Multiple sequence alignment - TraesCS3D01G254100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G254100 chr3D 100.000 3165 0 0 1 3165 355703842 355707006 0.000000e+00 5845.0
1 TraesCS3D01G254100 chr3D 75.714 350 61 18 1362 1705 355705116 355705447 1.520000e-33 154.0
2 TraesCS3D01G254100 chr3D 75.714 350 61 18 1275 1606 355705203 355705546 1.520000e-33 154.0
3 TraesCS3D01G254100 chr3A 96.156 2055 65 11 1091 3134 474677252 474679303 0.000000e+00 3345.0
4 TraesCS3D01G254100 chr3A 92.130 432 20 3 661 1092 474676783 474677200 5.840000e-167 597.0
5 TraesCS3D01G254100 chr3A 89.677 155 14 1 1 155 474506103 474506255 2.490000e-46 196.0
6 TraesCS3D01G254100 chr3A 76.068 351 58 21 1362 1705 474677436 474677767 3.270000e-35 159.0
7 TraesCS3D01G254100 chr3A 75.499 351 60 20 1275 1606 474677523 474677866 7.070000e-32 148.0
8 TraesCS3D01G254100 chr3A 92.308 78 5 1 604 680 474670772 474670849 3.340000e-20 110.0
9 TraesCS3D01G254100 chr3B 93.544 1487 56 26 743 2194 456673501 456674982 0.000000e+00 2178.0
10 TraesCS3D01G254100 chr3B 96.821 755 18 2 2413 3161 456675154 456675908 0.000000e+00 1256.0
11 TraesCS3D01G254100 chr3B 76.647 334 52 20 1362 1688 456674051 456674365 9.090000e-36 161.0
12 TraesCS3D01G254100 chr3B 75.214 351 61 21 1275 1606 456674138 456674481 3.290000e-30 143.0
13 TraesCS3D01G254100 chr2D 91.828 673 52 3 2466 3135 60765030 60765702 0.000000e+00 935.0
14 TraesCS3D01G254100 chr2D 94.697 264 12 2 274 535 357895094 357894831 2.940000e-110 409.0
15 TraesCS3D01G254100 chr2D 92.045 264 18 3 272 533 516365133 516365395 4.990000e-98 368.0
16 TraesCS3D01G254100 chr2A 91.562 640 51 1 2466 3102 61295311 61295950 0.000000e+00 880.0
17 TraesCS3D01G254100 chr2B 87.761 670 79 2 2466 3132 95218971 95219640 0.000000e+00 780.0
18 TraesCS3D01G254100 chr2B 92.537 268 17 3 273 538 401669214 401668948 6.410000e-102 381.0
19 TraesCS3D01G254100 chr4A 93.309 269 16 2 272 538 614570389 614570657 2.290000e-106 396.0
20 TraesCS3D01G254100 chr4A 91.513 271 17 6 271 537 75352897 75352629 4.990000e-98 368.0
21 TraesCS3D01G254100 chr7D 93.585 265 14 3 274 536 592727667 592727404 2.960000e-105 392.0
22 TraesCS3D01G254100 chr5D 93.870 261 13 3 273 531 42063624 42063365 1.060000e-104 390.0
23 TraesCS3D01G254100 chr5A 93.536 263 14 3 273 533 597832029 597832290 3.830000e-104 388.0
24 TraesCS3D01G254100 chr6B 92.937 269 12 6 267 533 458507727 458507990 4.950000e-103 385.0
25 TraesCS3D01G254100 chr1B 91.379 58 5 0 1648 1705 614443065 614443122 2.620000e-11 80.5
26 TraesCS3D01G254100 chr1B 80.899 89 17 0 1617 1705 614292732 614292820 1.570000e-08 71.3
27 TraesCS3D01G254100 chr1B 87.931 58 7 0 1648 1705 614278652 614278709 5.660000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G254100 chr3D 355703842 355707006 3164 False 2051.00 5845 83.809333 1 3165 3 chr3D.!!$F1 3164
1 TraesCS3D01G254100 chr3A 474676783 474679303 2520 False 1062.25 3345 84.963250 661 3134 4 chr3A.!!$F3 2473
2 TraesCS3D01G254100 chr3B 456673501 456675908 2407 False 934.50 2178 85.556500 743 3161 4 chr3B.!!$F1 2418
3 TraesCS3D01G254100 chr2D 60765030 60765702 672 False 935.00 935 91.828000 2466 3135 1 chr2D.!!$F1 669
4 TraesCS3D01G254100 chr2A 61295311 61295950 639 False 880.00 880 91.562000 2466 3102 1 chr2A.!!$F1 636
5 TraesCS3D01G254100 chr2B 95218971 95219640 669 False 780.00 780 87.761000 2466 3132 1 chr2B.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.106769 TTGTGGTGAAAGCTGGCTGA 60.107 50.0 0.0 0.0 33.76 4.26 F
611 612 0.107831 ACTGCAAAGGCTGGTACGAA 59.892 50.0 0.0 0.0 42.66 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1270 0.172352 CACGCACCAAAACCACAGTT 59.828 50.0 0.0 0.0 38.03 3.16 R
2378 2473 0.248054 CGTGCGTTTGTTGCTGTCTT 60.248 50.0 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.307934 TTTTTGTGGTGAAAGCTGGC 57.692 45.000 0.00 0.00 33.76 4.85
76 77 1.484038 TTTTGTGGTGAAAGCTGGCT 58.516 45.000 0.00 0.00 33.76 4.75
77 78 0.746063 TTTGTGGTGAAAGCTGGCTG 59.254 50.000 0.00 0.00 33.76 4.85
78 79 0.106769 TTGTGGTGAAAGCTGGCTGA 60.107 50.000 0.00 0.00 33.76 4.26
79 80 0.535780 TGTGGTGAAAGCTGGCTGAG 60.536 55.000 0.00 0.00 33.76 3.35
80 81 0.536006 GTGGTGAAAGCTGGCTGAGT 60.536 55.000 0.00 0.00 33.76 3.41
81 82 0.535780 TGGTGAAAGCTGGCTGAGTG 60.536 55.000 0.00 0.00 33.76 3.51
82 83 1.578423 GTGAAAGCTGGCTGAGTGC 59.422 57.895 0.00 0.00 41.94 4.40
83 84 1.962822 TGAAAGCTGGCTGAGTGCG 60.963 57.895 0.00 0.00 44.05 5.34
84 85 1.963338 GAAAGCTGGCTGAGTGCGT 60.963 57.895 0.00 0.00 44.05 5.24
85 86 2.180131 GAAAGCTGGCTGAGTGCGTG 62.180 60.000 0.00 0.00 44.05 5.34
86 87 2.665008 AAAGCTGGCTGAGTGCGTGA 62.665 55.000 0.00 0.00 44.05 4.35
87 88 2.435586 GCTGGCTGAGTGCGTGAT 60.436 61.111 0.00 0.00 44.05 3.06
88 89 2.747822 GCTGGCTGAGTGCGTGATG 61.748 63.158 0.00 0.00 44.05 3.07
89 90 1.079612 CTGGCTGAGTGCGTGATGA 60.080 57.895 0.00 0.00 44.05 2.92
90 91 1.357258 CTGGCTGAGTGCGTGATGAC 61.357 60.000 0.00 0.00 44.05 3.06
91 92 2.103042 GGCTGAGTGCGTGATGACC 61.103 63.158 0.00 0.00 44.05 4.02
92 93 2.447887 GCTGAGTGCGTGATGACCG 61.448 63.158 0.00 0.00 0.00 4.79
93 94 1.080501 CTGAGTGCGTGATGACCGT 60.081 57.895 0.00 0.00 0.00 4.83
94 95 1.347097 CTGAGTGCGTGATGACCGTG 61.347 60.000 0.00 0.00 0.00 4.94
95 96 2.730672 GAGTGCGTGATGACCGTGC 61.731 63.158 0.00 0.00 0.00 5.34
96 97 3.788766 GTGCGTGATGACCGTGCC 61.789 66.667 0.00 0.00 0.00 5.01
97 98 4.306967 TGCGTGATGACCGTGCCA 62.307 61.111 0.00 0.00 0.00 4.92
98 99 3.047280 GCGTGATGACCGTGCCAA 61.047 61.111 0.00 0.00 0.00 4.52
99 100 2.612567 GCGTGATGACCGTGCCAAA 61.613 57.895 0.00 0.00 0.00 3.28
100 101 1.922135 GCGTGATGACCGTGCCAAAT 61.922 55.000 0.00 0.00 0.00 2.32
101 102 0.521291 CGTGATGACCGTGCCAAATT 59.479 50.000 0.00 0.00 0.00 1.82
102 103 1.068610 CGTGATGACCGTGCCAAATTT 60.069 47.619 0.00 0.00 0.00 1.82
103 104 2.606795 CGTGATGACCGTGCCAAATTTT 60.607 45.455 0.00 0.00 0.00 1.82
104 105 3.365465 CGTGATGACCGTGCCAAATTTTA 60.365 43.478 0.00 0.00 0.00 1.52
105 106 4.165779 GTGATGACCGTGCCAAATTTTAG 58.834 43.478 0.00 0.00 0.00 1.85
106 107 4.075682 TGATGACCGTGCCAAATTTTAGA 58.924 39.130 0.00 0.00 0.00 2.10
107 108 4.155826 TGATGACCGTGCCAAATTTTAGAG 59.844 41.667 0.00 0.00 0.00 2.43
108 109 2.227865 TGACCGTGCCAAATTTTAGAGC 59.772 45.455 0.00 0.00 0.00 4.09
109 110 2.227865 GACCGTGCCAAATTTTAGAGCA 59.772 45.455 0.00 0.00 0.00 4.26
110 111 2.825532 ACCGTGCCAAATTTTAGAGCAT 59.174 40.909 5.54 0.00 35.62 3.79
111 112 3.258123 ACCGTGCCAAATTTTAGAGCATT 59.742 39.130 5.54 0.00 35.62 3.56
112 113 4.244862 CCGTGCCAAATTTTAGAGCATTT 58.755 39.130 5.54 0.00 35.62 2.32
113 114 4.091800 CCGTGCCAAATTTTAGAGCATTTG 59.908 41.667 5.54 0.00 39.25 2.32
121 122 8.537049 CAAATTTTAGAGCATTTGGATGTTCA 57.463 30.769 6.12 0.00 43.56 3.18
122 123 8.991026 CAAATTTTAGAGCATTTGGATGTTCAA 58.009 29.630 6.12 0.00 43.56 2.69
123 124 8.767478 AATTTTAGAGCATTTGGATGTTCAAG 57.233 30.769 6.12 0.00 43.56 3.02
124 125 6.899393 TTTAGAGCATTTGGATGTTCAAGT 57.101 33.333 6.12 0.00 43.56 3.16
125 126 7.994425 TTTAGAGCATTTGGATGTTCAAGTA 57.006 32.000 6.12 0.00 43.56 2.24
126 127 7.615582 TTAGAGCATTTGGATGTTCAAGTAG 57.384 36.000 6.12 0.00 43.56 2.57
127 128 4.946157 AGAGCATTTGGATGTTCAAGTAGG 59.054 41.667 6.12 0.00 43.56 3.18
128 129 4.666512 AGCATTTGGATGTTCAAGTAGGT 58.333 39.130 0.00 0.00 35.63 3.08
129 130 4.702131 AGCATTTGGATGTTCAAGTAGGTC 59.298 41.667 0.00 0.00 35.63 3.85
130 131 4.702131 GCATTTGGATGTTCAAGTAGGTCT 59.298 41.667 0.00 0.00 35.63 3.85
131 132 5.183904 GCATTTGGATGTTCAAGTAGGTCTT 59.816 40.000 0.00 0.00 35.63 3.01
132 133 6.374333 GCATTTGGATGTTCAAGTAGGTCTTA 59.626 38.462 0.00 0.00 35.63 2.10
133 134 7.414540 GCATTTGGATGTTCAAGTAGGTCTTAG 60.415 40.741 0.00 0.00 35.63 2.18
134 135 5.086104 TGGATGTTCAAGTAGGTCTTAGC 57.914 43.478 0.00 0.00 34.66 3.09
135 136 4.113354 GGATGTTCAAGTAGGTCTTAGCG 58.887 47.826 0.00 0.00 34.66 4.26
136 137 4.142227 GGATGTTCAAGTAGGTCTTAGCGA 60.142 45.833 0.00 0.00 34.66 4.93
137 138 4.859304 TGTTCAAGTAGGTCTTAGCGAA 57.141 40.909 0.00 0.00 34.66 4.70
138 139 5.204409 TGTTCAAGTAGGTCTTAGCGAAA 57.796 39.130 0.00 0.00 34.66 3.46
139 140 5.603596 TGTTCAAGTAGGTCTTAGCGAAAA 58.396 37.500 0.00 0.00 34.66 2.29
140 141 6.050432 TGTTCAAGTAGGTCTTAGCGAAAAA 58.950 36.000 0.00 0.00 34.66 1.94
141 142 6.202188 TGTTCAAGTAGGTCTTAGCGAAAAAG 59.798 38.462 0.00 0.00 34.66 2.27
142 143 6.092955 TCAAGTAGGTCTTAGCGAAAAAGA 57.907 37.500 0.00 0.00 34.66 2.52
143 144 6.157211 TCAAGTAGGTCTTAGCGAAAAAGAG 58.843 40.000 0.00 0.00 33.75 2.85
144 145 5.979288 AGTAGGTCTTAGCGAAAAAGAGA 57.021 39.130 0.00 0.00 33.75 3.10
145 146 6.342338 AGTAGGTCTTAGCGAAAAAGAGAA 57.658 37.500 0.00 0.00 33.75 2.87
146 147 6.756221 AGTAGGTCTTAGCGAAAAAGAGAAA 58.244 36.000 0.00 0.00 33.75 2.52
147 148 7.387643 AGTAGGTCTTAGCGAAAAAGAGAAAT 58.612 34.615 0.00 0.00 33.75 2.17
148 149 7.878644 AGTAGGTCTTAGCGAAAAAGAGAAATT 59.121 33.333 0.00 0.00 33.75 1.82
149 150 7.511959 AGGTCTTAGCGAAAAAGAGAAATTT 57.488 32.000 0.00 0.00 33.75 1.82
150 151 8.617290 AGGTCTTAGCGAAAAAGAGAAATTTA 57.383 30.769 0.00 0.00 33.75 1.40
151 152 9.063615 AGGTCTTAGCGAAAAAGAGAAATTTAA 57.936 29.630 0.00 0.00 33.75 1.52
152 153 9.331106 GGTCTTAGCGAAAAAGAGAAATTTAAG 57.669 33.333 0.00 0.00 33.75 1.85
153 154 9.331106 GTCTTAGCGAAAAAGAGAAATTTAAGG 57.669 33.333 0.00 0.00 33.75 2.69
154 155 9.063615 TCTTAGCGAAAAAGAGAAATTTAAGGT 57.936 29.630 0.00 0.00 0.00 3.50
155 156 9.331106 CTTAGCGAAAAAGAGAAATTTAAGGTC 57.669 33.333 0.00 0.00 0.00 3.85
156 157 7.511959 AGCGAAAAAGAGAAATTTAAGGTCT 57.488 32.000 0.00 0.00 0.00 3.85
157 158 8.617290 AGCGAAAAAGAGAAATTTAAGGTCTA 57.383 30.769 0.00 0.00 0.00 2.59
158 159 9.063615 AGCGAAAAAGAGAAATTTAAGGTCTAA 57.936 29.630 0.00 0.00 0.00 2.10
159 160 9.841880 GCGAAAAAGAGAAATTTAAGGTCTAAT 57.158 29.630 0.00 0.00 0.00 1.73
170 171 8.507524 AATTTAAGGTCTAATTGAGTGTAGGC 57.492 34.615 0.00 0.00 0.00 3.93
171 172 6.869206 TTAAGGTCTAATTGAGTGTAGGCT 57.131 37.500 0.00 0.00 0.00 4.58
172 173 5.763876 AAGGTCTAATTGAGTGTAGGCTT 57.236 39.130 0.00 0.00 0.00 4.35
173 174 5.346181 AGGTCTAATTGAGTGTAGGCTTC 57.654 43.478 0.00 0.00 0.00 3.86
174 175 5.026790 AGGTCTAATTGAGTGTAGGCTTCT 58.973 41.667 0.00 0.00 0.00 2.85
175 176 5.485708 AGGTCTAATTGAGTGTAGGCTTCTT 59.514 40.000 0.00 0.00 0.00 2.52
176 177 6.013293 AGGTCTAATTGAGTGTAGGCTTCTTT 60.013 38.462 0.00 0.00 0.00 2.52
177 178 7.180408 AGGTCTAATTGAGTGTAGGCTTCTTTA 59.820 37.037 0.00 0.00 0.00 1.85
178 179 7.822822 GGTCTAATTGAGTGTAGGCTTCTTTAA 59.177 37.037 0.00 0.00 0.00 1.52
179 180 9.216117 GTCTAATTGAGTGTAGGCTTCTTTAAA 57.784 33.333 0.00 0.00 0.00 1.52
180 181 9.787435 TCTAATTGAGTGTAGGCTTCTTTAAAA 57.213 29.630 0.00 0.00 0.00 1.52
183 184 9.696917 AATTGAGTGTAGGCTTCTTTAAAAATG 57.303 29.630 0.00 0.00 0.00 2.32
184 185 7.817418 TGAGTGTAGGCTTCTTTAAAAATGT 57.183 32.000 0.00 0.00 0.00 2.71
185 186 7.648142 TGAGTGTAGGCTTCTTTAAAAATGTG 58.352 34.615 0.00 0.00 0.00 3.21
186 187 7.500892 TGAGTGTAGGCTTCTTTAAAAATGTGA 59.499 33.333 0.00 0.00 0.00 3.58
187 188 8.232913 AGTGTAGGCTTCTTTAAAAATGTGAA 57.767 30.769 0.00 0.00 0.00 3.18
188 189 8.860088 AGTGTAGGCTTCTTTAAAAATGTGAAT 58.140 29.630 0.00 0.00 0.00 2.57
189 190 9.476202 GTGTAGGCTTCTTTAAAAATGTGAATT 57.524 29.630 0.00 0.00 0.00 2.17
190 191 9.474920 TGTAGGCTTCTTTAAAAATGTGAATTG 57.525 29.630 0.00 0.00 0.00 2.32
191 192 7.967890 AGGCTTCTTTAAAAATGTGAATTGG 57.032 32.000 0.00 0.00 0.00 3.16
192 193 7.508687 AGGCTTCTTTAAAAATGTGAATTGGT 58.491 30.769 0.00 0.00 0.00 3.67
193 194 7.992608 AGGCTTCTTTAAAAATGTGAATTGGTT 59.007 29.630 0.00 0.00 0.00 3.67
194 195 8.282592 GGCTTCTTTAAAAATGTGAATTGGTTC 58.717 33.333 0.00 0.00 34.85 3.62
195 196 8.282592 GCTTCTTTAAAAATGTGAATTGGTTCC 58.717 33.333 0.00 0.00 33.26 3.62
196 197 9.546428 CTTCTTTAAAAATGTGAATTGGTTCCT 57.454 29.630 0.00 0.00 33.26 3.36
197 198 9.541143 TTCTTTAAAAATGTGAATTGGTTCCTC 57.459 29.630 0.00 0.00 33.26 3.71
198 199 8.147704 TCTTTAAAAATGTGAATTGGTTCCTCC 58.852 33.333 0.00 0.00 33.26 4.30
199 200 7.610580 TTAAAAATGTGAATTGGTTCCTCCT 57.389 32.000 0.00 0.00 37.07 3.69
200 201 8.713708 TTAAAAATGTGAATTGGTTCCTCCTA 57.286 30.769 0.00 0.00 37.07 2.94
201 202 7.797121 AAAAATGTGAATTGGTTCCTCCTAT 57.203 32.000 0.00 0.00 37.07 2.57
202 203 7.410120 AAAATGTGAATTGGTTCCTCCTATC 57.590 36.000 0.00 0.00 37.07 2.08
203 204 4.503714 TGTGAATTGGTTCCTCCTATCC 57.496 45.455 0.00 0.00 37.07 2.59
204 205 4.111577 TGTGAATTGGTTCCTCCTATCCT 58.888 43.478 0.00 0.00 37.07 3.24
205 206 5.285401 TGTGAATTGGTTCCTCCTATCCTA 58.715 41.667 0.00 0.00 37.07 2.94
206 207 5.911178 TGTGAATTGGTTCCTCCTATCCTAT 59.089 40.000 0.00 0.00 37.07 2.57
207 208 7.079700 TGTGAATTGGTTCCTCCTATCCTATA 58.920 38.462 0.00 0.00 37.07 1.31
208 209 7.739444 TGTGAATTGGTTCCTCCTATCCTATAT 59.261 37.037 0.00 0.00 37.07 0.86
209 210 9.268282 GTGAATTGGTTCCTCCTATCCTATATA 57.732 37.037 0.00 0.00 37.07 0.86
210 211 9.494055 TGAATTGGTTCCTCCTATCCTATATAG 57.506 37.037 2.46 2.46 37.07 1.31
211 212 9.716556 GAATTGGTTCCTCCTATCCTATATAGA 57.283 37.037 11.53 0.00 37.07 1.98
281 282 9.892130 TTCTCTTTGAAAATTCTATACTCCCTC 57.108 33.333 0.00 0.00 0.00 4.30
282 283 8.487028 TCTCTTTGAAAATTCTATACTCCCTCC 58.513 37.037 0.00 0.00 0.00 4.30
283 284 7.272978 TCTTTGAAAATTCTATACTCCCTCCG 58.727 38.462 0.00 0.00 0.00 4.63
284 285 6.555463 TTGAAAATTCTATACTCCCTCCGT 57.445 37.500 0.00 0.00 0.00 4.69
285 286 6.555463 TGAAAATTCTATACTCCCTCCGTT 57.445 37.500 0.00 0.00 0.00 4.44
286 287 6.954232 TGAAAATTCTATACTCCCTCCGTTT 58.046 36.000 0.00 0.00 0.00 3.60
287 288 7.399634 TGAAAATTCTATACTCCCTCCGTTTT 58.600 34.615 0.00 0.00 0.00 2.43
288 289 7.886446 TGAAAATTCTATACTCCCTCCGTTTTT 59.114 33.333 0.00 0.00 0.00 1.94
289 290 9.387257 GAAAATTCTATACTCCCTCCGTTTTTA 57.613 33.333 0.00 0.00 0.00 1.52
290 291 9.916360 AAAATTCTATACTCCCTCCGTTTTTAT 57.084 29.630 0.00 0.00 0.00 1.40
291 292 9.916360 AAATTCTATACTCCCTCCGTTTTTATT 57.084 29.630 0.00 0.00 0.00 1.40
292 293 9.916360 AATTCTATACTCCCTCCGTTTTTATTT 57.084 29.630 0.00 0.00 0.00 1.40
295 296 9.205513 TCTATACTCCCTCCGTTTTTATTTAGT 57.794 33.333 0.00 0.00 0.00 2.24
296 297 9.473640 CTATACTCCCTCCGTTTTTATTTAGTC 57.526 37.037 0.00 0.00 0.00 2.59
297 298 5.494724 ACTCCCTCCGTTTTTATTTAGTCC 58.505 41.667 0.00 0.00 0.00 3.85
298 299 4.506758 TCCCTCCGTTTTTATTTAGTCCG 58.493 43.478 0.00 0.00 0.00 4.79
299 300 3.064408 CCCTCCGTTTTTATTTAGTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
300 301 3.685756 CCTCCGTTTTTATTTAGTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
301 302 4.334481 CCTCCGTTTTTATTTAGTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
302 303 5.524646 CCTCCGTTTTTATTTAGTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
303 304 6.204108 CCTCCGTTTTTATTTAGTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
304 305 7.255001 CCTCCGTTTTTATTTAGTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
305 306 8.659925 TCCGTTTTTATTTAGTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
306 307 8.767085 TCCGTTTTTATTTAGTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
307 308 8.553696 CCGTTTTTATTTAGTCCGCATATTAGT 58.446 33.333 0.00 0.00 0.00 2.24
308 309 9.925268 CGTTTTTATTTAGTCCGCATATTAGTT 57.075 29.630 0.00 0.00 0.00 2.24
315 316 8.725405 TTTAGTCCGCATATTAGTTTTGATCA 57.275 30.769 0.00 0.00 0.00 2.92
316 317 8.725405 TTAGTCCGCATATTAGTTTTGATCAA 57.275 30.769 3.38 3.38 0.00 2.57
317 318 7.624360 AGTCCGCATATTAGTTTTGATCAAA 57.376 32.000 16.91 16.91 0.00 2.69
318 319 7.697691 AGTCCGCATATTAGTTTTGATCAAAG 58.302 34.615 19.64 7.99 0.00 2.77
319 320 7.336931 AGTCCGCATATTAGTTTTGATCAAAGT 59.663 33.333 19.64 14.00 32.41 2.66
320 321 7.640240 GTCCGCATATTAGTTTTGATCAAAGTC 59.360 37.037 19.64 16.31 30.16 3.01
321 322 7.335673 TCCGCATATTAGTTTTGATCAAAGTCA 59.664 33.333 19.64 4.05 30.16 3.41
322 323 7.967854 CCGCATATTAGTTTTGATCAAAGTCAA 59.032 33.333 19.64 14.55 36.38 3.18
323 324 9.003112 CGCATATTAGTTTTGATCAAAGTCAAG 57.997 33.333 19.64 8.64 39.13 3.02
324 325 8.801913 GCATATTAGTTTTGATCAAAGTCAAGC 58.198 33.333 19.64 13.61 39.13 4.01
341 342 7.817418 AGTCAAGCTTTATAAACTTTGACCA 57.183 32.000 27.04 8.39 0.00 4.02
342 343 8.232913 AGTCAAGCTTTATAAACTTTGACCAA 57.767 30.769 27.04 8.16 0.00 3.67
343 344 8.352942 AGTCAAGCTTTATAAACTTTGACCAAG 58.647 33.333 27.04 11.78 38.64 3.61
426 427 9.710900 ATTGAATGTACTTTCGCATCATATAGA 57.289 29.630 14.67 0.00 0.00 1.98
427 428 9.710900 TTGAATGTACTTTCGCATCATATAGAT 57.289 29.630 14.67 0.00 37.48 1.98
428 429 9.710900 TGAATGTACTTTCGCATCATATAGATT 57.289 29.630 14.67 0.00 33.72 2.40
431 432 8.887036 TGTACTTTCGCATCATATAGATTTGT 57.113 30.769 0.00 0.00 33.72 2.83
432 433 9.325198 TGTACTTTCGCATCATATAGATTTGTT 57.675 29.630 0.00 0.00 33.72 2.83
435 436 9.325198 ACTTTCGCATCATATAGATTTGTTACA 57.675 29.630 0.00 0.00 33.72 2.41
436 437 9.803130 CTTTCGCATCATATAGATTTGTTACAG 57.197 33.333 0.00 0.00 33.72 2.74
437 438 8.887036 TTCGCATCATATAGATTTGTTACAGT 57.113 30.769 0.00 0.00 33.72 3.55
438 439 9.974980 TTCGCATCATATAGATTTGTTACAGTA 57.025 29.630 0.00 0.00 33.72 2.74
439 440 9.974980 TCGCATCATATAGATTTGTTACAGTAA 57.025 29.630 0.00 0.00 33.72 2.24
481 482 9.733556 TTCTATAAGCTTGGTCAAACTTTATGA 57.266 29.630 9.86 0.36 0.00 2.15
482 483 9.733556 TCTATAAGCTTGGTCAAACTTTATGAA 57.266 29.630 9.86 0.00 0.00 2.57
483 484 9.994432 CTATAAGCTTGGTCAAACTTTATGAAG 57.006 33.333 9.86 0.00 38.87 3.02
530 531 8.904099 ATACAGAATAAATAAAACGGAGGGAG 57.096 34.615 0.00 0.00 0.00 4.30
531 532 6.718294 ACAGAATAAATAAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
532 533 7.854337 ACAGAATAAATAAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
533 534 8.491958 ACAGAATAAATAAAACGGAGGGAGTAT 58.508 33.333 0.00 0.00 0.00 2.12
534 535 9.338622 CAGAATAAATAAAACGGAGGGAGTATT 57.661 33.333 0.00 0.00 0.00 1.89
540 541 9.862149 AAATAAAACGGAGGGAGTATTATGAAT 57.138 29.630 0.00 0.00 0.00 2.57
541 542 9.862149 AATAAAACGGAGGGAGTATTATGAATT 57.138 29.630 0.00 0.00 0.00 2.17
542 543 9.862149 ATAAAACGGAGGGAGTATTATGAATTT 57.138 29.630 0.00 0.00 0.00 1.82
543 544 7.803279 AAACGGAGGGAGTATTATGAATTTC 57.197 36.000 0.00 0.00 0.00 2.17
544 545 6.749036 ACGGAGGGAGTATTATGAATTTCT 57.251 37.500 0.00 0.00 0.00 2.52
545 546 7.850935 ACGGAGGGAGTATTATGAATTTCTA 57.149 36.000 0.00 0.00 0.00 2.10
546 547 7.668492 ACGGAGGGAGTATTATGAATTTCTAC 58.332 38.462 0.00 0.00 0.00 2.59
547 548 7.289317 ACGGAGGGAGTATTATGAATTTCTACA 59.711 37.037 0.00 0.00 0.00 2.74
548 549 8.148351 CGGAGGGAGTATTATGAATTTCTACAA 58.852 37.037 0.00 0.00 0.00 2.41
549 550 9.495572 GGAGGGAGTATTATGAATTTCTACAAG 57.504 37.037 0.00 0.00 0.00 3.16
562 563 9.793259 TGAATTTCTACAAGATTTCTACCAACT 57.207 29.630 0.00 0.00 0.00 3.16
570 571 8.622948 ACAAGATTTCTACCAACTAAAAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
571 572 7.175119 ACAAGATTTCTACCAACTAAAAGAGGC 59.825 37.037 0.00 0.00 0.00 4.70
572 573 6.181190 AGATTTCTACCAACTAAAAGAGGCC 58.819 40.000 0.00 0.00 0.00 5.19
573 574 5.578157 TTTCTACCAACTAAAAGAGGCCT 57.422 39.130 3.86 3.86 0.00 5.19
574 575 4.553330 TCTACCAACTAAAAGAGGCCTG 57.447 45.455 12.00 0.00 0.00 4.85
575 576 4.164981 TCTACCAACTAAAAGAGGCCTGA 58.835 43.478 12.00 0.00 0.00 3.86
576 577 4.783227 TCTACCAACTAAAAGAGGCCTGAT 59.217 41.667 12.00 0.00 0.00 2.90
577 578 3.690460 ACCAACTAAAAGAGGCCTGATG 58.310 45.455 12.00 0.00 0.00 3.07
578 579 2.424956 CCAACTAAAAGAGGCCTGATGC 59.575 50.000 12.00 0.00 40.16 3.91
579 580 3.350833 CAACTAAAAGAGGCCTGATGCT 58.649 45.455 12.00 0.00 40.92 3.79
580 581 4.517285 CAACTAAAAGAGGCCTGATGCTA 58.483 43.478 12.00 0.00 40.92 3.49
581 582 5.128919 CAACTAAAAGAGGCCTGATGCTAT 58.871 41.667 12.00 0.00 40.92 2.97
582 583 5.379706 ACTAAAAGAGGCCTGATGCTATT 57.620 39.130 12.00 0.00 40.92 1.73
583 584 5.760131 ACTAAAAGAGGCCTGATGCTATTT 58.240 37.500 12.00 7.20 40.92 1.40
584 585 6.190587 ACTAAAAGAGGCCTGATGCTATTTT 58.809 36.000 12.00 3.77 40.92 1.82
585 586 7.346471 ACTAAAAGAGGCCTGATGCTATTTTA 58.654 34.615 12.00 4.87 40.92 1.52
586 587 6.456795 AAAAGAGGCCTGATGCTATTTTAC 57.543 37.500 12.00 0.00 40.92 2.01
587 588 4.778213 AGAGGCCTGATGCTATTTTACA 57.222 40.909 12.00 0.00 40.92 2.41
588 589 4.712476 AGAGGCCTGATGCTATTTTACAG 58.288 43.478 12.00 0.00 40.92 2.74
590 591 2.887152 GGCCTGATGCTATTTTACAGGG 59.113 50.000 0.00 0.00 45.45 4.45
591 592 2.294512 GCCTGATGCTATTTTACAGGGC 59.705 50.000 0.00 0.00 45.45 5.19
592 593 3.554934 CCTGATGCTATTTTACAGGGCA 58.445 45.455 0.00 0.00 42.77 5.36
593 594 3.316308 CCTGATGCTATTTTACAGGGCAC 59.684 47.826 0.00 0.00 42.77 5.01
594 595 4.202441 CTGATGCTATTTTACAGGGCACT 58.798 43.478 0.00 0.00 35.72 4.40
603 604 2.599578 CAGGGCACTGCAAAGGCT 60.600 61.111 1.22 0.00 41.91 4.58
604 605 2.599578 AGGGCACTGCAAAGGCTG 60.600 61.111 2.82 0.00 43.82 4.85
605 606 3.688159 GGGCACTGCAAAGGCTGG 61.688 66.667 2.82 0.00 42.66 4.85
606 607 2.914097 GGCACTGCAAAGGCTGGT 60.914 61.111 2.82 0.00 42.66 4.00
607 608 1.603455 GGCACTGCAAAGGCTGGTA 60.603 57.895 2.82 0.00 42.66 3.25
608 609 1.581447 GCACTGCAAAGGCTGGTAC 59.419 57.895 0.00 0.00 42.66 3.34
609 610 1.868997 CACTGCAAAGGCTGGTACG 59.131 57.895 0.00 0.00 42.66 3.67
610 611 0.602638 CACTGCAAAGGCTGGTACGA 60.603 55.000 0.00 0.00 42.66 3.43
611 612 0.107831 ACTGCAAAGGCTGGTACGAA 59.892 50.000 0.00 0.00 42.66 3.85
612 613 0.798776 CTGCAAAGGCTGGTACGAAG 59.201 55.000 0.00 0.00 41.91 3.79
613 614 1.234615 TGCAAAGGCTGGTACGAAGC 61.235 55.000 10.00 10.00 41.91 3.86
618 619 3.890674 GCTGGTACGAAGCCCAAG 58.109 61.111 7.74 0.00 34.45 3.61
619 620 1.295423 GCTGGTACGAAGCCCAAGA 59.705 57.895 7.74 0.00 34.45 3.02
620 621 0.321298 GCTGGTACGAAGCCCAAGAA 60.321 55.000 7.74 0.00 34.45 2.52
621 622 1.726853 CTGGTACGAAGCCCAAGAAG 58.273 55.000 0.00 0.00 31.32 2.85
622 623 1.275291 CTGGTACGAAGCCCAAGAAGA 59.725 52.381 0.00 0.00 31.32 2.87
623 624 1.001633 TGGTACGAAGCCCAAGAAGAC 59.998 52.381 0.00 0.00 0.00 3.01
624 625 1.675116 GGTACGAAGCCCAAGAAGACC 60.675 57.143 0.00 0.00 0.00 3.85
625 626 1.001633 GTACGAAGCCCAAGAAGACCA 59.998 52.381 0.00 0.00 0.00 4.02
626 627 0.250338 ACGAAGCCCAAGAAGACCAC 60.250 55.000 0.00 0.00 0.00 4.16
627 628 0.250295 CGAAGCCCAAGAAGACCACA 60.250 55.000 0.00 0.00 0.00 4.17
628 629 1.611673 CGAAGCCCAAGAAGACCACAT 60.612 52.381 0.00 0.00 0.00 3.21
629 630 2.354704 CGAAGCCCAAGAAGACCACATA 60.355 50.000 0.00 0.00 0.00 2.29
630 631 2.789409 AGCCCAAGAAGACCACATAC 57.211 50.000 0.00 0.00 0.00 2.39
631 632 1.066143 AGCCCAAGAAGACCACATACG 60.066 52.381 0.00 0.00 0.00 3.06
632 633 1.066430 GCCCAAGAAGACCACATACGA 60.066 52.381 0.00 0.00 0.00 3.43
633 634 2.893637 CCCAAGAAGACCACATACGAG 58.106 52.381 0.00 0.00 0.00 4.18
634 635 2.271800 CCAAGAAGACCACATACGAGC 58.728 52.381 0.00 0.00 0.00 5.03
635 636 2.271800 CAAGAAGACCACATACGAGCC 58.728 52.381 0.00 0.00 0.00 4.70
636 637 1.557099 AGAAGACCACATACGAGCCA 58.443 50.000 0.00 0.00 0.00 4.75
637 638 1.204941 AGAAGACCACATACGAGCCAC 59.795 52.381 0.00 0.00 0.00 5.01
638 639 0.249398 AAGACCACATACGAGCCACC 59.751 55.000 0.00 0.00 0.00 4.61
639 640 1.518572 GACCACATACGAGCCACCG 60.519 63.158 0.00 0.00 0.00 4.94
640 641 1.940883 GACCACATACGAGCCACCGA 61.941 60.000 0.00 0.00 0.00 4.69
641 642 1.518572 CCACATACGAGCCACCGAC 60.519 63.158 0.00 0.00 0.00 4.79
642 643 1.518572 CACATACGAGCCACCGACC 60.519 63.158 0.00 0.00 0.00 4.79
643 644 1.980232 ACATACGAGCCACCGACCA 60.980 57.895 0.00 0.00 0.00 4.02
644 645 1.518572 CATACGAGCCACCGACCAC 60.519 63.158 0.00 0.00 0.00 4.16
645 646 2.718073 ATACGAGCCACCGACCACC 61.718 63.158 0.00 0.00 0.00 4.61
648 649 4.394712 GAGCCACCGACCACCCAG 62.395 72.222 0.00 0.00 0.00 4.45
660 661 2.452116 CACCCAGTGGAGTGAAGGA 58.548 57.895 20.26 0.00 36.01 3.36
661 662 0.764890 CACCCAGTGGAGTGAAGGAA 59.235 55.000 20.26 0.00 36.01 3.36
662 663 1.059913 ACCCAGTGGAGTGAAGGAAG 58.940 55.000 11.95 0.00 34.81 3.46
672 673 3.078097 GAGTGAAGGAAGAAAAGGGCTC 58.922 50.000 0.00 0.00 0.00 4.70
687 688 1.273887 GCTCGATGTGGCGAATTCG 59.726 57.895 23.34 23.34 40.13 3.34
709 710 2.034842 CAGCCGCGTAAAAGTTATCGAG 60.035 50.000 4.92 0.00 0.00 4.04
737 738 0.523072 CACCATTCAAGAGCGTTGGG 59.477 55.000 2.47 0.00 0.00 4.12
738 739 1.244019 ACCATTCAAGAGCGTTGGGC 61.244 55.000 2.47 0.00 44.05 5.36
849 851 1.001487 CGCTGCATCAGTTTGAACCAA 60.001 47.619 0.00 0.00 33.43 3.67
1077 1113 2.304761 TCGAGCCCTATCCAGTTTTTGT 59.695 45.455 0.00 0.00 0.00 2.83
1078 1114 3.081804 CGAGCCCTATCCAGTTTTTGTT 58.918 45.455 0.00 0.00 0.00 2.83
1080 1116 4.379499 CGAGCCCTATCCAGTTTTTGTTTC 60.379 45.833 0.00 0.00 0.00 2.78
1081 1117 4.740902 AGCCCTATCCAGTTTTTGTTTCT 58.259 39.130 0.00 0.00 0.00 2.52
1082 1118 5.887754 AGCCCTATCCAGTTTTTGTTTCTA 58.112 37.500 0.00 0.00 0.00 2.10
1084 1120 7.639378 AGCCCTATCCAGTTTTTGTTTCTATA 58.361 34.615 0.00 0.00 0.00 1.31
1086 1122 7.338449 GCCCTATCCAGTTTTTGTTTCTATACA 59.662 37.037 0.00 0.00 0.00 2.29
1087 1123 8.674607 CCCTATCCAGTTTTTGTTTCTATACAC 58.325 37.037 0.00 0.00 0.00 2.90
1088 1124 9.449719 CCTATCCAGTTTTTGTTTCTATACACT 57.550 33.333 0.00 0.00 0.00 3.55
1174 1229 2.027625 CCGAGGTCAGTTTCGTGCC 61.028 63.158 0.00 0.00 35.14 5.01
1215 1270 2.032799 GTCGGTTTTGACATGCACTCAA 59.967 45.455 4.81 4.81 38.75 3.02
1713 1768 4.753662 ACCGGCAGCCTCCTCGTA 62.754 66.667 10.54 0.00 0.00 3.43
1726 1781 3.181489 CCTCCTCGTACAGGTACATTGTC 60.181 52.174 9.97 0.00 43.95 3.18
1767 1830 9.807649 AGTAATTAATCATTTCATCTTGCAACC 57.192 29.630 0.00 0.00 0.00 3.77
1776 1839 1.136252 CATCTTGCAACCGACGTTCTG 60.136 52.381 0.00 0.00 0.00 3.02
2022 2095 1.668419 ATTTCTACGTGGCCATCTGC 58.332 50.000 9.72 0.00 40.16 4.26
2116 2190 1.406860 GGCATCCTGACTCCTCCCTC 61.407 65.000 0.00 0.00 0.00 4.30
2121 2195 0.563173 CCTGACTCCTCCCTCCCATA 59.437 60.000 0.00 0.00 0.00 2.74
2139 2213 4.320202 CCCATACTTGTTTCCGTGTTTCAG 60.320 45.833 0.00 0.00 0.00 3.02
2166 2246 8.910351 ATCTAATAAAGTTGGAATCCTAGTGC 57.090 34.615 0.00 0.00 0.00 4.40
2167 2247 7.857456 TCTAATAAAGTTGGAATCCTAGTGCA 58.143 34.615 0.00 0.00 0.00 4.57
2172 2252 5.184892 AGTTGGAATCCTAGTGCATCTTT 57.815 39.130 0.00 0.00 0.00 2.52
2228 2308 2.112998 CCATTTGCCATCCTGGTGAAT 58.887 47.619 0.00 0.00 40.46 2.57
2240 2320 7.582242 GCCATCCTGGTGAATATAGTCATGTAT 60.582 40.741 6.11 0.00 40.46 2.29
2378 2473 2.033372 TCTCACACAAGTCGGGTACAA 58.967 47.619 0.00 0.00 0.00 2.41
2964 3059 0.879765 GGAGAAGAAGTCGTCGTCCA 59.120 55.000 0.00 0.00 35.52 4.02
3161 3265 1.001746 ACGTATCGATCCTAGGCTCGA 59.998 52.381 33.04 33.04 44.80 4.04
3162 3266 1.661617 CGTATCGATCCTAGGCTCGAG 59.338 57.143 33.58 21.18 44.12 4.04
3163 3267 2.702261 GTATCGATCCTAGGCTCGAGT 58.298 52.381 33.58 24.95 44.12 4.18
3164 3268 2.279935 ATCGATCCTAGGCTCGAGTT 57.720 50.000 33.58 20.68 44.12 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.830477 AGCCAGCTTTCACCACAAAAA 59.170 42.857 0.00 0.00 0.00 1.94
57 58 1.136695 CAGCCAGCTTTCACCACAAAA 59.863 47.619 0.00 0.00 0.00 2.44
58 59 0.746063 CAGCCAGCTTTCACCACAAA 59.254 50.000 0.00 0.00 0.00 2.83
59 60 0.106769 TCAGCCAGCTTTCACCACAA 60.107 50.000 0.00 0.00 0.00 3.33
60 61 0.535780 CTCAGCCAGCTTTCACCACA 60.536 55.000 0.00 0.00 0.00 4.17
61 62 0.536006 ACTCAGCCAGCTTTCACCAC 60.536 55.000 0.00 0.00 0.00 4.16
62 63 0.535780 CACTCAGCCAGCTTTCACCA 60.536 55.000 0.00 0.00 0.00 4.17
63 64 1.860484 GCACTCAGCCAGCTTTCACC 61.860 60.000 0.00 0.00 37.23 4.02
64 65 1.578423 GCACTCAGCCAGCTTTCAC 59.422 57.895 0.00 0.00 37.23 3.18
65 66 1.962822 CGCACTCAGCCAGCTTTCA 60.963 57.895 0.00 0.00 41.38 2.69
66 67 1.963338 ACGCACTCAGCCAGCTTTC 60.963 57.895 0.00 0.00 41.38 2.62
67 68 2.111878 ACGCACTCAGCCAGCTTT 59.888 55.556 0.00 0.00 41.38 3.51
68 69 2.460662 ATCACGCACTCAGCCAGCTT 62.461 55.000 0.00 0.00 41.38 3.74
69 70 2.952293 ATCACGCACTCAGCCAGCT 61.952 57.895 0.00 0.00 41.38 4.24
70 71 2.435586 ATCACGCACTCAGCCAGC 60.436 61.111 0.00 0.00 41.38 4.85
71 72 1.079612 TCATCACGCACTCAGCCAG 60.080 57.895 0.00 0.00 41.38 4.85
72 73 1.374631 GTCATCACGCACTCAGCCA 60.375 57.895 0.00 0.00 41.38 4.75
73 74 2.103042 GGTCATCACGCACTCAGCC 61.103 63.158 0.00 0.00 41.38 4.85
74 75 2.447887 CGGTCATCACGCACTCAGC 61.448 63.158 0.00 0.00 40.87 4.26
75 76 1.080501 ACGGTCATCACGCACTCAG 60.081 57.895 0.00 0.00 34.00 3.35
76 77 1.372872 CACGGTCATCACGCACTCA 60.373 57.895 0.00 0.00 34.00 3.41
77 78 2.730672 GCACGGTCATCACGCACTC 61.731 63.158 0.00 0.00 34.00 3.51
78 79 2.738521 GCACGGTCATCACGCACT 60.739 61.111 0.00 0.00 34.00 4.40
79 80 3.788766 GGCACGGTCATCACGCAC 61.789 66.667 0.00 0.00 34.00 5.34
80 81 3.816367 TTGGCACGGTCATCACGCA 62.816 57.895 0.00 0.00 34.00 5.24
81 82 1.922135 ATTTGGCACGGTCATCACGC 61.922 55.000 0.00 0.00 34.00 5.34
82 83 0.521291 AATTTGGCACGGTCATCACG 59.479 50.000 0.00 0.00 37.36 4.35
83 84 2.723124 AAATTTGGCACGGTCATCAC 57.277 45.000 0.00 0.00 0.00 3.06
84 85 4.075682 TCTAAAATTTGGCACGGTCATCA 58.924 39.130 0.00 0.00 0.00 3.07
85 86 4.662145 CTCTAAAATTTGGCACGGTCATC 58.338 43.478 0.00 0.00 0.00 2.92
86 87 3.119495 GCTCTAAAATTTGGCACGGTCAT 60.119 43.478 0.00 0.00 0.00 3.06
87 88 2.227865 GCTCTAAAATTTGGCACGGTCA 59.772 45.455 0.00 0.00 0.00 4.02
88 89 2.227865 TGCTCTAAAATTTGGCACGGTC 59.772 45.455 0.00 0.00 0.00 4.79
89 90 2.235016 TGCTCTAAAATTTGGCACGGT 58.765 42.857 0.00 0.00 0.00 4.83
90 91 3.508744 ATGCTCTAAAATTTGGCACGG 57.491 42.857 9.45 0.00 35.72 4.94
91 92 5.194199 CAAATGCTCTAAAATTTGGCACG 57.806 39.130 9.45 0.00 39.19 5.34
96 97 8.537049 TGAACATCCAAATGCTCTAAAATTTG 57.463 30.769 0.00 0.00 41.41 2.32
97 98 9.211485 CTTGAACATCCAAATGCTCTAAAATTT 57.789 29.630 0.00 0.00 36.26 1.82
98 99 8.370182 ACTTGAACATCCAAATGCTCTAAAATT 58.630 29.630 0.00 0.00 36.26 1.82
99 100 7.899973 ACTTGAACATCCAAATGCTCTAAAAT 58.100 30.769 0.00 0.00 36.26 1.82
100 101 7.288810 ACTTGAACATCCAAATGCTCTAAAA 57.711 32.000 0.00 0.00 36.26 1.52
101 102 6.899393 ACTTGAACATCCAAATGCTCTAAA 57.101 33.333 0.00 0.00 36.26 1.85
102 103 6.599244 CCTACTTGAACATCCAAATGCTCTAA 59.401 38.462 0.00 0.00 36.26 2.10
103 104 6.115446 CCTACTTGAACATCCAAATGCTCTA 58.885 40.000 0.00 0.00 36.26 2.43
104 105 4.946157 CCTACTTGAACATCCAAATGCTCT 59.054 41.667 0.00 0.00 36.26 4.09
105 106 4.702131 ACCTACTTGAACATCCAAATGCTC 59.298 41.667 0.00 0.00 36.26 4.26
106 107 4.666512 ACCTACTTGAACATCCAAATGCT 58.333 39.130 0.00 0.00 36.26 3.79
107 108 4.702131 AGACCTACTTGAACATCCAAATGC 59.298 41.667 0.00 0.00 36.26 3.56
108 109 6.824305 AAGACCTACTTGAACATCCAAATG 57.176 37.500 0.00 0.00 37.45 2.32
109 110 6.599638 GCTAAGACCTACTTGAACATCCAAAT 59.400 38.462 0.00 0.00 39.38 2.32
110 111 5.938125 GCTAAGACCTACTTGAACATCCAAA 59.062 40.000 0.00 0.00 39.38 3.28
111 112 5.488341 GCTAAGACCTACTTGAACATCCAA 58.512 41.667 0.00 0.00 39.38 3.53
112 113 4.381612 CGCTAAGACCTACTTGAACATCCA 60.382 45.833 0.00 0.00 39.38 3.41
113 114 4.113354 CGCTAAGACCTACTTGAACATCC 58.887 47.826 0.00 0.00 39.38 3.51
114 115 4.995124 TCGCTAAGACCTACTTGAACATC 58.005 43.478 0.00 0.00 39.38 3.06
115 116 5.401531 TTCGCTAAGACCTACTTGAACAT 57.598 39.130 0.00 0.00 39.38 2.71
116 117 4.859304 TTCGCTAAGACCTACTTGAACA 57.141 40.909 0.00 0.00 39.38 3.18
117 118 6.423001 TCTTTTTCGCTAAGACCTACTTGAAC 59.577 38.462 0.00 0.00 39.38 3.18
118 119 6.518493 TCTTTTTCGCTAAGACCTACTTGAA 58.482 36.000 0.00 0.00 39.38 2.69
119 120 6.015688 TCTCTTTTTCGCTAAGACCTACTTGA 60.016 38.462 0.00 0.00 39.38 3.02
120 121 6.157211 TCTCTTTTTCGCTAAGACCTACTTG 58.843 40.000 0.00 0.00 39.38 3.16
121 122 6.342338 TCTCTTTTTCGCTAAGACCTACTT 57.658 37.500 0.00 0.00 42.04 2.24
122 123 5.979288 TCTCTTTTTCGCTAAGACCTACT 57.021 39.130 0.00 0.00 0.00 2.57
123 124 7.598189 ATTTCTCTTTTTCGCTAAGACCTAC 57.402 36.000 0.00 0.00 0.00 3.18
124 125 8.617290 AAATTTCTCTTTTTCGCTAAGACCTA 57.383 30.769 0.00 0.00 0.00 3.08
125 126 7.511959 AAATTTCTCTTTTTCGCTAAGACCT 57.488 32.000 0.00 0.00 0.00 3.85
126 127 9.331106 CTTAAATTTCTCTTTTTCGCTAAGACC 57.669 33.333 0.00 0.00 0.00 3.85
127 128 9.331106 CCTTAAATTTCTCTTTTTCGCTAAGAC 57.669 33.333 0.00 0.00 0.00 3.01
128 129 9.063615 ACCTTAAATTTCTCTTTTTCGCTAAGA 57.936 29.630 0.00 0.00 0.00 2.10
129 130 9.331106 GACCTTAAATTTCTCTTTTTCGCTAAG 57.669 33.333 0.00 0.00 0.00 2.18
130 131 9.063615 AGACCTTAAATTTCTCTTTTTCGCTAA 57.936 29.630 0.00 0.00 0.00 3.09
131 132 8.617290 AGACCTTAAATTTCTCTTTTTCGCTA 57.383 30.769 0.00 0.00 0.00 4.26
132 133 7.511959 AGACCTTAAATTTCTCTTTTTCGCT 57.488 32.000 0.00 0.00 0.00 4.93
133 134 9.841880 ATTAGACCTTAAATTTCTCTTTTTCGC 57.158 29.630 0.00 0.00 0.00 4.70
144 145 8.957466 GCCTACACTCAATTAGACCTTAAATTT 58.043 33.333 0.00 0.00 0.00 1.82
145 146 8.329502 AGCCTACACTCAATTAGACCTTAAATT 58.670 33.333 0.00 0.00 0.00 1.82
146 147 7.862675 AGCCTACACTCAATTAGACCTTAAAT 58.137 34.615 0.00 0.00 0.00 1.40
147 148 7.253905 AGCCTACACTCAATTAGACCTTAAA 57.746 36.000 0.00 0.00 0.00 1.52
148 149 6.869206 AGCCTACACTCAATTAGACCTTAA 57.131 37.500 0.00 0.00 0.00 1.85
149 150 6.668283 AGAAGCCTACACTCAATTAGACCTTA 59.332 38.462 0.00 0.00 0.00 2.69
150 151 5.485708 AGAAGCCTACACTCAATTAGACCTT 59.514 40.000 0.00 0.00 0.00 3.50
151 152 5.026790 AGAAGCCTACACTCAATTAGACCT 58.973 41.667 0.00 0.00 0.00 3.85
152 153 5.346181 AGAAGCCTACACTCAATTAGACC 57.654 43.478 0.00 0.00 0.00 3.85
153 154 8.773404 TTAAAGAAGCCTACACTCAATTAGAC 57.227 34.615 0.00 0.00 0.00 2.59
154 155 9.787435 TTTTAAAGAAGCCTACACTCAATTAGA 57.213 29.630 0.00 0.00 0.00 2.10
157 158 9.696917 CATTTTTAAAGAAGCCTACACTCAATT 57.303 29.630 0.00 0.00 0.00 2.32
158 159 8.860088 ACATTTTTAAAGAAGCCTACACTCAAT 58.140 29.630 0.00 0.00 0.00 2.57
159 160 8.134895 CACATTTTTAAAGAAGCCTACACTCAA 58.865 33.333 0.00 0.00 0.00 3.02
160 161 7.500892 TCACATTTTTAAAGAAGCCTACACTCA 59.499 33.333 0.00 0.00 0.00 3.41
161 162 7.871853 TCACATTTTTAAAGAAGCCTACACTC 58.128 34.615 0.00 0.00 0.00 3.51
162 163 7.817418 TCACATTTTTAAAGAAGCCTACACT 57.183 32.000 0.00 0.00 0.00 3.55
163 164 9.476202 AATTCACATTTTTAAAGAAGCCTACAC 57.524 29.630 0.00 0.00 0.00 2.90
164 165 9.474920 CAATTCACATTTTTAAAGAAGCCTACA 57.525 29.630 0.00 0.00 0.00 2.74
165 166 8.925700 CCAATTCACATTTTTAAAGAAGCCTAC 58.074 33.333 0.00 0.00 0.00 3.18
166 167 8.646900 ACCAATTCACATTTTTAAAGAAGCCTA 58.353 29.630 0.00 0.00 0.00 3.93
167 168 7.508687 ACCAATTCACATTTTTAAAGAAGCCT 58.491 30.769 0.00 0.00 0.00 4.58
168 169 7.728847 ACCAATTCACATTTTTAAAGAAGCC 57.271 32.000 0.00 0.00 0.00 4.35
169 170 8.282592 GGAACCAATTCACATTTTTAAAGAAGC 58.717 33.333 0.00 0.00 36.46 3.86
170 171 9.546428 AGGAACCAATTCACATTTTTAAAGAAG 57.454 29.630 0.00 0.00 36.46 2.85
171 172 9.541143 GAGGAACCAATTCACATTTTTAAAGAA 57.459 29.630 0.00 0.00 36.46 2.52
172 173 8.147704 GGAGGAACCAATTCACATTTTTAAAGA 58.852 33.333 0.00 0.00 36.46 2.52
173 174 8.150296 AGGAGGAACCAATTCACATTTTTAAAG 58.850 33.333 0.00 0.00 42.04 1.85
174 175 8.028652 AGGAGGAACCAATTCACATTTTTAAA 57.971 30.769 0.00 0.00 42.04 1.52
175 176 7.610580 AGGAGGAACCAATTCACATTTTTAA 57.389 32.000 0.00 0.00 42.04 1.52
176 177 8.893563 ATAGGAGGAACCAATTCACATTTTTA 57.106 30.769 0.00 0.00 42.04 1.52
177 178 7.093333 GGATAGGAGGAACCAATTCACATTTTT 60.093 37.037 0.00 0.00 42.04 1.94
178 179 6.381133 GGATAGGAGGAACCAATTCACATTTT 59.619 38.462 0.00 0.00 42.04 1.82
179 180 5.893824 GGATAGGAGGAACCAATTCACATTT 59.106 40.000 0.00 0.00 42.04 2.32
180 181 5.194537 AGGATAGGAGGAACCAATTCACATT 59.805 40.000 0.00 0.00 42.04 2.71
181 182 4.728860 AGGATAGGAGGAACCAATTCACAT 59.271 41.667 0.00 0.00 42.04 3.21
182 183 4.111577 AGGATAGGAGGAACCAATTCACA 58.888 43.478 0.00 0.00 42.04 3.58
183 184 4.779993 AGGATAGGAGGAACCAATTCAC 57.220 45.455 0.00 0.00 42.04 3.18
184 185 9.494055 CTATATAGGATAGGAGGAACCAATTCA 57.506 37.037 1.40 0.00 42.04 2.57
185 186 9.716556 TCTATATAGGATAGGAGGAACCAATTC 57.283 37.037 9.89 0.00 42.04 2.17
255 256 9.892130 GAGGGAGTATAGAATTTTCAAAGAGAA 57.108 33.333 0.00 0.00 0.00 2.87
256 257 8.487028 GGAGGGAGTATAGAATTTTCAAAGAGA 58.513 37.037 0.00 0.00 0.00 3.10
257 258 7.439655 CGGAGGGAGTATAGAATTTTCAAAGAG 59.560 40.741 0.00 0.00 0.00 2.85
258 259 7.093024 ACGGAGGGAGTATAGAATTTTCAAAGA 60.093 37.037 0.00 0.00 0.00 2.52
259 260 7.048512 ACGGAGGGAGTATAGAATTTTCAAAG 58.951 38.462 0.00 0.00 0.00 2.77
260 261 6.954232 ACGGAGGGAGTATAGAATTTTCAAA 58.046 36.000 0.00 0.00 0.00 2.69
261 262 6.555463 ACGGAGGGAGTATAGAATTTTCAA 57.445 37.500 0.00 0.00 0.00 2.69
262 263 6.555463 AACGGAGGGAGTATAGAATTTTCA 57.445 37.500 0.00 0.00 0.00 2.69
263 264 7.860918 AAAACGGAGGGAGTATAGAATTTTC 57.139 36.000 0.00 0.00 0.00 2.29
264 265 9.916360 ATAAAAACGGAGGGAGTATAGAATTTT 57.084 29.630 0.00 0.00 0.00 1.82
265 266 9.916360 AATAAAAACGGAGGGAGTATAGAATTT 57.084 29.630 0.00 0.00 0.00 1.82
266 267 9.916360 AAATAAAAACGGAGGGAGTATAGAATT 57.084 29.630 0.00 0.00 0.00 2.17
269 270 9.205513 ACTAAATAAAAACGGAGGGAGTATAGA 57.794 33.333 0.00 0.00 0.00 1.98
270 271 9.473640 GACTAAATAAAAACGGAGGGAGTATAG 57.526 37.037 0.00 0.00 0.00 1.31
271 272 8.424133 GGACTAAATAAAAACGGAGGGAGTATA 58.576 37.037 0.00 0.00 0.00 1.47
272 273 7.278135 GGACTAAATAAAAACGGAGGGAGTAT 58.722 38.462 0.00 0.00 0.00 2.12
273 274 6.627953 CGGACTAAATAAAAACGGAGGGAGTA 60.628 42.308 0.00 0.00 0.00 2.59
274 275 5.494724 GGACTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
275 276 4.569564 CGGACTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
276 277 4.506758 CGGACTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
277 278 3.064408 GCGGACTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
278 279 3.685756 TGCGGACTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
279 280 4.932268 TGCGGACTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
280 281 7.556733 AATATGCGGACTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
281 282 8.553696 ACTAATATGCGGACTAAATAAAAACGG 58.446 33.333 0.00 0.00 0.00 4.44
282 283 9.925268 AACTAATATGCGGACTAAATAAAAACG 57.075 29.630 0.00 0.00 0.00 3.60
289 290 9.337396 TGATCAAAACTAATATGCGGACTAAAT 57.663 29.630 0.00 0.00 0.00 1.40
290 291 8.725405 TGATCAAAACTAATATGCGGACTAAA 57.275 30.769 0.00 0.00 0.00 1.85
291 292 8.725405 TTGATCAAAACTAATATGCGGACTAA 57.275 30.769 5.45 0.00 0.00 2.24
292 293 8.725405 TTTGATCAAAACTAATATGCGGACTA 57.275 30.769 18.45 0.00 0.00 2.59
293 294 7.336931 ACTTTGATCAAAACTAATATGCGGACT 59.663 33.333 20.82 0.00 0.00 3.85
294 295 7.472543 ACTTTGATCAAAACTAATATGCGGAC 58.527 34.615 20.82 0.00 0.00 4.79
295 296 7.335673 TGACTTTGATCAAAACTAATATGCGGA 59.664 33.333 20.82 0.00 0.00 5.54
296 297 7.471721 TGACTTTGATCAAAACTAATATGCGG 58.528 34.615 20.82 7.97 0.00 5.69
297 298 8.894409 TTGACTTTGATCAAAACTAATATGCG 57.106 30.769 20.82 8.44 35.65 4.73
298 299 8.801913 GCTTGACTTTGATCAAAACTAATATGC 58.198 33.333 20.82 13.38 38.12 3.14
316 317 8.232913 TGGTCAAAGTTTATAAAGCTTGACTT 57.767 30.769 29.50 16.55 38.94 3.01
317 318 7.817418 TGGTCAAAGTTTATAAAGCTTGACT 57.183 32.000 29.50 12.88 38.94 3.41
318 319 8.507470 CTTGGTCAAAGTTTATAAAGCTTGAC 57.493 34.615 26.50 26.50 38.59 3.18
400 401 9.710900 TCTATATGATGCGAAAGTACATTCAAT 57.289 29.630 11.10 4.10 0.00 2.57
401 402 9.710900 ATCTATATGATGCGAAAGTACATTCAA 57.289 29.630 11.10 0.00 33.43 2.69
402 403 9.710900 AATCTATATGATGCGAAAGTACATTCA 57.289 29.630 11.10 0.00 35.21 2.57
405 406 9.494271 ACAAATCTATATGATGCGAAAGTACAT 57.506 29.630 0.00 0.00 35.21 2.29
406 407 8.887036 ACAAATCTATATGATGCGAAAGTACA 57.113 30.769 0.00 0.00 35.21 2.90
409 410 9.325198 TGTAACAAATCTATATGATGCGAAAGT 57.675 29.630 0.00 0.00 35.21 2.66
410 411 9.803130 CTGTAACAAATCTATATGATGCGAAAG 57.197 33.333 0.00 0.00 35.21 2.62
411 412 9.325198 ACTGTAACAAATCTATATGATGCGAAA 57.675 29.630 0.00 0.00 35.21 3.46
412 413 8.887036 ACTGTAACAAATCTATATGATGCGAA 57.113 30.769 0.00 0.00 35.21 4.70
413 414 9.974980 TTACTGTAACAAATCTATATGATGCGA 57.025 29.630 0.00 0.00 35.21 5.10
455 456 9.733556 TCATAAAGTTTGACCAAGCTTATAGAA 57.266 29.630 11.28 0.00 40.24 2.10
456 457 9.733556 TTCATAAAGTTTGACCAAGCTTATAGA 57.266 29.630 11.28 7.49 40.24 1.98
457 458 9.994432 CTTCATAAAGTTTGACCAAGCTTATAG 57.006 33.333 11.28 5.73 40.24 1.31
458 459 9.515226 ACTTCATAAAGTTTGACCAAGCTTATA 57.485 29.630 11.28 7.55 43.28 0.98
459 460 8.409358 ACTTCATAAAGTTTGACCAAGCTTAT 57.591 30.769 11.28 0.00 43.28 1.73
460 461 7.817418 ACTTCATAAAGTTTGACCAAGCTTA 57.183 32.000 11.28 2.96 43.28 3.09
461 462 6.715347 ACTTCATAAAGTTTGACCAAGCTT 57.285 33.333 6.11 6.11 43.28 3.74
504 505 9.991906 CTCCCTCCGTTTTATTTATTCTGTATA 57.008 33.333 0.00 0.00 0.00 1.47
505 506 8.491958 ACTCCCTCCGTTTTATTTATTCTGTAT 58.508 33.333 0.00 0.00 0.00 2.29
506 507 7.854337 ACTCCCTCCGTTTTATTTATTCTGTA 58.146 34.615 0.00 0.00 0.00 2.74
507 508 6.718294 ACTCCCTCCGTTTTATTTATTCTGT 58.282 36.000 0.00 0.00 0.00 3.41
508 509 8.904099 ATACTCCCTCCGTTTTATTTATTCTG 57.096 34.615 0.00 0.00 0.00 3.02
514 515 9.862149 ATTCATAATACTCCCTCCGTTTTATTT 57.138 29.630 0.00 0.00 0.00 1.40
515 516 9.862149 AATTCATAATACTCCCTCCGTTTTATT 57.138 29.630 0.00 0.00 0.00 1.40
516 517 9.862149 AAATTCATAATACTCCCTCCGTTTTAT 57.138 29.630 0.00 0.00 0.00 1.40
517 518 9.333724 GAAATTCATAATACTCCCTCCGTTTTA 57.666 33.333 0.00 0.00 0.00 1.52
518 519 8.053355 AGAAATTCATAATACTCCCTCCGTTTT 58.947 33.333 0.00 0.00 0.00 2.43
519 520 7.574607 AGAAATTCATAATACTCCCTCCGTTT 58.425 34.615 0.00 0.00 0.00 3.60
520 521 7.138054 AGAAATTCATAATACTCCCTCCGTT 57.862 36.000 0.00 0.00 0.00 4.44
521 522 6.749036 AGAAATTCATAATACTCCCTCCGT 57.251 37.500 0.00 0.00 0.00 4.69
522 523 7.667557 TGTAGAAATTCATAATACTCCCTCCG 58.332 38.462 0.00 0.00 0.00 4.63
523 524 9.495572 CTTGTAGAAATTCATAATACTCCCTCC 57.504 37.037 0.00 0.00 0.00 4.30
536 537 9.793259 AGTTGGTAGAAATCTTGTAGAAATTCA 57.207 29.630 0.00 0.00 30.87 2.57
544 545 9.720769 CCTCTTTTAGTTGGTAGAAATCTTGTA 57.279 33.333 0.00 0.00 0.00 2.41
545 546 7.175119 GCCTCTTTTAGTTGGTAGAAATCTTGT 59.825 37.037 0.00 0.00 0.00 3.16
546 547 7.362142 GGCCTCTTTTAGTTGGTAGAAATCTTG 60.362 40.741 0.00 0.00 0.00 3.02
547 548 6.659668 GGCCTCTTTTAGTTGGTAGAAATCTT 59.340 38.462 0.00 0.00 0.00 2.40
548 549 6.012421 AGGCCTCTTTTAGTTGGTAGAAATCT 60.012 38.462 0.00 0.00 0.00 2.40
549 550 6.094186 CAGGCCTCTTTTAGTTGGTAGAAATC 59.906 42.308 0.00 0.00 0.00 2.17
550 551 5.946377 CAGGCCTCTTTTAGTTGGTAGAAAT 59.054 40.000 0.00 0.00 0.00 2.17
551 552 5.072600 TCAGGCCTCTTTTAGTTGGTAGAAA 59.927 40.000 0.00 0.00 0.00 2.52
552 553 4.595781 TCAGGCCTCTTTTAGTTGGTAGAA 59.404 41.667 0.00 0.00 0.00 2.10
553 554 4.164981 TCAGGCCTCTTTTAGTTGGTAGA 58.835 43.478 0.00 0.00 0.00 2.59
554 555 4.553330 TCAGGCCTCTTTTAGTTGGTAG 57.447 45.455 0.00 0.00 0.00 3.18
555 556 4.843728 CATCAGGCCTCTTTTAGTTGGTA 58.156 43.478 0.00 0.00 0.00 3.25
556 557 3.690460 CATCAGGCCTCTTTTAGTTGGT 58.310 45.455 0.00 0.00 0.00 3.67
557 558 2.424956 GCATCAGGCCTCTTTTAGTTGG 59.575 50.000 0.00 0.00 36.11 3.77
558 559 3.350833 AGCATCAGGCCTCTTTTAGTTG 58.649 45.455 0.00 0.00 46.50 3.16
559 560 3.728385 AGCATCAGGCCTCTTTTAGTT 57.272 42.857 0.00 0.00 46.50 2.24
560 561 5.379706 AATAGCATCAGGCCTCTTTTAGT 57.620 39.130 0.00 0.00 46.50 2.24
561 562 6.705863 AAAATAGCATCAGGCCTCTTTTAG 57.294 37.500 0.00 0.00 46.50 1.85
562 563 7.116075 TGTAAAATAGCATCAGGCCTCTTTTA 58.884 34.615 0.00 2.53 46.50 1.52
563 564 5.951747 TGTAAAATAGCATCAGGCCTCTTTT 59.048 36.000 0.00 3.47 46.50 2.27
564 565 5.509498 TGTAAAATAGCATCAGGCCTCTTT 58.491 37.500 0.00 0.00 46.50 2.52
565 566 5.116084 TGTAAAATAGCATCAGGCCTCTT 57.884 39.130 0.00 0.00 46.50 2.85
566 567 4.445448 CCTGTAAAATAGCATCAGGCCTCT 60.445 45.833 0.00 0.00 46.50 3.69
567 568 3.817647 CCTGTAAAATAGCATCAGGCCTC 59.182 47.826 0.00 0.00 46.50 4.70
568 569 3.435601 CCCTGTAAAATAGCATCAGGCCT 60.436 47.826 0.00 0.00 46.50 5.19
569 570 2.887152 CCCTGTAAAATAGCATCAGGCC 59.113 50.000 0.00 0.00 46.50 5.19
570 571 2.294512 GCCCTGTAAAATAGCATCAGGC 59.705 50.000 0.00 0.00 42.77 4.85
571 572 3.316308 GTGCCCTGTAAAATAGCATCAGG 59.684 47.826 0.00 0.00 43.46 3.86
572 573 4.036027 CAGTGCCCTGTAAAATAGCATCAG 59.964 45.833 0.00 0.00 35.62 2.90
573 574 3.947196 CAGTGCCCTGTAAAATAGCATCA 59.053 43.478 0.00 0.00 35.62 3.07
574 575 3.243201 GCAGTGCCCTGTAAAATAGCATC 60.243 47.826 2.85 0.00 41.02 3.91
575 576 2.689983 GCAGTGCCCTGTAAAATAGCAT 59.310 45.455 2.85 0.00 41.02 3.79
576 577 2.091541 GCAGTGCCCTGTAAAATAGCA 58.908 47.619 2.85 0.00 41.02 3.49
577 578 2.091541 TGCAGTGCCCTGTAAAATAGC 58.908 47.619 13.72 0.00 41.02 2.97
578 579 4.782019 TTTGCAGTGCCCTGTAAAATAG 57.218 40.909 13.72 0.00 46.12 1.73
582 583 1.327303 CCTTTGCAGTGCCCTGTAAA 58.673 50.000 13.72 11.50 46.66 2.01
583 584 1.178534 GCCTTTGCAGTGCCCTGTAA 61.179 55.000 13.72 0.00 40.88 2.41
584 585 1.603455 GCCTTTGCAGTGCCCTGTA 60.603 57.895 13.72 0.00 41.02 2.74
585 586 2.914097 GCCTTTGCAGTGCCCTGT 60.914 61.111 13.72 0.00 41.02 4.00
586 587 2.599578 AGCCTTTGCAGTGCCCTG 60.600 61.111 13.72 1.93 41.13 4.45
587 588 2.599578 CAGCCTTTGCAGTGCCCT 60.600 61.111 13.72 0.00 41.13 5.19
588 589 3.688159 CCAGCCTTTGCAGTGCCC 61.688 66.667 13.72 0.00 41.13 5.36
589 590 1.603455 TACCAGCCTTTGCAGTGCC 60.603 57.895 13.72 0.00 41.13 5.01
590 591 1.581447 GTACCAGCCTTTGCAGTGC 59.419 57.895 8.58 8.58 41.13 4.40
591 592 0.602638 TCGTACCAGCCTTTGCAGTG 60.603 55.000 0.00 0.00 41.13 3.66
592 593 0.107831 TTCGTACCAGCCTTTGCAGT 59.892 50.000 0.00 0.00 41.13 4.40
593 594 0.798776 CTTCGTACCAGCCTTTGCAG 59.201 55.000 0.00 0.00 41.13 4.41
594 595 1.234615 GCTTCGTACCAGCCTTTGCA 61.235 55.000 0.89 0.00 41.13 4.08
595 596 1.502190 GCTTCGTACCAGCCTTTGC 59.498 57.895 0.89 0.00 37.95 3.68
601 602 0.321298 TTCTTGGGCTTCGTACCAGC 60.321 55.000 3.49 3.49 38.16 4.85
602 603 1.275291 TCTTCTTGGGCTTCGTACCAG 59.725 52.381 0.00 0.00 38.16 4.00
603 604 1.001633 GTCTTCTTGGGCTTCGTACCA 59.998 52.381 0.00 0.00 34.29 3.25
604 605 1.675116 GGTCTTCTTGGGCTTCGTACC 60.675 57.143 0.00 0.00 0.00 3.34
605 606 1.001633 TGGTCTTCTTGGGCTTCGTAC 59.998 52.381 0.00 0.00 0.00 3.67
606 607 1.001633 GTGGTCTTCTTGGGCTTCGTA 59.998 52.381 0.00 0.00 0.00 3.43
607 608 0.250338 GTGGTCTTCTTGGGCTTCGT 60.250 55.000 0.00 0.00 0.00 3.85
608 609 0.250295 TGTGGTCTTCTTGGGCTTCG 60.250 55.000 0.00 0.00 0.00 3.79
609 610 2.206576 ATGTGGTCTTCTTGGGCTTC 57.793 50.000 0.00 0.00 0.00 3.86
610 611 2.615493 CGTATGTGGTCTTCTTGGGCTT 60.615 50.000 0.00 0.00 0.00 4.35
611 612 1.066143 CGTATGTGGTCTTCTTGGGCT 60.066 52.381 0.00 0.00 0.00 5.19
612 613 1.066430 TCGTATGTGGTCTTCTTGGGC 60.066 52.381 0.00 0.00 0.00 5.36
613 614 2.893637 CTCGTATGTGGTCTTCTTGGG 58.106 52.381 0.00 0.00 0.00 4.12
614 615 2.271800 GCTCGTATGTGGTCTTCTTGG 58.728 52.381 0.00 0.00 0.00 3.61
615 616 2.271800 GGCTCGTATGTGGTCTTCTTG 58.728 52.381 0.00 0.00 0.00 3.02
616 617 1.899814 TGGCTCGTATGTGGTCTTCTT 59.100 47.619 0.00 0.00 0.00 2.52
617 618 1.204941 GTGGCTCGTATGTGGTCTTCT 59.795 52.381 0.00 0.00 0.00 2.85
618 619 1.641577 GTGGCTCGTATGTGGTCTTC 58.358 55.000 0.00 0.00 0.00 2.87
619 620 0.249398 GGTGGCTCGTATGTGGTCTT 59.751 55.000 0.00 0.00 0.00 3.01
620 621 1.898154 GGTGGCTCGTATGTGGTCT 59.102 57.895 0.00 0.00 0.00 3.85
621 622 1.518572 CGGTGGCTCGTATGTGGTC 60.519 63.158 0.00 0.00 0.00 4.02
622 623 1.980232 TCGGTGGCTCGTATGTGGT 60.980 57.895 1.40 0.00 0.00 4.16
623 624 1.518572 GTCGGTGGCTCGTATGTGG 60.519 63.158 1.40 0.00 0.00 4.17
624 625 1.518572 GGTCGGTGGCTCGTATGTG 60.519 63.158 1.40 0.00 0.00 3.21
625 626 1.980232 TGGTCGGTGGCTCGTATGT 60.980 57.895 1.40 0.00 0.00 2.29
626 627 1.518572 GTGGTCGGTGGCTCGTATG 60.519 63.158 1.40 0.00 0.00 2.39
627 628 2.718073 GGTGGTCGGTGGCTCGTAT 61.718 63.158 1.40 0.00 0.00 3.06
628 629 3.376078 GGTGGTCGGTGGCTCGTA 61.376 66.667 1.40 0.00 0.00 3.43
631 632 4.394712 CTGGGTGGTCGGTGGCTC 62.395 72.222 0.00 0.00 0.00 4.70
642 643 0.764890 TTCCTTCACTCCACTGGGTG 59.235 55.000 9.36 9.36 34.93 4.61
643 644 1.059913 CTTCCTTCACTCCACTGGGT 58.940 55.000 0.00 0.00 34.93 4.51
644 645 1.352083 TCTTCCTTCACTCCACTGGG 58.648 55.000 0.00 0.00 0.00 4.45
645 646 3.492102 TTTCTTCCTTCACTCCACTGG 57.508 47.619 0.00 0.00 0.00 4.00
646 647 3.817647 CCTTTTCTTCCTTCACTCCACTG 59.182 47.826 0.00 0.00 0.00 3.66
647 648 3.181439 CCCTTTTCTTCCTTCACTCCACT 60.181 47.826 0.00 0.00 0.00 4.00
648 649 3.149981 CCCTTTTCTTCCTTCACTCCAC 58.850 50.000 0.00 0.00 0.00 4.02
649 650 2.489073 GCCCTTTTCTTCCTTCACTCCA 60.489 50.000 0.00 0.00 0.00 3.86
650 651 2.163509 GCCCTTTTCTTCCTTCACTCC 58.836 52.381 0.00 0.00 0.00 3.85
651 652 3.078097 GAGCCCTTTTCTTCCTTCACTC 58.922 50.000 0.00 0.00 0.00 3.51
652 653 2.551071 CGAGCCCTTTTCTTCCTTCACT 60.551 50.000 0.00 0.00 0.00 3.41
653 654 1.807142 CGAGCCCTTTTCTTCCTTCAC 59.193 52.381 0.00 0.00 0.00 3.18
654 655 1.697432 TCGAGCCCTTTTCTTCCTTCA 59.303 47.619 0.00 0.00 0.00 3.02
655 656 2.474410 TCGAGCCCTTTTCTTCCTTC 57.526 50.000 0.00 0.00 0.00 3.46
656 657 2.040412 ACATCGAGCCCTTTTCTTCCTT 59.960 45.455 0.00 0.00 0.00 3.36
657 658 1.630878 ACATCGAGCCCTTTTCTTCCT 59.369 47.619 0.00 0.00 0.00 3.36
658 659 1.740025 CACATCGAGCCCTTTTCTTCC 59.260 52.381 0.00 0.00 0.00 3.46
659 660 1.740025 CCACATCGAGCCCTTTTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
660 661 1.826385 CCACATCGAGCCCTTTTCTT 58.174 50.000 0.00 0.00 0.00 2.52
661 662 0.678048 GCCACATCGAGCCCTTTTCT 60.678 55.000 0.00 0.00 0.00 2.52
662 663 1.803289 GCCACATCGAGCCCTTTTC 59.197 57.895 0.00 0.00 0.00 2.29
687 688 1.591394 CGATAACTTTTACGCGGCTGC 60.591 52.381 12.47 7.70 37.91 5.25
701 702 1.583054 GTGGTGATGGGCTCGATAAC 58.417 55.000 0.00 0.00 0.00 1.89
703 704 0.689412 TGGTGGTGATGGGCTCGATA 60.689 55.000 0.00 0.00 0.00 2.92
705 706 1.561769 AATGGTGGTGATGGGCTCGA 61.562 55.000 0.00 0.00 0.00 4.04
709 710 0.819582 CTTGAATGGTGGTGATGGGC 59.180 55.000 0.00 0.00 0.00 5.36
737 738 2.052766 GTGCGCGTGATATGCTGC 60.053 61.111 8.43 0.00 32.89 5.25
738 739 0.597377 TAGGTGCGCGTGATATGCTG 60.597 55.000 8.43 0.00 0.00 4.41
739 740 0.597637 GTAGGTGCGCGTGATATGCT 60.598 55.000 8.43 0.00 0.00 3.79
740 741 0.597637 AGTAGGTGCGCGTGATATGC 60.598 55.000 8.43 0.00 0.00 3.14
741 742 1.269051 TGAGTAGGTGCGCGTGATATG 60.269 52.381 8.43 0.00 0.00 1.78
744 745 1.153823 GTGAGTAGGTGCGCGTGAT 60.154 57.895 8.43 0.00 0.00 3.06
776 777 0.545787 AGGACACGGTGGGTAATGGA 60.546 55.000 13.48 0.00 0.00 3.41
781 782 0.901580 GAAGGAGGACACGGTGGGTA 60.902 60.000 13.48 0.00 0.00 3.69
849 851 1.973281 CCAGGTGTCCGCATTTGCT 60.973 57.895 0.51 0.00 39.32 3.91
942 944 1.964608 TTGAGCTGGGAGAGATGCCG 61.965 60.000 0.00 0.00 0.00 5.69
1199 1254 4.422840 CACAGTTTGAGTGCATGTCAAAA 58.577 39.130 22.02 9.35 43.68 2.44
1215 1270 0.172352 CACGCACCAAAACCACAGTT 59.828 50.000 0.00 0.00 38.03 3.16
1653 1708 1.524621 GTCCATGGCATACTGCGCT 60.525 57.895 9.73 0.00 46.21 5.92
1680 1735 3.056328 GTCTTGTCCTTGCCGGCC 61.056 66.667 26.77 8.57 0.00 6.13
1713 1768 4.216257 GCAAGAATGTGACAATGTACCTGT 59.784 41.667 0.00 0.00 0.00 4.00
1726 1781 8.817100 TGATTAATTACTACGAGCAAGAATGTG 58.183 33.333 0.00 0.00 0.00 3.21
1767 1830 3.111838 CAGGATCATCTTCAGAACGTCG 58.888 50.000 0.00 0.00 0.00 5.12
1905 1968 4.643387 GCTGGTGTCCTTGGCGGT 62.643 66.667 0.00 0.00 0.00 5.68
2022 2095 3.934457 ATTTAGAAACCAAAGTGGCGG 57.066 42.857 0.00 0.00 42.67 6.13
2116 2190 3.566322 TGAAACACGGAAACAAGTATGGG 59.434 43.478 0.00 0.00 0.00 4.00
2121 2195 4.881850 AGATTCTGAAACACGGAAACAAGT 59.118 37.500 0.00 0.00 45.41 3.16
2172 2252 7.375834 CAGTAGTACTGTGAACAGGATTACAA 58.624 38.462 22.92 0.00 46.46 2.41
2202 2282 0.325860 AGGATGGCAAATGGGTGCAT 60.326 50.000 0.00 0.00 46.81 3.96
2228 2308 7.040892 GGTTGTGTCTCCGTATACATGACTATA 60.041 40.741 0.00 0.00 0.00 1.31
2240 2320 0.753867 TGCAAGGTTGTGTCTCCGTA 59.246 50.000 0.00 0.00 0.00 4.02
2378 2473 0.248054 CGTGCGTTTGTTGCTGTCTT 60.248 50.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.