Multiple sequence alignment - TraesCS3D01G254600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G254600 chr3D 100.000 4500 0 0 1 4500 355989715 355994214 0.000000e+00 8311.0
1 TraesCS3D01G254600 chr3D 85.646 209 21 6 3 209 511663937 511663736 1.270000e-50 211.0
2 TraesCS3D01G254600 chr3D 95.536 112 5 0 436 547 175663741 175663852 3.580000e-41 180.0
3 TraesCS3D01G254600 chr3A 96.583 2605 62 11 426 3011 474973477 474976073 0.000000e+00 4292.0
4 TraesCS3D01G254600 chr3A 88.103 891 51 12 3624 4500 474976649 474977498 0.000000e+00 1007.0
5 TraesCS3D01G254600 chr3A 93.144 423 21 3 3125 3546 474976195 474976610 8.270000e-172 614.0
6 TraesCS3D01G254600 chr3A 98.693 153 2 0 207 359 474972917 474973069 5.740000e-69 272.0
7 TraesCS3D01G254600 chr3A 85.714 210 23 4 3 211 646608380 646608177 9.800000e-52 215.0
8 TraesCS3D01G254600 chr3A 90.000 60 2 2 3041 3097 474976077 474976135 1.740000e-09 75.0
9 TraesCS3D01G254600 chr3B 95.618 1757 47 16 540 2271 457200120 457201871 0.000000e+00 2791.0
10 TraesCS3D01G254600 chr3B 97.429 700 18 0 2297 2996 457201933 457202632 0.000000e+00 1194.0
11 TraesCS3D01G254600 chr3B 89.863 878 53 17 3624 4500 457203262 457204104 0.000000e+00 1096.0
12 TraesCS3D01G254600 chr3B 91.584 404 29 2 3156 3554 457202829 457203232 1.830000e-153 553.0
13 TraesCS3D01G254600 chr3B 93.333 120 7 1 207 326 457199301 457199419 4.630000e-40 176.0
14 TraesCS3D01G254600 chr3B 84.615 117 7 5 3022 3129 457202626 457202740 6.160000e-19 106.0
15 TraesCS3D01G254600 chr5D 85.577 208 23 4 1 208 491613676 491613876 1.270000e-50 211.0
16 TraesCS3D01G254600 chr5D 96.364 110 4 0 436 545 375170808 375170917 9.940000e-42 182.0
17 TraesCS3D01G254600 chr5D 90.741 54 5 0 212 265 417617716 417617769 6.240000e-09 73.1
18 TraesCS3D01G254600 chr5D 80.000 75 15 0 1655 1729 363177945 363178019 6.290000e-04 56.5
19 TraesCS3D01G254600 chr5D 80.000 75 15 0 1655 1729 363340189 363340263 6.290000e-04 56.5
20 TraesCS3D01G254600 chr5D 80.000 75 15 0 1655 1729 363976225 363976299 6.290000e-04 56.5
21 TraesCS3D01G254600 chr2D 84.286 210 24 5 3 210 646621628 646621426 3.550000e-46 196.0
22 TraesCS3D01G254600 chr7A 84.135 208 23 6 3 206 713327611 713327812 4.590000e-45 193.0
23 TraesCS3D01G254600 chr7A 84.135 208 23 6 3 206 713399039 713399240 4.590000e-45 193.0
24 TraesCS3D01G254600 chr7A 84.135 208 22 7 3 206 713607451 713607651 1.650000e-44 191.0
25 TraesCS3D01G254600 chr6A 96.330 109 4 0 436 544 87481250 87481142 3.580000e-41 180.0
26 TraesCS3D01G254600 chr2A 93.333 120 8 0 436 555 459017194 459017313 1.290000e-40 178.0
27 TraesCS3D01G254600 chr2A 94.690 113 6 0 436 548 564044900 564045012 4.630000e-40 176.0
28 TraesCS3D01G254600 chr6D 94.690 113 6 0 436 548 69292755 69292643 4.630000e-40 176.0
29 TraesCS3D01G254600 chr6B 94.690 113 6 0 436 548 513685270 513685158 4.630000e-40 176.0
30 TraesCS3D01G254600 chr1A 91.339 127 9 2 440 566 47216265 47216141 5.980000e-39 172.0
31 TraesCS3D01G254600 chr1D 87.755 147 15 2 211 356 493949953 493949809 7.740000e-38 169.0
32 TraesCS3D01G254600 chr1B 87.629 97 8 3 130 223 626810230 626810325 4.760000e-20 110.0
33 TraesCS3D01G254600 chr7B 79.592 147 18 11 72 208 668937149 668937293 1.330000e-15 95.3
34 TraesCS3D01G254600 chr5B 80.000 75 15 0 1655 1729 429727581 429727655 6.290000e-04 56.5
35 TraesCS3D01G254600 chr5B 80.000 75 15 0 1655 1729 429820607 429820681 6.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G254600 chr3D 355989715 355994214 4499 False 8311 8311 100.000000 1 4500 1 chr3D.!!$F2 4499
1 TraesCS3D01G254600 chr3A 474972917 474977498 4581 False 1252 4292 93.304600 207 4500 5 chr3A.!!$F1 4293
2 TraesCS3D01G254600 chr3B 457199301 457204104 4803 False 986 2791 92.073667 207 4500 6 chr3B.!!$F1 4293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.030092 AGCCCTATGAAGCCCACCTA 60.030 55.0 0.0 0.0 0.00 3.08 F
490 1081 0.034059 CGAGCACCAGGACTTGAACT 59.966 55.0 0.0 0.0 0.00 3.01 F
1215 1821 0.247736 ACCTTCTGCACGAGATCACC 59.752 55.0 0.0 0.0 0.00 4.02 F
1531 2137 0.317479 GCTCGGGCTCACGGTAATAT 59.683 55.0 0.0 0.0 35.22 1.28 F
2963 3627 1.454201 TCGTCGTCTTCATCAGCTCT 58.546 50.0 0.0 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1134 1740 0.311790 TCTTGACCACCGTGTACGTC 59.688 55.0 0.00 0.00 37.74 4.34 R
2390 3054 0.031043 CCTCGTTCACCGTGTACACA 59.969 55.0 24.98 3.12 37.94 3.72 R
3043 3707 0.459899 GCCCGGACCAATCCATTTTC 59.540 55.0 0.73 0.00 46.67 2.29 R
3044 3708 0.975556 GGCCCGGACCAATCCATTTT 60.976 55.0 0.73 0.00 46.67 1.82 R
4164 4951 0.314302 ACACGCAGAGACTTTACGCT 59.686 50.0 0.00 0.00 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.705638 CGCGTGTGGAGTGTGCAG 61.706 66.667 0.00 0.00 0.00 4.41
19 20 4.017877 GCGTGTGGAGTGTGCAGC 62.018 66.667 0.00 0.00 0.00 5.25
20 21 2.280389 CGTGTGGAGTGTGCAGCT 60.280 61.111 0.00 0.00 0.00 4.24
21 22 1.889105 CGTGTGGAGTGTGCAGCTT 60.889 57.895 0.00 0.00 0.00 3.74
22 23 1.650912 GTGTGGAGTGTGCAGCTTG 59.349 57.895 0.00 0.00 0.00 4.01
23 24 2.188829 TGTGGAGTGTGCAGCTTGC 61.189 57.895 0.00 1.70 45.29 4.01
41 42 4.106925 GTGGAGCCTGGAGCCCTG 62.107 72.222 0.00 0.00 45.47 4.45
44 45 2.771762 GAGCCTGGAGCCCTGGAT 60.772 66.667 17.59 12.85 43.75 3.41
45 46 3.095163 AGCCTGGAGCCCTGGATG 61.095 66.667 17.59 0.00 44.09 3.51
46 47 3.415087 GCCTGGAGCCCTGGATGT 61.415 66.667 17.59 0.00 44.09 3.06
47 48 2.593978 CCTGGAGCCCTGGATGTG 59.406 66.667 10.45 0.00 44.09 3.21
48 49 2.304056 CCTGGAGCCCTGGATGTGT 61.304 63.158 10.45 0.00 44.09 3.72
49 50 1.077930 CTGGAGCCCTGGATGTGTG 60.078 63.158 0.00 0.00 0.00 3.82
50 51 2.439156 GGAGCCCTGGATGTGTGC 60.439 66.667 0.00 0.00 0.00 4.57
51 52 2.673523 GAGCCCTGGATGTGTGCT 59.326 61.111 0.00 0.00 34.40 4.40
52 53 1.001641 GAGCCCTGGATGTGTGCTT 60.002 57.895 0.00 0.00 31.23 3.91
53 54 1.001641 AGCCCTGGATGTGTGCTTC 60.002 57.895 0.00 0.00 0.00 3.86
54 55 2.401766 GCCCTGGATGTGTGCTTCG 61.402 63.158 0.00 0.00 0.00 3.79
55 56 1.003355 CCCTGGATGTGTGCTTCGT 60.003 57.895 0.00 0.00 0.00 3.85
56 57 0.606401 CCCTGGATGTGTGCTTCGTT 60.606 55.000 0.00 0.00 0.00 3.85
57 58 0.518636 CCTGGATGTGTGCTTCGTTG 59.481 55.000 0.00 0.00 0.00 4.10
58 59 0.110056 CTGGATGTGTGCTTCGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
59 60 0.534877 TGGATGTGTGCTTCGTTGCT 60.535 50.000 4.36 0.00 0.00 3.91
60 61 0.166814 GGATGTGTGCTTCGTTGCTC 59.833 55.000 4.36 1.80 0.00 4.26
61 62 1.151668 GATGTGTGCTTCGTTGCTCT 58.848 50.000 4.36 0.00 0.00 4.09
62 63 2.337583 GATGTGTGCTTCGTTGCTCTA 58.662 47.619 4.36 0.00 0.00 2.43
63 64 1.783284 TGTGTGCTTCGTTGCTCTAG 58.217 50.000 4.36 0.00 0.00 2.43
64 65 1.068588 TGTGTGCTTCGTTGCTCTAGT 59.931 47.619 4.36 0.00 0.00 2.57
65 66 1.457303 GTGTGCTTCGTTGCTCTAGTG 59.543 52.381 4.36 0.00 0.00 2.74
66 67 1.068588 TGTGCTTCGTTGCTCTAGTGT 59.931 47.619 4.36 0.00 0.00 3.55
67 68 1.457303 GTGCTTCGTTGCTCTAGTGTG 59.543 52.381 4.36 0.00 0.00 3.82
68 69 1.071605 GCTTCGTTGCTCTAGTGTGG 58.928 55.000 0.00 0.00 0.00 4.17
69 70 1.071605 CTTCGTTGCTCTAGTGTGGC 58.928 55.000 0.00 0.00 0.00 5.01
70 71 0.320421 TTCGTTGCTCTAGTGTGGCC 60.320 55.000 0.00 0.00 0.00 5.36
71 72 2.094659 CGTTGCTCTAGTGTGGCCG 61.095 63.158 0.00 0.00 0.00 6.13
72 73 1.004918 GTTGCTCTAGTGTGGCCGT 60.005 57.895 0.00 0.00 0.00 5.68
73 74 1.005037 TTGCTCTAGTGTGGCCGTG 60.005 57.895 0.00 0.00 0.00 4.94
74 75 1.754380 TTGCTCTAGTGTGGCCGTGT 61.754 55.000 0.00 0.00 0.00 4.49
75 76 1.738099 GCTCTAGTGTGGCCGTGTG 60.738 63.158 0.00 0.00 0.00 3.82
76 77 1.079819 CTCTAGTGTGGCCGTGTGG 60.080 63.158 0.00 0.00 38.77 4.17
77 78 2.047274 CTAGTGTGGCCGTGTGGG 60.047 66.667 0.00 0.00 39.58 4.61
87 88 4.694233 CGTGTGGGCTGCTCTGCT 62.694 66.667 0.00 0.00 0.00 4.24
88 89 3.054503 GTGTGGGCTGCTCTGCTG 61.055 66.667 0.00 0.00 0.00 4.41
89 90 3.563224 TGTGGGCTGCTCTGCTGT 61.563 61.111 0.00 0.00 0.00 4.40
90 91 2.282040 GTGGGCTGCTCTGCTGTT 60.282 61.111 0.00 0.00 0.00 3.16
91 92 2.281970 TGGGCTGCTCTGCTGTTG 60.282 61.111 0.00 0.00 0.00 3.33
92 93 3.745803 GGGCTGCTCTGCTGTTGC 61.746 66.667 0.00 4.92 40.20 4.17
93 94 3.745803 GGCTGCTCTGCTGTTGCC 61.746 66.667 0.00 0.00 38.71 4.52
94 95 2.672307 GCTGCTCTGCTGTTGCCT 60.672 61.111 0.00 0.00 38.71 4.75
95 96 2.979197 GCTGCTCTGCTGTTGCCTG 61.979 63.158 0.00 4.19 38.71 4.85
96 97 1.600076 CTGCTCTGCTGTTGCCTGT 60.600 57.895 8.27 0.00 38.71 4.00
97 98 1.152902 TGCTCTGCTGTTGCCTGTT 60.153 52.632 8.27 0.00 38.71 3.16
98 99 1.285023 GCTCTGCTGTTGCCTGTTG 59.715 57.895 0.00 0.00 38.71 3.33
99 100 1.285023 CTCTGCTGTTGCCTGTTGC 59.715 57.895 0.00 0.00 38.71 4.17
100 101 1.152902 TCTGCTGTTGCCTGTTGCT 60.153 52.632 0.00 0.00 42.00 3.91
101 102 1.007734 CTGCTGTTGCCTGTTGCTG 60.008 57.895 0.00 0.00 42.00 4.41
102 103 2.337532 GCTGTTGCCTGTTGCTGG 59.662 61.111 0.00 0.00 42.00 4.85
103 104 3.045142 CTGTTGCCTGTTGCTGGG 58.955 61.111 0.00 0.00 42.00 4.45
108 109 2.914097 GCCTGTTGCTGGGCACTT 60.914 61.111 0.00 0.00 46.84 3.16
109 110 3.045142 CCTGTTGCTGGGCACTTG 58.955 61.111 0.00 0.00 38.71 3.16
110 111 2.567497 CCTGTTGCTGGGCACTTGG 61.567 63.158 0.00 0.00 38.71 3.61
111 112 2.521465 TGTTGCTGGGCACTTGGG 60.521 61.111 0.00 0.00 38.71 4.12
112 113 3.994853 GTTGCTGGGCACTTGGGC 61.995 66.667 0.00 0.00 38.71 5.36
113 114 4.223125 TTGCTGGGCACTTGGGCT 62.223 61.111 0.00 0.00 38.71 5.19
114 115 4.980702 TGCTGGGCACTTGGGCTG 62.981 66.667 0.00 0.00 42.84 4.85
115 116 4.666253 GCTGGGCACTTGGGCTGA 62.666 66.667 0.00 0.00 42.84 4.26
116 117 2.357836 CTGGGCACTTGGGCTGAT 59.642 61.111 0.00 0.00 42.84 2.90
117 118 2.036098 TGGGCACTTGGGCTGATG 59.964 61.111 0.00 0.00 42.84 3.07
118 119 2.757099 GGGCACTTGGGCTGATGG 60.757 66.667 0.00 0.00 42.84 3.51
119 120 2.757099 GGCACTTGGGCTGATGGG 60.757 66.667 0.00 0.00 39.42 4.00
120 121 3.455469 GCACTTGGGCTGATGGGC 61.455 66.667 0.00 0.00 40.05 5.36
121 122 2.357836 CACTTGGGCTGATGGGCT 59.642 61.111 0.00 0.00 40.65 5.19
122 123 2.050350 CACTTGGGCTGATGGGCTG 61.050 63.158 0.00 0.00 40.65 4.85
123 124 2.233566 ACTTGGGCTGATGGGCTGA 61.234 57.895 0.00 0.00 40.65 4.26
124 125 1.453379 CTTGGGCTGATGGGCTGAG 60.453 63.158 0.00 0.00 40.65 3.35
125 126 2.207501 CTTGGGCTGATGGGCTGAGT 62.208 60.000 0.00 0.00 40.65 3.41
126 127 1.792757 TTGGGCTGATGGGCTGAGTT 61.793 55.000 0.00 0.00 40.65 3.01
127 128 1.751927 GGGCTGATGGGCTGAGTTG 60.752 63.158 0.00 0.00 40.65 3.16
128 129 1.001641 GGCTGATGGGCTGAGTTGT 60.002 57.895 0.00 0.00 37.53 3.32
129 130 1.310933 GGCTGATGGGCTGAGTTGTG 61.311 60.000 0.00 0.00 37.53 3.33
130 131 0.321919 GCTGATGGGCTGAGTTGTGA 60.322 55.000 0.00 0.00 0.00 3.58
131 132 1.883638 GCTGATGGGCTGAGTTGTGAA 60.884 52.381 0.00 0.00 0.00 3.18
132 133 2.082231 CTGATGGGCTGAGTTGTGAAG 58.918 52.381 0.00 0.00 0.00 3.02
133 134 1.699083 TGATGGGCTGAGTTGTGAAGA 59.301 47.619 0.00 0.00 0.00 2.87
134 135 2.289882 TGATGGGCTGAGTTGTGAAGAG 60.290 50.000 0.00 0.00 0.00 2.85
135 136 1.131638 TGGGCTGAGTTGTGAAGAGT 58.868 50.000 0.00 0.00 0.00 3.24
136 137 2.325484 TGGGCTGAGTTGTGAAGAGTA 58.675 47.619 0.00 0.00 0.00 2.59
137 138 2.300152 TGGGCTGAGTTGTGAAGAGTAG 59.700 50.000 0.00 0.00 0.00 2.57
138 139 2.300437 GGGCTGAGTTGTGAAGAGTAGT 59.700 50.000 0.00 0.00 0.00 2.73
139 140 3.510360 GGGCTGAGTTGTGAAGAGTAGTA 59.490 47.826 0.00 0.00 0.00 1.82
140 141 4.160626 GGGCTGAGTTGTGAAGAGTAGTAT 59.839 45.833 0.00 0.00 0.00 2.12
141 142 5.337652 GGGCTGAGTTGTGAAGAGTAGTATT 60.338 44.000 0.00 0.00 0.00 1.89
142 143 5.578727 GGCTGAGTTGTGAAGAGTAGTATTG 59.421 44.000 0.00 0.00 0.00 1.90
143 144 6.390721 GCTGAGTTGTGAAGAGTAGTATTGA 58.609 40.000 0.00 0.00 0.00 2.57
144 145 6.868864 GCTGAGTTGTGAAGAGTAGTATTGAA 59.131 38.462 0.00 0.00 0.00 2.69
145 146 7.385205 GCTGAGTTGTGAAGAGTAGTATTGAAA 59.615 37.037 0.00 0.00 0.00 2.69
146 147 9.261180 CTGAGTTGTGAAGAGTAGTATTGAAAA 57.739 33.333 0.00 0.00 0.00 2.29
147 148 9.607988 TGAGTTGTGAAGAGTAGTATTGAAAAA 57.392 29.630 0.00 0.00 0.00 1.94
175 176 4.423625 TTTTTGGAGGATAGGCTAGAGC 57.576 45.455 0.00 0.00 41.14 4.09
186 187 3.925453 GCTAGAGCCCTATGAAGCC 57.075 57.895 0.00 0.00 34.31 4.35
187 188 0.323302 GCTAGAGCCCTATGAAGCCC 59.677 60.000 0.00 0.00 34.31 5.19
188 189 1.722034 CTAGAGCCCTATGAAGCCCA 58.278 55.000 0.00 0.00 0.00 5.36
189 190 1.346068 CTAGAGCCCTATGAAGCCCAC 59.654 57.143 0.00 0.00 0.00 4.61
190 191 1.149401 GAGCCCTATGAAGCCCACC 59.851 63.158 0.00 0.00 0.00 4.61
191 192 1.308216 AGCCCTATGAAGCCCACCT 60.308 57.895 0.00 0.00 0.00 4.00
192 193 0.030092 AGCCCTATGAAGCCCACCTA 60.030 55.000 0.00 0.00 0.00 3.08
193 194 0.108774 GCCCTATGAAGCCCACCTAC 59.891 60.000 0.00 0.00 0.00 3.18
194 195 1.807814 CCCTATGAAGCCCACCTACT 58.192 55.000 0.00 0.00 0.00 2.57
195 196 1.417890 CCCTATGAAGCCCACCTACTG 59.582 57.143 0.00 0.00 0.00 2.74
196 197 1.417890 CCTATGAAGCCCACCTACTGG 59.582 57.143 0.00 0.00 40.26 4.00
197 198 2.398588 CTATGAAGCCCACCTACTGGA 58.601 52.381 0.00 0.00 43.95 3.86
198 199 0.912486 ATGAAGCCCACCTACTGGAC 59.088 55.000 0.00 0.00 43.95 4.02
199 200 0.178903 TGAAGCCCACCTACTGGACT 60.179 55.000 0.00 0.00 43.95 3.85
200 201 0.537653 GAAGCCCACCTACTGGACTC 59.462 60.000 0.00 0.00 43.95 3.36
201 202 1.258445 AAGCCCACCTACTGGACTCG 61.258 60.000 0.00 0.00 43.95 4.18
202 203 2.893398 CCCACCTACTGGACTCGC 59.107 66.667 0.00 0.00 43.95 5.03
203 204 2.722201 CCCACCTACTGGACTCGCC 61.722 68.421 0.00 0.00 43.95 5.54
204 205 1.982395 CCACCTACTGGACTCGCCA 60.982 63.158 0.00 0.00 43.95 5.69
205 206 1.215647 CACCTACTGGACTCGCCAC 59.784 63.158 0.00 0.00 43.33 5.01
359 468 1.024271 TCAAATTGCATAGGCTCGGC 58.976 50.000 0.00 0.00 41.91 5.54
397 601 0.396139 TGAAGCCATCTTGGATGCCC 60.396 55.000 0.00 0.00 40.96 5.36
399 603 0.263765 AAGCCATCTTGGATGCCCAT 59.736 50.000 0.00 0.00 43.12 4.00
419 623 2.610859 ACTGGGAGGCCGGAACAT 60.611 61.111 5.05 0.00 0.00 2.71
429 1020 1.065273 CCGGAACATACTCGGACGG 59.935 63.158 0.00 0.00 45.96 4.79
459 1050 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
460 1051 4.976116 CGCCGGAAATCCTGAAATAAATTC 59.024 41.667 5.05 0.00 38.60 2.17
490 1081 0.034059 CGAGCACCAGGACTTGAACT 59.966 55.000 0.00 0.00 0.00 3.01
491 1082 1.802069 GAGCACCAGGACTTGAACTC 58.198 55.000 0.00 0.00 0.00 3.01
497 1088 1.694150 CCAGGACTTGAACTCTGGTGA 59.306 52.381 0.00 0.00 41.21 4.02
500 1091 1.346068 GGACTTGAACTCTGGTGAGCT 59.654 52.381 0.00 0.00 43.85 4.09
509 1100 2.648611 CTCTGGTGAGCTGGGGATACC 61.649 61.905 0.00 0.00 45.07 2.73
527 1118 2.188817 ACCACTGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
535 1126 3.199946 GTCCCTCTAACCATCCAATCACA 59.800 47.826 0.00 0.00 0.00 3.58
536 1127 3.455910 TCCCTCTAACCATCCAATCACAG 59.544 47.826 0.00 0.00 0.00 3.66
754 1356 4.382040 CCATGATACTGTCGAGGACAAACT 60.382 45.833 0.00 0.00 42.26 2.66
923 1526 9.066892 CAATAAGAAGGCCAATGCTTTAGTATA 57.933 33.333 5.01 0.00 36.85 1.47
1073 1679 1.690219 GACATGGACCAGCCGGAGAT 61.690 60.000 5.05 0.00 40.66 2.75
1164 1770 3.435186 GTCAAGAAGCAGCGGGGC 61.435 66.667 0.00 0.00 0.00 5.80
1215 1821 0.247736 ACCTTCTGCACGAGATCACC 59.752 55.000 0.00 0.00 0.00 4.02
1356 1962 2.418910 CGTCGAGATGAGCCCCAGT 61.419 63.158 0.00 0.00 0.00 4.00
1368 1974 2.401766 CCCCAGTGTCATCAAGCGC 61.402 63.158 0.00 0.00 0.00 5.92
1398 2004 2.571757 GTCATGCAGGACGACCGA 59.428 61.111 16.59 0.00 41.83 4.69
1531 2137 0.317479 GCTCGGGCTCACGGTAATAT 59.683 55.000 0.00 0.00 35.22 1.28
1532 2138 1.669211 GCTCGGGCTCACGGTAATATC 60.669 57.143 0.00 0.00 35.22 1.63
1537 2143 2.039879 GGGCTCACGGTAATATCCCATT 59.960 50.000 0.00 0.00 32.68 3.16
1582 2209 2.447408 GTGCGCACGGTGTGTATAA 58.553 52.632 26.77 4.34 35.75 0.98
1598 2225 7.856894 GGTGTGTATAACGTGTTAACAAAACAT 59.143 33.333 10.51 4.75 32.23 2.71
1849 2476 2.833121 TCGCGGATCCTGCAGCTA 60.833 61.111 22.50 0.00 0.00 3.32
2629 3293 1.687054 CCTGATGGCCACCATGTTCAT 60.687 52.381 8.16 0.00 45.26 2.57
2690 3354 2.670414 CAGCTTCTTCATCTTCACCGTC 59.330 50.000 0.00 0.00 0.00 4.79
2777 3441 3.112709 GAGACCTCGCACAACGCC 61.113 66.667 0.00 0.00 43.23 5.68
2963 3627 1.454201 TCGTCGTCTTCATCAGCTCT 58.546 50.000 0.00 0.00 0.00 4.09
2996 3660 5.422214 ACTTCATCCTTGGGTAAGTACAG 57.578 43.478 0.00 0.00 31.80 2.74
2998 3662 6.021030 ACTTCATCCTTGGGTAAGTACAGTA 58.979 40.000 0.00 0.00 31.80 2.74
2999 3663 5.927281 TCATCCTTGGGTAAGTACAGTAC 57.073 43.478 2.05 2.05 31.80 2.73
3000 3664 5.335261 TCATCCTTGGGTAAGTACAGTACA 58.665 41.667 13.37 0.00 31.80 2.90
3008 3672 8.522542 TTGGGTAAGTACAGTACATTTTGTTT 57.477 30.769 13.37 0.00 0.00 2.83
3009 3673 8.522542 TGGGTAAGTACAGTACATTTTGTTTT 57.477 30.769 13.37 0.00 0.00 2.43
3010 3674 8.968969 TGGGTAAGTACAGTACATTTTGTTTTT 58.031 29.630 13.37 0.00 0.00 1.94
3097 3764 0.393808 TATCGGAAAACTGGGCCAGC 60.394 55.000 33.04 16.54 34.37 4.85
3141 3900 3.854666 ACATACAGTGCTGATGTCTGTC 58.145 45.455 6.17 0.00 41.66 3.51
3143 3902 2.739885 ACAGTGCTGATGTCTGTCTC 57.260 50.000 6.17 0.00 37.84 3.36
3149 3908 1.824230 GCTGATGTCTGTCTCTCTGGT 59.176 52.381 0.00 0.00 0.00 4.00
3301 4061 2.194056 CCGTACGAGGGCCTCCTA 59.806 66.667 27.36 17.38 45.05 2.94
3319 4079 1.079875 TAATGAACGAGTTCGGCGGC 61.080 55.000 7.21 0.00 44.95 6.53
3334 4094 3.423154 GGCACCCGCAACTTCTCG 61.423 66.667 0.00 0.00 41.24 4.04
3407 4167 2.281484 TCAAGGACCGCAAGTGGC 60.281 61.111 0.00 0.00 39.90 5.01
3491 4251 0.519077 CTTCGCCTCCAAGAACAAGC 59.481 55.000 0.00 0.00 0.00 4.01
3500 4260 2.631062 TCCAAGAACAAGCGGAAGTAGA 59.369 45.455 0.00 0.00 0.00 2.59
3502 4262 3.372206 CCAAGAACAAGCGGAAGTAGATG 59.628 47.826 0.00 0.00 0.00 2.90
3528 4293 2.027751 GCCTCGCCTGTATCGACC 59.972 66.667 0.00 0.00 32.08 4.79
3539 4304 3.826729 CCTGTATCGACCTATCATGGTGA 59.173 47.826 0.00 0.00 41.00 4.02
3555 4325 5.237127 TCATGGTGATTTGCTAGCTTAATCG 59.763 40.000 24.85 16.35 32.30 3.34
3556 4326 3.876914 TGGTGATTTGCTAGCTTAATCGG 59.123 43.478 24.85 0.00 32.30 4.18
3568 4342 4.787381 GCTTAATCGGAAGCTCTTTCTC 57.213 45.455 9.49 0.00 46.85 2.87
3569 4343 4.438148 GCTTAATCGGAAGCTCTTTCTCT 58.562 43.478 9.49 0.00 46.85 3.10
3570 4344 4.873259 GCTTAATCGGAAGCTCTTTCTCTT 59.127 41.667 9.49 0.00 46.85 2.85
3571 4345 5.006261 GCTTAATCGGAAGCTCTTTCTCTTC 59.994 44.000 9.49 0.00 46.85 2.87
3572 4346 2.638556 TCGGAAGCTCTTTCTCTTCG 57.361 50.000 0.00 0.00 39.54 3.79
3573 4347 1.202582 TCGGAAGCTCTTTCTCTTCGG 59.797 52.381 0.00 0.00 39.54 4.30
3574 4348 1.364721 GGAAGCTCTTTCTCTTCGGC 58.635 55.000 0.00 0.00 39.54 5.54
3575 4349 0.995728 GAAGCTCTTTCTCTTCGGCG 59.004 55.000 0.00 0.00 32.83 6.46
3587 4361 4.944048 TCTCTTCGGCGATCATTCATTTA 58.056 39.130 11.76 0.00 0.00 1.40
3588 4362 4.745125 TCTCTTCGGCGATCATTCATTTAC 59.255 41.667 11.76 0.00 0.00 2.01
3589 4363 3.489416 TCTTCGGCGATCATTCATTTACG 59.511 43.478 11.76 0.00 0.00 3.18
3590 4364 2.131972 TCGGCGATCATTCATTTACGG 58.868 47.619 4.99 0.00 0.00 4.02
3591 4365 2.131972 CGGCGATCATTCATTTACGGA 58.868 47.619 0.00 0.00 0.00 4.69
3592 4366 2.155732 CGGCGATCATTCATTTACGGAG 59.844 50.000 0.00 0.00 0.00 4.63
3593 4367 2.096218 GGCGATCATTCATTTACGGAGC 60.096 50.000 0.00 0.00 0.00 4.70
3594 4368 2.802816 GCGATCATTCATTTACGGAGCT 59.197 45.455 0.00 0.00 0.00 4.09
3595 4369 3.363378 GCGATCATTCATTTACGGAGCTG 60.363 47.826 0.00 0.00 0.00 4.24
3596 4370 3.185188 CGATCATTCATTTACGGAGCTGG 59.815 47.826 0.00 0.00 0.00 4.85
3597 4371 3.904800 TCATTCATTTACGGAGCTGGA 57.095 42.857 0.00 0.00 0.00 3.86
3598 4372 4.422073 TCATTCATTTACGGAGCTGGAT 57.578 40.909 0.00 0.00 0.00 3.41
3599 4373 5.545063 TCATTCATTTACGGAGCTGGATA 57.455 39.130 0.00 0.00 0.00 2.59
3600 4374 5.297547 TCATTCATTTACGGAGCTGGATAC 58.702 41.667 0.00 0.00 0.00 2.24
3619 4393 7.417496 GGATACAAGAAAAGTGACTTTACGT 57.583 36.000 11.43 8.55 31.99 3.57
3620 4394 7.858583 GGATACAAGAAAAGTGACTTTACGTT 58.141 34.615 11.43 2.64 31.99 3.99
3621 4395 7.797123 GGATACAAGAAAAGTGACTTTACGTTG 59.203 37.037 11.43 15.68 31.99 4.10
3622 4396 5.329493 ACAAGAAAAGTGACTTTACGTTGC 58.671 37.500 11.43 0.00 31.99 4.17
3623 4397 5.123344 ACAAGAAAAGTGACTTTACGTTGCT 59.877 36.000 11.43 0.00 31.99 3.91
3624 4398 5.813080 AGAAAAGTGACTTTACGTTGCTT 57.187 34.783 11.43 0.00 31.99 3.91
3625 4399 5.807344 AGAAAAGTGACTTTACGTTGCTTC 58.193 37.500 11.43 2.71 31.99 3.86
3633 4407 5.065346 TGACTTTACGTTGCTTCAATTGACA 59.935 36.000 7.89 0.63 0.00 3.58
3741 4522 1.917273 TAGAGCGTGCCGTGATTTAC 58.083 50.000 0.00 0.00 0.00 2.01
3757 4538 8.331022 CCGTGATTTACTCTGATCAGTATTTTG 58.669 37.037 21.92 9.16 33.27 2.44
3762 4543 4.759782 ACTCTGATCAGTATTTTGTCCGG 58.240 43.478 21.92 0.00 0.00 5.14
3810 4591 1.295423 GTCGCACCTCTTGGGCTTA 59.705 57.895 0.00 0.00 38.07 3.09
3833 4614 0.607620 CAACCGTTTGGGGATGCATT 59.392 50.000 0.00 0.00 41.60 3.56
3840 4621 2.695147 GTTTGGGGATGCATTTCCTAGG 59.305 50.000 16.76 0.82 35.97 3.02
3878 4659 7.025963 CAGAAGGACAATTTTTCTCATGCTAC 58.974 38.462 0.00 0.00 0.00 3.58
3879 4660 6.944862 AGAAGGACAATTTTTCTCATGCTACT 59.055 34.615 0.00 0.00 0.00 2.57
3922 4703 1.597027 AGCCACCACGAAAAGGACG 60.597 57.895 0.00 0.00 0.00 4.79
3923 4704 2.613506 GCCACCACGAAAAGGACGG 61.614 63.158 0.00 0.00 34.93 4.79
3951 4732 0.721718 CTTTCGTCCCTTTGCTAGCG 59.278 55.000 10.77 0.00 0.00 4.26
3978 4760 0.107214 TGGCCAACCGATCTTGATCC 60.107 55.000 0.61 0.00 39.70 3.36
3993 4775 4.222810 TCTTGATCCCTTTCTCAACGATCA 59.777 41.667 0.00 0.00 38.00 2.92
4081 4868 2.126618 TTCGGTCGTGCTACAGCG 60.127 61.111 0.00 0.00 45.83 5.18
4088 4875 2.049433 GTGCTACAGCGACACGGT 60.049 61.111 0.00 0.00 45.83 4.83
4089 4876 2.087009 GTGCTACAGCGACACGGTC 61.087 63.158 0.00 0.00 45.83 4.79
4118 4905 3.925913 CCGGCATGTAAAATGTTTCCAAG 59.074 43.478 0.00 0.00 0.00 3.61
4119 4906 3.367630 CGGCATGTAAAATGTTTCCAAGC 59.632 43.478 0.00 0.00 0.00 4.01
4121 4908 4.937015 GGCATGTAAAATGTTTCCAAGCAT 59.063 37.500 0.00 0.00 0.00 3.79
4161 4948 2.511373 CTGCCGCGCACAGGATAA 60.511 61.111 17.42 0.00 33.79 1.75
4163 4950 0.599991 CTGCCGCGCACAGGATAATA 60.600 55.000 17.42 0.00 33.79 0.98
4164 4951 0.179070 TGCCGCGCACAGGATAATAA 60.179 50.000 8.75 0.00 31.71 1.40
4165 4952 0.512952 GCCGCGCACAGGATAATAAG 59.487 55.000 8.75 0.00 0.00 1.73
4166 4953 0.512952 CCGCGCACAGGATAATAAGC 59.487 55.000 8.75 0.00 0.00 3.09
4167 4954 0.161658 CGCGCACAGGATAATAAGCG 59.838 55.000 8.75 0.00 46.99 4.68
4168 4955 1.217882 GCGCACAGGATAATAAGCGT 58.782 50.000 0.30 0.00 46.09 5.07
4169 4956 2.400399 GCGCACAGGATAATAAGCGTA 58.600 47.619 0.30 0.00 46.09 4.42
4170 4957 2.798283 GCGCACAGGATAATAAGCGTAA 59.202 45.455 0.30 0.00 46.09 3.18
4171 4958 3.246699 GCGCACAGGATAATAAGCGTAAA 59.753 43.478 0.30 0.00 46.09 2.01
4172 4959 4.608445 GCGCACAGGATAATAAGCGTAAAG 60.608 45.833 0.30 0.00 46.09 1.85
4173 4960 4.506654 CGCACAGGATAATAAGCGTAAAGT 59.493 41.667 0.00 0.00 40.25 2.66
4174 4961 5.332355 CGCACAGGATAATAAGCGTAAAGTC 60.332 44.000 0.00 0.00 40.25 3.01
4176 4963 6.074249 GCACAGGATAATAAGCGTAAAGTCTC 60.074 42.308 0.00 0.00 0.00 3.36
4177 4964 7.203910 CACAGGATAATAAGCGTAAAGTCTCT 58.796 38.462 0.00 0.00 0.00 3.10
4178 4965 7.168302 CACAGGATAATAAGCGTAAAGTCTCTG 59.832 40.741 0.00 0.00 0.00 3.35
4179 4966 6.144724 CAGGATAATAAGCGTAAAGTCTCTGC 59.855 42.308 0.00 0.00 0.00 4.26
4180 4967 5.117287 GGATAATAAGCGTAAAGTCTCTGCG 59.883 44.000 0.00 0.00 0.00 5.18
4181 4968 3.505464 ATAAGCGTAAAGTCTCTGCGT 57.495 42.857 0.00 0.00 0.00 5.24
4182 4969 1.419374 AAGCGTAAAGTCTCTGCGTG 58.581 50.000 0.00 0.00 0.00 5.34
4246 5033 7.454380 AGTCCTCCAATCCAGAATCTTATCTAG 59.546 40.741 0.00 0.00 0.00 2.43
4352 5140 5.220835 GCCTTTGCTTGCTAAATTTGTTTGT 60.221 36.000 0.00 0.00 33.53 2.83
4372 5160 2.751259 GTGCAAAAGAGATGCTCCATGA 59.249 45.455 0.00 0.00 44.14 3.07
4373 5161 3.014623 TGCAAAAGAGATGCTCCATGAG 58.985 45.455 0.00 0.00 44.14 2.90
4374 5162 3.015327 GCAAAAGAGATGCTCCATGAGT 58.985 45.455 0.00 0.00 40.64 3.41
4375 5163 3.181499 GCAAAAGAGATGCTCCATGAGTG 60.181 47.826 0.00 0.00 40.64 3.51
4376 5164 2.328819 AAGAGATGCTCCATGAGTGC 57.671 50.000 0.00 0.00 35.49 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.705638 CTGCACACTCCACACGCG 61.706 66.667 3.53 3.53 0.00 6.01
2 3 4.017877 GCTGCACACTCCACACGC 62.018 66.667 0.00 0.00 0.00 5.34
3 4 1.889105 AAGCTGCACACTCCACACG 60.889 57.895 1.02 0.00 0.00 4.49
4 5 1.650912 CAAGCTGCACACTCCACAC 59.349 57.895 1.02 0.00 0.00 3.82
5 6 2.188829 GCAAGCTGCACACTCCACA 61.189 57.895 1.02 0.00 44.26 4.17
6 7 2.641559 GCAAGCTGCACACTCCAC 59.358 61.111 1.02 0.00 44.26 4.02
7 8 2.974148 CGCAAGCTGCACACTCCA 60.974 61.111 1.02 0.00 45.36 3.86
8 9 2.974698 ACGCAAGCTGCACACTCC 60.975 61.111 1.02 0.00 45.36 3.85
9 10 2.250485 CACGCAAGCTGCACACTC 59.750 61.111 1.02 0.00 45.36 3.51
10 11 3.282157 CCACGCAAGCTGCACACT 61.282 61.111 1.02 0.00 45.36 3.55
11 12 3.245948 CTCCACGCAAGCTGCACAC 62.246 63.158 1.02 0.00 45.36 3.82
12 13 2.974148 CTCCACGCAAGCTGCACA 60.974 61.111 1.02 0.00 45.36 4.57
13 14 4.395583 GCTCCACGCAAGCTGCAC 62.396 66.667 1.02 0.00 45.36 4.57
16 17 3.429141 CAGGCTCCACGCAAGCTG 61.429 66.667 0.00 0.00 45.62 4.24
17 18 4.711949 CCAGGCTCCACGCAAGCT 62.712 66.667 4.55 0.00 45.62 3.74
18 19 4.704833 TCCAGGCTCCACGCAAGC 62.705 66.667 0.00 0.00 45.62 4.01
19 20 2.435586 CTCCAGGCTCCACGCAAG 60.436 66.667 0.00 0.00 41.67 4.01
20 21 4.704833 GCTCCAGGCTCCACGCAA 62.705 66.667 0.00 0.00 41.67 4.85
24 25 4.106925 CAGGGCTCCAGGCTCCAC 62.107 72.222 0.00 0.00 43.87 4.02
27 28 2.771762 ATCCAGGGCTCCAGGCTC 60.772 66.667 0.00 0.00 42.95 4.70
28 29 3.095163 CATCCAGGGCTCCAGGCT 61.095 66.667 0.00 0.00 41.46 4.58
29 30 3.415087 ACATCCAGGGCTCCAGGC 61.415 66.667 0.00 0.00 40.90 4.85
30 31 2.304056 ACACATCCAGGGCTCCAGG 61.304 63.158 0.00 0.00 0.00 4.45
31 32 1.077930 CACACATCCAGGGCTCCAG 60.078 63.158 0.00 0.00 0.00 3.86
32 33 3.080641 CACACATCCAGGGCTCCA 58.919 61.111 0.00 0.00 0.00 3.86
33 34 2.439156 GCACACATCCAGGGCTCC 60.439 66.667 0.00 0.00 0.00 4.70
34 35 1.001641 AAGCACACATCCAGGGCTC 60.002 57.895 0.00 0.00 32.84 4.70
35 36 1.001641 GAAGCACACATCCAGGGCT 60.002 57.895 0.00 0.00 36.13 5.19
36 37 2.401766 CGAAGCACACATCCAGGGC 61.402 63.158 0.00 0.00 0.00 5.19
37 38 0.606401 AACGAAGCACACATCCAGGG 60.606 55.000 0.00 0.00 0.00 4.45
38 39 0.518636 CAACGAAGCACACATCCAGG 59.481 55.000 0.00 0.00 0.00 4.45
39 40 0.110056 GCAACGAAGCACACATCCAG 60.110 55.000 0.00 0.00 0.00 3.86
40 41 0.534877 AGCAACGAAGCACACATCCA 60.535 50.000 6.62 0.00 36.85 3.41
41 42 0.166814 GAGCAACGAAGCACACATCC 59.833 55.000 6.62 0.00 36.85 3.51
42 43 1.151668 AGAGCAACGAAGCACACATC 58.848 50.000 6.62 0.00 36.85 3.06
43 44 2.289072 ACTAGAGCAACGAAGCACACAT 60.289 45.455 0.00 0.00 36.85 3.21
44 45 1.068588 ACTAGAGCAACGAAGCACACA 59.931 47.619 0.00 0.00 36.85 3.72
45 46 1.457303 CACTAGAGCAACGAAGCACAC 59.543 52.381 0.00 0.00 36.85 3.82
46 47 1.068588 ACACTAGAGCAACGAAGCACA 59.931 47.619 0.00 0.00 36.85 4.57
47 48 1.457303 CACACTAGAGCAACGAAGCAC 59.543 52.381 0.00 0.56 36.85 4.40
48 49 1.605457 CCACACTAGAGCAACGAAGCA 60.605 52.381 0.00 0.00 36.85 3.91
49 50 1.071605 CCACACTAGAGCAACGAAGC 58.928 55.000 0.00 0.00 0.00 3.86
50 51 1.071605 GCCACACTAGAGCAACGAAG 58.928 55.000 0.00 0.00 0.00 3.79
51 52 0.320421 GGCCACACTAGAGCAACGAA 60.320 55.000 0.00 0.00 0.00 3.85
52 53 1.292223 GGCCACACTAGAGCAACGA 59.708 57.895 0.00 0.00 0.00 3.85
53 54 2.094659 CGGCCACACTAGAGCAACG 61.095 63.158 2.24 0.00 0.00 4.10
54 55 1.004918 ACGGCCACACTAGAGCAAC 60.005 57.895 2.24 0.00 0.00 4.17
55 56 1.005037 CACGGCCACACTAGAGCAA 60.005 57.895 2.24 0.00 0.00 3.91
56 57 2.207229 ACACGGCCACACTAGAGCA 61.207 57.895 2.24 0.00 0.00 4.26
57 58 1.738099 CACACGGCCACACTAGAGC 60.738 63.158 2.24 0.00 0.00 4.09
58 59 1.079819 CCACACGGCCACACTAGAG 60.080 63.158 2.24 0.00 0.00 2.43
59 60 2.579657 CCCACACGGCCACACTAGA 61.580 63.158 2.24 0.00 0.00 2.43
60 61 2.047274 CCCACACGGCCACACTAG 60.047 66.667 2.24 0.00 0.00 2.57
70 71 4.694233 AGCAGAGCAGCCCACACG 62.694 66.667 0.00 0.00 34.23 4.49
71 72 3.054503 CAGCAGAGCAGCCCACAC 61.055 66.667 0.00 0.00 34.23 3.82
72 73 3.124051 AACAGCAGAGCAGCCCACA 62.124 57.895 0.00 0.00 34.23 4.17
73 74 2.282040 AACAGCAGAGCAGCCCAC 60.282 61.111 0.00 0.00 34.23 4.61
74 75 2.281970 CAACAGCAGAGCAGCCCA 60.282 61.111 0.00 0.00 34.23 5.36
75 76 3.745803 GCAACAGCAGAGCAGCCC 61.746 66.667 0.00 0.00 34.23 5.19
76 77 3.745803 GGCAACAGCAGAGCAGCC 61.746 66.667 0.00 0.00 34.23 4.85
77 78 2.672307 AGGCAACAGCAGAGCAGC 60.672 61.111 0.00 0.00 41.41 5.25
78 79 1.170919 AACAGGCAACAGCAGAGCAG 61.171 55.000 0.00 0.00 41.41 4.24
79 80 1.152902 AACAGGCAACAGCAGAGCA 60.153 52.632 0.00 0.00 41.41 4.26
80 81 1.285023 CAACAGGCAACAGCAGAGC 59.715 57.895 0.00 0.00 41.41 4.09
81 82 1.285023 GCAACAGGCAACAGCAGAG 59.715 57.895 0.00 0.00 43.97 3.35
82 83 3.435590 GCAACAGGCAACAGCAGA 58.564 55.556 0.00 0.00 43.97 4.26
92 93 2.567497 CCAAGTGCCCAGCAACAGG 61.567 63.158 0.00 0.00 41.47 4.00
93 94 2.567497 CCCAAGTGCCCAGCAACAG 61.567 63.158 0.00 0.00 41.47 3.16
94 95 2.521465 CCCAAGTGCCCAGCAACA 60.521 61.111 0.00 0.00 41.47 3.33
95 96 3.994853 GCCCAAGTGCCCAGCAAC 61.995 66.667 0.00 0.00 41.47 4.17
96 97 4.223125 AGCCCAAGTGCCCAGCAA 62.223 61.111 0.00 0.00 41.47 3.91
97 98 4.980702 CAGCCCAAGTGCCCAGCA 62.981 66.667 0.00 0.00 35.60 4.41
98 99 3.951769 ATCAGCCCAAGTGCCCAGC 62.952 63.158 0.00 0.00 0.00 4.85
99 100 2.050350 CATCAGCCCAAGTGCCCAG 61.050 63.158 0.00 0.00 0.00 4.45
100 101 2.036098 CATCAGCCCAAGTGCCCA 59.964 61.111 0.00 0.00 0.00 5.36
101 102 2.757099 CCATCAGCCCAAGTGCCC 60.757 66.667 0.00 0.00 0.00 5.36
102 103 2.757099 CCCATCAGCCCAAGTGCC 60.757 66.667 0.00 0.00 0.00 5.01
103 104 3.455469 GCCCATCAGCCCAAGTGC 61.455 66.667 0.00 0.00 0.00 4.40
104 105 2.050350 CAGCCCATCAGCCCAAGTG 61.050 63.158 0.00 0.00 0.00 3.16
105 106 2.207501 CTCAGCCCATCAGCCCAAGT 62.208 60.000 0.00 0.00 0.00 3.16
106 107 1.453379 CTCAGCCCATCAGCCCAAG 60.453 63.158 0.00 0.00 0.00 3.61
107 108 1.792757 AACTCAGCCCATCAGCCCAA 61.793 55.000 0.00 0.00 0.00 4.12
108 109 2.233566 AACTCAGCCCATCAGCCCA 61.234 57.895 0.00 0.00 0.00 5.36
109 110 1.751927 CAACTCAGCCCATCAGCCC 60.752 63.158 0.00 0.00 0.00 5.19
110 111 1.001641 ACAACTCAGCCCATCAGCC 60.002 57.895 0.00 0.00 0.00 4.85
111 112 0.321919 TCACAACTCAGCCCATCAGC 60.322 55.000 0.00 0.00 0.00 4.26
112 113 2.082231 CTTCACAACTCAGCCCATCAG 58.918 52.381 0.00 0.00 0.00 2.90
113 114 1.699083 TCTTCACAACTCAGCCCATCA 59.301 47.619 0.00 0.00 0.00 3.07
114 115 2.289945 ACTCTTCACAACTCAGCCCATC 60.290 50.000 0.00 0.00 0.00 3.51
115 116 1.701847 ACTCTTCACAACTCAGCCCAT 59.298 47.619 0.00 0.00 0.00 4.00
116 117 1.131638 ACTCTTCACAACTCAGCCCA 58.868 50.000 0.00 0.00 0.00 5.36
117 118 2.300437 ACTACTCTTCACAACTCAGCCC 59.700 50.000 0.00 0.00 0.00 5.19
118 119 3.669251 ACTACTCTTCACAACTCAGCC 57.331 47.619 0.00 0.00 0.00 4.85
119 120 6.390721 TCAATACTACTCTTCACAACTCAGC 58.609 40.000 0.00 0.00 0.00 4.26
120 121 8.818141 TTTCAATACTACTCTTCACAACTCAG 57.182 34.615 0.00 0.00 0.00 3.35
121 122 9.607988 TTTTTCAATACTACTCTTCACAACTCA 57.392 29.630 0.00 0.00 0.00 3.41
154 155 4.423625 GCTCTAGCCTATCCTCCAAAAA 57.576 45.455 0.00 0.00 34.31 1.94
168 169 0.323302 GGGCTTCATAGGGCTCTAGC 59.677 60.000 0.00 0.00 41.14 3.42
169 170 1.346068 GTGGGCTTCATAGGGCTCTAG 59.654 57.143 0.00 0.00 0.00 2.43
170 171 1.424638 GTGGGCTTCATAGGGCTCTA 58.575 55.000 0.00 0.00 0.00 2.43
171 172 1.348775 GGTGGGCTTCATAGGGCTCT 61.349 60.000 0.00 0.00 0.00 4.09
172 173 1.149401 GGTGGGCTTCATAGGGCTC 59.851 63.158 0.00 0.00 0.00 4.70
173 174 0.030092 TAGGTGGGCTTCATAGGGCT 60.030 55.000 0.00 0.00 0.00 5.19
174 175 0.108774 GTAGGTGGGCTTCATAGGGC 59.891 60.000 0.00 0.00 0.00 5.19
175 176 1.417890 CAGTAGGTGGGCTTCATAGGG 59.582 57.143 0.00 0.00 0.00 3.53
176 177 1.417890 CCAGTAGGTGGGCTTCATAGG 59.582 57.143 0.00 0.00 43.63 2.57
177 178 2.918712 CCAGTAGGTGGGCTTCATAG 57.081 55.000 0.00 0.00 43.63 2.23
187 188 3.417994 CAGTGGCGAGTCCAGTAGGTG 62.418 61.905 0.00 0.00 46.70 4.00
188 189 1.251527 CAGTGGCGAGTCCAGTAGGT 61.252 60.000 0.00 0.00 46.70 3.08
189 190 1.513158 CAGTGGCGAGTCCAGTAGG 59.487 63.158 0.00 0.00 46.70 3.18
190 191 1.513158 CCAGTGGCGAGTCCAGTAG 59.487 63.158 0.00 0.00 46.70 2.57
191 192 2.646175 GCCAGTGGCGAGTCCAGTA 61.646 63.158 20.55 0.00 46.70 2.74
202 203 0.890683 GAATCTTGGTTGGCCAGTGG 59.109 55.000 5.11 4.20 46.91 4.00
203 204 1.619654 TGAATCTTGGTTGGCCAGTG 58.380 50.000 5.11 0.00 46.91 3.66
204 205 2.380064 TTGAATCTTGGTTGGCCAGT 57.620 45.000 5.11 0.00 46.91 4.00
205 206 2.827322 TGATTGAATCTTGGTTGGCCAG 59.173 45.455 5.11 0.00 46.91 4.85
224 225 5.184864 ACAACCTTTGAAGATGTGTTGTTGA 59.815 36.000 0.00 0.00 42.43 3.18
359 468 2.432628 GGAAGACGTCGCCACTGG 60.433 66.667 20.96 0.00 0.00 4.00
397 601 2.124570 CCGGCCTCCCAGTGAATG 60.125 66.667 0.00 0.00 0.00 2.67
399 603 2.528127 TTCCGGCCTCCCAGTGAA 60.528 61.111 0.00 0.00 0.00 3.18
429 1020 0.880718 GGATTTCCGGCGATCCACTC 60.881 60.000 23.38 3.98 41.21 3.51
459 1050 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
460 1051 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
490 1081 0.691078 GGTATCCCCAGCTCACCAGA 60.691 60.000 0.00 0.00 0.00 3.86
491 1082 0.982852 TGGTATCCCCAGCTCACCAG 60.983 60.000 0.00 0.00 38.72 4.00
497 1088 0.983378 GGACAGTGGTATCCCCAGCT 60.983 60.000 0.00 0.00 46.45 4.24
509 1100 2.187958 TGGATGGTTAGAGGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
511 1102 3.455910 TGATTGGATGGTTAGAGGGACAG 59.544 47.826 0.00 0.00 0.00 3.51
516 1107 3.200825 ACCTGTGATTGGATGGTTAGAGG 59.799 47.826 0.00 0.00 0.00 3.69
535 1126 3.763057 GGAATTACCTGTGAACCAACCT 58.237 45.455 0.00 0.00 35.41 3.50
567 1158 6.717997 AGTTGGGAATTACCGTGAAAATAGTT 59.282 34.615 1.21 0.00 40.11 2.24
631 1233 0.465097 CGCCAGAGAAAGGATGCCAT 60.465 55.000 0.00 0.00 0.00 4.40
912 1515 4.201773 GCAATGCGTGTGTATACTAAAGCA 60.202 41.667 16.51 16.51 37.77 3.91
923 1526 1.068610 GTAACCATGCAATGCGTGTGT 60.069 47.619 23.82 18.12 44.97 3.72
1134 1740 0.311790 TCTTGACCACCGTGTACGTC 59.688 55.000 0.00 0.00 37.74 4.34
1266 1872 0.321564 CCAGGAATGTCGACTTGCCA 60.322 55.000 26.06 3.17 0.00 4.92
1356 1962 1.446099 GGACGAGCGCTTGATGACA 60.446 57.895 31.19 0.00 0.00 3.58
1368 1974 1.298413 CATGACGTAGGCGGACGAG 60.298 63.158 19.47 5.04 45.82 4.18
1398 2004 1.903877 CGGTGAGCATGGGGAAGAGT 61.904 60.000 0.00 0.00 0.00 3.24
1518 2124 6.170506 TGATTAATGGGATATTACCGTGAGC 58.829 40.000 0.00 0.00 0.00 4.26
1531 2137 5.607939 TCTAGCGTCTTTGATTAATGGGA 57.392 39.130 0.00 0.00 0.00 4.37
1532 2138 5.991606 TGATCTAGCGTCTTTGATTAATGGG 59.008 40.000 0.00 0.00 0.00 4.00
1537 2143 6.504398 ACGAATGATCTAGCGTCTTTGATTA 58.496 36.000 0.00 0.00 30.15 1.75
1582 2209 4.142578 TGCACAGATGTTTTGTTAACACGT 60.143 37.500 8.07 0.00 32.37 4.49
1598 2225 2.104622 TGTTCCTTGATGTCTGCACAGA 59.895 45.455 0.00 0.00 35.41 3.41
1849 2476 1.115467 GGATGATGAGGTGGTCGAGT 58.885 55.000 0.00 0.00 0.00 4.18
2208 2835 1.541588 ACTTGCCGCTTTGATCTTTCC 59.458 47.619 0.00 0.00 0.00 3.13
2390 3054 0.031043 CCTCGTTCACCGTGTACACA 59.969 55.000 24.98 3.12 37.94 3.72
2629 3293 0.817634 CGTGTTGTCCTTGGGCTTGA 60.818 55.000 0.00 0.00 0.00 3.02
2690 3354 2.416701 GGAGGAGAAGAAGAAGACGCAG 60.417 54.545 0.00 0.00 0.00 5.18
2963 3627 3.627395 AGGATGAAGTTTGGCACGATA 57.373 42.857 0.00 0.00 0.00 2.92
3030 3694 3.658725 TCCATTTTCCTCCCACCAAAAA 58.341 40.909 0.00 0.00 0.00 1.94
3031 3695 3.336509 TCCATTTTCCTCCCACCAAAA 57.663 42.857 0.00 0.00 0.00 2.44
3032 3696 3.558608 ATCCATTTTCCTCCCACCAAA 57.441 42.857 0.00 0.00 0.00 3.28
3033 3697 3.172339 CAATCCATTTTCCTCCCACCAA 58.828 45.455 0.00 0.00 0.00 3.67
3034 3698 2.559478 CCAATCCATTTTCCTCCCACCA 60.559 50.000 0.00 0.00 0.00 4.17
3035 3699 2.110578 CCAATCCATTTTCCTCCCACC 58.889 52.381 0.00 0.00 0.00 4.61
3036 3700 2.760650 GACCAATCCATTTTCCTCCCAC 59.239 50.000 0.00 0.00 0.00 4.61
3037 3701 2.292192 GGACCAATCCATTTTCCTCCCA 60.292 50.000 0.00 0.00 45.47 4.37
3038 3702 2.388735 GGACCAATCCATTTTCCTCCC 58.611 52.381 0.00 0.00 45.47 4.30
3039 3703 2.024414 CGGACCAATCCATTTTCCTCC 58.976 52.381 0.00 0.00 46.67 4.30
3040 3704 2.024414 CCGGACCAATCCATTTTCCTC 58.976 52.381 0.00 0.00 46.67 3.71
3041 3705 1.341976 CCCGGACCAATCCATTTTCCT 60.342 52.381 0.73 0.00 46.67 3.36
3042 3706 1.111277 CCCGGACCAATCCATTTTCC 58.889 55.000 0.73 0.00 46.67 3.13
3043 3707 0.459899 GCCCGGACCAATCCATTTTC 59.540 55.000 0.73 0.00 46.67 2.29
3044 3708 0.975556 GGCCCGGACCAATCCATTTT 60.976 55.000 0.73 0.00 46.67 1.82
3141 3900 2.701780 CCGACCGTCCACCAGAGAG 61.702 68.421 0.00 0.00 0.00 3.20
3143 3902 3.760035 CCCGACCGTCCACCAGAG 61.760 72.222 0.00 0.00 0.00 3.35
3301 4061 2.388232 GCCGCCGAACTCGTTCATT 61.388 57.895 10.10 0.00 39.46 2.57
3319 4079 2.372690 CGACGAGAAGTTGCGGGTG 61.373 63.158 0.00 0.00 0.00 4.61
3322 4082 1.615107 GGTTCGACGAGAAGTTGCGG 61.615 60.000 0.00 0.00 39.95 5.69
3390 4150 2.281484 GCCACTTGCGGTCCTTGA 60.281 61.111 0.00 0.00 0.00 3.02
3491 4251 1.533338 CGTCCGGTTCATCTACTTCCG 60.533 57.143 0.00 0.00 40.72 4.30
3500 4260 4.814294 GCGAGGCGTCCGGTTCAT 62.814 66.667 0.00 0.00 0.00 2.57
3528 4293 7.734924 TTAAGCTAGCAAATCACCATGATAG 57.265 36.000 18.83 0.00 35.76 2.08
3539 4304 4.820284 GCTTCCGATTAAGCTAGCAAAT 57.180 40.909 18.83 15.67 46.74 2.32
3555 4325 1.364721 GCCGAAGAGAAAGAGCTTCC 58.635 55.000 0.00 0.00 37.76 3.46
3556 4326 0.995728 CGCCGAAGAGAAAGAGCTTC 59.004 55.000 0.00 0.00 37.69 3.86
3564 4338 2.959507 TGAATGATCGCCGAAGAGAA 57.040 45.000 0.00 0.00 0.00 2.87
3566 4340 4.375405 CGTAAATGAATGATCGCCGAAGAG 60.375 45.833 0.00 0.00 0.00 2.85
3567 4341 3.489416 CGTAAATGAATGATCGCCGAAGA 59.511 43.478 0.00 0.00 0.00 2.87
3568 4342 3.362986 CCGTAAATGAATGATCGCCGAAG 60.363 47.826 0.00 0.00 0.00 3.79
3569 4343 2.542178 CCGTAAATGAATGATCGCCGAA 59.458 45.455 0.00 0.00 0.00 4.30
3570 4344 2.131972 CCGTAAATGAATGATCGCCGA 58.868 47.619 0.00 0.00 0.00 5.54
3571 4345 2.131972 TCCGTAAATGAATGATCGCCG 58.868 47.619 0.00 0.00 0.00 6.46
3572 4346 2.096218 GCTCCGTAAATGAATGATCGCC 60.096 50.000 0.00 0.00 0.00 5.54
3573 4347 2.802816 AGCTCCGTAAATGAATGATCGC 59.197 45.455 0.00 0.00 0.00 4.58
3574 4348 3.185188 CCAGCTCCGTAAATGAATGATCG 59.815 47.826 0.00 0.00 0.00 3.69
3575 4349 4.380531 TCCAGCTCCGTAAATGAATGATC 58.619 43.478 0.00 0.00 0.00 2.92
3587 4361 3.008049 ACTTTTCTTGTATCCAGCTCCGT 59.992 43.478 0.00 0.00 0.00 4.69
3588 4362 3.372206 CACTTTTCTTGTATCCAGCTCCG 59.628 47.826 0.00 0.00 0.00 4.63
3589 4363 4.393371 GTCACTTTTCTTGTATCCAGCTCC 59.607 45.833 0.00 0.00 0.00 4.70
3590 4364 5.241662 AGTCACTTTTCTTGTATCCAGCTC 58.758 41.667 0.00 0.00 0.00 4.09
3591 4365 5.234466 AGTCACTTTTCTTGTATCCAGCT 57.766 39.130 0.00 0.00 0.00 4.24
3592 4366 5.948992 AAGTCACTTTTCTTGTATCCAGC 57.051 39.130 0.00 0.00 0.00 4.85
3593 4367 7.170998 ACGTAAAGTCACTTTTCTTGTATCCAG 59.829 37.037 8.41 0.00 35.21 3.86
3594 4368 6.987992 ACGTAAAGTCACTTTTCTTGTATCCA 59.012 34.615 8.41 0.00 35.21 3.41
3595 4369 7.417496 ACGTAAAGTCACTTTTCTTGTATCC 57.583 36.000 8.41 0.00 35.21 2.59
3596 4370 7.320560 GCAACGTAAAGTCACTTTTCTTGTATC 59.679 37.037 8.41 0.00 35.21 2.24
3597 4371 7.012044 AGCAACGTAAAGTCACTTTTCTTGTAT 59.988 33.333 8.41 2.07 35.21 2.29
3598 4372 6.314400 AGCAACGTAAAGTCACTTTTCTTGTA 59.686 34.615 8.41 0.00 35.21 2.41
3599 4373 5.123344 AGCAACGTAAAGTCACTTTTCTTGT 59.877 36.000 8.41 0.00 35.21 3.16
3600 4374 5.569413 AGCAACGTAAAGTCACTTTTCTTG 58.431 37.500 8.41 10.41 35.21 3.02
3601 4375 5.813080 AGCAACGTAAAGTCACTTTTCTT 57.187 34.783 8.41 0.00 35.21 2.52
3602 4376 5.353123 TGAAGCAACGTAAAGTCACTTTTCT 59.647 36.000 8.41 0.00 35.21 2.52
3603 4377 5.565695 TGAAGCAACGTAAAGTCACTTTTC 58.434 37.500 8.41 2.08 35.21 2.29
3604 4378 5.554822 TGAAGCAACGTAAAGTCACTTTT 57.445 34.783 8.41 0.00 35.21 2.27
3605 4379 5.554822 TTGAAGCAACGTAAAGTCACTTT 57.445 34.783 8.15 8.15 37.46 2.66
3606 4380 5.751243 ATTGAAGCAACGTAAAGTCACTT 57.249 34.783 0.00 0.00 32.62 3.16
3607 4381 5.295787 TCAATTGAAGCAACGTAAAGTCACT 59.704 36.000 5.45 0.00 0.00 3.41
3608 4382 5.395486 GTCAATTGAAGCAACGTAAAGTCAC 59.605 40.000 10.35 0.00 0.00 3.67
3609 4383 5.065346 TGTCAATTGAAGCAACGTAAAGTCA 59.935 36.000 10.35 0.00 0.00 3.41
3610 4384 5.507077 TGTCAATTGAAGCAACGTAAAGTC 58.493 37.500 10.35 0.00 0.00 3.01
3611 4385 5.493133 TGTCAATTGAAGCAACGTAAAGT 57.507 34.783 10.35 0.00 0.00 2.66
3612 4386 4.911610 CCTGTCAATTGAAGCAACGTAAAG 59.088 41.667 10.35 0.00 0.00 1.85
3613 4387 4.576873 TCCTGTCAATTGAAGCAACGTAAA 59.423 37.500 10.35 0.00 0.00 2.01
3614 4388 4.024387 GTCCTGTCAATTGAAGCAACGTAA 60.024 41.667 10.35 0.00 0.00 3.18
3615 4389 3.496884 GTCCTGTCAATTGAAGCAACGTA 59.503 43.478 10.35 0.00 0.00 3.57
3616 4390 2.290641 GTCCTGTCAATTGAAGCAACGT 59.709 45.455 10.35 0.00 0.00 3.99
3617 4391 2.350772 GGTCCTGTCAATTGAAGCAACG 60.351 50.000 10.35 0.00 0.00 4.10
3618 4392 2.622942 TGGTCCTGTCAATTGAAGCAAC 59.377 45.455 10.35 6.72 0.00 4.17
3619 4393 2.622942 GTGGTCCTGTCAATTGAAGCAA 59.377 45.455 10.35 0.00 0.00 3.91
3620 4394 2.229792 GTGGTCCTGTCAATTGAAGCA 58.770 47.619 10.35 7.67 0.00 3.91
3621 4395 1.197721 CGTGGTCCTGTCAATTGAAGC 59.802 52.381 10.35 4.91 0.00 3.86
3622 4396 2.494059 ACGTGGTCCTGTCAATTGAAG 58.506 47.619 10.35 9.75 0.00 3.02
3623 4397 2.631160 ACGTGGTCCTGTCAATTGAA 57.369 45.000 10.35 0.06 0.00 2.69
3624 4398 2.608506 CGTACGTGGTCCTGTCAATTGA 60.609 50.000 7.22 3.38 0.00 2.57
3625 4399 1.724623 CGTACGTGGTCCTGTCAATTG 59.275 52.381 7.22 0.00 0.00 2.32
3633 4407 0.744874 CATGATCCGTACGTGGTCCT 59.255 55.000 15.21 2.03 0.00 3.85
3741 4522 4.759782 ACCGGACAAAATACTGATCAGAG 58.240 43.478 29.27 12.71 0.00 3.35
3757 4538 0.463116 AACAACACCACTGACCGGAC 60.463 55.000 9.46 1.07 0.00 4.79
3762 4543 0.582005 GAGCGAACAACACCACTGAC 59.418 55.000 0.00 0.00 0.00 3.51
3833 4614 2.283388 ACGTCACCGCCCTAGGAA 60.283 61.111 11.48 0.00 37.70 3.36
3840 4621 2.022129 CTTCTGTCACGTCACCGCC 61.022 63.158 0.00 0.00 37.70 6.13
3857 4638 6.006449 ACAGTAGCATGAGAAAAATTGTCCT 58.994 36.000 0.00 0.00 0.00 3.85
3878 4659 0.968901 TACCAGCCTACGGGTCACAG 60.969 60.000 0.00 0.00 40.81 3.66
3879 4660 0.968901 CTACCAGCCTACGGGTCACA 60.969 60.000 0.00 0.00 40.81 3.58
3899 4680 1.447317 CTTTTCGTGGTGGCTGCAGT 61.447 55.000 16.64 0.00 0.00 4.40
3922 4703 1.674651 GGACGAAAGCCAGTTCCCC 60.675 63.158 0.00 0.00 0.00 4.81
3923 4704 1.674651 GGGACGAAAGCCAGTTCCC 60.675 63.158 0.00 0.00 29.65 3.97
3978 4760 5.182001 AGTCCATTTTGATCGTTGAGAAAGG 59.818 40.000 0.00 0.00 0.00 3.11
3993 4775 2.645797 TCCCCGAGGTTTAGTCCATTTT 59.354 45.455 0.00 0.00 0.00 1.82
4087 4874 2.877360 TTACATGCCGGCGAGACGAC 62.877 60.000 23.90 0.00 35.47 4.34
4088 4875 2.215465 TTTACATGCCGGCGAGACGA 62.215 55.000 23.90 2.33 35.47 4.20
4089 4876 1.355796 TTTTACATGCCGGCGAGACG 61.356 55.000 23.90 10.40 0.00 4.18
4090 4877 1.014352 ATTTTACATGCCGGCGAGAC 58.986 50.000 23.90 0.00 0.00 3.36
4091 4878 1.013596 CATTTTACATGCCGGCGAGA 58.986 50.000 23.90 4.21 0.00 4.04
4092 4879 0.732571 ACATTTTACATGCCGGCGAG 59.267 50.000 23.90 19.27 0.00 5.03
4093 4880 1.169577 AACATTTTACATGCCGGCGA 58.830 45.000 23.90 11.80 0.00 5.54
4094 4881 1.917303 GAAACATTTTACATGCCGGCG 59.083 47.619 23.90 11.34 0.00 6.46
4095 4882 2.267426 GGAAACATTTTACATGCCGGC 58.733 47.619 22.73 22.73 0.00 6.13
4096 4883 3.584406 TGGAAACATTTTACATGCCGG 57.416 42.857 0.00 0.00 33.40 6.13
4097 4884 3.367630 GCTTGGAAACATTTTACATGCCG 59.632 43.478 9.54 0.00 42.32 5.69
4098 4885 4.314121 TGCTTGGAAACATTTTACATGCC 58.686 39.130 15.43 3.28 42.32 4.40
4099 4886 6.369615 AGAATGCTTGGAAACATTTTACATGC 59.630 34.615 12.57 12.57 42.32 4.06
4100 4887 7.735500 CAGAATGCTTGGAAACATTTTACATG 58.264 34.615 0.00 0.00 42.32 3.21
4101 4888 7.894376 CAGAATGCTTGGAAACATTTTACAT 57.106 32.000 0.00 0.00 42.32 2.29
4119 4906 1.243342 TGGAAACAGCGGGCAGAATG 61.243 55.000 0.00 0.00 35.39 2.67
4121 4908 2.513395 TGGAAACAGCGGGCAGAA 59.487 55.556 0.00 0.00 35.01 3.02
4160 4947 3.612860 CACGCAGAGACTTTACGCTTATT 59.387 43.478 0.00 0.00 0.00 1.40
4161 4948 3.179830 CACGCAGAGACTTTACGCTTAT 58.820 45.455 0.00 0.00 0.00 1.73
4163 4950 1.269621 ACACGCAGAGACTTTACGCTT 60.270 47.619 0.00 0.00 0.00 4.68
4164 4951 0.314302 ACACGCAGAGACTTTACGCT 59.686 50.000 0.00 0.00 0.00 5.07
4165 4952 1.124477 GAACACGCAGAGACTTTACGC 59.876 52.381 0.00 0.00 0.00 4.42
4166 4953 2.405357 CAGAACACGCAGAGACTTTACG 59.595 50.000 0.00 0.00 0.00 3.18
4167 4954 3.639538 TCAGAACACGCAGAGACTTTAC 58.360 45.455 0.00 0.00 0.00 2.01
4168 4955 4.202121 ACTTCAGAACACGCAGAGACTTTA 60.202 41.667 0.00 0.00 0.00 1.85
4169 4956 2.890808 TCAGAACACGCAGAGACTTT 57.109 45.000 0.00 0.00 0.00 2.66
4170 4957 2.101582 ACTTCAGAACACGCAGAGACTT 59.898 45.455 0.00 0.00 0.00 3.01
4171 4958 1.683917 ACTTCAGAACACGCAGAGACT 59.316 47.619 0.00 0.00 0.00 3.24
4172 4959 2.055100 GACTTCAGAACACGCAGAGAC 58.945 52.381 0.00 0.00 0.00 3.36
4173 4960 1.957177 AGACTTCAGAACACGCAGAGA 59.043 47.619 0.00 0.00 0.00 3.10
4174 4961 2.057316 CAGACTTCAGAACACGCAGAG 58.943 52.381 0.00 0.00 0.00 3.35
4176 4963 2.140065 TCAGACTTCAGAACACGCAG 57.860 50.000 0.00 0.00 0.00 5.18
4177 4964 2.201732 GTTCAGACTTCAGAACACGCA 58.798 47.619 9.06 0.00 40.63 5.24
4178 4965 2.201732 TGTTCAGACTTCAGAACACGC 58.798 47.619 11.86 0.00 44.00 5.34
4179 4966 4.747108 AGATTGTTCAGACTTCAGAACACG 59.253 41.667 14.68 0.00 46.93 4.49
4180 4967 7.897575 ATAGATTGTTCAGACTTCAGAACAC 57.102 36.000 14.68 6.80 46.93 3.32
4181 4968 8.908786 AAATAGATTGTTCAGACTTCAGAACA 57.091 30.769 11.86 11.86 46.08 3.18
4221 5008 6.432403 AGATAAGATTCTGGATTGGAGGAC 57.568 41.667 0.00 0.00 0.00 3.85
4246 5033 7.960195 CGGGTTGTTGAAAAATAAAATAATGCC 59.040 33.333 0.00 0.00 0.00 4.40
4352 5140 3.014623 CTCATGGAGCATCTCTTTTGCA 58.985 45.455 0.00 0.00 42.62 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.