Multiple sequence alignment - TraesCS3D01G254900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G254900 | chr3D | 100.000 | 3545 | 0 | 0 | 1 | 3545 | 356625585 | 356622041 | 0.000000e+00 | 6547.0 |
1 | TraesCS3D01G254900 | chr3A | 93.377 | 2718 | 97 | 39 | 523 | 3174 | 475306846 | 475304146 | 0.000000e+00 | 3945.0 |
2 | TraesCS3D01G254900 | chr3A | 84.564 | 447 | 48 | 10 | 3105 | 3543 | 475303811 | 475303378 | 1.180000e-114 | 424.0 |
3 | TraesCS3D01G254900 | chr3A | 88.667 | 300 | 30 | 3 | 227 | 526 | 132123797 | 132123502 | 2.600000e-96 | 363.0 |
4 | TraesCS3D01G254900 | chr3A | 87.582 | 153 | 12 | 4 | 82 | 230 | 475306998 | 475306849 | 1.690000e-38 | 171.0 |
5 | TraesCS3D01G254900 | chr3A | 88.333 | 60 | 6 | 1 | 3361 | 3419 | 585572176 | 585572117 | 1.770000e-08 | 71.3 |
6 | TraesCS3D01G254900 | chr3B | 94.700 | 2302 | 58 | 28 | 680 | 2949 | 457636052 | 457633783 | 0.000000e+00 | 3517.0 |
7 | TraesCS3D01G254900 | chr3B | 88.141 | 312 | 24 | 5 | 3232 | 3543 | 457633317 | 457633019 | 3.360000e-95 | 359.0 |
8 | TraesCS3D01G254900 | chr3B | 87.768 | 327 | 13 | 3 | 227 | 526 | 249997323 | 249997649 | 1.210000e-94 | 357.0 |
9 | TraesCS3D01G254900 | chr3B | 87.838 | 222 | 22 | 5 | 2982 | 3198 | 457633699 | 457633478 | 4.540000e-64 | 255.0 |
10 | TraesCS3D01G254900 | chr1D | 90.975 | 1518 | 135 | 2 | 1019 | 2535 | 16504637 | 16506153 | 0.000000e+00 | 2043.0 |
11 | TraesCS3D01G254900 | chrUn | 90.372 | 1558 | 144 | 5 | 979 | 2535 | 2669499 | 2667947 | 0.000000e+00 | 2041.0 |
12 | TraesCS3D01G254900 | chr7D | 90.933 | 386 | 35 | 0 | 1322 | 1707 | 562417543 | 562417158 | 1.460000e-143 | 520.0 |
13 | TraesCS3D01G254900 | chr7D | 85.976 | 328 | 19 | 1 | 227 | 527 | 100765780 | 100765453 | 3.410000e-85 | 326.0 |
14 | TraesCS3D01G254900 | chr7D | 94.156 | 154 | 9 | 0 | 1212 | 1365 | 562417691 | 562417538 | 5.920000e-58 | 235.0 |
15 | TraesCS3D01G254900 | chr7A | 87.009 | 331 | 15 | 2 | 224 | 527 | 56192804 | 56193133 | 7.280000e-92 | 348.0 |
16 | TraesCS3D01G254900 | chr5A | 87.261 | 314 | 27 | 10 | 227 | 527 | 23125097 | 23125410 | 2.620000e-91 | 346.0 |
17 | TraesCS3D01G254900 | chr5A | 86.585 | 328 | 17 | 1 | 227 | 527 | 126216129 | 126216456 | 1.580000e-88 | 337.0 |
18 | TraesCS3D01G254900 | chr5B | 86.890 | 328 | 16 | 7 | 226 | 526 | 364445498 | 364445171 | 3.390000e-90 | 342.0 |
19 | TraesCS3D01G254900 | chr7B | 86.061 | 330 | 18 | 10 | 224 | 526 | 530307483 | 530307811 | 2.640000e-86 | 329.0 |
20 | TraesCS3D01G254900 | chr4B | 86.239 | 327 | 18 | 13 | 227 | 526 | 177706377 | 177706051 | 2.640000e-86 | 329.0 |
21 | TraesCS3D01G254900 | chr4B | 85.047 | 321 | 20 | 9 | 226 | 519 | 666659514 | 666659195 | 5.750000e-78 | 302.0 |
22 | TraesCS3D01G254900 | chr6B | 85.933 | 327 | 20 | 12 | 226 | 526 | 83500897 | 83501223 | 3.410000e-85 | 326.0 |
23 | TraesCS3D01G254900 | chr6B | 85.498 | 331 | 21 | 1 | 224 | 527 | 163550053 | 163550383 | 1.590000e-83 | 320.0 |
24 | TraesCS3D01G254900 | chr6B | 84.000 | 325 | 24 | 2 | 231 | 527 | 544693613 | 544693937 | 1.610000e-73 | 287.0 |
25 | TraesCS3D01G254900 | chr6A | 85.671 | 328 | 20 | 7 | 227 | 527 | 471418853 | 471419180 | 1.590000e-83 | 320.0 |
26 | TraesCS3D01G254900 | chr4A | 85.410 | 329 | 21 | 1 | 227 | 528 | 435607938 | 435608266 | 2.050000e-82 | 316.0 |
27 | TraesCS3D01G254900 | chr2B | 84.956 | 339 | 21 | 11 | 219 | 530 | 340977314 | 340976979 | 2.050000e-82 | 316.0 |
28 | TraesCS3D01G254900 | chr1A | 93.525 | 139 | 9 | 0 | 389 | 527 | 2314238 | 2314100 | 1.290000e-49 | 207.0 |
29 | TraesCS3D01G254900 | chr1A | 77.889 | 199 | 27 | 8 | 3351 | 3533 | 590966772 | 590966969 | 1.350000e-19 | 108.0 |
30 | TraesCS3D01G254900 | chr5D | 100.000 | 28 | 0 | 0 | 3097 | 3124 | 369876175 | 369876202 | 6.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G254900 | chr3D | 356622041 | 356625585 | 3544 | True | 6547.000000 | 6547 | 100.000000 | 1 | 3545 | 1 | chr3D.!!$R1 | 3544 |
1 | TraesCS3D01G254900 | chr3A | 475303378 | 475306998 | 3620 | True | 1513.333333 | 3945 | 88.507667 | 82 | 3543 | 3 | chr3A.!!$R3 | 3461 |
2 | TraesCS3D01G254900 | chr3B | 457633019 | 457636052 | 3033 | True | 1377.000000 | 3517 | 90.226333 | 680 | 3543 | 3 | chr3B.!!$R1 | 2863 |
3 | TraesCS3D01G254900 | chr1D | 16504637 | 16506153 | 1516 | False | 2043.000000 | 2043 | 90.975000 | 1019 | 2535 | 1 | chr1D.!!$F1 | 1516 |
4 | TraesCS3D01G254900 | chrUn | 2667947 | 2669499 | 1552 | True | 2041.000000 | 2041 | 90.372000 | 979 | 2535 | 1 | chrUn.!!$R1 | 1556 |
5 | TraesCS3D01G254900 | chr7D | 562417158 | 562417691 | 533 | True | 377.500000 | 520 | 92.544500 | 1212 | 1707 | 2 | chr7D.!!$R2 | 495 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
782 | 821 | 0.035725 | CCTTCCACTTACCCGGTTCC | 60.036 | 60.0 | 0.0 | 0.0 | 0.0 | 3.62 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2702 | 2796 | 1.792367 | GCGAGCAAACCAAATCCAAAC | 59.208 | 47.619 | 0.0 | 0.0 | 0.0 | 2.93 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
25 | 26 | 8.879342 | ATAAGTGTATGATCTCGAAAAAGGAG | 57.121 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
26 | 27 | 5.665459 | AGTGTATGATCTCGAAAAAGGAGG | 58.335 | 41.667 | 0.00 | 0.00 | 32.34 | 4.30 |
27 | 28 | 5.422331 | AGTGTATGATCTCGAAAAAGGAGGA | 59.578 | 40.000 | 0.00 | 0.00 | 32.34 | 3.71 |
28 | 29 | 5.520649 | GTGTATGATCTCGAAAAAGGAGGAC | 59.479 | 44.000 | 0.00 | 0.00 | 32.34 | 3.85 |
29 | 30 | 4.826274 | ATGATCTCGAAAAAGGAGGACA | 57.174 | 40.909 | 0.00 | 0.00 | 32.34 | 4.02 |
30 | 31 | 4.617253 | TGATCTCGAAAAAGGAGGACAA | 57.383 | 40.909 | 0.00 | 0.00 | 32.34 | 3.18 |
31 | 32 | 4.968259 | TGATCTCGAAAAAGGAGGACAAA | 58.032 | 39.130 | 0.00 | 0.00 | 32.34 | 2.83 |
32 | 33 | 4.997395 | TGATCTCGAAAAAGGAGGACAAAG | 59.003 | 41.667 | 0.00 | 0.00 | 32.34 | 2.77 |
33 | 34 | 4.417426 | TCTCGAAAAAGGAGGACAAAGT | 57.583 | 40.909 | 0.00 | 0.00 | 32.34 | 2.66 |
34 | 35 | 5.540400 | TCTCGAAAAAGGAGGACAAAGTA | 57.460 | 39.130 | 0.00 | 0.00 | 32.34 | 2.24 |
35 | 36 | 6.110411 | TCTCGAAAAAGGAGGACAAAGTAT | 57.890 | 37.500 | 0.00 | 0.00 | 32.34 | 2.12 |
36 | 37 | 5.932303 | TCTCGAAAAAGGAGGACAAAGTATG | 59.068 | 40.000 | 0.00 | 0.00 | 32.34 | 2.39 |
37 | 38 | 4.454504 | TCGAAAAAGGAGGACAAAGTATGC | 59.545 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
38 | 39 | 4.379499 | CGAAAAAGGAGGACAAAGTATGCC | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
39 | 40 | 3.806949 | AAAGGAGGACAAAGTATGCCA | 57.193 | 42.857 | 0.00 | 0.00 | 0.00 | 4.92 |
40 | 41 | 4.322057 | AAAGGAGGACAAAGTATGCCAT | 57.678 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
41 | 42 | 5.450818 | AAAGGAGGACAAAGTATGCCATA | 57.549 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
42 | 43 | 5.653255 | AAGGAGGACAAAGTATGCCATAT | 57.347 | 39.130 | 0.00 | 0.00 | 0.00 | 1.78 |
43 | 44 | 4.978099 | AGGAGGACAAAGTATGCCATATG | 58.022 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
44 | 45 | 3.503748 | GGAGGACAAAGTATGCCATATGC | 59.496 | 47.826 | 0.00 | 0.00 | 41.77 | 3.14 |
45 | 46 | 4.392940 | GAGGACAAAGTATGCCATATGCT | 58.607 | 43.478 | 0.00 | 0.00 | 42.00 | 3.79 |
46 | 47 | 5.513094 | GGAGGACAAAGTATGCCATATGCTA | 60.513 | 44.000 | 0.00 | 0.00 | 42.00 | 3.49 |
47 | 48 | 5.555017 | AGGACAAAGTATGCCATATGCTAG | 58.445 | 41.667 | 0.00 | 0.00 | 42.00 | 3.42 |
48 | 49 | 4.154918 | GGACAAAGTATGCCATATGCTAGC | 59.845 | 45.833 | 8.10 | 8.10 | 42.00 | 3.42 |
49 | 50 | 4.978099 | ACAAAGTATGCCATATGCTAGCT | 58.022 | 39.130 | 17.23 | 4.07 | 42.00 | 3.32 |
50 | 51 | 6.114187 | ACAAAGTATGCCATATGCTAGCTA | 57.886 | 37.500 | 17.23 | 6.33 | 42.00 | 3.32 |
51 | 52 | 6.715280 | ACAAAGTATGCCATATGCTAGCTAT | 58.285 | 36.000 | 17.23 | 10.27 | 42.00 | 2.97 |
52 | 53 | 6.596888 | ACAAAGTATGCCATATGCTAGCTATG | 59.403 | 38.462 | 17.23 | 18.53 | 42.00 | 2.23 |
53 | 54 | 4.701765 | AGTATGCCATATGCTAGCTATGC | 58.298 | 43.478 | 17.23 | 15.22 | 42.00 | 3.14 |
54 | 55 | 3.928005 | ATGCCATATGCTAGCTATGCT | 57.072 | 42.857 | 17.23 | 6.37 | 42.00 | 3.79 |
55 | 56 | 5.600069 | AGTATGCCATATGCTAGCTATGCTA | 59.400 | 40.000 | 17.23 | 11.80 | 42.00 | 3.49 |
68 | 69 | 4.329462 | GCTATGCTAGCCTAGTTTGTCT | 57.671 | 45.455 | 22.98 | 0.00 | 45.95 | 3.41 |
69 | 70 | 5.455056 | GCTATGCTAGCCTAGTTTGTCTA | 57.545 | 43.478 | 22.98 | 0.00 | 45.95 | 2.59 |
70 | 71 | 5.844004 | GCTATGCTAGCCTAGTTTGTCTAA | 58.156 | 41.667 | 22.98 | 0.00 | 45.95 | 2.10 |
71 | 72 | 6.281405 | GCTATGCTAGCCTAGTTTGTCTAAA | 58.719 | 40.000 | 22.98 | 0.00 | 45.95 | 1.85 |
72 | 73 | 6.761714 | GCTATGCTAGCCTAGTTTGTCTAAAA | 59.238 | 38.462 | 22.98 | 0.00 | 45.95 | 1.52 |
73 | 74 | 7.280205 | GCTATGCTAGCCTAGTTTGTCTAAAAA | 59.720 | 37.037 | 22.98 | 0.00 | 45.95 | 1.94 |
136 | 141 | 3.154710 | CAGACTATACATGCTCCCCGTA | 58.845 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
169 | 174 | 1.669779 | CGTACGGAGTTAGTAGCTGCT | 59.330 | 52.381 | 9.94 | 9.94 | 37.78 | 4.24 |
176 | 181 | 0.095417 | GTTAGTAGCTGCTGCGTTGC | 59.905 | 55.000 | 15.31 | 0.00 | 45.42 | 4.17 |
197 | 202 | 1.078143 | GGGAGCACGCTGAAATCCT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
199 | 204 | 0.674895 | GGAGCACGCTGAAATCCTGT | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
221 | 226 | 1.082561 | CATTCATCGCCATTCGCCG | 60.083 | 57.895 | 0.00 | 0.00 | 38.27 | 6.46 |
230 | 235 | 1.071605 | GCCATTCGCCGATGATACTC | 58.928 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
232 | 237 | 1.673033 | CCATTCGCCGATGATACTCCC | 60.673 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
233 | 238 | 1.273606 | CATTCGCCGATGATACTCCCT | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
234 | 239 | 0.959553 | TTCGCCGATGATACTCCCTC | 59.040 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
235 | 240 | 0.894184 | TCGCCGATGATACTCCCTCC | 60.894 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
236 | 241 | 0.896019 | CGCCGATGATACTCCCTCCT | 60.896 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
237 | 242 | 1.343069 | GCCGATGATACTCCCTCCTT | 58.657 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
238 | 243 | 1.694696 | GCCGATGATACTCCCTCCTTT | 59.305 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
239 | 244 | 2.289133 | GCCGATGATACTCCCTCCTTTC | 60.289 | 54.545 | 0.00 | 0.00 | 0.00 | 2.62 |
240 | 245 | 2.300437 | CCGATGATACTCCCTCCTTTCC | 59.700 | 54.545 | 0.00 | 0.00 | 0.00 | 3.13 |
241 | 246 | 2.029828 | CGATGATACTCCCTCCTTTCCG | 60.030 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
242 | 247 | 2.840640 | TGATACTCCCTCCTTTCCGA | 57.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
243 | 248 | 3.330126 | TGATACTCCCTCCTTTCCGAT | 57.670 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
244 | 249 | 2.965831 | TGATACTCCCTCCTTTCCGATG | 59.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
245 | 250 | 2.544844 | TACTCCCTCCTTTCCGATGT | 57.455 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
246 | 251 | 2.544844 | ACTCCCTCCTTTCCGATGTA | 57.455 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
247 | 252 | 3.047695 | ACTCCCTCCTTTCCGATGTAT | 57.952 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
248 | 253 | 4.194678 | ACTCCCTCCTTTCCGATGTATA | 57.805 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
249 | 254 | 4.153411 | ACTCCCTCCTTTCCGATGTATAG | 58.847 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
250 | 255 | 3.507411 | TCCCTCCTTTCCGATGTATAGG | 58.493 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
251 | 256 | 2.567615 | CCCTCCTTTCCGATGTATAGGG | 59.432 | 54.545 | 0.00 | 0.00 | 36.73 | 3.53 |
252 | 257 | 2.028020 | CCTCCTTTCCGATGTATAGGGC | 60.028 | 54.545 | 0.00 | 0.00 | 0.00 | 5.19 |
253 | 258 | 2.900546 | CTCCTTTCCGATGTATAGGGCT | 59.099 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
254 | 259 | 3.314693 | TCCTTTCCGATGTATAGGGCTT | 58.685 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
255 | 260 | 4.485875 | TCCTTTCCGATGTATAGGGCTTA | 58.514 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
256 | 261 | 4.903049 | TCCTTTCCGATGTATAGGGCTTAA | 59.097 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
257 | 262 | 5.546499 | TCCTTTCCGATGTATAGGGCTTAAT | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
258 | 263 | 6.043938 | TCCTTTCCGATGTATAGGGCTTAATT | 59.956 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
259 | 264 | 6.715264 | CCTTTCCGATGTATAGGGCTTAATTT | 59.285 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
260 | 265 | 7.881232 | CCTTTCCGATGTATAGGGCTTAATTTA | 59.119 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
261 | 266 | 9.280174 | CTTTCCGATGTATAGGGCTTAATTTAA | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
262 | 267 | 9.629878 | TTTCCGATGTATAGGGCTTAATTTAAA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
263 | 268 | 9.629878 | TTCCGATGTATAGGGCTTAATTTAAAA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
264 | 269 | 9.629878 | TCCGATGTATAGGGCTTAATTTAAAAA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
272 | 277 | 7.790782 | AGGGCTTAATTTAAAAATCTCACCA | 57.209 | 32.000 | 0.00 | 0.00 | 0.00 | 4.17 |
273 | 278 | 8.201242 | AGGGCTTAATTTAAAAATCTCACCAA | 57.799 | 30.769 | 0.00 | 0.00 | 0.00 | 3.67 |
274 | 279 | 8.094548 | AGGGCTTAATTTAAAAATCTCACCAAC | 58.905 | 33.333 | 0.00 | 0.00 | 0.00 | 3.77 |
275 | 280 | 7.333423 | GGGCTTAATTTAAAAATCTCACCAACC | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 3.77 |
276 | 281 | 7.875554 | GGCTTAATTTAAAAATCTCACCAACCA | 59.124 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
277 | 282 | 9.267084 | GCTTAATTTAAAAATCTCACCAACCAA | 57.733 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
279 | 284 | 9.771534 | TTAATTTAAAAATCTCACCAACCAAGG | 57.228 | 29.630 | 0.00 | 0.00 | 0.00 | 3.61 |
280 | 285 | 6.800072 | TTTAAAAATCTCACCAACCAAGGT | 57.200 | 33.333 | 0.00 | 0.00 | 44.48 | 3.50 |
281 | 286 | 7.899648 | TTTAAAAATCTCACCAACCAAGGTA | 57.100 | 32.000 | 0.00 | 0.00 | 40.77 | 3.08 |
282 | 287 | 8.485578 | TTTAAAAATCTCACCAACCAAGGTAT | 57.514 | 30.769 | 0.00 | 0.00 | 40.77 | 2.73 |
283 | 288 | 9.589461 | TTTAAAAATCTCACCAACCAAGGTATA | 57.411 | 29.630 | 0.00 | 0.00 | 40.77 | 1.47 |
284 | 289 | 9.762381 | TTAAAAATCTCACCAACCAAGGTATAT | 57.238 | 29.630 | 0.00 | 0.00 | 40.77 | 0.86 |
285 | 290 | 7.645058 | AAAATCTCACCAACCAAGGTATATG | 57.355 | 36.000 | 0.00 | 0.00 | 40.77 | 1.78 |
286 | 291 | 6.575244 | AATCTCACCAACCAAGGTATATGA | 57.425 | 37.500 | 0.00 | 0.00 | 40.77 | 2.15 |
287 | 292 | 6.770286 | ATCTCACCAACCAAGGTATATGAT | 57.230 | 37.500 | 0.00 | 0.00 | 40.77 | 2.45 |
288 | 293 | 5.928976 | TCTCACCAACCAAGGTATATGATG | 58.071 | 41.667 | 0.00 | 0.00 | 40.77 | 3.07 |
289 | 294 | 5.665360 | TCTCACCAACCAAGGTATATGATGA | 59.335 | 40.000 | 0.00 | 0.00 | 40.77 | 2.92 |
290 | 295 | 5.928976 | TCACCAACCAAGGTATATGATGAG | 58.071 | 41.667 | 0.00 | 0.00 | 40.77 | 2.90 |
291 | 296 | 5.428457 | TCACCAACCAAGGTATATGATGAGT | 59.572 | 40.000 | 0.00 | 0.00 | 40.77 | 3.41 |
292 | 297 | 5.528690 | CACCAACCAAGGTATATGATGAGTG | 59.471 | 44.000 | 0.00 | 0.00 | 40.77 | 3.51 |
293 | 298 | 5.065914 | CCAACCAAGGTATATGATGAGTGG | 58.934 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
294 | 299 | 5.397899 | CCAACCAAGGTATATGATGAGTGGT | 60.398 | 44.000 | 0.00 | 0.00 | 39.79 | 4.16 |
295 | 300 | 5.296151 | ACCAAGGTATATGATGAGTGGTG | 57.704 | 43.478 | 0.00 | 0.00 | 36.77 | 4.17 |
296 | 301 | 4.103153 | ACCAAGGTATATGATGAGTGGTGG | 59.897 | 45.833 | 0.00 | 0.00 | 36.77 | 4.61 |
297 | 302 | 4.347876 | CCAAGGTATATGATGAGTGGTGGA | 59.652 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
298 | 303 | 5.163205 | CCAAGGTATATGATGAGTGGTGGAA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
299 | 304 | 6.466326 | CCAAGGTATATGATGAGTGGTGGAAT | 60.466 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
300 | 305 | 7.256655 | CCAAGGTATATGATGAGTGGTGGAATA | 60.257 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
301 | 306 | 8.324306 | CAAGGTATATGATGAGTGGTGGAATAT | 58.676 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
302 | 307 | 8.454859 | AGGTATATGATGAGTGGTGGAATATT | 57.545 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
303 | 308 | 8.894592 | AGGTATATGATGAGTGGTGGAATATTT | 58.105 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
304 | 309 | 9.520515 | GGTATATGATGAGTGGTGGAATATTTT | 57.479 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
328 | 333 | 9.771534 | TTTTTATAGTTTGCAAAAGCACCTAAT | 57.228 | 25.926 | 14.67 | 4.30 | 0.00 | 1.73 |
329 | 334 | 9.771534 | TTTTATAGTTTGCAAAAGCACCTAATT | 57.228 | 25.926 | 14.67 | 0.00 | 0.00 | 1.40 |
333 | 338 | 7.656707 | AGTTTGCAAAAGCACCTAATTAATG | 57.343 | 32.000 | 14.67 | 0.00 | 0.00 | 1.90 |
334 | 339 | 6.147656 | AGTTTGCAAAAGCACCTAATTAATGC | 59.852 | 34.615 | 14.67 | 11.70 | 39.74 | 3.56 |
342 | 347 | 6.840780 | AGCACCTAATTAATGCTCTTGTTT | 57.159 | 33.333 | 15.10 | 0.00 | 46.68 | 2.83 |
343 | 348 | 7.232118 | AGCACCTAATTAATGCTCTTGTTTT | 57.768 | 32.000 | 15.10 | 0.00 | 46.68 | 2.43 |
344 | 349 | 7.670364 | AGCACCTAATTAATGCTCTTGTTTTT | 58.330 | 30.769 | 15.10 | 0.00 | 46.68 | 1.94 |
345 | 350 | 7.814587 | AGCACCTAATTAATGCTCTTGTTTTTC | 59.185 | 33.333 | 15.10 | 0.00 | 46.68 | 2.29 |
346 | 351 | 7.814587 | GCACCTAATTAATGCTCTTGTTTTTCT | 59.185 | 33.333 | 12.17 | 0.00 | 36.40 | 2.52 |
347 | 352 | 9.346725 | CACCTAATTAATGCTCTTGTTTTTCTC | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
348 | 353 | 9.077885 | ACCTAATTAATGCTCTTGTTTTTCTCA | 57.922 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
349 | 354 | 9.912634 | CCTAATTAATGCTCTTGTTTTTCTCAA | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
428 | 433 | 5.402997 | TGCAATGATTTAATGCACCTTGA | 57.597 | 34.783 | 0.00 | 0.00 | 44.52 | 3.02 |
429 | 434 | 5.791666 | TGCAATGATTTAATGCACCTTGAA | 58.208 | 33.333 | 0.00 | 0.00 | 44.52 | 2.69 |
430 | 435 | 6.228995 | TGCAATGATTTAATGCACCTTGAAA | 58.771 | 32.000 | 0.00 | 0.00 | 44.52 | 2.69 |
431 | 436 | 6.879993 | TGCAATGATTTAATGCACCTTGAAAT | 59.120 | 30.769 | 0.00 | 0.00 | 44.52 | 2.17 |
432 | 437 | 7.064847 | TGCAATGATTTAATGCACCTTGAAATC | 59.935 | 33.333 | 0.00 | 1.22 | 44.52 | 2.17 |
433 | 438 | 7.279313 | GCAATGATTTAATGCACCTTGAAATCT | 59.721 | 33.333 | 15.69 | 5.35 | 39.81 | 2.40 |
434 | 439 | 8.600625 | CAATGATTTAATGCACCTTGAAATCTG | 58.399 | 33.333 | 15.69 | 7.90 | 37.39 | 2.90 |
435 | 440 | 7.465353 | TGATTTAATGCACCTTGAAATCTGA | 57.535 | 32.000 | 15.69 | 0.00 | 37.39 | 3.27 |
436 | 441 | 7.894708 | TGATTTAATGCACCTTGAAATCTGAA | 58.105 | 30.769 | 15.69 | 1.53 | 37.39 | 3.02 |
437 | 442 | 7.814107 | TGATTTAATGCACCTTGAAATCTGAAC | 59.186 | 33.333 | 15.69 | 0.00 | 37.39 | 3.18 |
438 | 443 | 6.647334 | TTAATGCACCTTGAAATCTGAACA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
439 | 444 | 5.733620 | AATGCACCTTGAAATCTGAACAT | 57.266 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
440 | 445 | 4.508461 | TGCACCTTGAAATCTGAACATG | 57.492 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
441 | 446 | 3.890756 | TGCACCTTGAAATCTGAACATGT | 59.109 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
442 | 447 | 4.232221 | GCACCTTGAAATCTGAACATGTG | 58.768 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
443 | 448 | 4.022935 | GCACCTTGAAATCTGAACATGTGA | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
444 | 449 | 5.336213 | GCACCTTGAAATCTGAACATGTGAT | 60.336 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
445 | 450 | 6.127925 | GCACCTTGAAATCTGAACATGTGATA | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
446 | 451 | 7.575532 | GCACCTTGAAATCTGAACATGTGATAA | 60.576 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
447 | 452 | 8.298854 | CACCTTGAAATCTGAACATGTGATAAA | 58.701 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
448 | 453 | 8.517878 | ACCTTGAAATCTGAACATGTGATAAAG | 58.482 | 33.333 | 0.00 | 3.96 | 0.00 | 1.85 |
449 | 454 | 8.733458 | CCTTGAAATCTGAACATGTGATAAAGA | 58.267 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
451 | 456 | 9.897744 | TTGAAATCTGAACATGTGATAAAGAAC | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
452 | 457 | 9.065798 | TGAAATCTGAACATGTGATAAAGAACA | 57.934 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
453 | 458 | 9.897744 | GAAATCTGAACATGTGATAAAGAACAA | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
454 | 459 | 9.683069 | AAATCTGAACATGTGATAAAGAACAAC | 57.317 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
455 | 460 | 7.202016 | TCTGAACATGTGATAAAGAACAACC | 57.798 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
456 | 461 | 6.770303 | TCTGAACATGTGATAAAGAACAACCA | 59.230 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
457 | 462 | 7.284261 | TCTGAACATGTGATAAAGAACAACCAA | 59.716 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
458 | 463 | 7.776107 | TGAACATGTGATAAAGAACAACCAAA | 58.224 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
459 | 464 | 8.420222 | TGAACATGTGATAAAGAACAACCAAAT | 58.580 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
460 | 465 | 9.260002 | GAACATGTGATAAAGAACAACCAAATT | 57.740 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
464 | 469 | 8.810652 | TGTGATAAAGAACAACCAAATTAAGC | 57.189 | 30.769 | 0.00 | 0.00 | 0.00 | 3.09 |
465 | 470 | 7.870445 | TGTGATAAAGAACAACCAAATTAAGCC | 59.130 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
466 | 471 | 8.088365 | GTGATAAAGAACAACCAAATTAAGCCT | 58.912 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
467 | 472 | 8.646900 | TGATAAAGAACAACCAAATTAAGCCTT | 58.353 | 29.630 | 0.00 | 0.00 | 0.00 | 4.35 |
476 | 481 | 9.665719 | ACAACCAAATTAAGCCTTATAAAATGG | 57.334 | 29.630 | 0.00 | 0.00 | 32.54 | 3.16 |
477 | 482 | 9.883142 | CAACCAAATTAAGCCTTATAAAATGGA | 57.117 | 29.630 | 0.00 | 0.00 | 31.58 | 3.41 |
512 | 517 | 9.856162 | AATTTTAAGATAAGCCCTATAAACCGA | 57.144 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
513 | 518 | 9.856162 | ATTTTAAGATAAGCCCTATAAACCGAA | 57.144 | 29.630 | 0.00 | 0.00 | 0.00 | 4.30 |
514 | 519 | 9.683870 | TTTTAAGATAAGCCCTATAAACCGAAA | 57.316 | 29.630 | 0.00 | 0.00 | 0.00 | 3.46 |
515 | 520 | 9.683870 | TTTAAGATAAGCCCTATAAACCGAAAA | 57.316 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
516 | 521 | 7.803279 | AAGATAAGCCCTATAAACCGAAAAG | 57.197 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
518 | 523 | 4.579647 | AAGCCCTATAAACCGAAAAGGA | 57.420 | 40.909 | 0.00 | 0.00 | 45.00 | 3.36 |
519 | 524 | 4.152284 | AGCCCTATAAACCGAAAAGGAG | 57.848 | 45.455 | 0.00 | 0.00 | 45.00 | 3.69 |
520 | 525 | 3.118000 | AGCCCTATAAACCGAAAAGGAGG | 60.118 | 47.826 | 0.00 | 0.00 | 45.00 | 4.30 |
521 | 526 | 3.816994 | CCCTATAAACCGAAAAGGAGGG | 58.183 | 50.000 | 0.00 | 0.00 | 45.00 | 4.30 |
532 | 537 | 3.617263 | CGAAAAGGAGGGAGTATTTCACG | 59.383 | 47.826 | 0.00 | 0.00 | 33.09 | 4.35 |
534 | 539 | 1.497161 | AGGAGGGAGTATTTCACGGG | 58.503 | 55.000 | 0.00 | 0.00 | 33.09 | 5.28 |
537 | 542 | 0.909623 | AGGGAGTATTTCACGGGTGG | 59.090 | 55.000 | 0.00 | 0.00 | 33.09 | 4.61 |
585 | 590 | 1.263356 | TTCCACTACCCGAGGAACTG | 58.737 | 55.000 | 0.00 | 0.00 | 41.55 | 3.16 |
587 | 592 | 0.531200 | CCACTACCCGAGGAACTGAC | 59.469 | 60.000 | 0.00 | 0.00 | 41.55 | 3.51 |
591 | 596 | 0.679002 | TACCCGAGGAACTGACCGAG | 60.679 | 60.000 | 0.00 | 0.00 | 41.55 | 4.63 |
633 | 639 | 1.950909 | CACACGATCTCCTCTACCCTC | 59.049 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
681 | 698 | 4.924462 | ACGCCGTTTCAAAAGAAAAAGAAA | 59.076 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
715 | 746 | 1.650363 | CGAACAAAACCCCGTGTCC | 59.350 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
772 | 811 | 4.660938 | GGTGCCGGCCTTCCACTT | 62.661 | 66.667 | 26.77 | 0.00 | 0.00 | 3.16 |
777 | 816 | 2.125269 | CGGCCTTCCACTTACCCG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
782 | 821 | 0.035725 | CCTTCCACTTACCCGGTTCC | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
957 | 996 | 1.002900 | CCAAGTTGCCAACACTACACG | 60.003 | 52.381 | 10.69 | 0.00 | 0.00 | 4.49 |
976 | 1015 | 2.396955 | GGTGTAGCAGCAGCAGCAG | 61.397 | 63.158 | 12.92 | 0.00 | 45.49 | 4.24 |
1392 | 1469 | 2.037053 | CTCGGCCATCATCGACTCT | 58.963 | 57.895 | 2.24 | 0.00 | 0.00 | 3.24 |
2687 | 2781 | 4.712425 | GCCGGCTTTGTGCTGCTG | 62.712 | 66.667 | 22.15 | 0.00 | 46.34 | 4.41 |
2688 | 2782 | 4.712425 | CCGGCTTTGTGCTGCTGC | 62.712 | 66.667 | 8.89 | 8.89 | 46.34 | 5.25 |
2689 | 2783 | 3.667282 | CGGCTTTGTGCTGCTGCT | 61.667 | 61.111 | 17.00 | 0.00 | 41.61 | 4.24 |
2702 | 2796 | 2.706273 | CTGCTGCTTCTAGTACGTACG | 58.294 | 52.381 | 19.49 | 15.01 | 0.00 | 3.67 |
2708 | 2802 | 3.501828 | TGCTTCTAGTACGTACGTTTGGA | 59.498 | 43.478 | 27.92 | 18.64 | 0.00 | 3.53 |
2726 | 2821 | 2.227865 | TGGATTTGGTTTGCTCGCTTAC | 59.772 | 45.455 | 0.00 | 0.00 | 0.00 | 2.34 |
2727 | 2822 | 2.415491 | GGATTTGGTTTGCTCGCTTACC | 60.415 | 50.000 | 6.20 | 6.20 | 0.00 | 2.85 |
2729 | 2824 | 1.975660 | TTGGTTTGCTCGCTTACCTT | 58.024 | 45.000 | 12.03 | 0.00 | 0.00 | 3.50 |
2735 | 2830 | 4.436986 | GGTTTGCTCGCTTACCTTTGATAC | 60.437 | 45.833 | 5.98 | 0.00 | 0.00 | 2.24 |
2740 | 2835 | 2.100252 | TCGCTTACCTTTGATACTCCGG | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2761 | 2857 | 4.210331 | GGATGTTGCTGTTTATGATCCCT | 58.790 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2780 | 2876 | 8.141268 | TGATCCCTTTGTGAAATACAGTTTTTC | 58.859 | 33.333 | 9.01 | 9.01 | 41.10 | 2.29 |
2781 | 2877 | 7.411486 | TCCCTTTGTGAAATACAGTTTTTCA | 57.589 | 32.000 | 13.43 | 13.43 | 41.10 | 2.69 |
2810 | 2912 | 5.867174 | TGTGAGACGTGAAATATCGATGTTT | 59.133 | 36.000 | 18.63 | 18.63 | 0.00 | 2.83 |
2911 | 3013 | 1.280133 | CAGCAGGGATCCAAGTTCTCA | 59.720 | 52.381 | 15.23 | 0.00 | 0.00 | 3.27 |
2925 | 3027 | 4.427096 | AGTTCTCATGTCACGTCTACAG | 57.573 | 45.455 | 6.44 | 0.41 | 0.00 | 2.74 |
2949 | 3051 | 6.490040 | AGCAGAGAGACCTATCTTACTTGATC | 59.510 | 42.308 | 0.00 | 0.00 | 34.34 | 2.92 |
2951 | 3053 | 6.775142 | CAGAGAGACCTATCTTACTTGATCCA | 59.225 | 42.308 | 0.00 | 0.00 | 34.34 | 3.41 |
2953 | 3055 | 7.505585 | AGAGAGACCTATCTTACTTGATCCAAG | 59.494 | 40.741 | 5.26 | 5.26 | 40.29 | 3.61 |
2955 | 3057 | 7.621683 | AGAGACCTATCTTACTTGATCCAAGTT | 59.378 | 37.037 | 16.21 | 2.99 | 42.75 | 2.66 |
2956 | 3058 | 7.923878 | GAGACCTATCTTACTTGATCCAAGTTC | 59.076 | 40.741 | 16.21 | 6.70 | 42.75 | 3.01 |
2966 | 3068 | 3.340928 | TGATCCAAGTTCTCATGCACTG | 58.659 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
2967 | 3069 | 2.936919 | TCCAAGTTCTCATGCACTGT | 57.063 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2968 | 3070 | 3.213206 | TCCAAGTTCTCATGCACTGTT | 57.787 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
2969 | 3071 | 3.141398 | TCCAAGTTCTCATGCACTGTTC | 58.859 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2970 | 3072 | 3.144506 | CCAAGTTCTCATGCACTGTTCT | 58.855 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2971 | 3073 | 3.188048 | CCAAGTTCTCATGCACTGTTCTC | 59.812 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
2973 | 3075 | 4.283363 | AGTTCTCATGCACTGTTCTCAT | 57.717 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
2975 | 3077 | 3.690475 | TCTCATGCACTGTTCTCATGT | 57.310 | 42.857 | 11.65 | 0.00 | 38.82 | 3.21 |
2976 | 3078 | 3.593096 | TCTCATGCACTGTTCTCATGTC | 58.407 | 45.455 | 11.65 | 0.00 | 38.82 | 3.06 |
2978 | 3080 | 3.069289 | TCATGCACTGTTCTCATGTCAC | 58.931 | 45.455 | 11.65 | 0.00 | 38.82 | 3.67 |
2979 | 3081 | 1.501169 | TGCACTGTTCTCATGTCACG | 58.499 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2980 | 3082 | 1.202521 | TGCACTGTTCTCATGTCACGT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
3055 | 3208 | 1.063183 | GGCCCTCTTATCTGGCTGAT | 58.937 | 55.000 | 11.75 | 11.75 | 44.71 | 2.90 |
3059 | 3212 | 3.686691 | GCCCTCTTATCTGGCTGATGTTT | 60.687 | 47.826 | 16.17 | 0.00 | 42.01 | 2.83 |
3091 | 3244 | 2.031560 | GTGGCATATGCGAACGAATTCA | 59.968 | 45.455 | 21.04 | 7.44 | 43.26 | 2.57 |
3124 | 3278 | 1.256812 | CGAGGGGTGGCATTTTCTTT | 58.743 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3129 | 3283 | 1.616374 | GGGTGGCATTTTCTTTCCGAA | 59.384 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
3147 | 3301 | 5.293560 | TCCGAAAAGGCCATTTTTGTTTAG | 58.706 | 37.500 | 7.50 | 2.51 | 41.24 | 1.85 |
3160 | 3314 | 7.951565 | CCATTTTTGTTTAGAAATTGTCATCGC | 59.048 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
3174 | 3328 | 2.869192 | GTCATCGCTTGATCTTTCCTCC | 59.131 | 50.000 | 0.00 | 0.00 | 36.54 | 4.30 |
3175 | 3329 | 2.768527 | TCATCGCTTGATCTTTCCTCCT | 59.231 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
3176 | 3330 | 2.969628 | TCGCTTGATCTTTCCTCCTC | 57.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3206 | 3767 | 1.406898 | TCAAATGACGTTTGCTTGCCA | 59.593 | 42.857 | 14.21 | 0.00 | 45.45 | 4.92 |
3211 | 3772 | 3.222855 | CGTTTGCTTGCCACCCCA | 61.223 | 61.111 | 0.00 | 0.00 | 0.00 | 4.96 |
3218 | 3783 | 3.106609 | TTGCCACCCCACTCCCAA | 61.107 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
3219 | 3784 | 3.444818 | TTGCCACCCCACTCCCAAC | 62.445 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
3230 | 3795 | 1.006102 | CTCCCAACTGACGTTCGCT | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.93 |
3240 | 3928 | 3.050619 | CTGACGTTCGCTGGGTAATATC | 58.949 | 50.000 | 0.00 | 0.00 | 0.00 | 1.63 |
3244 | 3932 | 2.482316 | CGTTCGCTGGGTAATATCACCA | 60.482 | 50.000 | 0.00 | 0.00 | 40.65 | 4.17 |
3335 | 4023 | 7.879160 | ACTCATCCAAATGTTTGCATACAAAAT | 59.121 | 29.630 | 14.07 | 1.39 | 46.94 | 1.82 |
3459 | 4147 | 8.806429 | ACATGACATACAATCCAAATGACTAA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
3460 | 4148 | 8.896744 | ACATGACATACAATCCAAATGACTAAG | 58.103 | 33.333 | 0.00 | 0.00 | 0.00 | 2.18 |
3461 | 4149 | 9.112725 | CATGACATACAATCCAAATGACTAAGA | 57.887 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3462 | 4150 | 9.685276 | ATGACATACAATCCAAATGACTAAGAA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
3463 | 4151 | 9.685276 | TGACATACAATCCAAATGACTAAGAAT | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
3465 | 4153 | 9.125026 | ACATACAATCCAAATGACTAAGAATCC | 57.875 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3466 | 4154 | 9.123902 | CATACAATCCAAATGACTAAGAATCCA | 57.876 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3467 | 4155 | 9.699410 | ATACAATCCAAATGACTAAGAATCCAA | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
3468 | 4156 | 8.421249 | ACAATCCAAATGACTAAGAATCCAAA | 57.579 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
3469 | 4157 | 8.869109 | ACAATCCAAATGACTAAGAATCCAAAA | 58.131 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3513 | 4201 | 5.048083 | GGATCAAGTGTTATGAAGTTGCCAA | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3514 | 4202 | 6.350445 | GGATCAAGTGTTATGAAGTTGCCAAT | 60.350 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3523 | 4211 | 0.899720 | AAGTTGCCAATGATGCCCAG | 59.100 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3533 | 4221 | 1.758936 | TGATGCCCAGCAAGATCTTG | 58.241 | 50.000 | 27.82 | 27.82 | 43.62 | 3.02 |
3544 | 4232 | 5.841957 | AGCAAGATCTTGTTGAAGTTGTT | 57.158 | 34.783 | 30.88 | 3.31 | 42.31 | 2.83 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 7.123697 | TCCTCCTTTTTCGAGATCATACACTTA | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3 | 4 | 5.422331 | TCCTCCTTTTTCGAGATCATACACT | 59.578 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4 | 5 | 5.520649 | GTCCTCCTTTTTCGAGATCATACAC | 59.479 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5 | 6 | 5.186992 | TGTCCTCCTTTTTCGAGATCATACA | 59.813 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6 | 7 | 5.661458 | TGTCCTCCTTTTTCGAGATCATAC | 58.339 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
7 | 8 | 5.932619 | TGTCCTCCTTTTTCGAGATCATA | 57.067 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
8 | 9 | 4.826274 | TGTCCTCCTTTTTCGAGATCAT | 57.174 | 40.909 | 0.00 | 0.00 | 0.00 | 2.45 |
9 | 10 | 4.617253 | TTGTCCTCCTTTTTCGAGATCA | 57.383 | 40.909 | 0.00 | 0.00 | 0.00 | 2.92 |
10 | 11 | 4.998033 | ACTTTGTCCTCCTTTTTCGAGATC | 59.002 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
11 | 12 | 4.974399 | ACTTTGTCCTCCTTTTTCGAGAT | 58.026 | 39.130 | 0.00 | 0.00 | 0.00 | 2.75 |
12 | 13 | 4.417426 | ACTTTGTCCTCCTTTTTCGAGA | 57.583 | 40.909 | 0.00 | 0.00 | 0.00 | 4.04 |
13 | 14 | 5.390991 | GCATACTTTGTCCTCCTTTTTCGAG | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 4.04 |
14 | 15 | 4.454504 | GCATACTTTGTCCTCCTTTTTCGA | 59.545 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
15 | 16 | 4.379499 | GGCATACTTTGTCCTCCTTTTTCG | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
16 | 17 | 4.522789 | TGGCATACTTTGTCCTCCTTTTTC | 59.477 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
17 | 18 | 4.479158 | TGGCATACTTTGTCCTCCTTTTT | 58.521 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
18 | 19 | 4.112634 | TGGCATACTTTGTCCTCCTTTT | 57.887 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
19 | 20 | 3.806949 | TGGCATACTTTGTCCTCCTTT | 57.193 | 42.857 | 0.00 | 0.00 | 0.00 | 3.11 |
20 | 21 | 5.380043 | CATATGGCATACTTTGTCCTCCTT | 58.620 | 41.667 | 9.83 | 0.00 | 0.00 | 3.36 |
21 | 22 | 4.747931 | GCATATGGCATACTTTGTCCTCCT | 60.748 | 45.833 | 9.83 | 0.00 | 43.97 | 3.69 |
22 | 23 | 3.503748 | GCATATGGCATACTTTGTCCTCC | 59.496 | 47.826 | 9.83 | 0.00 | 43.97 | 4.30 |
23 | 24 | 4.756084 | GCATATGGCATACTTTGTCCTC | 57.244 | 45.455 | 9.83 | 0.00 | 43.97 | 3.71 |
29 | 30 | 7.365028 | TAGCATAGCTAGCATATGGCATACTTT | 60.365 | 37.037 | 23.73 | 0.73 | 42.23 | 2.66 |
30 | 31 | 6.098838 | TAGCATAGCTAGCATATGGCATACTT | 59.901 | 38.462 | 23.73 | 1.09 | 42.23 | 2.24 |
31 | 32 | 5.600069 | TAGCATAGCTAGCATATGGCATACT | 59.400 | 40.000 | 23.73 | 17.46 | 42.23 | 2.12 |
32 | 33 | 5.847304 | TAGCATAGCTAGCATATGGCATAC | 58.153 | 41.667 | 23.73 | 13.51 | 42.23 | 2.39 |
48 | 49 | 8.718102 | TTTTTAGACAAACTAGGCTAGCATAG | 57.282 | 34.615 | 29.67 | 29.67 | 35.57 | 2.23 |
80 | 81 | 8.926374 | TCCTATACTAGTACTAGGCTAGCATAG | 58.074 | 40.741 | 29.67 | 29.67 | 39.88 | 2.23 |
92 | 93 | 9.032624 | TCTGCTTTTGTTTCCTATACTAGTACT | 57.967 | 33.333 | 4.31 | 0.00 | 0.00 | 2.73 |
93 | 94 | 9.085250 | GTCTGCTTTTGTTTCCTATACTAGTAC | 57.915 | 37.037 | 4.31 | 0.00 | 0.00 | 2.73 |
94 | 95 | 9.032624 | AGTCTGCTTTTGTTTCCTATACTAGTA | 57.967 | 33.333 | 4.77 | 4.77 | 0.00 | 1.82 |
95 | 96 | 7.908453 | AGTCTGCTTTTGTTTCCTATACTAGT | 58.092 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
98 | 99 | 9.819267 | GTATAGTCTGCTTTTGTTTCCTATACT | 57.181 | 33.333 | 0.00 | 0.00 | 35.64 | 2.12 |
99 | 100 | 9.595823 | TGTATAGTCTGCTTTTGTTTCCTATAC | 57.404 | 33.333 | 0.00 | 0.00 | 37.52 | 1.47 |
101 | 102 | 9.113838 | CATGTATAGTCTGCTTTTGTTTCCTAT | 57.886 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
117 | 118 | 2.095364 | CGTACGGGGAGCATGTATAGTC | 60.095 | 54.545 | 7.57 | 0.00 | 0.00 | 2.59 |
176 | 181 | 3.976701 | ATTTCAGCGTGCTCCCGGG | 62.977 | 63.158 | 16.85 | 16.85 | 0.00 | 5.73 |
189 | 194 | 4.035558 | GCGATGAATGCTTACAGGATTTCA | 59.964 | 41.667 | 0.00 | 0.00 | 36.36 | 2.69 |
197 | 202 | 2.287644 | CGAATGGCGATGAATGCTTACA | 59.712 | 45.455 | 0.00 | 0.00 | 44.57 | 2.41 |
199 | 204 | 1.264020 | GCGAATGGCGATGAATGCTTA | 59.736 | 47.619 | 0.00 | 0.00 | 44.57 | 3.09 |
221 | 226 | 3.231818 | TCGGAAAGGAGGGAGTATCATC | 58.768 | 50.000 | 0.00 | 0.00 | 36.25 | 2.92 |
230 | 235 | 2.567615 | CCCTATACATCGGAAAGGAGGG | 59.432 | 54.545 | 0.00 | 0.00 | 36.68 | 4.30 |
232 | 237 | 2.900546 | AGCCCTATACATCGGAAAGGAG | 59.099 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
233 | 238 | 2.972348 | AGCCCTATACATCGGAAAGGA | 58.028 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
234 | 239 | 3.771577 | AAGCCCTATACATCGGAAAGG | 57.228 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
235 | 240 | 7.745620 | AAATTAAGCCCTATACATCGGAAAG | 57.254 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
236 | 241 | 9.629878 | TTTAAATTAAGCCCTATACATCGGAAA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 3.13 |
237 | 242 | 9.629878 | TTTTAAATTAAGCCCTATACATCGGAA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 4.30 |
238 | 243 | 9.629878 | TTTTTAAATTAAGCCCTATACATCGGA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 4.55 |
246 | 251 | 9.487442 | TGGTGAGATTTTTAAATTAAGCCCTAT | 57.513 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
247 | 252 | 8.887264 | TGGTGAGATTTTTAAATTAAGCCCTA | 57.113 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
248 | 253 | 7.790782 | TGGTGAGATTTTTAAATTAAGCCCT | 57.209 | 32.000 | 0.00 | 0.00 | 0.00 | 5.19 |
249 | 254 | 7.333423 | GGTTGGTGAGATTTTTAAATTAAGCCC | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 5.19 |
250 | 255 | 7.875554 | TGGTTGGTGAGATTTTTAAATTAAGCC | 59.124 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
251 | 256 | 8.825667 | TGGTTGGTGAGATTTTTAAATTAAGC | 57.174 | 30.769 | 0.00 | 0.00 | 0.00 | 3.09 |
253 | 258 | 9.771534 | CCTTGGTTGGTGAGATTTTTAAATTAA | 57.228 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
254 | 259 | 8.929487 | ACCTTGGTTGGTGAGATTTTTAAATTA | 58.071 | 29.630 | 0.00 | 0.00 | 39.17 | 1.40 |
255 | 260 | 7.801104 | ACCTTGGTTGGTGAGATTTTTAAATT | 58.199 | 30.769 | 0.00 | 0.00 | 39.17 | 1.82 |
256 | 261 | 7.373617 | ACCTTGGTTGGTGAGATTTTTAAAT | 57.626 | 32.000 | 0.00 | 0.00 | 39.17 | 1.40 |
257 | 262 | 6.800072 | ACCTTGGTTGGTGAGATTTTTAAA | 57.200 | 33.333 | 0.00 | 0.00 | 39.17 | 1.52 |
258 | 263 | 9.762381 | ATATACCTTGGTTGGTGAGATTTTTAA | 57.238 | 29.630 | 0.00 | 0.00 | 41.05 | 1.52 |
259 | 264 | 9.184523 | CATATACCTTGGTTGGTGAGATTTTTA | 57.815 | 33.333 | 0.00 | 0.00 | 41.05 | 1.52 |
260 | 265 | 7.893302 | TCATATACCTTGGTTGGTGAGATTTTT | 59.107 | 33.333 | 0.00 | 0.00 | 41.05 | 1.94 |
261 | 266 | 7.410174 | TCATATACCTTGGTTGGTGAGATTTT | 58.590 | 34.615 | 0.00 | 0.00 | 41.05 | 1.82 |
262 | 267 | 6.969043 | TCATATACCTTGGTTGGTGAGATTT | 58.031 | 36.000 | 0.00 | 0.00 | 41.05 | 2.17 |
263 | 268 | 6.575244 | TCATATACCTTGGTTGGTGAGATT | 57.425 | 37.500 | 0.00 | 0.00 | 41.05 | 2.40 |
264 | 269 | 6.329986 | TCATCATATACCTTGGTTGGTGAGAT | 59.670 | 38.462 | 0.00 | 0.00 | 41.05 | 2.75 |
265 | 270 | 5.665360 | TCATCATATACCTTGGTTGGTGAGA | 59.335 | 40.000 | 0.00 | 0.00 | 41.05 | 3.27 |
266 | 271 | 5.928976 | TCATCATATACCTTGGTTGGTGAG | 58.071 | 41.667 | 0.00 | 0.00 | 41.05 | 3.51 |
267 | 272 | 5.428457 | ACTCATCATATACCTTGGTTGGTGA | 59.572 | 40.000 | 0.00 | 1.94 | 41.05 | 4.02 |
268 | 273 | 5.528690 | CACTCATCATATACCTTGGTTGGTG | 59.471 | 44.000 | 0.00 | 0.00 | 41.05 | 4.17 |
269 | 274 | 5.397899 | CCACTCATCATATACCTTGGTTGGT | 60.398 | 44.000 | 0.00 | 0.00 | 43.66 | 3.67 |
270 | 275 | 5.065914 | CCACTCATCATATACCTTGGTTGG | 58.934 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
271 | 276 | 5.528690 | CACCACTCATCATATACCTTGGTTG | 59.471 | 44.000 | 0.00 | 0.00 | 33.77 | 3.77 |
272 | 277 | 5.397899 | CCACCACTCATCATATACCTTGGTT | 60.398 | 44.000 | 0.00 | 0.00 | 33.77 | 3.67 |
273 | 278 | 4.103153 | CCACCACTCATCATATACCTTGGT | 59.897 | 45.833 | 0.00 | 0.00 | 36.53 | 3.67 |
274 | 279 | 4.347876 | TCCACCACTCATCATATACCTTGG | 59.652 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
275 | 280 | 5.551305 | TCCACCACTCATCATATACCTTG | 57.449 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
276 | 281 | 6.770286 | ATTCCACCACTCATCATATACCTT | 57.230 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
277 | 282 | 8.454859 | AATATTCCACCACTCATCATATACCT | 57.545 | 34.615 | 0.00 | 0.00 | 0.00 | 3.08 |
278 | 283 | 9.520515 | AAAATATTCCACCACTCATCATATACC | 57.479 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
314 | 319 | 6.035327 | CAAGAGCATTAATTAGGTGCTTTTGC | 59.965 | 38.462 | 26.63 | 16.56 | 46.67 | 3.68 |
320 | 325 | 7.814587 | AGAAAAACAAGAGCATTAATTAGGTGC | 59.185 | 33.333 | 13.92 | 13.92 | 39.10 | 5.01 |
321 | 326 | 9.346725 | GAGAAAAACAAGAGCATTAATTAGGTG | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
322 | 327 | 9.077885 | TGAGAAAAACAAGAGCATTAATTAGGT | 57.922 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
323 | 328 | 9.912634 | TTGAGAAAAACAAGAGCATTAATTAGG | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
391 | 396 | 7.940178 | AATCATTGCATGCATGTACTTTATG | 57.060 | 32.000 | 26.79 | 20.99 | 0.00 | 1.90 |
394 | 399 | 8.822855 | CATTAAATCATTGCATGCATGTACTTT | 58.177 | 29.630 | 26.79 | 18.20 | 0.00 | 2.66 |
395 | 400 | 7.042321 | GCATTAAATCATTGCATGCATGTACTT | 60.042 | 33.333 | 26.79 | 14.54 | 36.91 | 2.24 |
396 | 401 | 6.422701 | GCATTAAATCATTGCATGCATGTACT | 59.577 | 34.615 | 26.79 | 14.90 | 36.91 | 2.73 |
397 | 402 | 6.201234 | TGCATTAAATCATTGCATGCATGTAC | 59.799 | 34.615 | 26.79 | 12.52 | 41.18 | 2.90 |
398 | 403 | 6.201234 | GTGCATTAAATCATTGCATGCATGTA | 59.799 | 34.615 | 26.79 | 20.88 | 46.90 | 2.29 |
399 | 404 | 5.007234 | GTGCATTAAATCATTGCATGCATGT | 59.993 | 36.000 | 26.79 | 10.91 | 46.90 | 3.21 |
400 | 405 | 5.439828 | GTGCATTAAATCATTGCATGCATG | 58.560 | 37.500 | 23.37 | 22.70 | 46.90 | 4.06 |
401 | 406 | 4.513692 | GGTGCATTAAATCATTGCATGCAT | 59.486 | 37.500 | 23.37 | 7.94 | 46.90 | 3.96 |
402 | 407 | 3.872182 | GGTGCATTAAATCATTGCATGCA | 59.128 | 39.130 | 18.46 | 18.46 | 46.90 | 3.96 |
403 | 408 | 4.124238 | AGGTGCATTAAATCATTGCATGC | 58.876 | 39.130 | 11.82 | 11.82 | 46.90 | 4.06 |
404 | 409 | 5.813157 | TCAAGGTGCATTAAATCATTGCATG | 59.187 | 36.000 | 4.14 | 0.11 | 46.90 | 4.06 |
405 | 410 | 5.979993 | TCAAGGTGCATTAAATCATTGCAT | 58.020 | 33.333 | 4.14 | 0.00 | 46.90 | 3.96 |
406 | 411 | 5.402997 | TCAAGGTGCATTAAATCATTGCA | 57.597 | 34.783 | 0.00 | 0.00 | 43.63 | 4.08 |
407 | 412 | 6.724694 | TTTCAAGGTGCATTAAATCATTGC | 57.275 | 33.333 | 0.00 | 0.00 | 36.91 | 3.56 |
408 | 413 | 8.600625 | CAGATTTCAAGGTGCATTAAATCATTG | 58.399 | 33.333 | 17.06 | 7.51 | 38.45 | 2.82 |
409 | 414 | 8.533657 | TCAGATTTCAAGGTGCATTAAATCATT | 58.466 | 29.630 | 17.06 | 0.00 | 38.45 | 2.57 |
410 | 415 | 8.070034 | TCAGATTTCAAGGTGCATTAAATCAT | 57.930 | 30.769 | 17.06 | 6.62 | 38.45 | 2.45 |
411 | 416 | 7.465353 | TCAGATTTCAAGGTGCATTAAATCA | 57.535 | 32.000 | 17.06 | 3.49 | 38.45 | 2.57 |
412 | 417 | 7.814107 | TGTTCAGATTTCAAGGTGCATTAAATC | 59.186 | 33.333 | 0.00 | 2.14 | 37.00 | 2.17 |
413 | 418 | 7.669427 | TGTTCAGATTTCAAGGTGCATTAAAT | 58.331 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
414 | 419 | 7.048629 | TGTTCAGATTTCAAGGTGCATTAAA | 57.951 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
415 | 420 | 6.647334 | TGTTCAGATTTCAAGGTGCATTAA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
416 | 421 | 6.209192 | ACATGTTCAGATTTCAAGGTGCATTA | 59.791 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
417 | 422 | 5.011329 | ACATGTTCAGATTTCAAGGTGCATT | 59.989 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
418 | 423 | 4.525487 | ACATGTTCAGATTTCAAGGTGCAT | 59.475 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
419 | 424 | 3.890756 | ACATGTTCAGATTTCAAGGTGCA | 59.109 | 39.130 | 0.00 | 0.00 | 0.00 | 4.57 |
420 | 425 | 4.022935 | TCACATGTTCAGATTTCAAGGTGC | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
421 | 426 | 5.694231 | TCACATGTTCAGATTTCAAGGTG | 57.306 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
422 | 427 | 8.408043 | TTTATCACATGTTCAGATTTCAAGGT | 57.592 | 30.769 | 0.00 | 0.00 | 0.00 | 3.50 |
423 | 428 | 8.733458 | TCTTTATCACATGTTCAGATTTCAAGG | 58.267 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
425 | 430 | 9.897744 | GTTCTTTATCACATGTTCAGATTTCAA | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
426 | 431 | 9.065798 | TGTTCTTTATCACATGTTCAGATTTCA | 57.934 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
427 | 432 | 9.897744 | TTGTTCTTTATCACATGTTCAGATTTC | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
428 | 433 | 9.683069 | GTTGTTCTTTATCACATGTTCAGATTT | 57.317 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
429 | 434 | 8.299570 | GGTTGTTCTTTATCACATGTTCAGATT | 58.700 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
430 | 435 | 7.448161 | TGGTTGTTCTTTATCACATGTTCAGAT | 59.552 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
431 | 436 | 6.770303 | TGGTTGTTCTTTATCACATGTTCAGA | 59.230 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
432 | 437 | 6.969366 | TGGTTGTTCTTTATCACATGTTCAG | 58.031 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
433 | 438 | 6.951062 | TGGTTGTTCTTTATCACATGTTCA | 57.049 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
434 | 439 | 8.816640 | ATTTGGTTGTTCTTTATCACATGTTC | 57.183 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
438 | 443 | 9.423061 | GCTTAATTTGGTTGTTCTTTATCACAT | 57.577 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
439 | 444 | 7.870445 | GGCTTAATTTGGTTGTTCTTTATCACA | 59.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
440 | 445 | 8.088365 | AGGCTTAATTTGGTTGTTCTTTATCAC | 58.912 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
441 | 446 | 8.189119 | AGGCTTAATTTGGTTGTTCTTTATCA | 57.811 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
450 | 455 | 9.665719 | CCATTTTATAAGGCTTAATTTGGTTGT | 57.334 | 29.630 | 11.59 | 0.00 | 0.00 | 3.32 |
451 | 456 | 9.883142 | TCCATTTTATAAGGCTTAATTTGGTTG | 57.117 | 29.630 | 11.59 | 4.00 | 0.00 | 3.77 |
486 | 491 | 9.856162 | TCGGTTTATAGGGCTTATCTTAAAATT | 57.144 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
487 | 492 | 9.856162 | TTCGGTTTATAGGGCTTATCTTAAAAT | 57.144 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
488 | 493 | 9.683870 | TTTCGGTTTATAGGGCTTATCTTAAAA | 57.316 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
489 | 494 | 9.683870 | TTTTCGGTTTATAGGGCTTATCTTAAA | 57.316 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
490 | 495 | 9.333724 | CTTTTCGGTTTATAGGGCTTATCTTAA | 57.666 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
491 | 496 | 7.935210 | CCTTTTCGGTTTATAGGGCTTATCTTA | 59.065 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
492 | 497 | 6.771267 | CCTTTTCGGTTTATAGGGCTTATCTT | 59.229 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
493 | 498 | 6.100714 | TCCTTTTCGGTTTATAGGGCTTATCT | 59.899 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
494 | 499 | 6.293698 | TCCTTTTCGGTTTATAGGGCTTATC | 58.706 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
495 | 500 | 6.256643 | TCCTTTTCGGTTTATAGGGCTTAT | 57.743 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
496 | 501 | 5.397109 | CCTCCTTTTCGGTTTATAGGGCTTA | 60.397 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
497 | 502 | 4.524053 | CTCCTTTTCGGTTTATAGGGCTT | 58.476 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
498 | 503 | 3.118000 | CCTCCTTTTCGGTTTATAGGGCT | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
499 | 504 | 3.211865 | CCTCCTTTTCGGTTTATAGGGC | 58.788 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
500 | 505 | 3.457012 | TCCCTCCTTTTCGGTTTATAGGG | 59.543 | 47.826 | 0.00 | 0.00 | 41.33 | 3.53 |
501 | 506 | 4.163649 | ACTCCCTCCTTTTCGGTTTATAGG | 59.836 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
502 | 507 | 5.354842 | ACTCCCTCCTTTTCGGTTTATAG | 57.645 | 43.478 | 0.00 | 0.00 | 0.00 | 1.31 |
503 | 508 | 7.441903 | AATACTCCCTCCTTTTCGGTTTATA | 57.558 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
504 | 509 | 5.970501 | ATACTCCCTCCTTTTCGGTTTAT | 57.029 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
505 | 510 | 5.767277 | AATACTCCCTCCTTTTCGGTTTA | 57.233 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
506 | 511 | 4.652679 | AATACTCCCTCCTTTTCGGTTT | 57.347 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
507 | 512 | 4.042435 | TGAAATACTCCCTCCTTTTCGGTT | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
508 | 513 | 3.585732 | TGAAATACTCCCTCCTTTTCGGT | 59.414 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
509 | 514 | 3.939592 | GTGAAATACTCCCTCCTTTTCGG | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
510 | 515 | 3.617263 | CGTGAAATACTCCCTCCTTTTCG | 59.383 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
511 | 516 | 3.939592 | CCGTGAAATACTCCCTCCTTTTC | 59.060 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
512 | 517 | 3.308188 | CCCGTGAAATACTCCCTCCTTTT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.27 |
513 | 518 | 2.238898 | CCCGTGAAATACTCCCTCCTTT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
514 | 519 | 1.838077 | CCCGTGAAATACTCCCTCCTT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
515 | 520 | 1.273666 | ACCCGTGAAATACTCCCTCCT | 60.274 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
516 | 521 | 1.134491 | CACCCGTGAAATACTCCCTCC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
517 | 522 | 1.134491 | CCACCCGTGAAATACTCCCTC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
518 | 523 | 0.909623 | CCACCCGTGAAATACTCCCT | 59.090 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
519 | 524 | 0.107361 | CCCACCCGTGAAATACTCCC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
520 | 525 | 0.107361 | CCCCACCCGTGAAATACTCC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
521 | 526 | 0.906775 | TCCCCACCCGTGAAATACTC | 59.093 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
591 | 596 | 1.528129 | CTCTGACTTTGGAGGCCAAC | 58.472 | 55.000 | 5.01 | 0.00 | 43.82 | 3.77 |
611 | 617 | 1.677052 | GGGTAGAGGAGATCGTGTGAC | 59.323 | 57.143 | 0.00 | 0.00 | 0.00 | 3.67 |
633 | 639 | 2.881074 | AGTAGTATTGCTGTCGCTGTG | 58.119 | 47.619 | 0.00 | 0.00 | 36.97 | 3.66 |
681 | 698 | 1.529865 | GTTCGCGAGCTGGTAGTTTTT | 59.470 | 47.619 | 16.26 | 0.00 | 0.00 | 1.94 |
731 | 762 | 3.755628 | GTGTGGAGGGCTCGCGTA | 61.756 | 66.667 | 5.77 | 0.00 | 0.00 | 4.42 |
772 | 811 | 1.555477 | GGTGGTGATGGAACCGGGTA | 61.555 | 60.000 | 6.32 | 0.00 | 43.73 | 3.69 |
777 | 816 | 0.965363 | ATTGCGGTGGTGATGGAACC | 60.965 | 55.000 | 0.00 | 0.00 | 40.94 | 3.62 |
782 | 821 | 4.096231 | TGAATAAAGATTGCGGTGGTGATG | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
935 | 974 | 3.207778 | GTGTAGTGTTGGCAACTTGGTA | 58.792 | 45.455 | 28.71 | 13.13 | 37.61 | 3.25 |
957 | 996 | 3.130160 | GCTGCTGCTGCTACACCC | 61.130 | 66.667 | 22.10 | 0.00 | 40.48 | 4.61 |
978 | 1017 | 2.227036 | ACCAGCCAGCTACCTTGCT | 61.227 | 57.895 | 0.00 | 0.00 | 45.18 | 3.91 |
979 | 1018 | 2.042831 | CACCAGCCAGCTACCTTGC | 61.043 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
980 | 1019 | 0.392193 | CTCACCAGCCAGCTACCTTG | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
981 | 1020 | 0.545309 | TCTCACCAGCCAGCTACCTT | 60.545 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
982 | 1021 | 0.326048 | ATCTCACCAGCCAGCTACCT | 60.326 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
983 | 1022 | 0.179062 | CATCTCACCAGCCAGCTACC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
984 | 1023 | 0.179062 | CCATCTCACCAGCCAGCTAC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
990 | 1029 | 2.750657 | CCCCTCCATCTCACCAGCC | 61.751 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
1045 | 1084 | 1.004745 | GATCCTGAACTTGCCCTTGGA | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1392 | 1469 | 3.891586 | GAGCAGGAACGACGACGCA | 62.892 | 63.158 | 7.30 | 0.00 | 43.96 | 5.24 |
2617 | 2694 | 2.732016 | GGAACACGGCCAAAACCC | 59.268 | 61.111 | 2.24 | 0.00 | 0.00 | 4.11 |
2687 | 2781 | 4.083581 | TCCAAACGTACGTACTAGAAGC | 57.916 | 45.455 | 23.12 | 0.00 | 0.00 | 3.86 |
2688 | 2782 | 6.034256 | CCAAATCCAAACGTACGTACTAGAAG | 59.966 | 42.308 | 23.12 | 9.75 | 0.00 | 2.85 |
2689 | 2783 | 5.863397 | CCAAATCCAAACGTACGTACTAGAA | 59.137 | 40.000 | 23.12 | 5.98 | 0.00 | 2.10 |
2702 | 2796 | 1.792367 | GCGAGCAAACCAAATCCAAAC | 59.208 | 47.619 | 0.00 | 0.00 | 0.00 | 2.93 |
2708 | 2802 | 2.514803 | AGGTAAGCGAGCAAACCAAAT | 58.485 | 42.857 | 17.22 | 0.00 | 34.29 | 2.32 |
2726 | 2821 | 2.614057 | GCAACATCCGGAGTATCAAAGG | 59.386 | 50.000 | 11.34 | 0.00 | 36.25 | 3.11 |
2727 | 2822 | 3.310774 | CAGCAACATCCGGAGTATCAAAG | 59.689 | 47.826 | 11.34 | 0.00 | 36.25 | 2.77 |
2729 | 2824 | 2.236146 | ACAGCAACATCCGGAGTATCAA | 59.764 | 45.455 | 11.34 | 0.00 | 36.25 | 2.57 |
2735 | 2830 | 3.270027 | TCATAAACAGCAACATCCGGAG | 58.730 | 45.455 | 11.34 | 4.72 | 0.00 | 4.63 |
2740 | 2835 | 5.841957 | AAGGGATCATAAACAGCAACATC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2780 | 2876 | 7.233689 | TCGATATTTCACGTCTCACAAAAATG | 58.766 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
2781 | 2877 | 7.359262 | TCGATATTTCACGTCTCACAAAAAT | 57.641 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2785 | 2887 | 5.407502 | ACATCGATATTTCACGTCTCACAA | 58.592 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
2788 | 2890 | 6.961359 | AAAACATCGATATTTCACGTCTCA | 57.039 | 33.333 | 1.46 | 0.00 | 0.00 | 3.27 |
2810 | 2912 | 2.028130 | ACATTGCCGTTTGACTCCAAA | 58.972 | 42.857 | 0.00 | 0.00 | 39.74 | 3.28 |
2904 | 3006 | 3.366476 | GCTGTAGACGTGACATGAGAACT | 60.366 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
2911 | 3013 | 2.421775 | CTCTCTGCTGTAGACGTGACAT | 59.578 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2925 | 3027 | 6.294508 | GGATCAAGTAAGATAGGTCTCTCTGC | 60.295 | 46.154 | 0.00 | 0.00 | 32.15 | 4.26 |
2949 | 3051 | 3.144506 | AGAACAGTGCATGAGAACTTGG | 58.855 | 45.455 | 0.00 | 0.00 | 28.17 | 3.61 |
2951 | 3053 | 4.077300 | TGAGAACAGTGCATGAGAACTT | 57.923 | 40.909 | 0.00 | 0.00 | 28.17 | 2.66 |
2953 | 3055 | 3.750130 | ACATGAGAACAGTGCATGAGAAC | 59.250 | 43.478 | 13.40 | 0.00 | 41.35 | 3.01 |
2955 | 3057 | 3.007182 | TGACATGAGAACAGTGCATGAGA | 59.993 | 43.478 | 13.40 | 0.03 | 41.35 | 3.27 |
2956 | 3058 | 3.124806 | GTGACATGAGAACAGTGCATGAG | 59.875 | 47.826 | 13.40 | 0.00 | 41.35 | 2.90 |
2957 | 3059 | 3.069289 | GTGACATGAGAACAGTGCATGA | 58.931 | 45.455 | 13.40 | 0.00 | 41.35 | 3.07 |
2958 | 3060 | 2.159747 | CGTGACATGAGAACAGTGCATG | 60.160 | 50.000 | 0.00 | 0.00 | 43.70 | 4.06 |
2959 | 3061 | 2.071540 | CGTGACATGAGAACAGTGCAT | 58.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
2960 | 3062 | 1.202521 | ACGTGACATGAGAACAGTGCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
2961 | 3063 | 1.457303 | GACGTGACATGAGAACAGTGC | 59.543 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2962 | 3064 | 2.983136 | GAGACGTGACATGAGAACAGTG | 59.017 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2963 | 3065 | 2.623416 | TGAGACGTGACATGAGAACAGT | 59.377 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
2966 | 3068 | 6.019479 | GGAATTATGAGACGTGACATGAGAAC | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
2967 | 3069 | 6.042777 | GGAATTATGAGACGTGACATGAGAA | 58.957 | 40.000 | 0.00 | 2.44 | 0.00 | 2.87 |
2968 | 3070 | 5.360999 | AGGAATTATGAGACGTGACATGAGA | 59.639 | 40.000 | 0.00 | 2.22 | 0.00 | 3.27 |
2969 | 3071 | 5.595885 | AGGAATTATGAGACGTGACATGAG | 58.404 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2970 | 3072 | 5.360999 | AGAGGAATTATGAGACGTGACATGA | 59.639 | 40.000 | 0.00 | 6.45 | 0.00 | 3.07 |
2971 | 3073 | 5.595885 | AGAGGAATTATGAGACGTGACATG | 58.404 | 41.667 | 12.42 | 0.00 | 0.00 | 3.21 |
2973 | 3075 | 5.661056 | AAGAGGAATTATGAGACGTGACA | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
2975 | 3077 | 6.778069 | AGGATAAGAGGAATTATGAGACGTGA | 59.222 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
2976 | 3078 | 6.987386 | AGGATAAGAGGAATTATGAGACGTG | 58.013 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2978 | 3080 | 6.623986 | CGGAGGATAAGAGGAATTATGAGACG | 60.624 | 46.154 | 0.00 | 0.00 | 0.00 | 4.18 |
2979 | 3081 | 6.209788 | ACGGAGGATAAGAGGAATTATGAGAC | 59.790 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
2980 | 3082 | 6.315714 | ACGGAGGATAAGAGGAATTATGAGA | 58.684 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3055 | 3208 | 2.520458 | CACCCTCCCTGGCAAACA | 59.480 | 61.111 | 0.00 | 0.00 | 0.00 | 2.83 |
3091 | 3244 | 2.270205 | CTCGCCACTTCCTGCCAT | 59.730 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
3124 | 3278 | 3.828875 | AACAAAAATGGCCTTTTCGGA | 57.171 | 38.095 | 16.33 | 0.00 | 36.01 | 4.55 |
3129 | 3283 | 8.518430 | ACAATTTCTAAACAAAAATGGCCTTT | 57.482 | 26.923 | 3.32 | 0.00 | 0.00 | 3.11 |
3135 | 3289 | 8.702438 | AGCGATGACAATTTCTAAACAAAAATG | 58.298 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3136 | 3290 | 8.816640 | AGCGATGACAATTTCTAAACAAAAAT | 57.183 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
3147 | 3301 | 5.741040 | GGAAAGATCAAGCGATGACAATTTC | 59.259 | 40.000 | 0.00 | 14.06 | 41.93 | 2.17 |
3160 | 3314 | 5.312079 | ACAGTTTGAGGAGGAAAGATCAAG | 58.688 | 41.667 | 0.00 | 0.00 | 33.53 | 3.02 |
3198 | 3759 | 4.284550 | GGAGTGGGGTGGCAAGCA | 62.285 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
3206 | 3767 | 2.516888 | CGTCAGTTGGGAGTGGGGT | 61.517 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
3211 | 3772 | 1.300697 | GCGAACGTCAGTTGGGAGT | 60.301 | 57.895 | 0.00 | 0.00 | 41.34 | 3.85 |
3218 | 3783 | 0.606604 | ATTACCCAGCGAACGTCAGT | 59.393 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3219 | 3784 | 2.572191 | TATTACCCAGCGAACGTCAG | 57.428 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3230 | 3795 | 9.327731 | AGGTTTAATTTTTGGTGATATTACCCA | 57.672 | 29.630 | 13.76 | 0.03 | 40.09 | 4.51 |
3307 | 3995 | 7.459795 | TGTATGCAAACATTTGGATGAGTTA | 57.540 | 32.000 | 18.37 | 0.00 | 46.54 | 2.24 |
3316 | 4004 | 8.765044 | AAACGAATTTTGTATGCAAACATTTG | 57.235 | 26.923 | 8.60 | 15.34 | 43.47 | 2.32 |
3321 | 4009 | 9.856803 | ATGTTTAAACGAATTTTGTATGCAAAC | 57.143 | 25.926 | 8.60 | 0.00 | 43.47 | 2.93 |
3381 | 4069 | 9.891828 | TGTATTTGAATTGTGTGTACTTGAATC | 57.108 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
3477 | 4165 | 9.722056 | CATAACACTTGATCCTTATGCTTTTAC | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3513 | 4201 | 2.307768 | CAAGATCTTGCTGGGCATCAT | 58.692 | 47.619 | 21.96 | 0.00 | 38.76 | 2.45 |
3514 | 4202 | 1.005097 | ACAAGATCTTGCTGGGCATCA | 59.995 | 47.619 | 30.95 | 0.00 | 44.03 | 3.07 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.