AutoCloner

Multiple sequence alignment - TraesCS3D01G255400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G255400	chr3D	100.000	3377	0	0	1	3377	357140104	357143480	0.000000e+00	6237.0
1	TraesCS3D01G255400	chr3B	92.418	3429	118	58	1	3376	458341743	458345082	0.000000e+00	4761.0
2	TraesCS3D01G255400	chr3A	92.261	1809	73	28	1360	3122	476385440	476387227	0.000000e+00	2503.0
3	TraesCS3D01G255400	chr3A	89.942	865	34	20	443	1282	476384550	476385386	0.000000e+00	1066.0
4	TraesCS3D01G255400	chr3A	92.097	329	23	3	77	405	476384225	476384550	8.540000e-126	460.0
5	TraesCS3D01G255400	chr3A	93.421	76	3	2	3242	3315	476387252	476387327	9.910000e-21	111.0
6	TraesCS3D01G255400	chr1D	88.489	139	13	2	1611	1746	449923210	449923072	7.500000e-37	165.0
7	TraesCS3D01G255400	chr1D	89.062	128	14	0	1611	1738	449660776	449660903	3.490000e-35	159.0
8	TraesCS3D01G255400	chr1D	87.302	126	13	3	1148	1273	449752656	449752778	1.260000e-29	141.0
9	TraesCS3D01G255400	chr1D	86.992	123	16	0	1151	1273	449846865	449846987	4.540000e-29	139.0
10	TraesCS3D01G255400	chr1D	86.992	123	16	0	1151	1273	449983416	449983294	4.540000e-29	139.0
11	TraesCS3D01G255400	chr1D	85.827	127	16	2	1944	2069	449922838	449922713	2.110000e-27	134.0
12	TraesCS3D01G255400	chr1B	89.683	126	13	0	1611	1736	615626010	615626135	9.700000e-36	161.0
13	TraesCS3D01G255400	chr1B	87.857	140	12	4	1611	1746	615744800	615744662	3.490000e-35	159.0
14	TraesCS3D01G255400	chr1B	88.618	123	14	0	1151	1273	615732181	615732303	2.100000e-32	150.0
15	TraesCS3D01G255400	chr1B	90.909	110	10	0	1164	1273	615581769	615581878	7.550000e-32	148.0
16	TraesCS3D01G255400	chr1B	86.992	123	16	0	1151	1273	615625643	615625765	4.540000e-29	139.0
17	TraesCS3D01G255400	chr1B	84.921	126	17	2	1943	2067	615744429	615744305	3.540000e-25	126.0
18	TraesCS3D01G255400	chr1B	83.465	127	19	2	1944	2069	616565335	616565210	2.130000e-22	117.0
19	TraesCS3D01G255400	chr1A	89.062	128	14	0	1611	1738	545009109	545008982	3.490000e-35	159.0
20	TraesCS3D01G255400	chr1A	88.976	127	14	0	1611	1737	545024895	545024769	1.250000e-34	158.0
21	TraesCS3D01G255400	chr1A	89.431	123	13	0	1151	1273	544748316	544748438	4.510000e-34	156.0
22	TraesCS3D01G255400	chr1A	88.889	126	14	0	1613	1738	545000601	545000726	4.510000e-34	156.0
23	TraesCS3D01G255400	chr1A	86.614	127	15	2	1943	2068	545008729	545008604	4.540000e-29	139.0
24	TraesCS3D01G255400	chr1A	84.921	126	17	2	1943	2067	545000970	545001094	3.540000e-25	126.0
25	TraesCS3D01G255400	chr1A	96.000	75	3	0	1944	2018	544928567	544928641	4.580000e-24	122.0
26	TraesCS3D01G255400	chr1A	84.252	127	18	2	1944	2069	545298885	545298760	4.580000e-24	122.0
27	TraesCS3D01G255400	chr7B	93.750	80	3	1	3300	3377	596287461	596287540	5.920000e-23	119.0
28	TraesCS3D01G255400	chr4B	93.750	80	3	1	3300	3377	294099372	294099293	5.920000e-23	119.0
29	TraesCS3D01G255400	chr4D	80.147	136	25	2	1390	1524	381404267	381404133	2.140000e-17	100.0
30	TraesCS3D01G255400	chr6D	90.411	73	7	0	1390	1462	383745327	383745255	2.770000e-16	97.1
31	TraesCS3D01G255400	chr6D	81.905	105	16	3	1392	1496	352835664	352835765	6.000000e-13	86.1
32	TraesCS3D01G255400	chr6A	89.610	77	7	1	1387	1462	525992380	525992304	2.770000e-16	97.1
33	TraesCS3D01G255400	chr6A	84.946	93	11	3	1404	1496	490301939	490302028	1.290000e-14	91.6
34	TraesCS3D01G255400	chr6B	84.946	93	11	3	1404	1496	526101147	526101058	1.290000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G255400	chr3D	357140104	357143480	3376	False	6237	6237	100.00000	1	3377	1	chr3D.!!$F1	3376
1	TraesCS3D01G255400	chr3B	458341743	458345082	3339	False	4761	4761	92.41800	1	3376	1	chr3B.!!$F1	3375
2	TraesCS3D01G255400	chr3A	476384225	476387327	3102	False	1035	2503	91.93025	77	3315	4	chr3A.!!$F1	3238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
863	880	0.043396	CGCACACACACTTACACACG	60.043	55.0	0.0	0.0	0.00	4.49	F
1599	1658	0.373716	GCGAATTGCTGACTAACGGG	59.626	55.0	0.0	0.0	41.73	5.28	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1833	1892	0.250338	GAAAGGGTCGAACACCTGCT	60.250	55.0	1.31	0.0	45.95	4.24	R
3031	3121	0.099259	CGCGCCATCACATCACATTT	59.901	50.0	0.00	0.0	0.00	2.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	0.044855	ATGAGGTCCTGGTTAGCCCT	59.955	55.000	0.00	0.00	0.00	5.19
63	64	2.038837	GTTAGCCCTCGTTGGTGCC	61.039	63.158	6.90	0.00	34.06	5.01
64	65	2.521451	TTAGCCCTCGTTGGTGCCA	61.521	57.895	0.00	0.00	34.06	4.92
107	108	1.961793	TGTGGTTGCGCTACTCTTTT	58.038	45.000	20.87	0.00	0.00	2.27
109	110	2.143925	GTGGTTGCGCTACTCTTTTCT	58.856	47.619	20.87	0.00	0.00	2.52
128	129	8.917088	TCTTTTCTCTCCAAAATTGACTGATTT	58.083	29.630	0.00	0.00	0.00	2.17
165	166	1.949525	GCATGATGAATTACACGGGCT	59.050	47.619	0.00	0.00	0.00	5.19
182	183	2.030096	GGGCTAATACGACCTCTGCTAC	60.030	54.545	0.00	0.00	0.00	3.58
264	265	4.317139	CGTCAGTTTGTCACAGTTAACGAG	60.317	45.833	0.00	0.00	0.00	4.18
295	296	3.411446	GCACGATGGGATCATCCATTTA	58.589	45.455	5.89	0.00	46.67	1.40
477	480	1.085091	GCAGAGAGCACAGATGTTGG	58.915	55.000	0.00	0.00	44.79	3.77
486	492	4.469657	AGCACAGATGTTGGGTTTTTCTA	58.530	39.130	0.00	0.00	30.75	2.10
487	493	5.079643	AGCACAGATGTTGGGTTTTTCTAT	58.920	37.500	0.00	0.00	30.75	1.98
640	655	1.144057	CTGTAGCGTTGGGCCCTAG	59.856	63.158	25.70	15.24	45.17	3.02
650	665	0.559205	TGGGCCCTAGTCGATTCCTA	59.441	55.000	25.70	0.00	0.00	2.94
739	754	2.038269	CCGCACGCACCCAACTATT	61.038	57.895	0.00	0.00	0.00	1.73
745	760	2.093658	CACGCACCCAACTATTAGGAGT	60.094	50.000	0.00	0.00	0.00	3.85
800	816	0.320073	CGGAGCACAAGTAAACGGGA	60.320	55.000	0.00	0.00	0.00	5.14
863	880	0.043396	CGCACACACACTTACACACG	60.043	55.000	0.00	0.00	0.00	4.49
864	881	1.003851	GCACACACACTTACACACGT	58.996	50.000	0.00	0.00	0.00	4.49
865	882	1.005347	GCACACACACTTACACACGTC	60.005	52.381	0.00	0.00	0.00	4.34
866	883	1.591158	CACACACACTTACACACGTCC	59.409	52.381	0.00	0.00	0.00	4.79
875	892	1.730501	TACACACGTCCTACTCCTCG	58.269	55.000	0.00	0.00	0.00	4.63
978	1004	2.027561	GCACGCTTCCCCATATATACCA	60.028	50.000	0.00	0.00	0.00	3.25
1011	1037	5.021033	TCCCGACCGAGATAGATAGATAC	57.979	47.826	0.00	0.00	0.00	2.24
1013	1039	4.571580	CCCGACCGAGATAGATAGATACAC	59.428	50.000	0.00	0.00	0.00	2.90
1029	1066	0.678366	ACACAGGCAACGAACCAACA	60.678	50.000	0.00	0.00	46.39	3.33
1030	1067	0.453793	CACAGGCAACGAACCAACAA	59.546	50.000	0.00	0.00	46.39	2.83
1031	1068	0.454196	ACAGGCAACGAACCAACAAC	59.546	50.000	0.00	0.00	46.39	3.32
1542	1601	3.965347	AGGTACATACATTACGCCTTCCT	59.035	43.478	0.00	0.00	0.00	3.36
1592	1651	2.160219	TGACATCTTGCGAATTGCTGAC	59.840	45.455	0.00	0.00	46.63	3.51
1593	1652	2.417933	GACATCTTGCGAATTGCTGACT	59.582	45.455	0.00	0.00	46.63	3.41
1599	1658	0.373716	GCGAATTGCTGACTAACGGG	59.626	55.000	0.00	0.00	41.73	5.28
1600	1659	2.004583	CGAATTGCTGACTAACGGGA	57.995	50.000	0.00	0.00	0.00	5.14
1774	1833	4.754667	GAACCCGACCAGGCGTCC	62.755	72.222	0.00	0.00	38.36	4.79
2291	2355	5.967088	AGATTAGCGACTGTACTTTGTCAT	58.033	37.500	12.22	5.31	33.18	3.06
2393	2461	8.910351	ATGGCTGAAATAAGAGGTATAGAAAC	57.090	34.615	0.00	0.00	0.00	2.78
2432	2500	5.946942	TTACCATGAGATTCTGCTCTCTT	57.053	39.130	0.00	0.00	41.87	2.85
2434	2502	5.176741	ACCATGAGATTCTGCTCTCTTTT	57.823	39.130	0.00	0.00	41.87	2.27
2435	2503	5.568392	ACCATGAGATTCTGCTCTCTTTTT	58.432	37.500	0.00	0.00	41.87	1.94
2436	2504	6.715280	ACCATGAGATTCTGCTCTCTTTTTA	58.285	36.000	0.00	0.00	41.87	1.52
2489	2559	2.808543	CTCTTTTGCTCGGTAAGTTGCT	59.191	45.455	0.00	0.00	0.00	3.91
2490	2560	3.994392	CTCTTTTGCTCGGTAAGTTGCTA	59.006	43.478	0.00	0.00	0.00	3.49
2491	2561	3.744426	TCTTTTGCTCGGTAAGTTGCTAC	59.256	43.478	0.00	0.00	0.00	3.58
2492	2562	3.396260	TTTGCTCGGTAAGTTGCTACT	57.604	42.857	0.00	0.00	35.68	2.57
2499	2569	5.461407	GCTCGGTAAGTTGCTACTTATTACC	59.539	44.000	20.94	18.68	45.80	2.85
2548	2618	3.742433	AGGAGAAACTATCATGGCTCG	57.258	47.619	0.00	0.00	0.00	5.03
2558	2633	5.853936	ACTATCATGGCTCGTGCTAATTTA	58.146	37.500	9.61	0.00	39.59	1.40
2562	2637	4.751600	TCATGGCTCGTGCTAATTTATCTG	59.248	41.667	9.61	0.00	39.59	2.90
2592	2668	3.939592	GCCGTCCTGTATTAGCTTCTTTT	59.060	43.478	0.00	0.00	0.00	2.27
2614	2696	5.682943	TTTCCCTTGATTTGTGTCTAACG	57.317	39.130	0.00	0.00	0.00	3.18
2654	2736	5.860941	AGATGCTGCTGTTACAGTACTAT	57.139	39.130	14.23	4.54	39.96	2.12
2655	2737	6.961360	AGATGCTGCTGTTACAGTACTATA	57.039	37.500	14.23	0.00	39.96	1.31
2791	2873	6.127026	TGGTGTTAGCTTGTAACCCAATTTTT	60.127	34.615	0.00	0.00	31.20	1.94
2793	2875	7.207383	GTGTTAGCTTGTAACCCAATTTTTCT	58.793	34.615	0.00	0.00	31.20	2.52
3031	3121	6.800892	GCGGACCGTAATTTATTTTGTTTACA	59.199	34.615	16.73	0.00	0.00	2.41
3067	3174	1.735386	GCGCAGAGCCATGATATGAT	58.265	50.000	0.30	0.00	40.81	2.45
3124	3231	1.379443	ACTGCACATGATGGCTGGG	60.379	57.895	0.00	0.00	33.82	4.45
3128	3235	0.966875	GCACATGATGGCTGGGAACA	60.967	55.000	0.00	0.00	39.59	3.18
3129	3236	1.771565	CACATGATGGCTGGGAACAT	58.228	50.000	0.00	0.00	41.51	2.71
3137	3244	0.186873	GGCTGGGAACATCCATCCAT	59.813	55.000	0.00	0.00	46.09	3.41
3144	3260	3.070018	GGAACATCCATCCATCATCGTC	58.930	50.000	0.00	0.00	36.28	4.20
3158	3274	5.506815	CCATCATCGTCCTTCAAATCCAATG	60.507	44.000	0.00	0.00	0.00	2.82
3182	3298	3.580895	GGATTTTCAGGGGGCTGTAAAAA	59.419	43.478	0.00	0.00	29.90	1.94
3184	3300	2.302587	TTCAGGGGGCTGTAAAAAGG	57.697	50.000	0.00	0.00	0.00	3.11
3203	3320	4.986708	GCCAAAACGGAGGGGCCA	62.987	66.667	4.39	0.00	40.55	5.36
3376	3493	1.526917	CTGGCATCGTTCCATCCCC	60.527	63.158	0.00	0.00	32.37	4.81

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	129	7.392418	TCATCATGCAATTGGGAAACAAATTA	58.608	30.769	7.72	0.00	43.46	1.40
138	139	4.741185	CGTGTAATTCATCATGCAATTGGG	59.259	41.667	7.72	0.00	0.00	4.12
189	190	3.251004	GGCACATCGTCATAGGGAATTTC	59.749	47.826	0.00	0.00	0.00	2.17
193	194	0.104120	CGGCACATCGTCATAGGGAA	59.896	55.000	0.00	0.00	0.00	3.97
264	265	2.279517	CATCGTGCCTCCCTACGC	60.280	66.667	0.00	0.00	39.94	4.42
295	296	6.484643	CGTTCCATCTATCCATCTTGATTTGT	59.515	38.462	0.00	0.00	0.00	2.83
477	480	5.739161	CGACAATGCAAGCTATAGAAAAACC	59.261	40.000	3.21	0.00	0.00	3.27
573	588	4.461198	GGTTAGTTGGATTGGAGGTATGG	58.539	47.826	0.00	0.00	0.00	2.74
609	624	3.535561	ACGCTACAGGATGGAAAATGAG	58.464	45.455	0.00	0.00	43.62	2.90
640	655	1.292541	GCCGGGGATAGGAATCGAC	59.707	63.158	2.18	0.00	32.44	4.20
650	665	4.779733	AGAGACACGGCCGGGGAT	62.780	66.667	34.23	20.52	0.00	3.85
759	774	5.009010	CCGTAGGCTTAGGATTTTCGTACTA	59.991	44.000	0.00	0.00	46.14	1.82
760	775	4.202090	CCGTAGGCTTAGGATTTTCGTACT	60.202	45.833	0.00	0.00	46.14	2.73
761	776	4.047142	CCGTAGGCTTAGGATTTTCGTAC	58.953	47.826	0.00	0.00	46.14	3.67
800	816	5.579753	ATGGATTGGAGCTCAAGATACAT	57.420	39.130	17.19	14.37	38.95	2.29
875	892	0.615850	AGGTCTCAAGCAACCTAGCC	59.384	55.000	0.00	0.00	44.12	3.93
1011	1037	0.453793	TTGTTGGTTCGTTGCCTGTG	59.546	50.000	0.00	0.00	0.00	3.66
1013	1039	0.248866	GGTTGTTGGTTCGTTGCCTG	60.249	55.000	0.00	0.00	0.00	4.85
1029	1066	1.048601	ACCTCGTCAGTGTGATGGTT	58.951	50.000	0.00	0.00	34.27	3.67
1030	1067	1.819288	CTACCTCGTCAGTGTGATGGT	59.181	52.381	0.00	0.00	34.27	3.55
1031	1068	1.469940	GCTACCTCGTCAGTGTGATGG	60.470	57.143	0.00	0.00	34.27	3.51
1289	1338	0.603975	GGGGAGAGAAGTGTGTGTGC	60.604	60.000	0.00	0.00	0.00	4.57
1337	1392	4.565564	ACGGTTGTTAGATTAGAACGATGC	59.434	41.667	0.00	0.00	0.00	3.91
1343	1398	3.680937	CGCCAACGGTTGTTAGATTAGAA	59.319	43.478	18.73	0.00	36.28	2.10
1417	1476	3.700970	TTGATCCACCGCAGCCGA	61.701	61.111	0.00	0.00	36.29	5.54
1592	1651	1.865865	CATTGATCCCGTCCCGTTAG	58.134	55.000	0.00	0.00	0.00	2.34
1593	1652	0.179067	GCATTGATCCCGTCCCGTTA	60.179	55.000	0.00	0.00	0.00	3.18
1599	1658	1.097547	CCACCTGCATTGATCCCGTC	61.098	60.000	0.00	0.00	0.00	4.79
1600	1659	1.077501	CCACCTGCATTGATCCCGT	60.078	57.895	0.00	0.00	0.00	5.28
1604	1663	1.026182	TGCGACCACCTGCATTGATC	61.026	55.000	0.00	0.00	35.90	2.92
1754	1813	4.323477	CGCCTGGTCGGGTTCCAA	62.323	66.667	0.00	0.00	34.35	3.53
1774	1833	2.048222	TGCGGCCTCTCGTCTTTG	60.048	61.111	0.00	0.00	0.00	2.77
1832	1891	0.535102	AAAGGGTCGAACACCTGCTG	60.535	55.000	1.31	0.00	45.95	4.41
1833	1892	0.250338	GAAAGGGTCGAACACCTGCT	60.250	55.000	1.31	0.00	45.95	4.24
1834	1893	1.235281	GGAAAGGGTCGAACACCTGC	61.235	60.000	1.31	0.22	45.95	4.85
1835	1894	0.605589	GGGAAAGGGTCGAACACCTG	60.606	60.000	1.31	0.00	45.95	4.00
1836	1895	1.759236	GGGAAAGGGTCGAACACCT	59.241	57.895	1.31	0.00	45.95	4.00
1837	1896	1.670083	CGGGAAAGGGTCGAACACC	60.670	63.158	1.31	0.00	45.97	4.16
2023	2082	4.838152	GCATTGCTCGCCTCCGGA	62.838	66.667	2.93	2.93	34.56	5.14
2367	2435	9.998106	GTTTCTATACCTCTTATTTCAGCCATA	57.002	33.333	0.00	0.00	0.00	2.74
2368	2436	7.657761	CGTTTCTATACCTCTTATTTCAGCCAT	59.342	37.037	0.00	0.00	0.00	4.40
2369	2437	6.984474	CGTTTCTATACCTCTTATTTCAGCCA	59.016	38.462	0.00	0.00	0.00	4.75
2393	2461	6.367695	TCATGGTAAATTACAGAGTGTTCACG	59.632	38.462	5.45	0.00	0.00	4.35
2489	2559	7.913789	ACACACAATCTTCCAGGTAATAAGTA	58.086	34.615	0.00	0.00	0.00	2.24
2490	2560	6.779860	ACACACAATCTTCCAGGTAATAAGT	58.220	36.000	0.00	0.00	0.00	2.24
2491	2561	7.174946	ACAACACACAATCTTCCAGGTAATAAG	59.825	37.037	0.00	0.00	0.00	1.73
2492	2562	7.001674	ACAACACACAATCTTCCAGGTAATAA	58.998	34.615	0.00	0.00	0.00	1.40
2499	2569	5.947228	ATACACAACACACAATCTTCCAG	57.053	39.130	0.00	0.00	0.00	3.86
2548	2618	3.248602	CGACCTGCCAGATAAATTAGCAC	59.751	47.826	0.00	0.00	0.00	4.40
2592	2668	5.369833	TCGTTAGACACAAATCAAGGGAAA	58.630	37.500	0.00	0.00	0.00	3.13
2594	2670	4.610605	TCGTTAGACACAAATCAAGGGA	57.389	40.909	0.00	0.00	0.00	4.20
2614	2696	6.308282	CAGCATCTTTCTTTCTCATTGCTTTC	59.692	38.462	0.00	0.00	37.10	2.62
2654	2736	4.517285	CAGCTGCTCCTAATTCCAACTTA	58.483	43.478	0.00	0.00	0.00	2.24
2655	2737	3.350833	CAGCTGCTCCTAATTCCAACTT	58.649	45.455	0.00	0.00	0.00	2.66
2937	3027	2.237893	GGTTCCGTAGAAAGGAATCCCA	59.762	50.000	0.00	0.00	43.02	4.37
3005	3095	4.006026	ACAAAATAAATTACGGTCCGCG	57.994	40.909	12.28	0.00	0.00	6.46
3031	3121	0.099259	CGCGCCATCACATCACATTT	59.901	50.000	0.00	0.00	0.00	2.32
3067	3174	2.343758	GCGGTCAGAGTCTTGGCA	59.656	61.111	0.00	0.00	0.00	4.92
3124	3231	3.070018	GGACGATGATGGATGGATGTTC	58.930	50.000	0.00	0.00	0.00	3.18
3128	3235	2.974794	TGAAGGACGATGATGGATGGAT	59.025	45.455	0.00	0.00	0.00	3.41
3129	3236	2.397597	TGAAGGACGATGATGGATGGA	58.602	47.619	0.00	0.00	0.00	3.41
3131	3238	4.214971	GGATTTGAAGGACGATGATGGATG	59.785	45.833	0.00	0.00	0.00	3.51
3132	3239	4.141413	TGGATTTGAAGGACGATGATGGAT	60.141	41.667	0.00	0.00	0.00	3.41
3133	3240	3.199727	TGGATTTGAAGGACGATGATGGA	59.800	43.478	0.00	0.00	0.00	3.41
3137	3244	4.395854	CACATTGGATTTGAAGGACGATGA	59.604	41.667	0.00	0.00	0.00	2.92
3158	3274	0.251787	ACAGCCCCCTGAAAATCCAC	60.252	55.000	0.00	0.00	41.77	4.02
3166	3282	1.154430	ACCTTTTTACAGCCCCCTGA	58.846	50.000	0.00	0.00	41.77	3.86
3167	3283	1.256812	CACCTTTTTACAGCCCCCTG	58.743	55.000	0.00	0.00	44.80	4.45
3168	3284	0.541998	GCACCTTTTTACAGCCCCCT	60.542	55.000	0.00	0.00	0.00	4.79
3169	3285	1.541310	GGCACCTTTTTACAGCCCCC	61.541	60.000	0.00	0.00	39.42	5.40
3182	3298	2.115266	CCCTCCGTTTTGGCACCT	59.885	61.111	0.00	0.00	37.80	4.00
3184	3300	3.680786	GCCCCTCCGTTTTGGCAC	61.681	66.667	0.00	0.00	43.46	5.01
3203	3320	3.842925	AACACGCAACCCGATGGCT	62.843	57.895	0.00	0.00	41.02	4.75
3211	3328	1.269051	CCTTCTTTGGAACACGCAACC	60.269	52.381	0.00	0.00	39.29	3.77
3302	3419	2.332063	ACCACTAGCATGTATGGTGC	57.668	50.000	10.34	0.00	43.88	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.