTGTTCAGCT 58.783 47.619 0.00 0.00 34.29 4.24
5899 9422 2.797278 CGTCCCTGCCCTTATCGCT 61.797 63.158 0.00 0.00 0.00 4.93
5908 9431 1.606903 CCCTTATCGCTCTACCGAGT 58.393 55.000 0.00 0.00 40.97 4.18
5948 9475 1.671054 GTGTCGTGGACCATGGTGG 60.671 63.158 25.52 8.82 45.02 4.61
6004 9563 1.678598 TAATGGCGGACTACGGTGGG 61.679 60.000 0.00 0.00 44.51 4.61
6341 9906 0.179048 CGCTTATGAGGGCATGGTCA 60.179 55.000 0.00 0.00 35.94 4.02
6345 9916 0.471191 TATGAGGGCATGGTCAGCAG 59.529 55.000 0.00 0.00 35.94 4.24
6409 9980 2.357517 CTGGGCGAGACTTTGCGT 60.358 61.111 0.00 0.00 34.28 5.24
6469 10040 5.776850 TTTTCGCTCGTTTAATTTGTTCG 57.223 34.783 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.435059 GACTCGAAGGGCACTGGC 60.435 66.667 0.00 0.00 40.13 4.85
29 30 1.374758 GTGACTCGAAGGGCACTGG 60.375 63.158 3.47 0.00 0.00 4.00
30 31 1.374758 GGTGACTCGAAGGGCACTG 60.375 63.158 10.19 0.00 0.00 3.66
36 37 0.318441 TGCTTCAGGTGACTCGAAGG 59.682 55.000 13.58 0.77 41.67 3.46
45 46 1.954528 CACAAGGCTGCTTCAGGTG 59.045 57.895 0.00 0.00 31.21 4.00
46 47 1.900498 GCACAAGGCTGCTTCAGGT 60.900 57.895 0.00 0.00 40.25 4.00
52 53 4.711949 CTCCCGCACAAGGCTGCT 62.712 66.667 0.00 0.00 41.67 4.24
67 68 1.067582 CGTATCAGGAACCCCGCTC 59.932 63.158 0.00 0.00 37.58 5.03
75 76 0.325296 AGCTGGGACCGTATCAGGAA 60.325 55.000 0.00 0.00 34.73 3.36
81 82 0.541863 CCTTTCAGCTGGGACCGTAT 59.458 55.000 15.13 0.00 0.00 3.06
85 86 1.973812 GTGCCTTTCAGCTGGGACC 60.974 63.158 15.13 0.00 38.50 4.46
145 146 4.980702 TGCCAGGCTGGTTGCAGG 62.981 66.667 32.80 7.95 45.15 4.85
202 203 0.620556 TCATGGTGAAGAAGGCCTCC 59.379 55.000 5.23 1.34 0.00 4.30
206 207 2.471255 CCGTCATGGTGAAGAAGGC 58.529 57.895 0.00 0.00 0.00 4.35
228 229 0.549950 ATTGTCAGCATCCAGAGGGG 59.450 55.000 0.00 0.00 38.37 4.79
245 246 2.816087 AGCAAAGCGATTCACTGTCATT 59.184 40.909 0.00 0.00 0.00 2.57
271 272 0.818040 AAAGTGGAACGGCAGGTGAC 60.818 55.000 0.00 0.00 45.86 3.67
272 273 0.817634 CAAAGTGGAACGGCAGGTGA 60.818 55.000 0.00 0.00 45.86 4.02
274 275 2.193536 GCAAAGTGGAACGGCAGGT 61.194 57.895 0.00 0.00 45.86 4.00
277 278 2.909965 GGGCAAAGTGGAACGGCA 60.910 61.111 0.00 0.00 45.86 5.69
305 306 1.819229 CCGACCTCTGCAGCACTAT 59.181 57.895 9.47 0.00 0.00 2.12
325 326 4.070552 GAGAGCAGGAACGCCGGT 62.071 66.667 1.90 0.00 39.96 5.28
380 381 4.974645 AGAACTGGATGTAACACTTGGA 57.025 40.909 0.00 0.00 0.00 3.53
381 382 5.308825 AGAAGAACTGGATGTAACACTTGG 58.691 41.667 0.00 0.00 0.00 3.61
382 383 6.073003 GGAAGAAGAACTGGATGTAACACTTG 60.073 42.308 0.00 0.00 0.00 3.16
383 384 5.998363 GGAAGAAGAACTGGATGTAACACTT 59.002 40.000 0.00 0.00 0.00 3.16
384 385 5.308237 AGGAAGAAGAACTGGATGTAACACT 59.692 40.000 0.00 0.00 0.00 3.55
385 386 5.552178 AGGAAGAAGAACTGGATGTAACAC 58.448 41.667 0.00 0.00 0.00 3.32
386 387 5.825593 AGGAAGAAGAACTGGATGTAACA 57.174 39.130 0.00 0.00 0.00 2.41
387 388 6.568653 GCAAAGGAAGAAGAACTGGATGTAAC 60.569 42.308 0.00 0.00 0.00 2.50
388 389 5.473504 GCAAAGGAAGAAGAACTGGATGTAA 59.526 40.000 0.00 0.00 0.00 2.41
389 390 5.003804 GCAAAGGAAGAAGAACTGGATGTA 58.996 41.667 0.00 0.00 0.00 2.29
390 391 3.823304 GCAAAGGAAGAAGAACTGGATGT 59.177 43.478 0.00 0.00 0.00 3.06
393 394 3.117888 ACTGCAAAGGAAGAAGAACTGGA 60.118 43.478 0.00 0.00 0.00 3.86
404 405 1.225855 CGCACACTACTGCAAAGGAA 58.774 50.000 0.00 0.00 36.94 3.36
429 430 3.504906 ACTACAAGCAGCGTCTACTAACA 59.495 43.478 0.00 0.00 0.00 2.41
431 432 4.008330 AGACTACAAGCAGCGTCTACTAA 58.992 43.478 0.00 0.00 35.15 2.24
439 440 2.447887 CCGCAGACTACAAGCAGCG 61.448 63.158 0.00 0.00 44.24 5.18
467 471 7.604927 GTCACCATACTGTTACTTAAATCCACA 59.395 37.037 0.00 0.00 0.00 4.17
497 501 0.325296 ATGAGGGGCTACACGAGGAA 60.325 55.000 0.00 0.00 0.00 3.36
509 513 1.896465 GCCTAGCAGTACTATGAGGGG 59.104 57.143 14.72 6.41 0.00 4.79
523 527 6.980978 TCTCGATATATGCTTTATTGCCTAGC 59.019 38.462 0.00 0.00 35.50 3.42
524 528 9.539825 AATCTCGATATATGCTTTATTGCCTAG 57.460 33.333 0.00 0.00 0.00 3.02
525 529 9.890629 AAATCTCGATATATGCTTTATTGCCTA 57.109 29.630 0.00 0.00 0.00 3.93
526 530 8.798859 AAATCTCGATATATGCTTTATTGCCT 57.201 30.769 0.00 0.00 0.00 4.75
527 531 9.846248 AAAAATCTCGATATATGCTTTATTGCC 57.154 29.630 0.00 0.00 0.00 4.52
552 556 7.390440 CCATGGCGGAGTATTTATCATAAGAAA 59.610 37.037 0.00 0.00 36.56 2.52
592 597 4.424711 AATGACGGGGGCGTGCAT 62.425 61.111 0.00 0.00 0.00 3.96
595 600 4.096003 AGGAATGACGGGGGCGTG 62.096 66.667 0.00 0.00 0.00 5.34
596 601 3.782443 GAGGAATGACGGGGGCGT 61.782 66.667 0.00 0.00 0.00 5.68
597 602 4.891727 CGAGGAATGACGGGGGCG 62.892 72.222 0.00 0.00 0.00 6.13
598 603 3.467226 TCGAGGAATGACGGGGGC 61.467 66.667 0.00 0.00 0.00 5.80
599 604 2.499685 GTCGAGGAATGACGGGGG 59.500 66.667 0.00 0.00 0.00 5.40
604 609 1.810030 GTGGCCGTCGAGGAATGAC 60.810 63.158 6.70 0.00 45.00 3.06
605 610 2.577059 GTGGCCGTCGAGGAATGA 59.423 61.111 6.70 0.00 45.00 2.57
672 677 2.459934 GCAAAACAGAAAGTTCCCGTG 58.540 47.619 0.00 0.00 40.26 4.94
853 895 1.523938 GTAGCTAGGGCAAAGGGCG 60.524 63.158 0.00 0.00 46.16 6.13
993 1055 2.109126 GTCCTTCACCATCGCAGCC 61.109 63.158 0.00 0.00 0.00 4.85
1094 1156 2.128035 CGCTCATCAAGGATCGGTTAC 58.872 52.381 0.00 0.00 0.00 2.50
1096 1158 0.824109 TCGCTCATCAAGGATCGGTT 59.176 50.000 0.00 0.00 0.00 4.44
1098 1160 1.707632 GATCGCTCATCAAGGATCGG 58.292 55.000 0.00 0.00 0.00 4.18
1099 1161 1.334994 CGATCGCTCATCAAGGATCG 58.665 55.000 0.26 7.72 42.88 3.69
1100 1162 1.270826 TCCGATCGCTCATCAAGGATC 59.729 52.381 10.32 0.00 32.57 3.36
1137 1199 0.744414 ACATCGCCAGCGCAGTTAAT 60.744 50.000 11.47 0.00 39.59 1.40
1150 1212 2.161609 CCTGTAGAAACCCAAACATCGC 59.838 50.000 0.00 0.00 0.00 4.58
1177 1241 3.467803 GATTCTTATCCGGGTGAACCAG 58.532 50.000 0.00 0.00 40.22 4.00
1241 1305 1.537202 GACGCAATTGAACAGAAGCCT 59.463 47.619 10.34 0.00 0.00 4.58
1242 1306 1.725931 CGACGCAATTGAACAGAAGCC 60.726 52.381 10.34 0.00 0.00 4.35
1253 1317 1.567537 CGGAACACACGACGCAATT 59.432 52.632 0.00 0.00 0.00 2.32
1276 1340 3.458118 TGAATCCAGTAACAGGGGTATGG 59.542 47.826 0.00 0.00 0.00 2.74
1278 1342 3.716872 CCTGAATCCAGTAACAGGGGTAT 59.283 47.826 0.00 0.00 44.04 2.73
1319 1383 5.788014 ACTACCAGAGGGAAAATCTCTTCTT 59.212 40.000 0.00 0.00 39.36 2.52
1320 1384 5.346270 ACTACCAGAGGGAAAATCTCTTCT 58.654 41.667 0.00 0.00 39.36 2.85
1321 1385 5.685520 ACTACCAGAGGGAAAATCTCTTC 57.314 43.478 0.00 0.00 39.36 2.87
1324 1388 4.944317 CCAAACTACCAGAGGGAAAATCTC 59.056 45.833 0.00 0.00 38.05 2.75
1433 1559 4.747108 CGGCGATGAGATTATGAAGACTTT 59.253 41.667 0.00 0.00 0.00 2.66
1455 1583 4.122776 AGTCTACAAAGATAATGGCTGCG 58.877 43.478 0.00 0.00 33.30 5.18
1483 1611 2.954318 TGTGGCGAGGTAGTAACTATCC 59.046 50.000 0.00 0.00 0.00 2.59
1486 1614 5.653769 AGTATTTGTGGCGAGGTAGTAACTA 59.346 40.000 0.00 0.00 0.00 2.24
1487 1615 3.975168 ATTTGTGGCGAGGTAGTAACT 57.025 42.857 0.00 0.00 0.00 2.24
1724 2331 7.477144 TGACAGTAGGATAATAAAATGCACG 57.523 36.000 0.00 0.00 0.00 5.34
1748 2355 4.036852 GTGGCAGCTTCAACTAAAAGTCTT 59.963 41.667 0.00 0.00 0.00 3.01
1765 2372 2.662791 CGTCGTCAAAATTCAGTGGCAG 60.663 50.000 0.00 0.00 0.00 4.85
2048 2659 1.808945 CTGCTCTCTTTCCGTTTGCAT 59.191 47.619 0.00 0.00 0.00 3.96
2077 2688 5.118990 TGAATTCGATTCTTAAGGCTCAGG 58.881 41.667 1.85 0.00 39.96 3.86
2122 2733 2.302445 TGCCCAATCACCAAATTCCTTG 59.698 45.455 0.00 0.00 34.52 3.61
2347 2978 6.912082 TGTGTGTCATGTTCATAAAGAATGG 58.088 36.000 0.00 0.00 38.76 3.16
2369 3000 4.141756 CCATGAGAAGCTCTAGTGGAATGT 60.142 45.833 0.00 0.00 33.49 2.71
2377 3008 2.768527 TGAACCCCATGAGAAGCTCTAG 59.231 50.000 0.00 0.00 0.00 2.43
2401 3032 9.421806 CCAAAAGCTGAAATATTATTTGACACA 57.578 29.630 6.38 0.00 0.00 3.72
2889 3520 8.016801 TGATGAATATGCAAATATAAGCACACG 58.983 33.333 4.33 0.00 44.49 4.49
2929 3560 8.525290 AAATAGCTGCCAAGAGTATTTATTGT 57.475 30.769 0.00 0.00 29.13 2.71
2931 3562 8.624776 GTGAAATAGCTGCCAAGAGTATTTATT 58.375 33.333 0.00 0.00 30.21 1.40
3095 3726 0.963962 TCTGTCCGAACACACTACCC 59.036 55.000 0.00 0.00 0.00 3.69
3214 3847 2.358247 CAGGGGGTGGTTTCGACG 60.358 66.667 0.00 0.00 0.00 5.12
3217 3850 2.734948 TTACGCAGGGGGTGGTTTCG 62.735 60.000 0.00 0.00 0.00 3.46
3273 3906 9.965902 AGAATATCAACTTCCTTTCACTTGTAT 57.034 29.630 0.00 0.00 0.00 2.29
3275 3908 9.965902 ATAGAATATCAACTTCCTTTCACTTGT 57.034 29.630 0.00 0.00 0.00 3.16
3314 3947 6.245890 TGAAATTGGGTTTGACCTTGAAAT 57.754 33.333 0.00 0.00 38.64 2.17
3317 3950 5.885449 AATGAAATTGGGTTTGACCTTGA 57.115 34.783 0.00 0.00 38.64 3.02
3444 4077 0.464036 CCTCTAGGCGGCATACACAA 59.536 55.000 13.08 0.00 0.00 3.33
3584 4217 8.836268 AAATGCAAAGCTTCAAAATCAGATTA 57.164 26.923 0.00 0.00 0.00 1.75
3785 4438 2.152016 GCTTTGTTCGCCTAGAAGGTT 58.848 47.619 0.00 0.00 39.95 3.50
3822 4475 2.439156 GACAGGGCACATCTGGGC 60.439 66.667 0.00 0.00 45.53 5.36
3824 4477 2.124983 CGGACAGGGCACATCTGG 60.125 66.667 0.00 0.00 36.62 3.86
3855 4511 4.822350 GGTCTTAAGGCCATTGGATTAGAC 59.178 45.833 21.48 9.86 0.00 2.59
3891 4547 1.772063 GCGGTGCACGTTATGGGATC 61.772 60.000 11.45 0.00 46.52 3.36
3974 4630 2.551270 TGGGACTAGCAGGATCTTTGT 58.449 47.619 0.00 0.00 0.00 2.83
4160 4817 0.614697 TGGAGGCATCGTCTTGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
4206 4863 5.233988 GGTCTCCCGAAATTAGATGATGAG 58.766 45.833 0.00 0.00 0.00 2.90
4347 5005 4.680237 CTTGGCGCCGTGTCCTCA 62.680 66.667 23.90 0.00 0.00 3.86
4348 5006 4.373116 TCTTGGCGCCGTGTCCTC 62.373 66.667 23.90 0.00 0.00 3.71
4379 5040 2.176889 CTCTCGGGTGAAAACCCTAGA 58.823 52.381 15.24 15.24 45.89 2.43
4426 5087 3.643237 TCCTAGAGATGTCATTCGGGTT 58.357 45.455 0.00 0.00 0.00 4.11
4443 5104 1.002773 GAGGGTGCCGTTTTCTTCCTA 59.997 52.381 0.00 0.00 0.00 2.94
4504 5169 1.004394 GGGGTCCGGATTGGGATAATC 59.996 57.143 7.81 0.00 38.61 1.75
4691 6392 7.039784 AGTGATGCAAGTAGAAGGCAAAAATAA 60.040 33.333 0.00 0.00 41.43 1.40
4718 6419 2.665519 CGTGTTTGCTTGAGGTACATGC 60.666 50.000 0.00 0.00 45.78 4.06
4746 6447 2.476185 GCGTGTGCACATAAATCAGTCC 60.476 50.000 24.69 4.69 42.15 3.85
4750 6451 1.468127 CCAGCGTGTGCACATAAATCA 59.532 47.619 24.69 0.00 46.23 2.57
4820 6522 6.090898 CCCTCGTACTAAAATTGAGACACTTG 59.909 42.308 0.00 0.00 0.00 3.16
4841 6543 3.056322 TGAAAGGCTAAACGTACTCCCTC 60.056 47.826 0.00 0.00 0.00 4.30
4842 6544 2.901839 TGAAAGGCTAAACGTACTCCCT 59.098 45.455 0.00 0.00 0.00 4.20
4843 6545 3.259902 CTGAAAGGCTAAACGTACTCCC 58.740 50.000 0.00 0.00 0.00 4.30
4844 6546 3.678548 CACTGAAAGGCTAAACGTACTCC 59.321 47.826 0.00 0.00 39.30 3.85
4845 6547 3.123116 GCACTGAAAGGCTAAACGTACTC 59.877 47.826 0.00 0.00 39.30 2.59
4846 6548 3.064931 GCACTGAAAGGCTAAACGTACT 58.935 45.455 0.00 0.00 39.30 2.73
4847 6549 3.064931 AGCACTGAAAGGCTAAACGTAC 58.935 45.455 0.00 0.00 38.44 3.67
4848 6550 3.006537 AGAGCACTGAAAGGCTAAACGTA 59.993 43.478 0.00 0.00 39.93 3.57
4849 6551 2.143925 GAGCACTGAAAGGCTAAACGT 58.856 47.619 0.00 0.00 39.93 3.99
4850 6552 2.417719 AGAGCACTGAAAGGCTAAACG 58.582 47.619 0.00 0.00 39.93 3.60
4851 6553 4.068599 AGAAGAGCACTGAAAGGCTAAAC 58.931 43.478 0.00 0.00 39.93 2.01
4855 8312 1.696336 TCAGAAGAGCACTGAAAGGCT 59.304 47.619 0.00 0.00 42.01 4.58
4932 8426 5.520288 GTGCTTCTCGACTATTCTGCATTTA 59.480 40.000 0.00 0.00 0.00 1.40
4942 8447 3.449018 AGAATGGTGTGCTTCTCGACTAT 59.551 43.478 0.00 0.00 0.00 2.12
4951 8456 6.400568 CCAATAAATCAAGAATGGTGTGCTT 58.599 36.000 0.00 0.00 0.00 3.91
4960 8465 8.814038 AAGAGTAGTGCCAATAAATCAAGAAT 57.186 30.769 0.00 0.00 0.00 2.40
5011 8516 7.383687 TGTGAAATCTCTAAACGGTCTTGTAT 58.616 34.615 0.00 0.00 0.00 2.29
5012 8517 6.751157 TGTGAAATCTCTAAACGGTCTTGTA 58.249 36.000 0.00 0.00 0.00 2.41
5013 8518 5.607477 TGTGAAATCTCTAAACGGTCTTGT 58.393 37.500 0.00 0.00 0.00 3.16
5014 8519 6.539649 TTGTGAAATCTCTAAACGGTCTTG 57.460 37.500 0.00 0.00 0.00 3.02
5077 8582 9.013229 ACACATGAAGCAAAATAAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
5078 8583 7.889469 ACACATGAAGCAAAATAAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
5079 8584 9.282247 CTACACATGAAGCAAAATAAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
5080 8585 8.796475 ACTACACATGAAGCAAAATAAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
5081 8586 8.165239 ACTACACATGAAGCAAAATAAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
5082 8587 7.661437 AGACTACACATGAAGCAAAATAAGTGA 59.339 33.333 0.00 0.00 0.00 3.41
5083 8588 7.810658 AGACTACACATGAAGCAAAATAAGTG 58.189 34.615 0.00 0.00 0.00 3.16
5084 8589 7.986085 AGACTACACATGAAGCAAAATAAGT 57.014 32.000 0.00 0.00 0.00 2.24
5088 8593 9.630098 CATTAAAGACTACACATGAAGCAAAAT 57.370 29.630 0.00 0.00 0.00 1.82
5089 8594 8.845227 TCATTAAAGACTACACATGAAGCAAAA 58.155 29.630 0.00 0.00 0.00 2.44
5090 8595 8.389779 TCATTAAAGACTACACATGAAGCAAA 57.610 30.769 0.00 0.00 0.00 3.68
5091 8596 7.977789 TCATTAAAGACTACACATGAAGCAA 57.022 32.000 0.00 0.00 0.00 3.91
5092 8597 7.977789 TTCATTAAAGACTACACATGAAGCA 57.022 32.000 0.00 0.00 0.00 3.91
5127 8632 7.229308 ACCCCTCCGTTCCTAAATATAAAATC 58.771 38.462 0.00 0.00 0.00 2.17
5128 8633 7.157947 ACCCCTCCGTTCCTAAATATAAAAT 57.842 36.000 0.00 0.00 0.00 1.82
5130 8635 7.127032 TGTTACCCCTCCGTTCCTAAATATAAA 59.873 37.037 0.00 0.00 0.00 1.40
5134 8639 4.360889 TGTTACCCCTCCGTTCCTAAATA 58.639 43.478 0.00 0.00 0.00 1.40
5138 8643 2.023695 AGATGTTACCCCTCCGTTCCTA 60.024 50.000 0.00 0.00 0.00 2.94
5139 8644 1.201424 GATGTTACCCCTCCGTTCCT 58.799 55.000 0.00 0.00 0.00 3.36
5196 8706 4.388378 AGTAATTCAGAACGTAGGGAGC 57.612 45.455 0.00 0.00 0.00 4.70
5197 8707 5.721232 ACAAGTAATTCAGAACGTAGGGAG 58.279 41.667 0.00 0.00 0.00 4.30
5198 8708 5.620654 CGACAAGTAATTCAGAACGTAGGGA 60.621 44.000 0.00 0.00 0.00 4.20
5199 8709 4.561606 CGACAAGTAATTCAGAACGTAGGG 59.438 45.833 0.00 0.00 0.00 3.53
5201 8711 4.619760 TGCGACAAGTAATTCAGAACGTAG 59.380 41.667 0.00 0.00 0.00 3.51
5202 8712 4.383649 GTGCGACAAGTAATTCAGAACGTA 59.616 41.667 0.00 0.00 0.00 3.57
5203 8713 3.183775 GTGCGACAAGTAATTCAGAACGT 59.816 43.478 0.00 0.00 0.00 3.99
5204 8714 3.718036 CGTGCGACAAGTAATTCAGAACG 60.718 47.826 0.00 0.00 0.00 3.95
5205 8715 3.183775 ACGTGCGACAAGTAATTCAGAAC 59.816 43.478 0.00 0.00 0.00 3.01
5206 8716 3.386486 ACGTGCGACAAGTAATTCAGAA 58.614 40.909 0.00 0.00 0.00 3.02
5207 8717 3.021269 ACGTGCGACAAGTAATTCAGA 57.979 42.857 0.00 0.00 0.00 3.27
5208 8718 4.259810 CCATACGTGCGACAAGTAATTCAG 60.260 45.833 0.00 0.88 32.82 3.02
5209 8719 3.615056 CCATACGTGCGACAAGTAATTCA 59.385 43.478 0.00 0.00 32.82 2.57
5210 8720 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
5211 8721 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
5212 8722 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
5213 8723 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
5214 8724 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
5215 8725 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
5216 8726 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
5217 8727 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
5218 8728 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
5219 8729 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
5220 8730 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
5221 8731 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
5250 8760 9.503399 TCGCTGAAATAGATGTATCTAGAACTA 57.497 33.333 0.00 0.00 42.20 2.24
5251 8761 8.293867 GTCGCTGAAATAGATGTATCTAGAACT 58.706 37.037 0.00 0.00 42.20 3.01
5252 8762 7.269511 CGTCGCTGAAATAGATGTATCTAGAAC 59.730 40.741 0.00 0.00 42.20 3.01
5253 8763 7.172703 TCGTCGCTGAAATAGATGTATCTAGAA 59.827 37.037 0.00 0.00 42.20 2.10
5254 8764 6.649557 TCGTCGCTGAAATAGATGTATCTAGA 59.350 38.462 7.57 0.00 42.20 2.43
5255 8765 6.832804 TCGTCGCTGAAATAGATGTATCTAG 58.167 40.000 7.57 0.00 42.20 2.43
5256 8766 6.427242 ACTCGTCGCTGAAATAGATGTATCTA 59.573 38.462 4.22 4.22 43.00 1.98
5257 8767 5.239744 ACTCGTCGCTGAAATAGATGTATCT 59.760 40.000 0.00 0.00 40.86 1.98
5258 8768 5.453648 ACTCGTCGCTGAAATAGATGTATC 58.546 41.667 0.00 0.00 0.00 2.24
5259 8769 5.440234 ACTCGTCGCTGAAATAGATGTAT 57.560 39.130 0.00 0.00 0.00 2.29
5260 8770 4.895224 ACTCGTCGCTGAAATAGATGTA 57.105 40.909 0.00 0.00 0.00 2.29
5261 8771 3.784701 ACTCGTCGCTGAAATAGATGT 57.215 42.857 0.00 0.00 0.00 3.06
5262 8772 6.755461 AATTACTCGTCGCTGAAATAGATG 57.245 37.500 0.00 0.00 0.00 2.90
5263 8773 6.201044 CCAAATTACTCGTCGCTGAAATAGAT 59.799 38.462 0.00 0.00 0.00 1.98
5264 8774 5.518847 CCAAATTACTCGTCGCTGAAATAGA 59.481 40.000 0.00 0.00 0.00 1.98
5265 8775 5.518847 TCCAAATTACTCGTCGCTGAAATAG 59.481 40.000 0.00 0.00 0.00 1.73
5266 8776 5.412640 TCCAAATTACTCGTCGCTGAAATA 58.587 37.500 0.00 0.00 0.00 1.40
5267 8777 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
5268 8778 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
5269 8779 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
5270 8780 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
5271 8781 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
5272 8782 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
5273 8783 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
5274 8784 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
5275 8785 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
5276 8786 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
5277 8787 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
5278 8788 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
5279 8789 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5280 8790 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5281 8791 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
5282 8792 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
5283 8793 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
5284 8794 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
5285 8795 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
5286 8796 0.683504 GAGCTACTCCCTCCGTTCCA 60.684 60.000 0.00 0.00 0.00 3.53
5287 8797 0.683504 TGAGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
5288 8798 0.741915 CTGAGCTACTCCCTCCGTTC 59.258 60.000 0.00 0.00 0.00 3.95
5289 8799 0.039911 ACTGAGCTACTCCCTCCGTT 59.960 55.000 0.00 0.00 0.00 4.44
5290 8800 0.917533 TACTGAGCTACTCCCTCCGT 59.082 55.000 0.00 0.00 32.64 4.69
5291 8801 1.883275 CATACTGAGCTACTCCCTCCG 59.117 57.143 0.00 0.00 0.00 4.63
5292 8802 1.616374 GCATACTGAGCTACTCCCTCC 59.384 57.143 0.00 0.00 0.00 4.30
5293 8803 2.593026 AGCATACTGAGCTACTCCCTC 58.407 52.381 0.00 0.00 41.32 4.30
5294 8804 2.765689 AGCATACTGAGCTACTCCCT 57.234 50.000 0.00 0.00 41.32 4.20
5295 8805 4.770010 AGATAAGCATACTGAGCTACTCCC 59.230 45.833 0.00 0.00 42.53 4.30
5296 8806 5.710099 AGAGATAAGCATACTGAGCTACTCC 59.290 44.000 0.00 0.00 42.53 3.85
5297 8807 6.817765 AGAGATAAGCATACTGAGCTACTC 57.182 41.667 0.00 0.00 42.53 2.59
5298 8808 7.942341 ACTAAGAGATAAGCATACTGAGCTACT 59.058 37.037 0.00 0.00 42.53 2.57
5299 8809 8.106247 ACTAAGAGATAAGCATACTGAGCTAC 57.894 38.462 0.00 0.00 42.53 3.58
5549 9065 8.999431 GTTTATACAGATCACAAGAAAGAACCA 58.001 33.333 0.00 0.00 0.00 3.67
5580 9096 1.134699 GTCCTGAATCGACCTGATGCA 60.135 52.381 0.00 0.00 40.55 3.96
5662 9179 4.629200 GCAGCCATATCTATACTTGCTGAC 59.371 45.833 12.32 0.95 45.64 3.51
5688 9205 1.084370 GCCATCGGTTCGAGTTCAGG 61.084 60.000 0.00 0.00 39.91 3.86
5777 9300 2.121963 ACCTGGGAGGAAGCACCA 60.122 61.111 0.00 0.00 37.67 4.17
5817 9340 3.079578 AGGAGAACGACACGTATTCTGA 58.920 45.455 7.92 0.00 39.99 3.27
5818 9341 3.119955 TGAGGAGAACGACACGTATTCTG 60.120 47.826 7.92 0.00 39.99 3.02
5921 9444 1.202114 GGTCCACGACACCACGTATAA 59.798 52.381 0.00 0.00 44.76 0.98
5948 9475 2.280797 TCGGTGGCTTCAGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
6307 9872 1.605058 AAGCGTATGCCGTGGTCTCT 61.605 55.000 2.51 0.00 44.31 3.10
6443 10014 7.458038 AACAAATTAAACGAGCGAAAAATGT 57.542 28.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.