Multiple sequence alignment - TraesCS3D01G255100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G255100 chr3D 100.000 5448 0 0 1 5448 356828838 356823391 0.000000e+00 10061.0
1 TraesCS3D01G255100 chr3D 90.909 660 32 9 1 637 103713480 103712826 0.000000e+00 861.0
2 TraesCS3D01G255100 chr3A 96.605 4212 89 13 730 4929 475722587 475718418 0.000000e+00 6937.0
3 TraesCS3D01G255100 chr3A 100.000 28 0 0 5226 5253 121332083 121332110 1.000000e-02 52.8
4 TraesCS3D01G255100 chr3B 97.828 2440 42 3 730 3169 457971225 457968797 0.000000e+00 4202.0
5 TraesCS3D01G255100 chr3B 96.110 1774 34 14 3168 4929 457968683 457966933 0.000000e+00 2861.0
6 TraesCS3D01G255100 chr3B 98.305 354 3 2 651 1004 457971665 457971315 7.750000e-173 617.0
7 TraesCS3D01G255100 chr1D 93.202 662 20 5 1 639 10656854 10657513 0.000000e+00 950.0
8 TraesCS3D01G255100 chr1D 92.378 656 26 5 1 633 7846360 7845706 0.000000e+00 913.0
9 TraesCS3D01G255100 chr1D 79.854 412 61 19 978 1376 449457810 449457408 1.160000e-71 281.0
10 TraesCS3D01G255100 chr1D 76.823 384 67 16 1643 2016 449457142 449456771 4.310000e-46 196.0
11 TraesCS3D01G255100 chr4D 92.868 659 24 3 1 636 480852275 480851617 0.000000e+00 935.0
12 TraesCS3D01G255100 chr2D 92.977 655 24 3 1 633 450449221 450448567 0.000000e+00 935.0
13 TraesCS3D01G255100 chr2D 91.390 662 27 11 1 634 9516592 9515933 0.000000e+00 880.0
14 TraesCS3D01G255100 chr7D 92.308 663 22 12 1 635 108617064 108616403 0.000000e+00 915.0
15 TraesCS3D01G255100 chr7D 92.261 659 25 4 1 633 79171472 79170814 0.000000e+00 911.0
16 TraesCS3D01G255100 chr7D 91.945 658 29 5 1 635 39581731 39581075 0.000000e+00 900.0
17 TraesCS3D01G255100 chr7D 77.707 471 87 15 1 463 25578332 25578792 6.950000e-69 272.0
18 TraesCS3D01G255100 chr2A 91.033 658 35 4 1 635 334602791 334602135 0.000000e+00 867.0
19 TraesCS3D01G255100 chr6D 90.091 656 33 10 1 633 75866318 75866964 0.000000e+00 822.0
20 TraesCS3D01G255100 chr5A 91.418 536 24 8 121 634 705939494 705940029 0.000000e+00 715.0
21 TraesCS3D01G255100 chr5A 79.102 646 97 28 1 634 584066513 584067132 1.410000e-110 411.0
22 TraesCS3D01G255100 chr5D 82.126 649 80 26 1 640 324914128 324913507 1.740000e-144 523.0
23 TraesCS3D01G255100 chr2B 78.538 643 111 21 1 636 37563392 37564014 1.100000e-106 398.0
24 TraesCS3D01G255100 chr2B 88.732 71 5 2 5254 5321 489480910 489480980 3.500000e-12 84.2
25 TraesCS3D01G255100 chr1B 80.097 412 54 24 978 1376 615113108 615112712 1.160000e-71 281.0
26 TraesCS3D01G255100 chr1A 79.950 404 56 21 978 1376 544588480 544588097 1.930000e-69 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G255100 chr3D 356823391 356828838 5447 True 10061.0 10061 100.000000 1 5448 1 chr3D.!!$R2 5447
1 TraesCS3D01G255100 chr3D 103712826 103713480 654 True 861.0 861 90.909000 1 637 1 chr3D.!!$R1 636
2 TraesCS3D01G255100 chr3A 475718418 475722587 4169 True 6937.0 6937 96.605000 730 4929 1 chr3A.!!$R1 4199
3 TraesCS3D01G255100 chr3B 457966933 457971665 4732 True 2560.0 4202 97.414333 651 4929 3 chr3B.!!$R1 4278
4 TraesCS3D01G255100 chr1D 10656854 10657513 659 False 950.0 950 93.202000 1 639 1 chr1D.!!$F1 638
5 TraesCS3D01G255100 chr1D 7845706 7846360 654 True 913.0 913 92.378000 1 633 1 chr1D.!!$R1 632
6 TraesCS3D01G255100 chr1D 449456771 449457810 1039 True 238.5 281 78.338500 978 2016 2 chr1D.!!$R2 1038
7 TraesCS3D01G255100 chr4D 480851617 480852275 658 True 935.0 935 92.868000 1 636 1 chr4D.!!$R1 635
8 TraesCS3D01G255100 chr2D 450448567 450449221 654 True 935.0 935 92.977000 1 633 1 chr2D.!!$R2 632
9 TraesCS3D01G255100 chr2D 9515933 9516592 659 True 880.0 880 91.390000 1 634 1 chr2D.!!$R1 633
10 TraesCS3D01G255100 chr7D 108616403 108617064 661 True 915.0 915 92.308000 1 635 1 chr7D.!!$R3 634
11 TraesCS3D01G255100 chr7D 79170814 79171472 658 True 911.0 911 92.261000 1 633 1 chr7D.!!$R2 632
12 TraesCS3D01G255100 chr7D 39581075 39581731 656 True 900.0 900 91.945000 1 635 1 chr7D.!!$R1 634
13 TraesCS3D01G255100 chr2A 334602135 334602791 656 True 867.0 867 91.033000 1 635 1 chr2A.!!$R1 634
14 TraesCS3D01G255100 chr6D 75866318 75866964 646 False 822.0 822 90.091000 1 633 1 chr6D.!!$F1 632
15 TraesCS3D01G255100 chr5A 705939494 705940029 535 False 715.0 715 91.418000 121 634 1 chr5A.!!$F2 513
16 TraesCS3D01G255100 chr5A 584066513 584067132 619 False 411.0 411 79.102000 1 634 1 chr5A.!!$F1 633
17 TraesCS3D01G255100 chr5D 324913507 324914128 621 True 523.0 523 82.126000 1 640 1 chr5D.!!$R1 639
18 TraesCS3D01G255100 chr2B 37563392 37564014 622 False 398.0 398 78.538000 1 636 1 chr2B.!!$F1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 441 0.107831 TGGCGGTCATGTAATAGGGC 59.892 55.000 0.00 0.0 0.00 5.19 F
420 443 1.271379 GGCGGTCATGTAATAGGGCAT 60.271 52.381 0.00 0.0 0.00 4.40 F
2286 2759 1.227383 GGGCCATAGGGTGTTCTGG 59.773 63.158 4.39 0.0 36.17 3.86 F
2579 3052 0.689055 AGGCATTGAGCTGTGAGTGA 59.311 50.000 0.00 0.0 44.79 3.41 F
4047 4638 0.727398 GCAAAGTGAGTATGGCCGAC 59.273 55.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 2212 2.794103 ACAGCATTTGTCACAGCCATA 58.206 42.857 0.00 0.0 33.87 2.74 R
2378 2851 3.253677 TCTGAGAACTCGTTCCTGAAGTC 59.746 47.826 6.20 0.0 40.33 3.01 R
3873 4464 1.888512 GTGCTGCAAATGAAGAGGGAA 59.111 47.619 2.77 0.0 0.00 3.97 R
4333 4924 4.243270 AGCGAACCTGTGAAGTACATAAC 58.757 43.478 0.00 0.0 38.92 1.89 R
5202 5804 0.032952 CCACAACGAGAACGAAGGGA 59.967 55.000 0.00 0.0 42.66 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
417 440 2.615493 GGATGGCGGTCATGTAATAGGG 60.615 54.545 0.00 0.00 35.97 3.53
418 441 0.107831 TGGCGGTCATGTAATAGGGC 59.892 55.000 0.00 0.00 0.00 5.19
420 443 1.271379 GGCGGTCATGTAATAGGGCAT 60.271 52.381 0.00 0.00 0.00 4.40
539 582 9.762933 TCCTTTTTATTTTCATTTGGAGACTTG 57.237 29.630 0.00 0.00 0.00 3.16
656 704 9.884636 AAAAACATTAGGTTCTTTTTAAGCAGT 57.115 25.926 0.00 0.00 39.29 4.40
659 707 9.569122 AACATTAGGTTCTTTTTAAGCAGTAGA 57.431 29.630 0.00 0.00 33.35 2.59
660 708 9.220767 ACATTAGGTTCTTTTTAAGCAGTAGAG 57.779 33.333 0.00 0.00 0.00 2.43
993 1405 2.586357 GAGATCCCACCGCGCTTC 60.586 66.667 5.56 0.00 0.00 3.86
1166 1592 1.739035 CGCAATCCTCAACGCCTCTAA 60.739 52.381 0.00 0.00 0.00 2.10
1216 1642 1.573026 TCGCGCTAAGTTGTTGTGAA 58.427 45.000 5.56 0.00 0.00 3.18
1445 1892 6.032460 GCGTCTAATTTGTTCATGTACTTTGC 59.968 38.462 4.01 0.00 0.00 3.68
2075 2548 8.219546 TGATAGTCTGAAATGTTTGTGTTGAA 57.780 30.769 0.00 0.00 0.00 2.69
2248 2721 6.923012 TGCATGTTCTTTTGCATACTATTGT 58.077 32.000 0.00 0.00 43.54 2.71
2286 2759 1.227383 GGGCCATAGGGTGTTCTGG 59.773 63.158 4.39 0.00 36.17 3.86
2395 2868 5.956642 AGATTAGACTTCAGGAACGAGTTC 58.043 41.667 7.40 7.40 38.80 3.01
2483 2956 2.161855 CTGTGCTGTTGGCCTTGATAA 58.838 47.619 3.32 0.00 40.92 1.75
2508 2981 9.908152 AACTTGTAGTTTACCTGAATTAAATGC 57.092 29.630 0.00 0.00 34.11 3.56
2579 3052 0.689055 AGGCATTGAGCTGTGAGTGA 59.311 50.000 0.00 0.00 44.79 3.41
2670 3143 7.512992 CCTGGAAGATGTTCTAAATCTGGTAT 58.487 38.462 2.24 0.00 34.59 2.73
2699 3172 8.582657 AAGATGAGTATACTAGCGATATTGGT 57.417 34.615 5.09 0.00 0.00 3.67
2700 3173 8.215926 AGATGAGTATACTAGCGATATTGGTC 57.784 38.462 5.09 0.00 0.00 4.02
2701 3174 8.050325 AGATGAGTATACTAGCGATATTGGTCT 58.950 37.037 5.09 0.00 0.00 3.85
2926 3402 0.824109 AGAGTATGCTGCGCTGGTAA 59.176 50.000 16.47 0.00 0.00 2.85
3045 3521 4.460948 AAGGCAGGCACAAATCATTTAG 57.539 40.909 0.00 0.00 0.00 1.85
3133 3609 7.504911 AGCATAACTGGAATATCAAGCTCATTT 59.495 33.333 0.00 0.00 0.00 2.32
3187 3778 7.641802 GCTTTATAGATTGCTAGACTTTGTTGC 59.358 37.037 0.00 0.00 0.00 4.17
3466 4057 6.406370 CCATCAAGTCTATTACACCAGAACA 58.594 40.000 0.00 0.00 0.00 3.18
4047 4638 0.727398 GCAAAGTGAGTATGGCCGAC 59.273 55.000 0.00 0.00 0.00 4.79
4074 4665 1.634973 TGAATCCATTGGCTCCTGTGA 59.365 47.619 0.00 0.00 0.00 3.58
4076 4667 2.653234 ATCCATTGGCTCCTGTGATC 57.347 50.000 0.00 0.00 0.00 2.92
4083 4674 1.007118 TGGCTCCTGTGATCCTAGTCA 59.993 52.381 0.00 0.00 0.00 3.41
4248 4839 4.039245 CACTGTATCGGGTATTCAGGTGAT 59.961 45.833 0.00 0.00 37.32 3.06
4333 4924 3.306166 CACCTCGAGTAAAAAGTATGGCG 59.694 47.826 12.31 0.00 0.00 5.69
4549 5140 3.403038 ACAGCGTATAGATGAATTGGGC 58.597 45.455 0.00 0.00 38.85 5.36
4756 5350 6.819146 TGTTTTTATTTCCTTTTGTCCCACAC 59.181 34.615 0.00 0.00 0.00 3.82
4757 5351 4.839668 TTATTTCCTTTTGTCCCACACG 57.160 40.909 0.00 0.00 0.00 4.49
4759 5353 0.547075 TTCCTTTTGTCCCACACGGA 59.453 50.000 0.00 0.00 38.83 4.69
4760 5354 0.547075 TCCTTTTGTCCCACACGGAA 59.453 50.000 0.00 0.00 44.47 4.30
4777 5371 7.128331 CACACGGAAAAATATAGAGCTGATTG 58.872 38.462 0.00 0.00 0.00 2.67
4778 5372 6.823689 ACACGGAAAAATATAGAGCTGATTGT 59.176 34.615 0.00 0.00 0.00 2.71
4780 5374 8.184192 CACGGAAAAATATAGAGCTGATTGTTT 58.816 33.333 0.00 0.00 0.00 2.83
4781 5375 8.739972 ACGGAAAAATATAGAGCTGATTGTTTT 58.260 29.630 0.00 0.00 0.00 2.43
4782 5376 9.013490 CGGAAAAATATAGAGCTGATTGTTTTG 57.987 33.333 0.00 0.00 0.00 2.44
4832 5433 4.522789 TGAAGTTTGGGTTGAAGCTATTCC 59.477 41.667 0.00 0.00 34.28 3.01
4843 5444 4.012374 TGAAGCTATTCCAGGCTTTTCTG 58.988 43.478 0.00 0.00 46.91 3.02
4863 5464 7.825331 TTCTGTAGTCTATAGAATGGTGGAG 57.175 40.000 12.86 2.16 32.05 3.86
4872 5473 3.728385 AGAATGGTGGAGGGAGAAAAG 57.272 47.619 0.00 0.00 0.00 2.27
4878 5479 2.891580 GGTGGAGGGAGAAAAGAAAACC 59.108 50.000 0.00 0.00 0.00 3.27
4891 5493 2.905075 AGAAAACCAAAAACAGCTGGC 58.095 42.857 19.93 0.00 36.03 4.85
4925 5527 1.218230 GCTCAACGCGATCCTCCATC 61.218 60.000 15.93 0.00 0.00 3.51
4929 5531 3.295273 CGCGATCCTCCATCCGGA 61.295 66.667 6.61 6.61 39.79 5.14
4930 5532 2.340443 GCGATCCTCCATCCGGAC 59.660 66.667 6.12 0.00 35.91 4.79
4931 5533 3.052081 CGATCCTCCATCCGGACC 58.948 66.667 6.12 0.00 35.91 4.46
4932 5534 1.531840 CGATCCTCCATCCGGACCT 60.532 63.158 6.12 0.00 35.91 3.85
4933 5535 1.528292 CGATCCTCCATCCGGACCTC 61.528 65.000 6.12 0.00 35.91 3.85
4934 5536 1.152226 ATCCTCCATCCGGACCTCC 60.152 63.158 6.12 0.00 35.91 4.30
4935 5537 1.669927 ATCCTCCATCCGGACCTCCT 61.670 60.000 6.12 0.00 35.91 3.69
4936 5538 1.834822 CCTCCATCCGGACCTCCTC 60.835 68.421 6.12 0.00 35.91 3.71
4937 5539 1.834822 CTCCATCCGGACCTCCTCC 60.835 68.421 6.12 0.00 35.91 4.30
4960 5562 4.203618 GGCTAACGAGACCTTGGC 57.796 61.111 0.00 0.00 0.00 4.52
4961 5563 1.295423 GGCTAACGAGACCTTGGCA 59.705 57.895 0.00 0.00 0.00 4.92
4962 5564 0.107654 GGCTAACGAGACCTTGGCAT 60.108 55.000 0.00 0.00 0.00 4.40
4963 5565 1.009829 GCTAACGAGACCTTGGCATG 58.990 55.000 0.00 0.00 0.00 4.06
4964 5566 1.405526 GCTAACGAGACCTTGGCATGA 60.406 52.381 0.00 0.00 0.00 3.07
4965 5567 2.743183 GCTAACGAGACCTTGGCATGAT 60.743 50.000 0.00 0.00 0.00 2.45
4966 5568 2.029838 AACGAGACCTTGGCATGATC 57.970 50.000 0.00 0.00 0.00 2.92
4967 5569 0.179100 ACGAGACCTTGGCATGATCG 60.179 55.000 15.62 15.62 35.00 3.69
4968 5570 1.493950 CGAGACCTTGGCATGATCGC 61.494 60.000 0.00 0.00 0.00 4.58
4976 5578 4.040068 GCATGATCGCCTCCTCAC 57.960 61.111 0.00 0.00 0.00 3.51
4977 5579 1.445095 GCATGATCGCCTCCTCACT 59.555 57.895 0.00 0.00 0.00 3.41
4978 5580 0.179062 GCATGATCGCCTCCTCACTT 60.179 55.000 0.00 0.00 0.00 3.16
4979 5581 1.579698 CATGATCGCCTCCTCACTTG 58.420 55.000 0.00 0.00 0.00 3.16
4980 5582 0.179062 ATGATCGCCTCCTCACTTGC 60.179 55.000 0.00 0.00 0.00 4.01
4981 5583 1.219124 GATCGCCTCCTCACTTGCA 59.781 57.895 0.00 0.00 0.00 4.08
4982 5584 0.179062 GATCGCCTCCTCACTTGCAT 60.179 55.000 0.00 0.00 0.00 3.96
4983 5585 0.179062 ATCGCCTCCTCACTTGCATC 60.179 55.000 0.00 0.00 0.00 3.91
4984 5586 1.220206 CGCCTCCTCACTTGCATCT 59.780 57.895 0.00 0.00 0.00 2.90
4985 5587 0.392193 CGCCTCCTCACTTGCATCTT 60.392 55.000 0.00 0.00 0.00 2.40
4986 5588 1.093159 GCCTCCTCACTTGCATCTTG 58.907 55.000 0.00 0.00 0.00 3.02
4987 5589 1.339438 GCCTCCTCACTTGCATCTTGA 60.339 52.381 0.00 0.00 0.00 3.02
4988 5590 2.630158 CCTCCTCACTTGCATCTTGAG 58.370 52.381 11.14 11.14 37.17 3.02
4989 5591 2.008329 CTCCTCACTTGCATCTTGAGC 58.992 52.381 12.21 0.00 36.26 4.26
4990 5592 1.348696 TCCTCACTTGCATCTTGAGCA 59.651 47.619 12.21 0.00 40.85 4.26
4991 5593 1.467734 CCTCACTTGCATCTTGAGCAC 59.532 52.381 12.21 0.00 42.54 4.40
4992 5594 2.424557 CTCACTTGCATCTTGAGCACT 58.575 47.619 6.76 0.00 42.54 4.40
4993 5595 2.415857 CTCACTTGCATCTTGAGCACTC 59.584 50.000 6.76 0.00 42.54 3.51
4994 5596 1.467734 CACTTGCATCTTGAGCACTCC 59.532 52.381 0.00 0.00 42.54 3.85
4995 5597 0.725686 CTTGCATCTTGAGCACTCCG 59.274 55.000 0.00 0.00 42.54 4.63
4996 5598 1.300971 TTGCATCTTGAGCACTCCGC 61.301 55.000 0.00 0.00 42.54 5.54
5005 5607 2.965783 GCACTCCGCTCTGAGACA 59.034 61.111 9.28 0.00 37.77 3.41
5006 5608 1.515020 GCACTCCGCTCTGAGACAT 59.485 57.895 9.28 0.00 37.77 3.06
5007 5609 0.527385 GCACTCCGCTCTGAGACATC 60.527 60.000 9.28 0.00 37.77 3.06
5008 5610 0.102120 CACTCCGCTCTGAGACATCC 59.898 60.000 9.28 0.00 36.22 3.51
5009 5611 0.033601 ACTCCGCTCTGAGACATCCT 60.034 55.000 9.28 0.00 36.22 3.24
5010 5612 1.213182 ACTCCGCTCTGAGACATCCTA 59.787 52.381 9.28 0.00 36.22 2.94
5011 5613 2.302260 CTCCGCTCTGAGACATCCTAA 58.698 52.381 9.28 0.00 34.11 2.69
5012 5614 2.293122 CTCCGCTCTGAGACATCCTAAG 59.707 54.545 9.28 0.00 34.11 2.18
5013 5615 1.269517 CCGCTCTGAGACATCCTAAGC 60.270 57.143 9.28 0.00 0.00 3.09
5014 5616 1.599171 CGCTCTGAGACATCCTAAGCG 60.599 57.143 9.28 0.00 40.00 4.68
5015 5617 1.407258 GCTCTGAGACATCCTAAGCGT 59.593 52.381 9.28 0.00 0.00 5.07
5016 5618 2.797792 GCTCTGAGACATCCTAAGCGTG 60.798 54.545 9.28 0.00 0.00 5.34
5017 5619 1.135139 TCTGAGACATCCTAAGCGTGC 59.865 52.381 0.00 0.00 0.00 5.34
5018 5620 1.135915 CTGAGACATCCTAAGCGTGCT 59.864 52.381 0.00 0.00 0.00 4.40
5019 5621 1.134995 TGAGACATCCTAAGCGTGCTG 60.135 52.381 0.00 0.00 0.00 4.41
5020 5622 1.135139 GAGACATCCTAAGCGTGCTGA 59.865 52.381 0.00 0.00 0.00 4.26
5021 5623 1.759445 AGACATCCTAAGCGTGCTGAT 59.241 47.619 0.00 0.00 0.00 2.90
5022 5624 1.863454 GACATCCTAAGCGTGCTGATG 59.137 52.381 15.24 15.24 38.94 3.07
5023 5625 0.585357 CATCCTAAGCGTGCTGATGC 59.415 55.000 7.46 0.00 40.20 3.91
5025 5627 0.460811 TCCTAAGCGTGCTGATGCTG 60.461 55.000 0.00 0.00 44.13 4.41
5026 5628 0.742281 CCTAAGCGTGCTGATGCTGT 60.742 55.000 0.00 0.00 44.13 4.40
5027 5629 0.372679 CTAAGCGTGCTGATGCTGTG 59.627 55.000 0.00 0.00 44.13 3.66
5028 5630 1.638388 TAAGCGTGCTGATGCTGTGC 61.638 55.000 0.00 0.00 44.13 4.57
5029 5631 3.429141 GCGTGCTGATGCTGTGCT 61.429 61.111 0.00 0.00 40.48 4.40
5030 5632 2.479198 CGTGCTGATGCTGTGCTG 59.521 61.111 0.00 0.00 40.48 4.41
5031 5633 2.322830 CGTGCTGATGCTGTGCTGT 61.323 57.895 0.00 0.00 40.48 4.40
5032 5634 1.209383 GTGCTGATGCTGTGCTGTG 59.791 57.895 0.00 0.00 40.48 3.66
5033 5635 1.071814 TGCTGATGCTGTGCTGTGA 59.928 52.632 0.00 0.00 40.48 3.58
5034 5636 0.322187 TGCTGATGCTGTGCTGTGAT 60.322 50.000 0.00 0.00 40.48 3.06
5035 5637 0.098905 GCTGATGCTGTGCTGTGATG 59.901 55.000 0.00 0.00 36.03 3.07
5036 5638 0.733150 CTGATGCTGTGCTGTGATGG 59.267 55.000 0.00 0.00 0.00 3.51
5037 5639 1.310216 TGATGCTGTGCTGTGATGGC 61.310 55.000 0.00 0.00 0.00 4.40
5038 5640 1.001269 ATGCTGTGCTGTGATGGCT 60.001 52.632 0.00 0.00 0.00 4.75
5039 5641 1.030488 ATGCTGTGCTGTGATGGCTC 61.030 55.000 0.00 0.00 0.00 4.70
5040 5642 2.747822 GCTGTGCTGTGATGGCTCG 61.748 63.158 0.00 0.00 0.00 5.03
5041 5643 2.743538 TGTGCTGTGATGGCTCGC 60.744 61.111 0.00 0.00 0.00 5.03
5042 5644 2.743538 GTGCTGTGATGGCTCGCA 60.744 61.111 0.00 0.00 39.54 5.10
5043 5645 2.743538 TGCTGTGATGGCTCGCAC 60.744 61.111 0.00 0.00 36.99 5.34
5044 5646 3.503363 GCTGTGATGGCTCGCACC 61.503 66.667 0.00 0.00 36.99 5.01
5045 5647 2.267006 CTGTGATGGCTCGCACCT 59.733 61.111 0.00 0.00 36.99 4.00
5046 5648 2.046988 TGTGATGGCTCGCACCTG 60.047 61.111 0.00 0.00 36.99 4.00
5047 5649 2.046892 GTGATGGCTCGCACCTGT 60.047 61.111 0.00 0.00 31.95 4.00
5048 5650 1.218047 GTGATGGCTCGCACCTGTA 59.782 57.895 0.00 0.00 31.95 2.74
5049 5651 0.391130 GTGATGGCTCGCACCTGTAA 60.391 55.000 0.00 0.00 31.95 2.41
5050 5652 0.541392 TGATGGCTCGCACCTGTAAT 59.459 50.000 0.00 0.00 0.00 1.89
5051 5653 1.065491 TGATGGCTCGCACCTGTAATT 60.065 47.619 0.00 0.00 0.00 1.40
5052 5654 1.599542 GATGGCTCGCACCTGTAATTC 59.400 52.381 0.00 0.00 0.00 2.17
5053 5655 0.613260 TGGCTCGCACCTGTAATTCT 59.387 50.000 0.00 0.00 0.00 2.40
5054 5656 1.828595 TGGCTCGCACCTGTAATTCTA 59.171 47.619 0.00 0.00 0.00 2.10
5055 5657 2.202566 GGCTCGCACCTGTAATTCTAC 58.797 52.381 0.00 0.00 0.00 2.59
5056 5658 2.418197 GGCTCGCACCTGTAATTCTACA 60.418 50.000 0.00 0.00 36.57 2.74
5057 5659 3.259064 GCTCGCACCTGTAATTCTACAA 58.741 45.455 0.00 0.00 37.58 2.41
5058 5660 3.682858 GCTCGCACCTGTAATTCTACAAA 59.317 43.478 0.00 0.00 37.58 2.83
5059 5661 4.201724 GCTCGCACCTGTAATTCTACAAAG 60.202 45.833 0.00 0.00 37.58 2.77
5060 5662 3.682858 TCGCACCTGTAATTCTACAAAGC 59.317 43.478 0.00 0.00 37.58 3.51
5061 5663 3.181510 CGCACCTGTAATTCTACAAAGCC 60.182 47.826 0.00 0.00 37.58 4.35
5062 5664 3.181510 GCACCTGTAATTCTACAAAGCCG 60.182 47.826 0.00 0.00 37.58 5.52
5063 5665 4.000988 CACCTGTAATTCTACAAAGCCGT 58.999 43.478 0.00 0.00 37.58 5.68
5064 5666 4.092968 CACCTGTAATTCTACAAAGCCGTC 59.907 45.833 0.00 0.00 37.58 4.79
5065 5667 4.020485 ACCTGTAATTCTACAAAGCCGTCT 60.020 41.667 0.00 0.00 37.58 4.18
5066 5668 4.567159 CCTGTAATTCTACAAAGCCGTCTC 59.433 45.833 0.00 0.00 37.58 3.36
5067 5669 4.501071 TGTAATTCTACAAAGCCGTCTCC 58.499 43.478 0.00 0.00 35.03 3.71
5068 5670 3.983044 AATTCTACAAAGCCGTCTCCT 57.017 42.857 0.00 0.00 0.00 3.69
5069 5671 2.743636 TTCTACAAAGCCGTCTCCTG 57.256 50.000 0.00 0.00 0.00 3.86
5070 5672 0.895530 TCTACAAAGCCGTCTCCTGG 59.104 55.000 0.00 0.00 0.00 4.45
5071 5673 0.895530 CTACAAAGCCGTCTCCTGGA 59.104 55.000 0.00 0.00 0.00 3.86
5072 5674 0.895530 TACAAAGCCGTCTCCTGGAG 59.104 55.000 17.84 17.84 0.00 3.86
5073 5675 0.832135 ACAAAGCCGTCTCCTGGAGA 60.832 55.000 22.30 22.30 36.22 3.71
5074 5676 0.539051 CAAAGCCGTCTCCTGGAGAT 59.461 55.000 27.96 10.59 40.98 2.75
5075 5677 1.757118 CAAAGCCGTCTCCTGGAGATA 59.243 52.381 27.96 5.29 40.98 1.98
5076 5678 1.698506 AAGCCGTCTCCTGGAGATAG 58.301 55.000 27.96 22.88 40.98 2.08
5077 5679 0.178975 AGCCGTCTCCTGGAGATAGG 60.179 60.000 30.77 30.77 40.98 2.57
5078 5680 2.346597 CCGTCTCCTGGAGATAGGC 58.653 63.158 27.96 14.71 40.98 3.93
5079 5681 1.519751 CCGTCTCCTGGAGATAGGCG 61.520 65.000 27.96 24.06 40.98 5.52
5080 5682 0.820074 CGTCTCCTGGAGATAGGCGT 60.820 60.000 27.96 0.00 40.98 5.68
5081 5683 0.671251 GTCTCCTGGAGATAGGCGTG 59.329 60.000 27.96 0.00 40.98 5.34
5082 5684 0.259065 TCTCCTGGAGATAGGCGTGT 59.741 55.000 22.30 0.00 37.76 4.49
5083 5685 0.671251 CTCCTGGAGATAGGCGTGTC 59.329 60.000 19.13 0.00 37.76 3.67
5084 5686 1.101635 TCCTGGAGATAGGCGTGTCG 61.102 60.000 0.00 0.00 37.76 4.35
5085 5687 1.384989 CCTGGAGATAGGCGTGTCGT 61.385 60.000 0.00 0.00 0.00 4.34
5086 5688 0.248661 CTGGAGATAGGCGTGTCGTG 60.249 60.000 0.00 0.00 0.00 4.35
5087 5689 0.963856 TGGAGATAGGCGTGTCGTGT 60.964 55.000 0.00 0.00 0.00 4.49
5088 5690 0.525668 GGAGATAGGCGTGTCGTGTG 60.526 60.000 0.00 0.00 0.00 3.82
5089 5691 0.525668 GAGATAGGCGTGTCGTGTGG 60.526 60.000 0.00 0.00 0.00 4.17
5090 5692 2.125673 ATAGGCGTGTCGTGTGGC 60.126 61.111 0.00 0.00 0.00 5.01
5091 5693 3.982372 ATAGGCGTGTCGTGTGGCG 62.982 63.158 0.00 0.00 43.01 5.69
5099 5701 3.295273 TCGTGTGGCGACAGCTCT 61.295 61.111 0.12 0.00 45.68 4.09
5100 5702 3.108289 CGTGTGGCGACAGCTCTG 61.108 66.667 0.12 0.00 44.46 3.35
5101 5703 2.740055 GTGTGGCGACAGCTCTGG 60.740 66.667 0.12 0.00 44.46 3.86
5102 5704 4.687215 TGTGGCGACAGCTCTGGC 62.687 66.667 0.00 0.00 44.46 4.85
5116 5718 4.970662 GCTCTGGCTTGAAACATATGAA 57.029 40.909 10.38 0.00 35.22 2.57
5117 5719 5.314923 GCTCTGGCTTGAAACATATGAAA 57.685 39.130 10.38 0.00 35.22 2.69
5118 5720 5.899299 GCTCTGGCTTGAAACATATGAAAT 58.101 37.500 10.38 0.00 35.22 2.17
5119 5721 6.335777 GCTCTGGCTTGAAACATATGAAATT 58.664 36.000 10.38 1.29 35.22 1.82
5120 5722 6.474751 GCTCTGGCTTGAAACATATGAAATTC 59.525 38.462 10.38 10.95 35.22 2.17
5121 5723 7.630082 GCTCTGGCTTGAAACATATGAAATTCT 60.630 37.037 10.38 0.00 35.22 2.40
5122 5724 8.125978 TCTGGCTTGAAACATATGAAATTCTT 57.874 30.769 10.38 0.00 0.00 2.52
5123 5725 8.246180 TCTGGCTTGAAACATATGAAATTCTTC 58.754 33.333 10.38 3.23 0.00 2.87
5124 5726 7.894708 TGGCTTGAAACATATGAAATTCTTCA 58.105 30.769 10.38 5.57 45.53 3.02
5125 5727 7.814107 TGGCTTGAAACATATGAAATTCTTCAC 59.186 33.333 10.38 4.97 44.28 3.18
5126 5728 7.814107 GGCTTGAAACATATGAAATTCTTCACA 59.186 33.333 10.38 0.00 44.28 3.58
5127 5729 9.195411 GCTTGAAACATATGAAATTCTTCACAA 57.805 29.630 10.38 2.77 44.28 3.33
5139 5741 1.956477 TCTTCACAAGAAAGCAAGGGC 59.044 47.619 0.00 0.00 35.73 5.19
5140 5742 1.682854 CTTCACAAGAAAGCAAGGGCA 59.317 47.619 0.00 0.00 44.61 5.36
5141 5743 1.774110 TCACAAGAAAGCAAGGGCAA 58.226 45.000 0.00 0.00 44.61 4.52
5142 5744 1.682854 TCACAAGAAAGCAAGGGCAAG 59.317 47.619 0.00 0.00 44.61 4.01
5143 5745 1.682854 CACAAGAAAGCAAGGGCAAGA 59.317 47.619 0.00 0.00 44.61 3.02
5144 5746 2.298163 CACAAGAAAGCAAGGGCAAGAT 59.702 45.455 0.00 0.00 44.61 2.40
5145 5747 2.298163 ACAAGAAAGCAAGGGCAAGATG 59.702 45.455 0.00 0.00 44.61 2.90
5146 5748 1.553706 AGAAAGCAAGGGCAAGATGG 58.446 50.000 0.00 0.00 44.61 3.51
5147 5749 1.203100 AGAAAGCAAGGGCAAGATGGT 60.203 47.619 0.00 0.00 44.61 3.55
5148 5750 2.041620 AGAAAGCAAGGGCAAGATGGTA 59.958 45.455 0.00 0.00 44.61 3.25
5149 5751 2.834638 AAGCAAGGGCAAGATGGTAT 57.165 45.000 0.00 0.00 44.61 2.73
5150 5752 2.062971 AGCAAGGGCAAGATGGTATG 57.937 50.000 0.00 0.00 44.61 2.39
5151 5753 1.565759 AGCAAGGGCAAGATGGTATGA 59.434 47.619 0.00 0.00 44.61 2.15
5152 5754 1.678101 GCAAGGGCAAGATGGTATGAC 59.322 52.381 0.00 0.00 40.72 3.06
5153 5755 2.301346 CAAGGGCAAGATGGTATGACC 58.699 52.381 0.00 0.00 45.69 4.02
5155 5757 1.972872 GGGCAAGATGGTATGACCTG 58.027 55.000 0.00 0.00 41.81 4.00
5156 5758 1.477558 GGGCAAGATGGTATGACCTGG 60.478 57.143 0.00 0.00 41.81 4.45
5157 5759 1.477558 GGCAAGATGGTATGACCTGGG 60.478 57.143 0.00 0.00 39.58 4.45
5158 5760 1.972872 CAAGATGGTATGACCTGGGC 58.027 55.000 0.00 0.00 39.58 5.36
5159 5761 1.492176 CAAGATGGTATGACCTGGGCT 59.508 52.381 0.00 0.00 39.58 5.19
5160 5762 1.428869 AGATGGTATGACCTGGGCTC 58.571 55.000 0.00 0.00 39.58 4.70
5161 5763 1.061812 AGATGGTATGACCTGGGCTCT 60.062 52.381 0.00 0.00 39.58 4.09
5162 5764 1.346068 GATGGTATGACCTGGGCTCTC 59.654 57.143 0.00 0.00 39.58 3.20
5163 5765 0.339859 TGGTATGACCTGGGCTCTCT 59.660 55.000 0.00 0.00 39.58 3.10
5164 5766 0.755686 GGTATGACCTGGGCTCTCTG 59.244 60.000 0.00 0.00 34.73 3.35
5165 5767 1.490574 GTATGACCTGGGCTCTCTGT 58.509 55.000 0.00 0.00 0.00 3.41
5166 5768 1.410882 GTATGACCTGGGCTCTCTGTC 59.589 57.143 0.00 0.00 0.00 3.51
5167 5769 0.042431 ATGACCTGGGCTCTCTGTCT 59.958 55.000 0.00 0.00 0.00 3.41
5168 5770 0.178921 TGACCTGGGCTCTCTGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
5169 5771 0.534873 GACCTGGGCTCTCTGTCTTC 59.465 60.000 0.00 0.00 0.00 2.87
5170 5772 0.116143 ACCTGGGCTCTCTGTCTTCT 59.884 55.000 0.00 0.00 0.00 2.85
5171 5773 0.823460 CCTGGGCTCTCTGTCTTCTC 59.177 60.000 0.00 0.00 0.00 2.87
5172 5774 0.823460 CTGGGCTCTCTGTCTTCTCC 59.177 60.000 0.00 0.00 0.00 3.71
5173 5775 0.616111 TGGGCTCTCTGTCTTCTCCC 60.616 60.000 0.00 0.00 0.00 4.30
5174 5776 0.616111 GGGCTCTCTGTCTTCTCCCA 60.616 60.000 0.00 0.00 32.68 4.37
5175 5777 0.823460 GGCTCTCTGTCTTCTCCCAG 59.177 60.000 0.00 0.00 0.00 4.45
5176 5778 0.823460 GCTCTCTGTCTTCTCCCAGG 59.177 60.000 0.00 0.00 0.00 4.45
5177 5779 0.823460 CTCTCTGTCTTCTCCCAGGC 59.177 60.000 0.00 0.00 0.00 4.85
5178 5780 0.967887 TCTCTGTCTTCTCCCAGGCG 60.968 60.000 0.00 0.00 0.00 5.52
5179 5781 1.228894 TCTGTCTTCTCCCAGGCGT 60.229 57.895 0.00 0.00 0.00 5.68
5180 5782 1.079543 CTGTCTTCTCCCAGGCGTG 60.080 63.158 0.00 0.00 0.00 5.34
5181 5783 2.435059 GTCTTCTCCCAGGCGTGC 60.435 66.667 0.00 0.00 0.00 5.34
5182 5784 3.706373 TCTTCTCCCAGGCGTGCC 61.706 66.667 1.67 1.67 0.00 5.01
5183 5785 4.020617 CTTCTCCCAGGCGTGCCA 62.021 66.667 14.29 0.00 38.92 4.92
5184 5786 3.965539 CTTCTCCCAGGCGTGCCAG 62.966 68.421 14.29 4.79 38.92 4.85
5186 5788 4.767255 CTCCCAGGCGTGCCAGAC 62.767 72.222 14.29 0.00 38.92 3.51
5190 5792 4.320456 CAGGCGTGCCAGACCAGT 62.320 66.667 14.29 0.00 38.92 4.00
5191 5793 4.320456 AGGCGTGCCAGACCAGTG 62.320 66.667 14.29 0.00 38.92 3.66
5193 5795 4.314440 GCGTGCCAGACCAGTGGA 62.314 66.667 18.40 0.00 40.44 4.02
5194 5796 2.047844 CGTGCCAGACCAGTGGAG 60.048 66.667 18.40 5.07 40.44 3.86
5195 5797 2.348998 GTGCCAGACCAGTGGAGG 59.651 66.667 18.40 15.33 40.44 4.30
5196 5798 2.930019 TGCCAGACCAGTGGAGGG 60.930 66.667 18.40 14.63 40.44 4.30
5197 5799 2.607750 GCCAGACCAGTGGAGGGA 60.608 66.667 18.40 0.00 40.44 4.20
5198 5800 2.664081 GCCAGACCAGTGGAGGGAG 61.664 68.421 18.40 1.26 40.44 4.30
5199 5801 1.229336 CCAGACCAGTGGAGGGAGT 60.229 63.158 18.40 0.00 40.44 3.85
5200 5802 0.041238 CCAGACCAGTGGAGGGAGTA 59.959 60.000 18.40 0.00 40.44 2.59
5201 5803 1.187087 CAGACCAGTGGAGGGAGTAC 58.813 60.000 18.40 0.00 0.00 2.73
5202 5804 1.085715 AGACCAGTGGAGGGAGTACT 58.914 55.000 18.40 0.00 0.00 2.73
5203 5805 1.006162 AGACCAGTGGAGGGAGTACTC 59.994 57.143 18.40 14.87 36.76 2.59
5215 5817 1.401199 GGAGTACTCCCTTCGTTCTCG 59.599 57.143 28.87 0.00 43.94 4.04
5216 5818 2.083002 GAGTACTCCCTTCGTTCTCGT 58.917 52.381 12.13 0.00 38.33 4.18
5217 5819 2.487372 GAGTACTCCCTTCGTTCTCGTT 59.513 50.000 12.13 0.00 38.33 3.85
5218 5820 2.228343 AGTACTCCCTTCGTTCTCGTTG 59.772 50.000 0.00 0.00 38.33 4.10
5219 5821 1.038280 ACTCCCTTCGTTCTCGTTGT 58.962 50.000 0.00 0.00 38.33 3.32
5220 5822 1.269621 ACTCCCTTCGTTCTCGTTGTG 60.270 52.381 0.00 0.00 38.33 3.33
5221 5823 0.032952 TCCCTTCGTTCTCGTTGTGG 59.967 55.000 0.00 0.00 38.33 4.17
5222 5824 1.566018 CCCTTCGTTCTCGTTGTGGC 61.566 60.000 0.00 0.00 38.33 5.01
5223 5825 0.600255 CCTTCGTTCTCGTTGTGGCT 60.600 55.000 0.00 0.00 38.33 4.75
5224 5826 0.508641 CTTCGTTCTCGTTGTGGCTG 59.491 55.000 0.00 0.00 38.33 4.85
5225 5827 0.103390 TTCGTTCTCGTTGTGGCTGA 59.897 50.000 0.00 0.00 38.33 4.26
5226 5828 0.103390 TCGTTCTCGTTGTGGCTGAA 59.897 50.000 0.00 0.00 38.33 3.02
5227 5829 0.934496 CGTTCTCGTTGTGGCTGAAA 59.066 50.000 0.00 0.00 0.00 2.69
5228 5830 1.531149 CGTTCTCGTTGTGGCTGAAAT 59.469 47.619 0.00 0.00 0.00 2.17
5229 5831 2.032030 CGTTCTCGTTGTGGCTGAAATT 60.032 45.455 0.00 0.00 0.00 1.82
5230 5832 3.555518 GTTCTCGTTGTGGCTGAAATTC 58.444 45.455 0.00 0.00 0.00 2.17
5231 5833 2.844946 TCTCGTTGTGGCTGAAATTCA 58.155 42.857 0.00 0.00 0.00 2.57
5232 5834 3.411446 TCTCGTTGTGGCTGAAATTCAT 58.589 40.909 0.00 0.00 0.00 2.57
5233 5835 3.189080 TCTCGTTGTGGCTGAAATTCATG 59.811 43.478 0.00 0.00 0.00 3.07
5234 5836 2.884012 TCGTTGTGGCTGAAATTCATGT 59.116 40.909 0.00 0.00 0.00 3.21
5235 5837 4.068599 TCGTTGTGGCTGAAATTCATGTA 58.931 39.130 0.00 0.00 0.00 2.29
5236 5838 4.699735 TCGTTGTGGCTGAAATTCATGTAT 59.300 37.500 0.00 0.00 0.00 2.29
5237 5839 5.030295 CGTTGTGGCTGAAATTCATGTATC 58.970 41.667 0.00 0.00 0.00 2.24
5238 5840 5.163723 CGTTGTGGCTGAAATTCATGTATCT 60.164 40.000 0.00 0.00 0.00 1.98
5239 5841 6.037062 CGTTGTGGCTGAAATTCATGTATCTA 59.963 38.462 0.00 0.00 0.00 1.98
5240 5842 7.412853 GTTGTGGCTGAAATTCATGTATCTAG 58.587 38.462 0.00 0.00 0.00 2.43
5241 5843 6.888105 TGTGGCTGAAATTCATGTATCTAGA 58.112 36.000 0.00 0.00 0.00 2.43
5242 5844 6.763135 TGTGGCTGAAATTCATGTATCTAGAC 59.237 38.462 0.00 0.00 0.00 2.59
5243 5845 5.985530 TGGCTGAAATTCATGTATCTAGACG 59.014 40.000 0.00 0.00 0.00 4.18
5244 5846 5.986135 GGCTGAAATTCATGTATCTAGACGT 59.014 40.000 0.00 0.00 0.00 4.34
5245 5847 7.145985 GGCTGAAATTCATGTATCTAGACGTA 58.854 38.462 0.00 0.00 0.00 3.57
5246 5848 7.815068 GGCTGAAATTCATGTATCTAGACGTAT 59.185 37.037 0.00 0.00 0.00 3.06
5247 5849 9.197694 GCTGAAATTCATGTATCTAGACGTATT 57.802 33.333 0.00 0.00 0.00 1.89
5254 5856 9.961265 TTCATGTATCTAGACGTATTTTAGTGG 57.039 33.333 0.00 0.00 0.00 4.00
5255 5857 9.128404 TCATGTATCTAGACGTATTTTAGTGGT 57.872 33.333 0.00 0.00 0.00 4.16
5256 5858 9.745880 CATGTATCTAGACGTATTTTAGTGGTT 57.254 33.333 0.00 0.00 0.00 3.67
5267 5869 9.166173 ACGTATTTTAGTGGTTAAATAACTCCC 57.834 33.333 3.55 0.00 36.47 4.30
5268 5870 9.387257 CGTATTTTAGTGGTTAAATAACTCCCT 57.613 33.333 3.55 0.93 36.47 4.20
5270 5872 8.818622 ATTTTAGTGGTTAAATAACTCCCTCC 57.181 34.615 3.55 0.00 36.47 4.30
5271 5873 7.578458 TTTAGTGGTTAAATAACTCCCTCCT 57.422 36.000 3.55 0.00 36.47 3.69
5272 5874 8.683776 TTTAGTGGTTAAATAACTCCCTCCTA 57.316 34.615 3.55 0.00 36.47 2.94
5273 5875 6.556974 AGTGGTTAAATAACTCCCTCCTAC 57.443 41.667 3.55 0.00 36.47 3.18
5274 5876 5.128335 AGTGGTTAAATAACTCCCTCCTACG 59.872 44.000 3.55 0.00 36.47 3.51
5275 5877 5.127682 GTGGTTAAATAACTCCCTCCTACGA 59.872 44.000 3.55 0.00 36.47 3.43
5276 5878 5.901276 TGGTTAAATAACTCCCTCCTACGAT 59.099 40.000 3.55 0.00 36.47 3.73
5277 5879 7.014615 GTGGTTAAATAACTCCCTCCTACGATA 59.985 40.741 3.55 0.00 36.47 2.92
5278 5880 7.014615 TGGTTAAATAACTCCCTCCTACGATAC 59.985 40.741 3.55 0.00 36.47 2.24
5279 5881 7.232330 GGTTAAATAACTCCCTCCTACGATACT 59.768 40.741 3.55 0.00 36.47 2.12
5280 5882 9.289782 GTTAAATAACTCCCTCCTACGATACTA 57.710 37.037 0.00 0.00 33.52 1.82
5281 5883 9.866655 TTAAATAACTCCCTCCTACGATACTAA 57.133 33.333 0.00 0.00 0.00 2.24
5282 5884 8.953223 AAATAACTCCCTCCTACGATACTAAT 57.047 34.615 0.00 0.00 0.00 1.73
5283 5885 8.953223 AATAACTCCCTCCTACGATACTAATT 57.047 34.615 0.00 0.00 0.00 1.40
5285 5887 7.999450 AACTCCCTCCTACGATACTAATTAG 57.001 40.000 11.05 11.05 0.00 1.73
5286 5888 7.089106 ACTCCCTCCTACGATACTAATTAGT 57.911 40.000 21.35 21.35 40.24 2.24
5287 5889 8.212259 ACTCCCTCCTACGATACTAATTAGTA 57.788 38.462 24.01 24.01 42.43 1.82
5288 5890 8.664079 ACTCCCTCCTACGATACTAATTAGTAA 58.336 37.037 25.21 10.98 41.64 2.24
5289 5891 9.512588 CTCCCTCCTACGATACTAATTAGTAAA 57.487 37.037 25.21 9.65 41.64 2.01
5290 5892 9.866655 TCCCTCCTACGATACTAATTAGTAAAA 57.133 33.333 25.21 8.96 41.64 1.52
5322 5924 9.373603 TGGATGAATAAGAATGCTTGATTTTTG 57.626 29.630 0.00 0.00 35.56 2.44
5323 5925 9.590451 GGATGAATAAGAATGCTTGATTTTTGA 57.410 29.630 0.00 0.00 35.56 2.69
5329 5931 6.939551 AGAATGCTTGATTTTTGATTGACG 57.060 33.333 0.00 0.00 0.00 4.35
5330 5932 6.680810 AGAATGCTTGATTTTTGATTGACGA 58.319 32.000 0.00 0.00 0.00 4.20
5331 5933 7.318141 AGAATGCTTGATTTTTGATTGACGAT 58.682 30.769 0.00 0.00 0.00 3.73
5332 5934 6.880822 ATGCTTGATTTTTGATTGACGATG 57.119 33.333 0.00 0.00 0.00 3.84
5333 5935 5.771469 TGCTTGATTTTTGATTGACGATGT 58.229 33.333 0.00 0.00 0.00 3.06
5334 5936 5.858049 TGCTTGATTTTTGATTGACGATGTC 59.142 36.000 0.00 0.00 0.00 3.06
5335 5937 5.287035 GCTTGATTTTTGATTGACGATGTCC 59.713 40.000 0.00 0.00 0.00 4.02
5336 5938 5.309323 TGATTTTTGATTGACGATGTCCC 57.691 39.130 0.00 0.00 0.00 4.46
5337 5939 5.009631 TGATTTTTGATTGACGATGTCCCT 58.990 37.500 0.00 0.00 0.00 4.20
5338 5940 5.476599 TGATTTTTGATTGACGATGTCCCTT 59.523 36.000 0.00 0.00 0.00 3.95
5339 5941 5.371115 TTTTTGATTGACGATGTCCCTTC 57.629 39.130 0.00 0.00 0.00 3.46
5340 5942 2.691409 TGATTGACGATGTCCCTTCC 57.309 50.000 0.00 0.00 0.00 3.46
5341 5943 1.905894 TGATTGACGATGTCCCTTCCA 59.094 47.619 0.00 0.00 0.00 3.53
5342 5944 2.505407 TGATTGACGATGTCCCTTCCAT 59.495 45.455 0.00 0.00 0.00 3.41
5343 5945 3.054434 TGATTGACGATGTCCCTTCCATT 60.054 43.478 0.00 0.00 0.00 3.16
5344 5946 3.433306 TTGACGATGTCCCTTCCATTT 57.567 42.857 0.00 0.00 0.00 2.32
5345 5947 2.985896 TGACGATGTCCCTTCCATTTC 58.014 47.619 0.00 0.00 0.00 2.17
5346 5948 2.304470 TGACGATGTCCCTTCCATTTCA 59.696 45.455 0.00 0.00 0.00 2.69
5347 5949 2.939103 GACGATGTCCCTTCCATTTCAG 59.061 50.000 0.00 0.00 0.00 3.02
5348 5950 2.571653 ACGATGTCCCTTCCATTTCAGA 59.428 45.455 0.00 0.00 0.00 3.27
5349 5951 3.201290 CGATGTCCCTTCCATTTCAGAG 58.799 50.000 0.00 0.00 0.00 3.35
5350 5952 3.549794 GATGTCCCTTCCATTTCAGAGG 58.450 50.000 0.00 0.00 0.00 3.69
5352 5954 0.625849 TCCCTTCCATTTCAGAGGGC 59.374 55.000 2.37 0.00 46.88 5.19
5353 5955 0.332632 CCCTTCCATTTCAGAGGGCA 59.667 55.000 0.00 0.00 42.18 5.36
5354 5956 1.063417 CCCTTCCATTTCAGAGGGCAT 60.063 52.381 0.00 0.00 42.18 4.40
5355 5957 2.625087 CCCTTCCATTTCAGAGGGCATT 60.625 50.000 0.00 0.00 42.18 3.56
5356 5958 2.692041 CCTTCCATTTCAGAGGGCATTC 59.308 50.000 0.00 0.00 0.00 2.67
5357 5959 2.442236 TCCATTTCAGAGGGCATTCC 57.558 50.000 0.00 0.00 0.00 3.01
5358 5960 1.027357 CCATTTCAGAGGGCATTCCG 58.973 55.000 0.00 0.00 41.52 4.30
5359 5961 1.408683 CCATTTCAGAGGGCATTCCGA 60.409 52.381 0.00 0.00 41.52 4.55
5360 5962 2.579873 CATTTCAGAGGGCATTCCGAT 58.420 47.619 0.00 0.00 41.52 4.18
5361 5963 2.806945 TTTCAGAGGGCATTCCGATT 57.193 45.000 0.00 0.00 41.52 3.34
5362 5964 2.806945 TTCAGAGGGCATTCCGATTT 57.193 45.000 0.00 0.00 41.52 2.17
5363 5965 2.332063 TCAGAGGGCATTCCGATTTC 57.668 50.000 0.00 0.00 41.52 2.17
5364 5966 0.940126 CAGAGGGCATTCCGATTTCG 59.060 55.000 0.00 0.00 41.52 3.46
5365 5967 0.815615 AGAGGGCATTCCGATTTCGC 60.816 55.000 0.00 0.00 41.52 4.70
5366 5968 0.815615 GAGGGCATTCCGATTTCGCT 60.816 55.000 0.00 0.00 41.52 4.93
5367 5969 0.468226 AGGGCATTCCGATTTCGCTA 59.532 50.000 0.00 0.00 41.52 4.26
5368 5970 0.868406 GGGCATTCCGATTTCGCTAG 59.132 55.000 0.00 0.00 38.18 3.42
5369 5971 1.583054 GGCATTCCGATTTCGCTAGT 58.417 50.000 0.00 0.00 38.18 2.57
5370 5972 2.547218 GGGCATTCCGATTTCGCTAGTA 60.547 50.000 0.00 0.00 38.18 1.82
5371 5973 3.326747 GGCATTCCGATTTCGCTAGTAT 58.673 45.455 0.00 0.00 38.18 2.12
5372 5974 3.368236 GGCATTCCGATTTCGCTAGTATC 59.632 47.826 0.00 0.00 38.18 2.24
5373 5975 3.987868 GCATTCCGATTTCGCTAGTATCA 59.012 43.478 0.00 0.00 38.18 2.15
5374 5976 4.143305 GCATTCCGATTTCGCTAGTATCAC 60.143 45.833 0.00 0.00 38.18 3.06
5375 5977 3.637998 TCCGATTTCGCTAGTATCACC 57.362 47.619 0.00 0.00 38.18 4.02
5376 5978 2.953648 TCCGATTTCGCTAGTATCACCA 59.046 45.455 0.00 0.00 38.18 4.17
5377 5979 3.572682 TCCGATTTCGCTAGTATCACCAT 59.427 43.478 0.00 0.00 38.18 3.55
5378 5980 4.038763 TCCGATTTCGCTAGTATCACCATT 59.961 41.667 0.00 0.00 38.18 3.16
5379 5981 5.242171 TCCGATTTCGCTAGTATCACCATTA 59.758 40.000 0.00 0.00 38.18 1.90
5380 5982 6.071560 TCCGATTTCGCTAGTATCACCATTAT 60.072 38.462 0.00 0.00 38.18 1.28
5381 5983 6.590292 CCGATTTCGCTAGTATCACCATTATT 59.410 38.462 0.00 0.00 38.18 1.40
5382 5984 7.117812 CCGATTTCGCTAGTATCACCATTATTT 59.882 37.037 0.00 0.00 38.18 1.40
5383 5985 9.135843 CGATTTCGCTAGTATCACCATTATTTA 57.864 33.333 0.00 0.00 0.00 1.40
5386 5988 9.772973 TTTCGCTAGTATCACCATTATTTATGT 57.227 29.630 0.00 0.00 31.99 2.29
5387 5989 8.981724 TCGCTAGTATCACCATTATTTATGTC 57.018 34.615 0.00 0.00 31.99 3.06
5388 5990 8.581578 TCGCTAGTATCACCATTATTTATGTCA 58.418 33.333 0.00 0.00 31.99 3.58
5389 5991 9.203421 CGCTAGTATCACCATTATTTATGTCAA 57.797 33.333 0.00 0.00 31.99 3.18
5403 6005 6.942532 TTTATGTCAAATACATCTGCTCCC 57.057 37.500 0.00 0.00 46.15 4.30
5404 6006 3.998913 TGTCAAATACATCTGCTCCCA 57.001 42.857 0.00 0.00 31.43 4.37
5405 6007 4.508551 TGTCAAATACATCTGCTCCCAT 57.491 40.909 0.00 0.00 31.43 4.00
5406 6008 4.201657 TGTCAAATACATCTGCTCCCATG 58.798 43.478 0.00 0.00 31.43 3.66
5407 6009 3.567164 GTCAAATACATCTGCTCCCATGG 59.433 47.826 4.14 4.14 0.00 3.66
5408 6010 2.889045 CAAATACATCTGCTCCCATGGG 59.111 50.000 26.30 26.30 0.00 4.00
5409 6011 1.070604 ATACATCTGCTCCCATGGGG 58.929 55.000 30.93 21.33 46.11 4.96
5410 6012 1.708993 TACATCTGCTCCCATGGGGC 61.709 60.000 30.93 29.28 43.94 5.80
5411 6013 2.697263 ATCTGCTCCCATGGGGCA 60.697 61.111 32.37 32.37 43.94 5.36
5412 6014 2.089368 ATCTGCTCCCATGGGGCAT 61.089 57.895 33.76 23.30 43.94 4.40
5413 6015 1.661990 ATCTGCTCCCATGGGGCATT 61.662 55.000 33.76 25.02 43.94 3.56
5414 6016 1.831286 CTGCTCCCATGGGGCATTC 60.831 63.158 33.76 19.26 43.94 2.67
5415 6017 2.522680 GCTCCCATGGGGCATTCC 60.523 66.667 30.93 8.97 43.94 3.01
5416 6018 2.203394 CTCCCATGGGGCATTCCG 60.203 66.667 30.93 2.14 43.94 4.30
5417 6019 2.694240 TCCCATGGGGCATTCCGA 60.694 61.111 30.93 5.59 43.94 4.55
5418 6020 2.072874 CTCCCATGGGGCATTCCGAT 62.073 60.000 30.93 0.00 43.94 4.18
5419 6021 1.152483 CCCATGGGGCATTCCGATT 60.152 57.895 24.53 0.00 35.35 3.34
5420 6022 0.760189 CCCATGGGGCATTCCGATTT 60.760 55.000 24.53 0.00 35.35 2.17
5421 6023 0.675633 CCATGGGGCATTCCGATTTC 59.324 55.000 2.85 0.00 31.10 2.17
5422 6024 0.675633 CATGGGGCATTCCGATTTCC 59.324 55.000 0.00 0.00 31.10 3.13
5423 6025 0.469892 ATGGGGCATTCCGATTTCCC 60.470 55.000 0.00 0.00 36.01 3.97
5424 6026 1.230212 GGGGCATTCCGATTTCCCT 59.770 57.895 0.00 0.00 37.16 4.20
5425 6027 0.476771 GGGGCATTCCGATTTCCCTA 59.523 55.000 0.00 0.00 37.16 3.53
5426 6028 1.545651 GGGGCATTCCGATTTCCCTAG 60.546 57.143 0.00 0.00 37.16 3.02
5427 6029 1.143073 GGGCATTCCGATTTCCCTAGT 59.857 52.381 0.00 0.00 34.19 2.57
5428 6030 2.370849 GGGCATTCCGATTTCCCTAGTA 59.629 50.000 0.00 0.00 34.19 1.82
5429 6031 3.009143 GGGCATTCCGATTTCCCTAGTAT 59.991 47.826 0.00 0.00 34.19 2.12
5430 6032 4.254492 GGCATTCCGATTTCCCTAGTATC 58.746 47.826 0.00 0.00 0.00 2.24
5431 6033 4.262894 GGCATTCCGATTTCCCTAGTATCA 60.263 45.833 0.00 0.00 0.00 2.15
5432 6034 4.691216 GCATTCCGATTTCCCTAGTATCAC 59.309 45.833 0.00 0.00 0.00 3.06
5433 6035 4.950205 TTCCGATTTCCCTAGTATCACC 57.050 45.455 0.00 0.00 0.00 4.02
5434 6036 3.918566 TCCGATTTCCCTAGTATCACCA 58.081 45.455 0.00 0.00 0.00 4.17
5435 6037 4.489737 TCCGATTTCCCTAGTATCACCAT 58.510 43.478 0.00 0.00 0.00 3.55
5436 6038 4.905456 TCCGATTTCCCTAGTATCACCATT 59.095 41.667 0.00 0.00 0.00 3.16
5437 6039 6.079336 TCCGATTTCCCTAGTATCACCATTA 58.921 40.000 0.00 0.00 0.00 1.90
5438 6040 6.729100 TCCGATTTCCCTAGTATCACCATTAT 59.271 38.462 0.00 0.00 0.00 1.28
5439 6041 7.236847 TCCGATTTCCCTAGTATCACCATTATT 59.763 37.037 0.00 0.00 0.00 1.40
5440 6042 7.883311 CCGATTTCCCTAGTATCACCATTATTT 59.117 37.037 0.00 0.00 0.00 1.40
5441 6043 9.938280 CGATTTCCCTAGTATCACCATTATTTA 57.062 33.333 0.00 0.00 0.00 1.40
5444 6046 9.515226 TTTCCCTAGTATCACCATTATTTATGC 57.485 33.333 0.00 0.00 32.60 3.14
5445 6047 7.630082 TCCCTAGTATCACCATTATTTATGCC 58.370 38.462 0.00 0.00 32.60 4.40
5446 6048 7.238723 TCCCTAGTATCACCATTATTTATGCCA 59.761 37.037 0.00 0.00 32.60 4.92
5447 6049 7.888021 CCCTAGTATCACCATTATTTATGCCAA 59.112 37.037 0.00 0.00 32.60 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 6.762187 TCCAAATAACGTGTTGACAGAACTTA 59.238 34.615 8.11 0.00 0.00 2.24
417 440 7.736447 AGAGATAGGTAAACTAATTGCATGC 57.264 36.000 11.82 11.82 34.79 4.06
539 582 7.939784 ATAAATAGGTTCCAACAAGGTCTTC 57.060 36.000 0.00 0.00 39.02 2.87
640 688 8.155821 AGTTTCTCTACTGCTTAAAAAGAACC 57.844 34.615 0.00 0.00 0.00 3.62
641 689 9.047371 AGAGTTTCTCTACTGCTTAAAAAGAAC 57.953 33.333 0.00 0.00 39.28 3.01
642 690 9.262358 GAGAGTTTCTCTACTGCTTAAAAAGAA 57.738 33.333 0.00 0.00 41.35 2.52
643 691 7.873505 GGAGAGTTTCTCTACTGCTTAAAAAGA 59.126 37.037 6.10 0.00 41.35 2.52
644 692 7.657761 TGGAGAGTTTCTCTACTGCTTAAAAAG 59.342 37.037 9.90 0.00 41.74 2.27
645 693 7.506114 TGGAGAGTTTCTCTACTGCTTAAAAA 58.494 34.615 9.90 0.00 41.74 1.94
646 694 7.062749 TGGAGAGTTTCTCTACTGCTTAAAA 57.937 36.000 9.90 0.00 41.74 1.52
647 695 6.665992 TGGAGAGTTTCTCTACTGCTTAAA 57.334 37.500 9.90 0.00 41.74 1.52
648 696 6.456501 GTTGGAGAGTTTCTCTACTGCTTAA 58.543 40.000 9.90 0.00 41.74 1.85
649 697 5.335740 CGTTGGAGAGTTTCTCTACTGCTTA 60.336 44.000 9.90 0.00 41.74 3.09
650 698 4.559704 CGTTGGAGAGTTTCTCTACTGCTT 60.560 45.833 9.90 0.00 41.74 3.91
651 699 3.057174 CGTTGGAGAGTTTCTCTACTGCT 60.057 47.826 9.90 0.00 41.74 4.24
652 700 3.246619 CGTTGGAGAGTTTCTCTACTGC 58.753 50.000 9.90 3.06 41.74 4.40
653 701 4.477780 GACGTTGGAGAGTTTCTCTACTG 58.522 47.826 9.90 3.67 41.74 2.74
654 702 3.188873 CGACGTTGGAGAGTTTCTCTACT 59.811 47.826 9.90 0.00 41.74 2.57
655 703 3.058363 ACGACGTTGGAGAGTTTCTCTAC 60.058 47.826 7.90 2.35 41.35 2.59
656 704 3.058432 CACGACGTTGGAGAGTTTCTCTA 60.058 47.826 7.90 0.00 41.35 2.43
657 705 1.955080 ACGACGTTGGAGAGTTTCTCT 59.045 47.619 7.90 0.00 44.28 3.10
658 706 2.052157 CACGACGTTGGAGAGTTTCTC 58.948 52.381 7.90 0.00 42.66 2.87
659 707 1.868519 GCACGACGTTGGAGAGTTTCT 60.869 52.381 7.90 0.00 0.00 2.52
660 708 0.507358 GCACGACGTTGGAGAGTTTC 59.493 55.000 7.90 0.00 0.00 2.78
1166 1592 4.649692 CAAGGATCCTAATAGCACTGCAT 58.350 43.478 16.55 0.00 0.00 3.96
1201 1627 3.303132 CCTGTCGTTCACAACAACTTAGC 60.303 47.826 0.00 0.00 33.31 3.09
1445 1892 3.112075 CTACACACACAGGGCGCG 61.112 66.667 0.00 0.00 0.00 6.86
1760 2212 2.794103 ACAGCATTTGTCACAGCCATA 58.206 42.857 0.00 0.00 33.87 2.74
2240 2713 8.840833 TGTCAAGCAACAAATCTACAATAGTA 57.159 30.769 0.00 0.00 0.00 1.82
2248 2721 4.321899 GCCCAATGTCAAGCAACAAATCTA 60.322 41.667 0.00 0.00 31.81 1.98
2286 2759 9.252962 GCTGCCAATATAATAATGATATTTGCC 57.747 33.333 8.96 0.00 37.22 4.52
2378 2851 3.253677 TCTGAGAACTCGTTCCTGAAGTC 59.746 47.826 6.20 0.00 40.33 3.01
2395 2868 5.230306 CGAAGCTTATCGTTAGGTTTCTGAG 59.770 44.000 0.00 0.00 38.01 3.35
2483 2956 9.297037 AGCATTTAATTCAGGTAAACTACAAGT 57.703 29.630 0.00 0.00 0.00 3.16
2579 3052 8.795842 TCGGTATTAACTTGTTTAATGGTCAT 57.204 30.769 0.47 0.00 40.12 3.06
2682 3155 9.856488 GATTTCAAGACCAATATCGCTAGTATA 57.144 33.333 0.00 0.00 0.00 1.47
2699 3172 7.817910 TTAGGTAAAGTAGGGGATTTCAAGA 57.182 36.000 0.00 0.00 0.00 3.02
2700 3173 8.107729 AGTTTAGGTAAAGTAGGGGATTTCAAG 58.892 37.037 0.00 0.00 0.00 3.02
2701 3174 7.992295 AGTTTAGGTAAAGTAGGGGATTTCAA 58.008 34.615 0.00 0.00 0.00 2.69
2798 3274 7.789026 TGATTATCAGGATATAGCATGTCCAG 58.211 38.462 2.24 6.42 42.45 3.86
2926 3402 9.167311 GAGTACAGAAAATATCAACCTGACATT 57.833 33.333 0.00 0.00 0.00 2.71
2982 3458 5.070001 TGGTTGAAGGACCTCTTTGTATTG 58.930 41.667 0.00 0.00 40.47 1.90
2983 3459 5.319043 TGGTTGAAGGACCTCTTTGTATT 57.681 39.130 0.00 0.00 40.47 1.89
3045 3521 7.148356 TGTGAAGCAATATCAATGTTCAGAGTC 60.148 37.037 0.00 0.00 0.00 3.36
3158 3634 7.010552 ACAAAGTCTAGCAATCTATAAAGCACG 59.989 37.037 0.00 0.00 0.00 5.34
3466 4057 6.238953 GCAAAATAGAGAATGGTCATGCAGAT 60.239 38.462 0.00 0.00 0.00 2.90
3647 4238 8.862550 ATGAGACAAGAAAAACAATGAACTTC 57.137 30.769 0.00 0.00 0.00 3.01
3873 4464 1.888512 GTGCTGCAAATGAAGAGGGAA 59.111 47.619 2.77 0.00 0.00 3.97
4047 4638 4.404715 AGGAGCCAATGGATTCATTTGAAG 59.595 41.667 2.05 0.00 41.29 3.02
4083 4674 9.347240 AGCAAGTTCATGATATTAGCATACTTT 57.653 29.630 7.16 0.00 27.62 2.66
4248 4839 7.037438 ACAAACTCGTAACAAAGTTAGTCTCA 58.963 34.615 0.00 0.00 34.71 3.27
4333 4924 4.243270 AGCGAACCTGTGAAGTACATAAC 58.757 43.478 0.00 0.00 38.92 1.89
4549 5140 4.337555 GGGAGATGACTTCCATGTTCATTG 59.662 45.833 0.00 0.00 41.35 2.82
4750 5344 4.273480 CAGCTCTATATTTTTCCGTGTGGG 59.727 45.833 0.00 0.00 35.24 4.61
4756 5350 9.013490 CAAAACAATCAGCTCTATATTTTTCCG 57.987 33.333 0.00 0.00 0.00 4.30
4780 5374 8.635328 AGCAATATTCATGTGCTCATTTATCAA 58.365 29.630 2.10 0.00 45.32 2.57
4781 5375 8.173542 AGCAATATTCATGTGCTCATTTATCA 57.826 30.769 2.10 0.00 45.32 2.15
4791 5385 6.956299 ACTTCAAAAGCAATATTCATGTGC 57.044 33.333 0.00 0.00 38.59 4.57
4832 5433 7.655328 CCATTCTATAGACTACAGAAAAGCCTG 59.345 40.741 7.27 1.54 39.93 4.85
4843 5444 5.642165 TCCCTCCACCATTCTATAGACTAC 58.358 45.833 0.67 0.00 0.00 2.73
4863 5464 5.064707 GCTGTTTTTGGTTTTCTTTTCTCCC 59.935 40.000 0.00 0.00 0.00 4.30
4872 5473 1.592543 CGCCAGCTGTTTTTGGTTTTC 59.407 47.619 13.81 0.00 36.81 2.29
4891 5493 2.281070 AGCTCCACACAACAGCCG 60.281 61.111 0.00 0.00 33.28 5.52
4938 5540 4.525949 GGTCTCGTTAGCCGGGGC 62.526 72.222 2.18 0.18 42.34 5.80
4939 5541 2.356780 AAGGTCTCGTTAGCCGGGG 61.357 63.158 2.18 0.00 37.74 5.73
4940 5542 1.153628 CAAGGTCTCGTTAGCCGGG 60.154 63.158 2.18 0.00 38.86 5.73
4941 5543 1.153628 CCAAGGTCTCGTTAGCCGG 60.154 63.158 0.00 0.00 37.11 6.13
4942 5544 1.810030 GCCAAGGTCTCGTTAGCCG 60.810 63.158 0.00 0.00 38.13 5.52
4943 5545 0.107654 ATGCCAAGGTCTCGTTAGCC 60.108 55.000 0.00 0.00 0.00 3.93
4944 5546 1.009829 CATGCCAAGGTCTCGTTAGC 58.990 55.000 0.00 0.00 0.00 3.09
4945 5547 2.672961 TCATGCCAAGGTCTCGTTAG 57.327 50.000 0.00 0.00 0.00 2.34
4946 5548 2.481276 CGATCATGCCAAGGTCTCGTTA 60.481 50.000 0.00 0.00 0.00 3.18
4947 5549 1.740380 CGATCATGCCAAGGTCTCGTT 60.740 52.381 0.00 0.00 0.00 3.85
4948 5550 0.179100 CGATCATGCCAAGGTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
4949 5551 1.493950 GCGATCATGCCAAGGTCTCG 61.494 60.000 0.00 0.00 0.00 4.04
4950 5552 2.315246 GCGATCATGCCAAGGTCTC 58.685 57.895 0.00 0.00 0.00 3.36
4951 5553 4.547859 GCGATCATGCCAAGGTCT 57.452 55.556 0.00 0.00 0.00 3.85
4959 5561 0.179062 AAGTGAGGAGGCGATCATGC 60.179 55.000 0.00 0.00 0.00 4.06
4960 5562 1.579698 CAAGTGAGGAGGCGATCATG 58.420 55.000 0.00 0.00 0.00 3.07
4961 5563 0.179062 GCAAGTGAGGAGGCGATCAT 60.179 55.000 0.00 0.00 0.00 2.45
4962 5564 1.219124 GCAAGTGAGGAGGCGATCA 59.781 57.895 0.00 0.00 0.00 2.92
4963 5565 0.179062 ATGCAAGTGAGGAGGCGATC 60.179 55.000 0.00 0.00 0.00 3.69
4964 5566 0.179062 GATGCAAGTGAGGAGGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
4965 5567 1.219124 GATGCAAGTGAGGAGGCGA 59.781 57.895 0.00 0.00 0.00 5.54
4966 5568 0.392193 AAGATGCAAGTGAGGAGGCG 60.392 55.000 0.00 0.00 0.00 5.52
4967 5569 1.093159 CAAGATGCAAGTGAGGAGGC 58.907 55.000 0.00 0.00 0.00 4.70
4968 5570 2.630158 CTCAAGATGCAAGTGAGGAGG 58.370 52.381 13.97 0.00 36.04 4.30
4969 5571 2.008329 GCTCAAGATGCAAGTGAGGAG 58.992 52.381 20.09 11.17 39.36 3.69
4970 5572 1.348696 TGCTCAAGATGCAAGTGAGGA 59.651 47.619 20.09 16.61 39.36 3.71
4971 5573 1.467734 GTGCTCAAGATGCAAGTGAGG 59.532 52.381 20.09 7.70 42.41 3.86
4972 5574 2.415857 GAGTGCTCAAGATGCAAGTGAG 59.584 50.000 16.36 16.36 42.41 3.51
4973 5575 2.420642 GAGTGCTCAAGATGCAAGTGA 58.579 47.619 0.00 0.00 42.41 3.41
4974 5576 1.467734 GGAGTGCTCAAGATGCAAGTG 59.532 52.381 0.00 0.00 42.41 3.16
4975 5577 1.818642 GGAGTGCTCAAGATGCAAGT 58.181 50.000 0.00 0.00 42.41 3.16
4976 5578 0.725686 CGGAGTGCTCAAGATGCAAG 59.274 55.000 0.00 0.00 42.41 4.01
4977 5579 1.300971 GCGGAGTGCTCAAGATGCAA 61.301 55.000 0.00 0.00 42.41 4.08
4978 5580 1.742880 GCGGAGTGCTCAAGATGCA 60.743 57.895 0.00 0.00 41.73 3.96
4979 5581 3.096791 GCGGAGTGCTCAAGATGC 58.903 61.111 1.41 0.00 41.73 3.91
4988 5590 0.527385 GATGTCTCAGAGCGGAGTGC 60.527 60.000 0.00 0.00 46.98 4.40
4989 5591 0.102120 GGATGTCTCAGAGCGGAGTG 59.898 60.000 0.00 0.00 36.30 3.51
4990 5592 0.033601 AGGATGTCTCAGAGCGGAGT 60.034 55.000 0.00 0.00 36.30 3.85
4991 5593 1.974265 TAGGATGTCTCAGAGCGGAG 58.026 55.000 0.00 0.00 36.21 4.63
4992 5594 2.302260 CTTAGGATGTCTCAGAGCGGA 58.698 52.381 0.00 0.00 0.00 5.54
4993 5595 1.269517 GCTTAGGATGTCTCAGAGCGG 60.270 57.143 0.00 0.00 0.00 5.52
4994 5596 1.599171 CGCTTAGGATGTCTCAGAGCG 60.599 57.143 0.00 0.00 40.42 5.03
4995 5597 1.407258 ACGCTTAGGATGTCTCAGAGC 59.593 52.381 0.00 0.00 0.00 4.09
4996 5598 2.797792 GCACGCTTAGGATGTCTCAGAG 60.798 54.545 0.00 0.00 0.00 3.35
4997 5599 1.135139 GCACGCTTAGGATGTCTCAGA 59.865 52.381 0.00 0.00 0.00 3.27
4998 5600 1.135915 AGCACGCTTAGGATGTCTCAG 59.864 52.381 0.00 0.00 0.00 3.35
4999 5601 1.134995 CAGCACGCTTAGGATGTCTCA 60.135 52.381 0.00 0.00 0.00 3.27
5000 5602 1.135139 TCAGCACGCTTAGGATGTCTC 59.865 52.381 0.00 0.00 0.00 3.36
5001 5603 1.186200 TCAGCACGCTTAGGATGTCT 58.814 50.000 0.00 0.00 0.00 3.41
5002 5604 1.863454 CATCAGCACGCTTAGGATGTC 59.137 52.381 8.82 0.00 32.68 3.06
5003 5605 1.945387 CATCAGCACGCTTAGGATGT 58.055 50.000 8.82 0.00 32.68 3.06
5004 5606 0.585357 GCATCAGCACGCTTAGGATG 59.415 55.000 11.53 11.53 41.58 3.51
5005 5607 0.467384 AGCATCAGCACGCTTAGGAT 59.533 50.000 0.00 0.00 45.49 3.24
5006 5608 0.460811 CAGCATCAGCACGCTTAGGA 60.461 55.000 0.00 0.00 45.49 2.94
5007 5609 0.742281 ACAGCATCAGCACGCTTAGG 60.742 55.000 0.00 0.00 45.49 2.69
5008 5610 0.372679 CACAGCATCAGCACGCTTAG 59.627 55.000 0.00 0.00 45.49 2.18
5009 5611 1.638388 GCACAGCATCAGCACGCTTA 61.638 55.000 0.00 0.00 45.49 3.09
5010 5612 2.974489 GCACAGCATCAGCACGCTT 61.974 57.895 0.00 0.00 45.49 4.68
5011 5613 3.429141 GCACAGCATCAGCACGCT 61.429 61.111 0.00 0.00 45.49 5.07
5012 5614 3.429141 AGCACAGCATCAGCACGC 61.429 61.111 0.00 0.00 45.49 5.34
5013 5615 2.322830 ACAGCACAGCATCAGCACG 61.323 57.895 0.00 0.00 45.49 5.34
5014 5616 1.209383 CACAGCACAGCATCAGCAC 59.791 57.895 0.00 0.00 45.49 4.40
5015 5617 0.322187 ATCACAGCACAGCATCAGCA 60.322 50.000 0.00 0.00 45.49 4.41
5016 5618 0.098905 CATCACAGCACAGCATCAGC 59.901 55.000 0.00 0.00 42.56 4.26
5017 5619 0.733150 CCATCACAGCACAGCATCAG 59.267 55.000 0.00 0.00 0.00 2.90
5018 5620 1.310216 GCCATCACAGCACAGCATCA 61.310 55.000 0.00 0.00 0.00 3.07
5019 5621 1.030488 AGCCATCACAGCACAGCATC 61.030 55.000 0.00 0.00 0.00 3.91
5020 5622 1.001269 AGCCATCACAGCACAGCAT 60.001 52.632 0.00 0.00 0.00 3.79
5021 5623 1.673337 GAGCCATCACAGCACAGCA 60.673 57.895 0.00 0.00 0.00 4.41
5022 5624 2.747822 CGAGCCATCACAGCACAGC 61.748 63.158 0.00 0.00 0.00 4.40
5023 5625 2.747822 GCGAGCCATCACAGCACAG 61.748 63.158 0.00 0.00 0.00 3.66
5024 5626 2.743538 GCGAGCCATCACAGCACA 60.744 61.111 0.00 0.00 0.00 4.57
5025 5627 2.743538 TGCGAGCCATCACAGCAC 60.744 61.111 0.00 0.00 32.43 4.40
5026 5628 2.743538 GTGCGAGCCATCACAGCA 60.744 61.111 0.00 0.00 33.63 4.41
5027 5629 3.503363 GGTGCGAGCCATCACAGC 61.503 66.667 0.00 0.00 35.04 4.40
5028 5630 2.104859 CAGGTGCGAGCCATCACAG 61.105 63.158 0.00 0.00 35.04 3.66
5029 5631 1.540435 TACAGGTGCGAGCCATCACA 61.540 55.000 0.00 0.00 35.04 3.58
5030 5632 0.391130 TTACAGGTGCGAGCCATCAC 60.391 55.000 0.00 0.00 0.00 3.06
5031 5633 0.541392 ATTACAGGTGCGAGCCATCA 59.459 50.000 0.00 0.00 0.00 3.07
5032 5634 1.599542 GAATTACAGGTGCGAGCCATC 59.400 52.381 0.00 0.00 0.00 3.51
5033 5635 1.210478 AGAATTACAGGTGCGAGCCAT 59.790 47.619 0.00 0.00 0.00 4.40
5034 5636 0.613260 AGAATTACAGGTGCGAGCCA 59.387 50.000 0.00 0.00 0.00 4.75
5035 5637 2.202566 GTAGAATTACAGGTGCGAGCC 58.797 52.381 0.00 0.00 0.00 4.70
5036 5638 2.888594 TGTAGAATTACAGGTGCGAGC 58.111 47.619 0.00 0.00 34.91 5.03
5037 5639 4.201724 GCTTTGTAGAATTACAGGTGCGAG 60.202 45.833 0.00 0.00 40.68 5.03
5038 5640 3.682858 GCTTTGTAGAATTACAGGTGCGA 59.317 43.478 0.00 0.00 40.68 5.10
5039 5641 3.181510 GGCTTTGTAGAATTACAGGTGCG 60.182 47.826 0.00 0.00 40.68 5.34
5040 5642 3.181510 CGGCTTTGTAGAATTACAGGTGC 60.182 47.826 0.00 0.00 40.68 5.01
5041 5643 4.000988 ACGGCTTTGTAGAATTACAGGTG 58.999 43.478 0.00 0.00 40.68 4.00
5042 5644 4.020485 AGACGGCTTTGTAGAATTACAGGT 60.020 41.667 0.00 0.00 40.68 4.00
5043 5645 4.504858 AGACGGCTTTGTAGAATTACAGG 58.495 43.478 0.00 0.00 40.68 4.00
5044 5646 4.567159 GGAGACGGCTTTGTAGAATTACAG 59.433 45.833 0.00 0.00 40.68 2.74
5045 5647 4.222145 AGGAGACGGCTTTGTAGAATTACA 59.778 41.667 0.00 0.00 38.00 2.41
5046 5648 4.567159 CAGGAGACGGCTTTGTAGAATTAC 59.433 45.833 0.00 0.00 0.00 1.89
5047 5649 4.382685 CCAGGAGACGGCTTTGTAGAATTA 60.383 45.833 0.00 0.00 0.00 1.40
5048 5650 3.600388 CAGGAGACGGCTTTGTAGAATT 58.400 45.455 0.00 0.00 0.00 2.17
5049 5651 2.093447 CCAGGAGACGGCTTTGTAGAAT 60.093 50.000 0.00 0.00 0.00 2.40
5050 5652 1.275291 CCAGGAGACGGCTTTGTAGAA 59.725 52.381 0.00 0.00 0.00 2.10
5051 5653 0.895530 CCAGGAGACGGCTTTGTAGA 59.104 55.000 0.00 0.00 0.00 2.59
5052 5654 0.895530 TCCAGGAGACGGCTTTGTAG 59.104 55.000 0.00 0.00 0.00 2.74
5053 5655 0.895530 CTCCAGGAGACGGCTTTGTA 59.104 55.000 11.62 0.00 0.00 2.41
5054 5656 0.832135 TCTCCAGGAGACGGCTTTGT 60.832 55.000 15.98 0.00 33.35 2.83
5055 5657 0.539051 ATCTCCAGGAGACGGCTTTG 59.461 55.000 22.34 0.00 41.76 2.77
5056 5658 2.035632 CTATCTCCAGGAGACGGCTTT 58.964 52.381 22.34 7.28 41.76 3.51
5057 5659 1.698506 CTATCTCCAGGAGACGGCTT 58.301 55.000 22.34 8.04 41.76 4.35
5058 5660 0.178975 CCTATCTCCAGGAGACGGCT 60.179 60.000 22.34 8.44 41.76 5.52
5059 5661 1.811645 GCCTATCTCCAGGAGACGGC 61.812 65.000 31.60 31.60 44.88 5.68
5060 5662 1.519751 CGCCTATCTCCAGGAGACGG 61.520 65.000 22.34 23.34 41.76 4.79
5061 5663 0.820074 ACGCCTATCTCCAGGAGACG 60.820 60.000 22.34 21.21 41.76 4.18
5062 5664 0.671251 CACGCCTATCTCCAGGAGAC 59.329 60.000 22.34 8.00 41.76 3.36
5063 5665 0.259065 ACACGCCTATCTCCAGGAGA 59.741 55.000 22.14 22.14 43.20 3.71
5064 5666 0.671251 GACACGCCTATCTCCAGGAG 59.329 60.000 10.70 10.70 40.97 3.69
5065 5667 1.101635 CGACACGCCTATCTCCAGGA 61.102 60.000 0.00 0.00 38.00 3.86
5066 5668 1.360551 CGACACGCCTATCTCCAGG 59.639 63.158 0.00 0.00 38.86 4.45
5067 5669 0.248661 CACGACACGCCTATCTCCAG 60.249 60.000 0.00 0.00 0.00 3.86
5068 5670 0.963856 ACACGACACGCCTATCTCCA 60.964 55.000 0.00 0.00 0.00 3.86
5069 5671 0.525668 CACACGACACGCCTATCTCC 60.526 60.000 0.00 0.00 0.00 3.71
5070 5672 0.525668 CCACACGACACGCCTATCTC 60.526 60.000 0.00 0.00 0.00 2.75
5071 5673 1.511305 CCACACGACACGCCTATCT 59.489 57.895 0.00 0.00 0.00 1.98
5072 5674 2.165301 GCCACACGACACGCCTATC 61.165 63.158 0.00 0.00 0.00 2.08
5073 5675 2.125673 GCCACACGACACGCCTAT 60.126 61.111 0.00 0.00 0.00 2.57
5083 5685 3.108289 CAGAGCTGTCGCCACACG 61.108 66.667 0.00 0.00 45.62 4.49
5084 5686 2.740055 CCAGAGCTGTCGCCACAC 60.740 66.667 0.00 0.00 36.60 3.82
5085 5687 4.687215 GCCAGAGCTGTCGCCACA 62.687 66.667 0.00 0.00 36.60 4.17
5095 5697 4.970662 TTCATATGTTTCAAGCCAGAGC 57.029 40.909 1.90 0.00 40.32 4.09
5096 5698 7.769220 AGAATTTCATATGTTTCAAGCCAGAG 58.231 34.615 1.90 0.00 0.00 3.35
5097 5699 7.707624 AGAATTTCATATGTTTCAAGCCAGA 57.292 32.000 1.90 0.00 0.00 3.86
5098 5700 8.030692 TGAAGAATTTCATATGTTTCAAGCCAG 58.969 33.333 1.90 0.00 38.37 4.85
5099 5701 7.814107 GTGAAGAATTTCATATGTTTCAAGCCA 59.186 33.333 1.90 1.02 44.62 4.75
5100 5702 7.814107 TGTGAAGAATTTCATATGTTTCAAGCC 59.186 33.333 1.90 0.00 44.62 4.35
5101 5703 8.746922 TGTGAAGAATTTCATATGTTTCAAGC 57.253 30.769 1.90 0.98 44.62 4.01
5107 5709 9.415544 GCTTTCTTGTGAAGAATTTCATATGTT 57.584 29.630 1.90 0.00 46.15 2.71
5108 5710 8.579006 TGCTTTCTTGTGAAGAATTTCATATGT 58.421 29.630 1.90 0.00 46.15 2.29
5109 5711 8.975410 TGCTTTCTTGTGAAGAATTTCATATG 57.025 30.769 0.00 0.00 46.15 1.78
5110 5712 9.635520 CTTGCTTTCTTGTGAAGAATTTCATAT 57.364 29.630 0.00 0.00 46.15 1.78
5111 5713 8.084073 CCTTGCTTTCTTGTGAAGAATTTCATA 58.916 33.333 0.00 0.00 46.15 2.15
5112 5714 6.927381 CCTTGCTTTCTTGTGAAGAATTTCAT 59.073 34.615 0.00 0.00 46.15 2.57
5113 5715 6.275335 CCTTGCTTTCTTGTGAAGAATTTCA 58.725 36.000 0.00 0.00 46.15 2.69
5114 5716 5.693555 CCCTTGCTTTCTTGTGAAGAATTTC 59.306 40.000 0.00 0.00 46.15 2.17
5115 5717 5.604565 CCCTTGCTTTCTTGTGAAGAATTT 58.395 37.500 0.00 0.00 46.15 1.82
5116 5718 4.502087 GCCCTTGCTTTCTTGTGAAGAATT 60.502 41.667 0.00 0.00 46.15 2.17
5117 5719 3.006217 GCCCTTGCTTTCTTGTGAAGAAT 59.994 43.478 0.00 0.00 46.15 2.40
5118 5720 2.362077 GCCCTTGCTTTCTTGTGAAGAA 59.638 45.455 0.00 0.00 45.30 2.52
5119 5721 1.956477 GCCCTTGCTTTCTTGTGAAGA 59.044 47.619 0.00 0.00 33.28 2.87
5120 5722 1.682854 TGCCCTTGCTTTCTTGTGAAG 59.317 47.619 0.00 0.00 38.71 3.02
5121 5723 1.774110 TGCCCTTGCTTTCTTGTGAA 58.226 45.000 0.00 0.00 38.71 3.18
5122 5724 1.682854 CTTGCCCTTGCTTTCTTGTGA 59.317 47.619 0.00 0.00 38.71 3.58
5123 5725 1.682854 TCTTGCCCTTGCTTTCTTGTG 59.317 47.619 0.00 0.00 38.71 3.33
5124 5726 2.071778 TCTTGCCCTTGCTTTCTTGT 57.928 45.000 0.00 0.00 38.71 3.16
5125 5727 2.353406 CCATCTTGCCCTTGCTTTCTTG 60.353 50.000 0.00 0.00 38.71 3.02
5126 5728 1.897802 CCATCTTGCCCTTGCTTTCTT 59.102 47.619 0.00 0.00 38.71 2.52
5127 5729 1.203100 ACCATCTTGCCCTTGCTTTCT 60.203 47.619 0.00 0.00 38.71 2.52
5128 5730 1.260544 ACCATCTTGCCCTTGCTTTC 58.739 50.000 0.00 0.00 38.71 2.62
5129 5731 2.603075 TACCATCTTGCCCTTGCTTT 57.397 45.000 0.00 0.00 38.71 3.51
5130 5732 2.025037 TCATACCATCTTGCCCTTGCTT 60.025 45.455 0.00 0.00 38.71 3.91
5131 5733 1.565759 TCATACCATCTTGCCCTTGCT 59.434 47.619 0.00 0.00 38.71 3.91
5132 5734 1.678101 GTCATACCATCTTGCCCTTGC 59.322 52.381 0.00 0.00 38.26 4.01
5133 5735 2.092212 AGGTCATACCATCTTGCCCTTG 60.092 50.000 0.00 0.00 41.95 3.61
5134 5736 2.092212 CAGGTCATACCATCTTGCCCTT 60.092 50.000 0.00 0.00 41.95 3.95
5135 5737 1.492176 CAGGTCATACCATCTTGCCCT 59.508 52.381 0.00 0.00 41.95 5.19
5136 5738 1.477558 CCAGGTCATACCATCTTGCCC 60.478 57.143 0.00 0.00 41.95 5.36
5137 5739 1.477558 CCCAGGTCATACCATCTTGCC 60.478 57.143 0.00 0.00 41.95 4.52
5138 5740 1.972872 CCCAGGTCATACCATCTTGC 58.027 55.000 0.00 0.00 41.95 4.01
5139 5741 1.492176 AGCCCAGGTCATACCATCTTG 59.508 52.381 0.00 0.00 41.95 3.02
5140 5742 1.771255 GAGCCCAGGTCATACCATCTT 59.229 52.381 0.00 0.00 41.95 2.40
5141 5743 1.061812 AGAGCCCAGGTCATACCATCT 60.062 52.381 0.00 0.00 41.95 2.90
5142 5744 1.346068 GAGAGCCCAGGTCATACCATC 59.654 57.143 0.00 0.00 41.95 3.51
5143 5745 1.061812 AGAGAGCCCAGGTCATACCAT 60.062 52.381 0.00 0.00 41.95 3.55
5144 5746 0.339859 AGAGAGCCCAGGTCATACCA 59.660 55.000 0.00 0.00 41.95 3.25
5145 5747 0.755686 CAGAGAGCCCAGGTCATACC 59.244 60.000 0.00 0.00 38.99 2.73
5146 5748 1.410882 GACAGAGAGCCCAGGTCATAC 59.589 57.143 0.00 0.00 31.89 2.39
5147 5749 1.289231 AGACAGAGAGCCCAGGTCATA 59.711 52.381 0.00 0.00 31.89 2.15
5148 5750 0.042431 AGACAGAGAGCCCAGGTCAT 59.958 55.000 0.00 0.00 31.89 3.06
5149 5751 0.178921 AAGACAGAGAGCCCAGGTCA 60.179 55.000 0.00 0.00 31.89 4.02
5150 5752 0.534873 GAAGACAGAGAGCCCAGGTC 59.465 60.000 0.00 0.00 0.00 3.85
5151 5753 0.116143 AGAAGACAGAGAGCCCAGGT 59.884 55.000 0.00 0.00 0.00 4.00
5152 5754 0.823460 GAGAAGACAGAGAGCCCAGG 59.177 60.000 0.00 0.00 0.00 4.45
5153 5755 0.823460 GGAGAAGACAGAGAGCCCAG 59.177 60.000 0.00 0.00 0.00 4.45
5154 5756 0.616111 GGGAGAAGACAGAGAGCCCA 60.616 60.000 0.00 0.00 34.25 5.36
5155 5757 0.616111 TGGGAGAAGACAGAGAGCCC 60.616 60.000 0.00 0.00 34.67 5.19
5156 5758 0.823460 CTGGGAGAAGACAGAGAGCC 59.177 60.000 0.00 0.00 36.86 4.70
5157 5759 0.823460 CCTGGGAGAAGACAGAGAGC 59.177 60.000 0.00 0.00 36.86 4.09
5158 5760 0.823460 GCCTGGGAGAAGACAGAGAG 59.177 60.000 0.00 0.00 36.86 3.20
5159 5761 0.967887 CGCCTGGGAGAAGACAGAGA 60.968 60.000 0.00 0.00 36.86 3.10
5160 5762 1.254284 ACGCCTGGGAGAAGACAGAG 61.254 60.000 0.00 0.00 36.86 3.35
5161 5763 1.228894 ACGCCTGGGAGAAGACAGA 60.229 57.895 0.00 0.00 36.86 3.41
5162 5764 1.079543 CACGCCTGGGAGAAGACAG 60.080 63.158 0.00 0.00 34.54 3.51
5163 5765 3.059982 CACGCCTGGGAGAAGACA 58.940 61.111 0.00 0.00 0.00 3.41
5164 5766 2.435059 GCACGCCTGGGAGAAGAC 60.435 66.667 0.00 0.00 0.00 3.01
5165 5767 3.706373 GGCACGCCTGGGAGAAGA 61.706 66.667 0.00 0.00 0.00 2.87
5166 5768 3.965539 CTGGCACGCCTGGGAGAAG 62.966 68.421 9.92 0.00 36.94 2.85
5167 5769 4.020617 CTGGCACGCCTGGGAGAA 62.021 66.667 9.92 0.00 36.94 2.87
5169 5771 4.767255 GTCTGGCACGCCTGGGAG 62.767 72.222 14.15 1.23 35.98 4.30
5173 5775 4.320456 ACTGGTCTGGCACGCCTG 62.320 66.667 9.92 9.19 36.94 4.85
5174 5776 4.320456 CACTGGTCTGGCACGCCT 62.320 66.667 9.92 0.00 36.94 5.52
5176 5778 4.314440 TCCACTGGTCTGGCACGC 62.314 66.667 0.00 0.00 0.00 5.34
5177 5779 2.047844 CTCCACTGGTCTGGCACG 60.048 66.667 0.00 0.00 0.00 5.34
5178 5780 2.348998 CCTCCACTGGTCTGGCAC 59.651 66.667 0.00 0.00 0.00 5.01
5179 5781 2.930019 CCCTCCACTGGTCTGGCA 60.930 66.667 0.00 0.00 0.00 4.92
5180 5782 2.607750 TCCCTCCACTGGTCTGGC 60.608 66.667 0.00 0.00 0.00 4.85
5181 5783 0.041238 TACTCCCTCCACTGGTCTGG 59.959 60.000 0.00 0.00 0.00 3.86
5182 5784 1.187087 GTACTCCCTCCACTGGTCTG 58.813 60.000 0.00 0.00 0.00 3.51
5183 5785 1.006162 GAGTACTCCCTCCACTGGTCT 59.994 57.143 12.13 0.00 0.00 3.85
5184 5786 1.476477 GAGTACTCCCTCCACTGGTC 58.524 60.000 12.13 0.00 0.00 4.02
5185 5787 3.693810 GAGTACTCCCTCCACTGGT 57.306 57.895 12.13 0.00 0.00 4.00
5195 5797 1.401199 CGAGAACGAAGGGAGTACTCC 59.599 57.143 30.72 30.72 44.66 3.85
5196 5798 2.083002 ACGAGAACGAAGGGAGTACTC 58.917 52.381 14.87 14.87 42.66 2.59
5197 5799 2.197283 ACGAGAACGAAGGGAGTACT 57.803 50.000 0.00 0.00 42.66 2.73
5198 5800 2.030451 ACAACGAGAACGAAGGGAGTAC 60.030 50.000 0.00 0.00 42.66 2.73
5199 5801 2.030540 CACAACGAGAACGAAGGGAGTA 60.031 50.000 0.00 0.00 42.66 2.59
5200 5802 1.038280 ACAACGAGAACGAAGGGAGT 58.962 50.000 0.00 0.00 42.66 3.85
5201 5803 1.419374 CACAACGAGAACGAAGGGAG 58.581 55.000 0.00 0.00 42.66 4.30
5202 5804 0.032952 CCACAACGAGAACGAAGGGA 59.967 55.000 0.00 0.00 42.66 4.20
5203 5805 1.566018 GCCACAACGAGAACGAAGGG 61.566 60.000 0.00 0.00 42.66 3.95
5204 5806 0.600255 AGCCACAACGAGAACGAAGG 60.600 55.000 0.00 0.00 42.66 3.46
5205 5807 0.508641 CAGCCACAACGAGAACGAAG 59.491 55.000 0.00 0.00 42.66 3.79
5206 5808 0.103390 TCAGCCACAACGAGAACGAA 59.897 50.000 0.00 0.00 42.66 3.85
5207 5809 0.103390 TTCAGCCACAACGAGAACGA 59.897 50.000 0.00 0.00 42.66 3.85
5208 5810 0.934496 TTTCAGCCACAACGAGAACG 59.066 50.000 0.00 0.00 45.75 3.95
5209 5811 3.003275 TGAATTTCAGCCACAACGAGAAC 59.997 43.478 0.00 0.00 0.00 3.01
5210 5812 3.210227 TGAATTTCAGCCACAACGAGAA 58.790 40.909 0.00 0.00 0.00 2.87
5211 5813 2.844946 TGAATTTCAGCCACAACGAGA 58.155 42.857 0.00 0.00 0.00 4.04
5212 5814 3.058016 ACATGAATTTCAGCCACAACGAG 60.058 43.478 0.00 0.00 0.00 4.18
5213 5815 2.884012 ACATGAATTTCAGCCACAACGA 59.116 40.909 0.00 0.00 0.00 3.85
5214 5816 3.287312 ACATGAATTTCAGCCACAACG 57.713 42.857 0.00 0.00 0.00 4.10
5215 5817 6.199937 AGATACATGAATTTCAGCCACAAC 57.800 37.500 0.00 0.00 0.00 3.32
5216 5818 7.280876 GTCTAGATACATGAATTTCAGCCACAA 59.719 37.037 0.00 0.00 0.00 3.33
5217 5819 6.763135 GTCTAGATACATGAATTTCAGCCACA 59.237 38.462 0.00 0.00 0.00 4.17
5218 5820 6.074088 CGTCTAGATACATGAATTTCAGCCAC 60.074 42.308 0.00 0.00 0.00 5.01
5219 5821 5.985530 CGTCTAGATACATGAATTTCAGCCA 59.014 40.000 0.00 0.00 0.00 4.75
5220 5822 5.986135 ACGTCTAGATACATGAATTTCAGCC 59.014 40.000 0.00 0.00 0.00 4.85
5221 5823 8.749841 ATACGTCTAGATACATGAATTTCAGC 57.250 34.615 0.00 0.00 0.00 4.26
5228 5830 9.961265 CCACTAAAATACGTCTAGATACATGAA 57.039 33.333 0.00 0.00 0.00 2.57
5229 5831 9.128404 ACCACTAAAATACGTCTAGATACATGA 57.872 33.333 0.00 0.00 0.00 3.07
5230 5832 9.745880 AACCACTAAAATACGTCTAGATACATG 57.254 33.333 0.00 0.00 0.00 3.21
5241 5843 9.166173 GGGAGTTATTTAACCACTAAAATACGT 57.834 33.333 0.00 0.00 36.88 3.57
5242 5844 9.387257 AGGGAGTTATTTAACCACTAAAATACG 57.613 33.333 0.00 0.00 36.88 3.06
5244 5846 9.910267 GGAGGGAGTTATTTAACCACTAAAATA 57.090 33.333 0.00 0.00 36.88 1.40
5245 5847 8.621073 AGGAGGGAGTTATTTAACCACTAAAAT 58.379 33.333 0.00 0.00 36.88 1.82
5246 5848 7.992295 AGGAGGGAGTTATTTAACCACTAAAA 58.008 34.615 0.00 0.00 36.88 1.52
5247 5849 7.578458 AGGAGGGAGTTATTTAACCACTAAA 57.422 36.000 0.00 0.00 36.88 1.85
5248 5850 7.147846 CGTAGGAGGGAGTTATTTAACCACTAA 60.148 40.741 0.00 0.00 36.88 2.24
5249 5851 6.322201 CGTAGGAGGGAGTTATTTAACCACTA 59.678 42.308 0.00 0.00 36.88 2.74
5250 5852 5.128335 CGTAGGAGGGAGTTATTTAACCACT 59.872 44.000 0.00 0.00 36.88 4.00
5251 5853 5.127682 TCGTAGGAGGGAGTTATTTAACCAC 59.872 44.000 0.00 0.00 36.88 4.16
5252 5854 5.271598 TCGTAGGAGGGAGTTATTTAACCA 58.728 41.667 0.00 0.00 36.88 3.67
5253 5855 5.859205 TCGTAGGAGGGAGTTATTTAACC 57.141 43.478 0.00 0.00 36.88 2.85
5254 5856 8.175925 AGTATCGTAGGAGGGAGTTATTTAAC 57.824 38.462 0.00 0.00 36.46 2.01
5255 5857 9.866655 TTAGTATCGTAGGAGGGAGTTATTTAA 57.133 33.333 0.00 0.00 0.00 1.52
5257 5859 8.953223 ATTAGTATCGTAGGAGGGAGTTATTT 57.047 34.615 0.00 0.00 0.00 1.40
5258 5860 8.953223 AATTAGTATCGTAGGAGGGAGTTATT 57.047 34.615 0.00 0.00 0.00 1.40
5259 5861 9.683870 CTAATTAGTATCGTAGGAGGGAGTTAT 57.316 37.037 4.18 0.00 0.00 1.89
5260 5862 8.664079 ACTAATTAGTATCGTAGGAGGGAGTTA 58.336 37.037 16.60 0.00 34.13 2.24
5261 5863 7.525165 ACTAATTAGTATCGTAGGAGGGAGTT 58.475 38.462 16.60 0.00 34.13 3.01
5262 5864 7.089106 ACTAATTAGTATCGTAGGAGGGAGT 57.911 40.000 16.60 0.00 34.13 3.85
5263 5865 9.512588 TTTACTAATTAGTATCGTAGGAGGGAG 57.487 37.037 22.80 0.00 38.48 4.30
5264 5866 9.866655 TTTTACTAATTAGTATCGTAGGAGGGA 57.133 33.333 22.80 4.12 38.48 4.20
5296 5898 9.373603 CAAAAATCAAGCATTCTTATTCATCCA 57.626 29.630 0.00 0.00 0.00 3.41
5297 5899 9.590451 TCAAAAATCAAGCATTCTTATTCATCC 57.410 29.630 0.00 0.00 0.00 3.51
5303 5905 9.079833 CGTCAATCAAAAATCAAGCATTCTTAT 57.920 29.630 0.00 0.00 0.00 1.73
5304 5906 8.296000 TCGTCAATCAAAAATCAAGCATTCTTA 58.704 29.630 0.00 0.00 0.00 2.10
5305 5907 7.147312 TCGTCAATCAAAAATCAAGCATTCTT 58.853 30.769 0.00 0.00 0.00 2.52
5306 5908 6.680810 TCGTCAATCAAAAATCAAGCATTCT 58.319 32.000 0.00 0.00 0.00 2.40
5307 5909 6.932901 TCGTCAATCAAAAATCAAGCATTC 57.067 33.333 0.00 0.00 0.00 2.67
5308 5910 6.869913 ACATCGTCAATCAAAAATCAAGCATT 59.130 30.769 0.00 0.00 0.00 3.56
5309 5911 6.392354 ACATCGTCAATCAAAAATCAAGCAT 58.608 32.000 0.00 0.00 0.00 3.79
5310 5912 5.771469 ACATCGTCAATCAAAAATCAAGCA 58.229 33.333 0.00 0.00 0.00 3.91
5311 5913 5.287035 GGACATCGTCAATCAAAAATCAAGC 59.713 40.000 0.00 0.00 33.68 4.01
5312 5914 5.801947 GGGACATCGTCAATCAAAAATCAAG 59.198 40.000 0.00 0.00 33.68 3.02
5313 5915 5.476599 AGGGACATCGTCAATCAAAAATCAA 59.523 36.000 0.00 0.00 33.68 2.57
5314 5916 5.009631 AGGGACATCGTCAATCAAAAATCA 58.990 37.500 0.00 0.00 33.68 2.57
5315 5917 5.567138 AGGGACATCGTCAATCAAAAATC 57.433 39.130 0.00 0.00 33.68 2.17
5316 5918 5.105756 GGAAGGGACATCGTCAATCAAAAAT 60.106 40.000 0.00 0.00 33.68 1.82
5317 5919 4.217550 GGAAGGGACATCGTCAATCAAAAA 59.782 41.667 0.00 0.00 33.68 1.94
5318 5920 3.756434 GGAAGGGACATCGTCAATCAAAA 59.244 43.478 0.00 0.00 33.68 2.44
5319 5921 3.244735 TGGAAGGGACATCGTCAATCAAA 60.245 43.478 0.00 0.00 33.68 2.69
5320 5922 2.304470 TGGAAGGGACATCGTCAATCAA 59.696 45.455 0.00 0.00 33.68 2.57
5321 5923 1.905894 TGGAAGGGACATCGTCAATCA 59.094 47.619 0.00 0.00 33.68 2.57
5322 5924 2.691409 TGGAAGGGACATCGTCAATC 57.309 50.000 0.00 0.00 33.68 2.67
5323 5925 3.652057 AATGGAAGGGACATCGTCAAT 57.348 42.857 0.00 0.00 33.68 2.57
5324 5926 3.244735 TGAAATGGAAGGGACATCGTCAA 60.245 43.478 0.00 0.00 33.68 3.18
5325 5927 2.304470 TGAAATGGAAGGGACATCGTCA 59.696 45.455 0.00 0.00 33.68 4.35
5326 5928 2.939103 CTGAAATGGAAGGGACATCGTC 59.061 50.000 0.00 0.00 0.00 4.20
5327 5929 2.571653 TCTGAAATGGAAGGGACATCGT 59.428 45.455 0.00 0.00 0.00 3.73
5328 5930 3.201290 CTCTGAAATGGAAGGGACATCG 58.799 50.000 0.00 0.00 0.00 3.84
5329 5931 3.549794 CCTCTGAAATGGAAGGGACATC 58.450 50.000 0.00 0.00 0.00 3.06
5330 5932 2.243221 CCCTCTGAAATGGAAGGGACAT 59.757 50.000 0.00 0.00 38.82 3.06
5331 5933 1.635487 CCCTCTGAAATGGAAGGGACA 59.365 52.381 0.00 0.00 38.82 4.02
5332 5934 1.683319 GCCCTCTGAAATGGAAGGGAC 60.683 57.143 10.46 0.00 38.82 4.46
5333 5935 0.625849 GCCCTCTGAAATGGAAGGGA 59.374 55.000 10.46 0.00 38.82 4.20
5334 5936 0.332632 TGCCCTCTGAAATGGAAGGG 59.667 55.000 1.79 1.79 39.47 3.95
5335 5937 2.449137 ATGCCCTCTGAAATGGAAGG 57.551 50.000 0.00 0.00 0.00 3.46
5336 5938 2.692041 GGAATGCCCTCTGAAATGGAAG 59.308 50.000 0.00 0.00 0.00 3.46
5337 5939 2.738743 GGAATGCCCTCTGAAATGGAA 58.261 47.619 0.00 0.00 0.00 3.53
5338 5940 1.408683 CGGAATGCCCTCTGAAATGGA 60.409 52.381 0.00 0.00 0.00 3.41
5339 5941 1.027357 CGGAATGCCCTCTGAAATGG 58.973 55.000 0.00 0.00 0.00 3.16
5340 5942 2.042686 TCGGAATGCCCTCTGAAATG 57.957 50.000 0.00 0.00 0.00 2.32
5341 5943 3.303351 AATCGGAATGCCCTCTGAAAT 57.697 42.857 0.00 0.00 34.41 2.17
5342 5944 2.806945 AATCGGAATGCCCTCTGAAA 57.193 45.000 0.00 0.00 34.41 2.69
5343 5945 2.643551 GAAATCGGAATGCCCTCTGAA 58.356 47.619 0.00 0.00 34.41 3.02
5344 5946 1.473257 CGAAATCGGAATGCCCTCTGA 60.473 52.381 0.00 0.00 35.20 3.27
5345 5947 0.940126 CGAAATCGGAATGCCCTCTG 59.060 55.000 0.00 0.00 35.37 3.35
5346 5948 0.815615 GCGAAATCGGAATGCCCTCT 60.816 55.000 4.84 0.00 40.23 3.69
5347 5949 0.815615 AGCGAAATCGGAATGCCCTC 60.816 55.000 4.84 0.00 40.23 4.30
5348 5950 0.468226 TAGCGAAATCGGAATGCCCT 59.532 50.000 4.84 0.00 40.23 5.19
5349 5951 0.868406 CTAGCGAAATCGGAATGCCC 59.132 55.000 4.84 0.00 40.23 5.36
5350 5952 1.583054 ACTAGCGAAATCGGAATGCC 58.417 50.000 4.84 0.00 40.23 4.40
5351 5953 3.987868 TGATACTAGCGAAATCGGAATGC 59.012 43.478 4.84 0.00 40.23 3.56
5352 5954 4.386049 GGTGATACTAGCGAAATCGGAATG 59.614 45.833 4.84 0.00 40.23 2.67
5353 5955 4.038763 TGGTGATACTAGCGAAATCGGAAT 59.961 41.667 4.84 0.00 40.23 3.01
5354 5956 3.382227 TGGTGATACTAGCGAAATCGGAA 59.618 43.478 4.84 0.00 40.23 4.30
5355 5957 2.953648 TGGTGATACTAGCGAAATCGGA 59.046 45.455 4.84 0.00 40.23 4.55
5356 5958 3.364889 TGGTGATACTAGCGAAATCGG 57.635 47.619 4.84 0.00 40.23 4.18
5357 5959 7.582435 AATAATGGTGATACTAGCGAAATCG 57.418 36.000 0.00 0.00 43.27 3.34
5360 5962 9.772973 ACATAAATAATGGTGATACTAGCGAAA 57.227 29.630 0.00 0.00 40.16 3.46
5361 5963 9.419297 GACATAAATAATGGTGATACTAGCGAA 57.581 33.333 0.00 0.00 40.16 4.70
5362 5964 8.581578 TGACATAAATAATGGTGATACTAGCGA 58.418 33.333 0.00 0.00 40.16 4.93
5363 5965 8.757164 TGACATAAATAATGGTGATACTAGCG 57.243 34.615 0.00 0.00 40.16 4.26
5382 5984 9.806305 CCCATGGGAGCAGATGTATTTGACATA 62.806 44.444 28.27 0.00 42.80 2.29
5384 5986 3.998913 TGGGAGCAGATGTATTTGACA 57.001 42.857 0.00 0.00 43.97 3.58
5385 5987 3.567164 CCATGGGAGCAGATGTATTTGAC 59.433 47.826 2.85 0.00 0.00 3.18
5386 5988 3.435457 CCCATGGGAGCAGATGTATTTGA 60.435 47.826 28.27 0.00 37.50 2.69
5387 5989 2.889045 CCCATGGGAGCAGATGTATTTG 59.111 50.000 28.27 0.00 37.50 2.32
5388 5990 3.234234 CCCATGGGAGCAGATGTATTT 57.766 47.619 28.27 0.00 37.50 1.40
5389 5991 2.965671 CCCATGGGAGCAGATGTATT 57.034 50.000 28.27 0.00 37.50 1.89
5402 6004 0.675633 GAAATCGGAATGCCCCATGG 59.324 55.000 4.14 4.14 0.00 3.66
5403 6005 0.675633 GGAAATCGGAATGCCCCATG 59.324 55.000 0.00 0.00 0.00 3.66
5404 6006 0.469892 GGGAAATCGGAATGCCCCAT 60.470 55.000 0.00 0.00 34.10 4.00
5405 6007 1.076339 GGGAAATCGGAATGCCCCA 60.076 57.895 0.00 0.00 34.10 4.96
5406 6008 0.476771 TAGGGAAATCGGAATGCCCC 59.523 55.000 5.41 3.08 39.68 5.80
5407 6009 1.143073 ACTAGGGAAATCGGAATGCCC 59.857 52.381 0.13 0.13 39.12 5.36
5408 6010 2.640316 ACTAGGGAAATCGGAATGCC 57.360 50.000 0.00 0.00 0.00 4.40
5409 6011 4.691216 GTGATACTAGGGAAATCGGAATGC 59.309 45.833 0.00 0.00 0.00 3.56
5410 6012 5.221641 TGGTGATACTAGGGAAATCGGAATG 60.222 44.000 0.00 0.00 0.00 2.67
5411 6013 4.905456 TGGTGATACTAGGGAAATCGGAAT 59.095 41.667 0.00 0.00 0.00 3.01
5412 6014 4.291792 TGGTGATACTAGGGAAATCGGAA 58.708 43.478 0.00 0.00 0.00 4.30
5413 6015 3.918566 TGGTGATACTAGGGAAATCGGA 58.081 45.455 0.00 0.00 0.00 4.55
5414 6016 4.891992 ATGGTGATACTAGGGAAATCGG 57.108 45.455 0.00 0.00 0.00 4.18
5415 6017 8.848474 AAATAATGGTGATACTAGGGAAATCG 57.152 34.615 0.00 0.00 0.00 3.34
5418 6020 9.515226 GCATAAATAATGGTGATACTAGGGAAA 57.485 33.333 0.00 0.00 35.99 3.13
5419 6021 8.107095 GGCATAAATAATGGTGATACTAGGGAA 58.893 37.037 0.00 0.00 35.99 3.97
5420 6022 7.238723 TGGCATAAATAATGGTGATACTAGGGA 59.761 37.037 0.00 0.00 35.99 4.20
5421 6023 7.402054 TGGCATAAATAATGGTGATACTAGGG 58.598 38.462 0.00 0.00 35.99 3.53
5422 6024 8.862325 TTGGCATAAATAATGGTGATACTAGG 57.138 34.615 0.00 0.00 35.99 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.