Multiple sequence alignment - TraesCS3D01G253600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G253600
chr3D
100.000
4247
0
0
1
4247
355172584
355176830
0.000000e+00
7843.0
1
TraesCS3D01G253600
chr3D
100.000
36
0
0
3482
3517
355175977
355176012
2.740000e-07
67.6
2
TraesCS3D01G253600
chr3D
100.000
36
0
0
3394
3429
355176065
355176100
2.740000e-07
67.6
3
TraesCS3D01G253600
chr3D
97.222
36
1
0
4066
4101
18728921
18728886
1.280000e-05
62.1
4
TraesCS3D01G253600
chr3D
97.222
36
1
0
3431
3466
355175854
355175889
1.280000e-05
62.1
5
TraesCS3D01G253600
chr3D
97.222
36
1
0
3271
3306
355176014
355176049
1.280000e-05
62.1
6
TraesCS3D01G253600
chr3A
98.360
1707
21
5
987
2692
477711225
477709525
0.000000e+00
2990.0
7
TraesCS3D01G253600
chr3A
91.518
731
29
18
2712
3429
477709534
477708824
0.000000e+00
976.0
8
TraesCS3D01G253600
chr3A
92.717
508
25
7
3466
3972
477708875
477708379
0.000000e+00
723.0
9
TraesCS3D01G253600
chr3A
88.688
442
45
2
2251
2692
617792492
617792056
6.250000e-148
534.0
10
TraesCS3D01G253600
chr3A
88.235
442
47
2
2251
2692
745089841
745090277
1.350000e-144
523.0
11
TraesCS3D01G253600
chr3A
92.029
276
19
1
3644
3919
477707877
477707605
6.660000e-103
385.0
12
TraesCS3D01G253600
chr3A
84.746
236
18
11
4025
4242
474068471
474068706
1.990000e-53
220.0
13
TraesCS3D01G253600
chr3A
89.873
158
11
1
4088
4245
477708152
477708000
9.310000e-47
198.0
14
TraesCS3D01G253600
chr3A
92.857
84
3
1
817
897
477711307
477711224
7.460000e-23
119.0
15
TraesCS3D01G253600
chr3A
92.405
79
5
1
4021
4098
477706068
477705990
1.250000e-20
111.0
16
TraesCS3D01G253600
chr3B
94.795
1172
35
5
747
1912
456107733
456108884
0.000000e+00
1803.0
17
TraesCS3D01G253600
chr3B
93.921
1168
45
16
764
1912
463235706
463234546
0.000000e+00
1740.0
18
TraesCS3D01G253600
chr3B
92.857
714
35
10
1992
2692
463234041
463233331
0.000000e+00
1022.0
19
TraesCS3D01G253600
chr3B
93.722
669
21
12
2709
3365
456110081
456110740
0.000000e+00
983.0
20
TraesCS3D01G253600
chr3B
95.455
550
23
2
3466
4014
463232730
463232182
0.000000e+00
876.0
21
TraesCS3D01G253600
chr3B
93.514
555
26
6
2875
3429
463233223
463232679
0.000000e+00
817.0
22
TraesCS3D01G253600
chr3B
92.769
567
22
5
3466
4014
456110744
456111309
0.000000e+00
802.0
23
TraesCS3D01G253600
chr3B
88.843
242
22
2
2111
2348
456109321
456109561
4.150000e-75
292.0
24
TraesCS3D01G253600
chr3B
92.258
155
12
0
4088
4242
456111391
456111545
1.990000e-53
220.0
25
TraesCS3D01G253600
chr3B
96.721
122
1
1
2712
2833
463233340
463233222
2.590000e-47
200.0
26
TraesCS3D01G253600
chr3B
92.647
136
10
0
4110
4245
463229440
463229305
3.350000e-46
196.0
27
TraesCS3D01G253600
chr3B
93.651
126
7
1
1929
2053
463234162
463234037
2.020000e-43
187.0
28
TraesCS3D01G253600
chr3B
93.671
79
4
1
4021
4098
456111290
456111368
2.680000e-22
117.0
29
TraesCS3D01G253600
chr3B
96.552
58
1
1
2111
2168
463234036
463233980
1.260000e-15
95.3
30
TraesCS3D01G253600
chr3B
96.429
56
2
0
4021
4076
463232201
463232146
4.520000e-15
93.5
31
TraesCS3D01G253600
chr3B
95.349
43
2
0
4059
4101
673098874
673098832
7.620000e-08
69.4
32
TraesCS3D01G253600
chr3B
97.222
36
1
0
3431
3466
463232828
463232793
1.280000e-05
62.1
33
TraesCS3D01G253600
chr1A
90.710
732
42
10
4
712
456207910
456208638
0.000000e+00
952.0
34
TraesCS3D01G253600
chr1A
92.683
41
3
0
4060
4100
580426338
580426298
4.590000e-05
60.2
35
TraesCS3D01G253600
chr5A
90.082
736
46
10
1
712
52879768
52879036
0.000000e+00
929.0
36
TraesCS3D01G253600
chr5A
87.566
756
47
13
1
712
597426120
597425368
0.000000e+00
832.0
37
TraesCS3D01G253600
chr6A
88.905
676
49
10
1
653
415102419
415101747
0.000000e+00
809.0
38
TraesCS3D01G253600
chr2A
87.135
754
48
18
4
712
590789042
590788293
0.000000e+00
809.0
39
TraesCS3D01G253600
chr2B
86.648
719
76
17
4
712
284955806
284956514
0.000000e+00
778.0
40
TraesCS3D01G253600
chr2B
85.257
719
82
19
4
709
88679811
88680518
0.000000e+00
719.0
41
TraesCS3D01G253600
chr2B
84.064
684
80
21
40
712
799326423
799327088
2.150000e-177
632.0
42
TraesCS3D01G253600
chr2B
90.265
113
8
2
602
711
799857156
799857268
1.230000e-30
145.0
43
TraesCS3D01G253600
chr4B
85.889
737
69
17
4
712
601963753
601964482
0.000000e+00
752.0
44
TraesCS3D01G253600
chr7A
89.189
444
47
1
2249
2692
16106012
16106454
1.730000e-153
553.0
45
TraesCS3D01G253600
chr7A
88.964
444
48
1
2249
2692
16086728
16087170
8.030000e-152
547.0
46
TraesCS3D01G253600
chr7A
88.462
442
46
2
2251
2692
81683186
81682750
2.910000e-146
529.0
47
TraesCS3D01G253600
chr7A
87.919
447
46
4
2249
2692
221167150
221166709
1.750000e-143
520.0
48
TraesCS3D01G253600
chr6B
87.783
442
49
3
2251
2692
12834315
12833879
2.930000e-141
512.0
49
TraesCS3D01G253600
chr4A
95.000
40
1
1
4060
4098
640104133
640104172
1.280000e-05
62.1
50
TraesCS3D01G253600
chr1D
93.023
43
1
1
4059
4099
372551669
372551627
1.280000e-05
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G253600
chr3D
355172584
355176830
4246
False
1620.480000
7843
98.888800
1
4247
5
chr3D.!!$F1
4246
1
TraesCS3D01G253600
chr3A
477705990
477711307
5317
True
786.000000
2990
92.822714
817
4245
7
chr3A.!!$R2
3428
2
TraesCS3D01G253600
chr3B
456107733
456111545
3812
False
702.833333
1803
92.676333
747
4242
6
chr3B.!!$F1
3495
3
TraesCS3D01G253600
chr3B
463229305
463235706
6401
True
528.890000
1740
94.896900
764
4245
10
chr3B.!!$R2
3481
4
TraesCS3D01G253600
chr1A
456207910
456208638
728
False
952.000000
952
90.710000
4
712
1
chr1A.!!$F1
708
5
TraesCS3D01G253600
chr5A
52879036
52879768
732
True
929.000000
929
90.082000
1
712
1
chr5A.!!$R1
711
6
TraesCS3D01G253600
chr5A
597425368
597426120
752
True
832.000000
832
87.566000
1
712
1
chr5A.!!$R2
711
7
TraesCS3D01G253600
chr6A
415101747
415102419
672
True
809.000000
809
88.905000
1
653
1
chr6A.!!$R1
652
8
TraesCS3D01G253600
chr2A
590788293
590789042
749
True
809.000000
809
87.135000
4
712
1
chr2A.!!$R1
708
9
TraesCS3D01G253600
chr2B
284955806
284956514
708
False
778.000000
778
86.648000
4
712
1
chr2B.!!$F2
708
10
TraesCS3D01G253600
chr2B
88679811
88680518
707
False
719.000000
719
85.257000
4
709
1
chr2B.!!$F1
705
11
TraesCS3D01G253600
chr2B
799326423
799327088
665
False
632.000000
632
84.064000
40
712
1
chr2B.!!$F3
672
12
TraesCS3D01G253600
chr4B
601963753
601964482
729
False
752.000000
752
85.889000
4
712
1
chr4B.!!$F1
708
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
899
1187
0.179012
GTAGCGGAGGAGCCTCTACT
60.179
60.0
15.64
14.48
46.71
2.57
F
1585
1887
0.111061
AGGTGCTGCCAATCTCACAA
59.889
50.0
0.00
0.00
40.61
3.33
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1926
2601
1.266989
GCTAATGGCCGCATTAAGTCC
59.733
52.381
0.0
0.0
34.27
3.85
R
3441
4419
0.034059
ACTTGCAGAGGTCCAGAACG
59.966
55.000
0.0
0.0
0.00
3.95
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
237
346
6.287525
ACCAATGAACAATTTTCAAATCCGT
58.712
32.000
7.01
0.00
31.55
4.69
443
719
9.883142
AAAATGGTGAACTAGTTTTCAAAATCA
57.117
25.926
10.02
0.00
37.24
2.57
532
808
6.803320
TCACTGAATAACGGTTAAGTAGAACG
59.197
38.462
4.47
0.00
35.72
3.95
607
883
3.675698
GGACAGAAAGAAGTGTGATCGTC
59.324
47.826
0.00
0.00
0.00
4.20
648
930
5.957304
TCGCAAATTTTCACGTTCATTTTC
58.043
33.333
0.00
0.00
0.00
2.29
717
1001
3.255379
GCTTCGAGCGCCGGTTAG
61.255
66.667
16.35
12.47
39.14
2.34
718
1002
2.582498
CTTCGAGCGCCGGTTAGG
60.582
66.667
16.35
0.00
44.97
2.69
719
1003
3.060020
CTTCGAGCGCCGGTTAGGA
62.060
63.158
16.35
0.00
45.00
2.94
720
1004
2.938539
CTTCGAGCGCCGGTTAGGAG
62.939
65.000
16.35
0.00
45.00
3.69
740
1024
1.679898
CCCCCGAATAGGATCCAGC
59.320
63.158
15.82
0.00
45.00
4.85
741
1025
1.679898
CCCCGAATAGGATCCAGCC
59.320
63.158
15.82
0.00
45.00
4.85
742
1026
1.679898
CCCGAATAGGATCCAGCCC
59.320
63.158
15.82
0.00
45.00
5.19
743
1027
0.838122
CCCGAATAGGATCCAGCCCT
60.838
60.000
15.82
0.00
45.00
5.19
744
1028
1.552486
CCCGAATAGGATCCAGCCCTA
60.552
57.143
15.82
0.00
45.00
3.53
745
1029
2.257207
CCGAATAGGATCCAGCCCTAA
58.743
52.381
15.82
0.00
45.00
2.69
757
1041
6.071896
GGATCCAGCCCTAATTATTTACAAGC
60.072
42.308
6.95
0.00
0.00
4.01
760
1044
7.579105
TCCAGCCCTAATTATTTACAAGCTTA
58.421
34.615
0.00
0.00
0.00
3.09
896
1184
2.517402
CGTAGCGGAGGAGCCTCT
60.517
66.667
15.64
0.00
42.38
3.69
897
1185
1.227883
CGTAGCGGAGGAGCCTCTA
60.228
63.158
15.64
0.00
42.38
2.43
898
1186
1.508808
CGTAGCGGAGGAGCCTCTAC
61.509
65.000
15.64
9.68
46.74
2.59
899
1187
0.179012
GTAGCGGAGGAGCCTCTACT
60.179
60.000
15.64
14.48
46.71
2.57
901
1189
0.179012
AGCGGAGGAGCCTCTACTAC
60.179
60.000
15.64
0.00
42.38
2.73
975
1273
1.740664
GAGGAAACCGGCGAAGGAC
60.741
63.158
9.30
0.00
34.73
3.85
1265
1563
1.684049
AGCGTCAGGAGGAGGAAGG
60.684
63.158
0.00
0.00
33.18
3.46
1338
1636
2.158519
GGACAAGGGAGGTGAAGGAAAA
60.159
50.000
0.00
0.00
0.00
2.29
1518
1820
2.193536
GGGCAAAACGCTGGTGTCT
61.194
57.895
0.00
0.00
41.91
3.41
1585
1887
0.111061
AGGTGCTGCCAATCTCACAA
59.889
50.000
0.00
0.00
40.61
3.33
1588
1890
2.754552
GGTGCTGCCAATCTCACAATTA
59.245
45.455
0.00
0.00
37.17
1.40
1639
1941
6.064060
TGCTCGAATCCCAGATTTGAATATT
58.936
36.000
8.28
0.00
0.00
1.28
1926
2601
1.003233
GTTGAGGGGGAGTGTACCTTG
59.997
57.143
0.00
0.00
34.02
3.61
1990
2665
0.951558
ATTGTGTGGGACTTGCGAAC
59.048
50.000
0.00
0.00
0.00
3.95
2351
3318
9.979578
CTATCTAGCAATTCAGATCAGTAGTTT
57.020
33.333
0.00
0.00
33.58
2.66
2624
3591
3.947196
TGAACACTTGAATTCAGCACAGT
59.053
39.130
8.41
6.47
31.29
3.55
2769
3736
2.447443
ACTGTCCATAGTCTGAAGCGA
58.553
47.619
0.00
0.00
0.00
4.93
2852
3819
4.058817
CGAGTCTATTACAATCCCTTGCC
58.941
47.826
0.00
0.00
35.69
4.52
3014
3981
3.063861
TGAGTTTGATATGTCGCACATGC
59.936
43.478
10.77
0.00
39.53
4.06
3064
4038
5.865013
CACATGCAAGTGCTGAATAATTTGA
59.135
36.000
9.41
0.00
42.66
2.69
3119
4097
6.670077
TTTTTCCCTGTTTAATTTGCACAC
57.330
33.333
0.00
0.00
0.00
3.82
3204
4182
4.265073
AGACATTCAGCAAATCAGTACCC
58.735
43.478
0.00
0.00
0.00
3.69
3220
4198
2.237751
CCCGCAATAGAAGACGCCG
61.238
63.158
0.00
0.00
0.00
6.46
3266
4244
3.454082
TGAAAGGATGCCACAAAAACCTT
59.546
39.130
0.00
0.00
39.05
3.50
3365
4343
8.688151
ACTAGAGTTCATCTGGACTTGTATAAC
58.312
37.037
0.00
0.00
38.78
1.89
3367
4345
5.661458
AGTTCATCTGGACTTGTATAACGG
58.339
41.667
0.00
0.00
0.00
4.44
3368
4346
4.665833
TCATCTGGACTTGTATAACGGG
57.334
45.455
0.00
0.00
0.00
5.28
3369
4347
2.973694
TCTGGACTTGTATAACGGGC
57.026
50.000
0.00
0.00
0.00
6.13
3370
4348
1.483415
TCTGGACTTGTATAACGGGCC
59.517
52.381
0.00
0.00
0.00
5.80
3371
4349
0.542805
TGGACTTGTATAACGGGCCC
59.457
55.000
13.57
13.57
0.00
5.80
3372
4350
0.835276
GGACTTGTATAACGGGCCCT
59.165
55.000
22.43
4.01
0.00
5.19
3373
4351
1.211212
GGACTTGTATAACGGGCCCTT
59.789
52.381
22.43
15.56
0.00
3.95
3374
4352
2.435437
GGACTTGTATAACGGGCCCTTA
59.565
50.000
22.43
17.27
0.00
2.69
3375
4353
3.118298
GGACTTGTATAACGGGCCCTTAA
60.118
47.826
22.43
4.50
0.00
1.85
3376
4354
4.124970
GACTTGTATAACGGGCCCTTAAG
58.875
47.826
22.43
13.05
0.00
1.85
3377
4355
3.118149
ACTTGTATAACGGGCCCTTAAGG
60.118
47.826
22.43
15.14
39.47
2.69
3388
4366
2.640316
CCCTTAAGGCTATGGTGGAC
57.360
55.000
16.70
0.00
0.00
4.02
3389
4367
1.143073
CCCTTAAGGCTATGGTGGACC
59.857
57.143
16.70
0.00
0.00
4.46
3390
4368
1.202651
CCTTAAGGCTATGGTGGACCG
60.203
57.143
9.00
0.00
39.43
4.79
3391
4369
1.760613
CTTAAGGCTATGGTGGACCGA
59.239
52.381
0.00
0.00
39.43
4.69
3392
4370
1.868713
TAAGGCTATGGTGGACCGAA
58.131
50.000
0.00
0.00
39.43
4.30
3393
4371
0.541863
AAGGCTATGGTGGACCGAAG
59.458
55.000
0.00
0.00
39.43
3.79
3394
4372
0.617820
AGGCTATGGTGGACCGAAGT
60.618
55.000
0.00
0.00
39.43
3.01
3395
4373
1.117150
GGCTATGGTGGACCGAAGTA
58.883
55.000
0.00
0.00
39.43
2.24
3396
4374
1.202498
GGCTATGGTGGACCGAAGTAC
60.202
57.143
0.00
0.00
39.43
2.73
3397
4375
1.202498
GCTATGGTGGACCGAAGTACC
60.202
57.143
0.00
0.00
39.43
3.34
3398
4376
1.066605
CTATGGTGGACCGAAGTACCG
59.933
57.143
0.00
0.00
39.43
4.02
3408
4386
1.742761
CGAAGTACCGGACCTACTGA
58.257
55.000
9.46
0.00
0.00
3.41
3409
4387
2.295885
CGAAGTACCGGACCTACTGAT
58.704
52.381
9.46
0.00
0.00
2.90
3410
4388
2.033049
CGAAGTACCGGACCTACTGATG
59.967
54.545
9.46
0.00
0.00
3.07
3411
4389
2.822707
AGTACCGGACCTACTGATGT
57.177
50.000
9.46
0.00
0.00
3.06
3412
4390
2.376109
AGTACCGGACCTACTGATGTG
58.624
52.381
9.46
0.00
0.00
3.21
3413
4391
2.097825
GTACCGGACCTACTGATGTGT
58.902
52.381
9.46
0.00
0.00
3.72
3414
4392
0.895530
ACCGGACCTACTGATGTGTG
59.104
55.000
9.46
0.00
0.00
3.82
3415
4393
0.460284
CCGGACCTACTGATGTGTGC
60.460
60.000
0.00
0.00
0.00
4.57
3416
4394
0.532573
CGGACCTACTGATGTGTGCT
59.467
55.000
0.00
0.00
0.00
4.40
3417
4395
1.737029
CGGACCTACTGATGTGTGCTG
60.737
57.143
0.00
0.00
0.00
4.41
3418
4396
1.406069
GGACCTACTGATGTGTGCTGG
60.406
57.143
0.00
0.00
0.00
4.85
3419
4397
0.615331
ACCTACTGATGTGTGCTGGG
59.385
55.000
0.00
0.00
0.00
4.45
3420
4398
0.615331
CCTACTGATGTGTGCTGGGT
59.385
55.000
0.00
0.00
0.00
4.51
3421
4399
1.831106
CCTACTGATGTGTGCTGGGTA
59.169
52.381
0.00
0.00
0.00
3.69
3422
4400
2.159043
CCTACTGATGTGTGCTGGGTAG
60.159
54.545
0.00
0.00
0.00
3.18
3423
4401
1.644509
ACTGATGTGTGCTGGGTAGA
58.355
50.000
0.00
0.00
0.00
2.59
3424
4402
1.276421
ACTGATGTGTGCTGGGTAGAC
59.724
52.381
0.00
0.00
0.00
2.59
3425
4403
1.276138
CTGATGTGTGCTGGGTAGACA
59.724
52.381
0.00
0.00
0.00
3.41
3426
4404
1.276138
TGATGTGTGCTGGGTAGACAG
59.724
52.381
0.00
0.00
41.41
3.51
3427
4405
1.276421
GATGTGTGCTGGGTAGACAGT
59.724
52.381
0.00
0.00
40.59
3.55
3428
4406
1.128200
TGTGTGCTGGGTAGACAGTT
58.872
50.000
0.00
0.00
40.59
3.16
3429
4407
1.070134
TGTGTGCTGGGTAGACAGTTC
59.930
52.381
0.00
0.00
40.59
3.01
3430
4408
1.070134
GTGTGCTGGGTAGACAGTTCA
59.930
52.381
0.00
0.00
40.59
3.18
3431
4409
1.977854
TGTGCTGGGTAGACAGTTCAT
59.022
47.619
0.00
0.00
40.59
2.57
3432
4410
2.028112
TGTGCTGGGTAGACAGTTCATC
60.028
50.000
0.00
0.00
40.59
2.92
3433
4411
2.234908
GTGCTGGGTAGACAGTTCATCT
59.765
50.000
0.00
0.00
40.59
2.90
3442
4420
2.658538
CAGTTCATCTGGACGCTCG
58.341
57.895
0.00
0.00
40.23
5.03
3443
4421
0.109086
CAGTTCATCTGGACGCTCGT
60.109
55.000
0.00
0.00
40.23
4.18
3444
4422
0.603569
AGTTCATCTGGACGCTCGTT
59.396
50.000
0.00
0.00
0.00
3.85
3445
4423
0.992802
GTTCATCTGGACGCTCGTTC
59.007
55.000
0.00
0.00
0.00
3.95
3446
4424
0.888619
TTCATCTGGACGCTCGTTCT
59.111
50.000
2.18
0.00
0.00
3.01
3447
4425
0.171231
TCATCTGGACGCTCGTTCTG
59.829
55.000
2.18
1.96
0.00
3.02
3448
4426
0.803768
CATCTGGACGCTCGTTCTGG
60.804
60.000
7.56
0.00
0.00
3.86
3449
4427
0.965866
ATCTGGACGCTCGTTCTGGA
60.966
55.000
7.56
4.22
0.00
3.86
3450
4428
1.444553
CTGGACGCTCGTTCTGGAC
60.445
63.158
2.18
0.00
0.00
4.02
3451
4429
2.126031
GGACGCTCGTTCTGGACC
60.126
66.667
0.00
0.00
0.00
4.46
3452
4430
2.637383
GGACGCTCGTTCTGGACCT
61.637
63.158
0.00
0.00
0.00
3.85
3453
4431
1.153997
GACGCTCGTTCTGGACCTC
60.154
63.158
0.00
0.00
0.00
3.85
3454
4432
1.587933
GACGCTCGTTCTGGACCTCT
61.588
60.000
0.00
0.00
0.00
3.69
3455
4433
1.153939
CGCTCGTTCTGGACCTCTG
60.154
63.158
0.00
0.00
0.00
3.35
3456
4434
1.446966
GCTCGTTCTGGACCTCTGC
60.447
63.158
0.00
0.00
0.00
4.26
3457
4435
1.967535
CTCGTTCTGGACCTCTGCA
59.032
57.895
0.00
0.00
0.00
4.41
3458
4436
0.318441
CTCGTTCTGGACCTCTGCAA
59.682
55.000
0.00
0.00
0.00
4.08
3459
4437
0.318441
TCGTTCTGGACCTCTGCAAG
59.682
55.000
0.00
0.00
0.00
4.01
3460
4438
0.034059
CGTTCTGGACCTCTGCAAGT
59.966
55.000
0.00
0.00
33.76
3.16
3461
4439
1.272490
CGTTCTGGACCTCTGCAAGTA
59.728
52.381
0.00
0.00
33.76
2.24
3462
4440
2.672478
CGTTCTGGACCTCTGCAAGTAG
60.672
54.545
0.00
0.00
33.76
2.57
3463
4441
2.563179
GTTCTGGACCTCTGCAAGTAGA
59.437
50.000
0.00
0.00
33.76
2.59
3464
4442
2.451490
TCTGGACCTCTGCAAGTAGAG
58.549
52.381
8.04
8.04
43.04
2.43
3499
4477
1.772836
GGTACCGGACCTACTGATGT
58.227
55.000
9.46
0.00
45.89
3.06
3614
4592
8.462016
GTGCTGTTTAATTGTCCTTTCTGATAT
58.538
33.333
0.00
0.00
0.00
1.63
3702
4698
4.142687
CGGTTTCGGCTCAAGTTAAATCAT
60.143
41.667
0.00
0.00
0.00
2.45
3703
4699
5.619086
CGGTTTCGGCTCAAGTTAAATCATT
60.619
40.000
0.00
0.00
0.00
2.57
3814
4810
3.756727
GCTGCTGCAGGGAAAGCC
61.757
66.667
29.05
8.48
38.71
4.35
3883
4879
1.071542
TCGGCTTGAACATGGAAGACA
59.928
47.619
0.00
0.00
0.00
3.41
3884
4880
1.879380
CGGCTTGAACATGGAAGACAA
59.121
47.619
0.00
0.00
0.00
3.18
3949
4945
5.952347
ACAAGATAGTACATGACTGACAGGA
59.048
40.000
7.51
0.00
39.39
3.86
4007
5003
6.749923
AAGAGCTTTACTATTTCTTGCAGG
57.250
37.500
0.00
0.00
0.00
4.85
4008
5004
6.054860
AGAGCTTTACTATTTCTTGCAGGA
57.945
37.500
0.00
0.00
0.00
3.86
4009
5005
6.476378
AGAGCTTTACTATTTCTTGCAGGAA
58.524
36.000
7.24
7.24
0.00
3.36
4010
5006
7.115414
AGAGCTTTACTATTTCTTGCAGGAAT
58.885
34.615
12.50
5.55
0.00
3.01
4011
5007
7.613411
AGAGCTTTACTATTTCTTGCAGGAATT
59.387
33.333
12.50
11.26
0.00
2.17
4012
5008
8.127150
AGCTTTACTATTTCTTGCAGGAATTT
57.873
30.769
12.50
5.99
0.00
1.82
4013
5009
8.588472
AGCTTTACTATTTCTTGCAGGAATTTT
58.412
29.630
12.50
3.57
0.00
1.82
4014
5010
9.208022
GCTTTACTATTTCTTGCAGGAATTTTT
57.792
29.630
12.50
0.82
0.00
1.94
4082
7095
6.320926
GGTACTCTCTCCGTCCTAAAATAAGT
59.679
42.308
0.00
0.00
0.00
2.24
4134
7963
8.996024
TGATCTAAGACGTATTTCAATGTTGA
57.004
30.769
0.00
0.00
34.92
3.18
4166
7995
7.828717
TCAATCTGAGCAACAACTAATATGGAA
59.171
33.333
0.00
0.00
0.00
3.53
4184
8013
3.135167
TGGAACGGAGTCCAAAAGTAAGT
59.865
43.478
10.49
0.00
45.00
2.24
4242
8071
1.657094
CAATGCCGCATGCTTTTCTTC
59.343
47.619
17.13
0.00
42.00
2.87
4245
8074
1.074872
GCCGCATGCTTTTCTTCTGC
61.075
55.000
17.13
0.67
36.87
4.26
4246
8075
0.241749
CCGCATGCTTTTCTTCTGCA
59.758
50.000
17.13
0.00
41.13
4.41
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
214
323
6.783892
ACGGATTTGAAAATTGTTCATTGG
57.216
33.333
0.00
0.00
0.00
3.16
532
808
8.657729
GTTCTTATGTTCTGTAGCTAGGAAAAC
58.342
37.037
9.73
6.13
0.00
2.43
607
883
2.688364
GAAAGCTGGGTTTCGAACTG
57.312
50.000
0.00
0.00
0.00
3.16
648
930
2.464189
CGAAAACCACGACGCGAG
59.536
61.111
15.93
9.24
0.00
5.03
722
1006
1.679898
GCTGGATCCTATTCGGGGG
59.320
63.158
14.23
0.00
0.00
5.40
723
1007
1.679898
GGCTGGATCCTATTCGGGG
59.320
63.158
14.23
0.00
0.00
5.73
724
1008
0.838122
AGGGCTGGATCCTATTCGGG
60.838
60.000
14.23
0.00
31.86
5.14
725
1009
1.938585
TAGGGCTGGATCCTATTCGG
58.061
55.000
14.23
0.00
35.92
4.30
726
1010
4.559862
AATTAGGGCTGGATCCTATTCG
57.440
45.455
14.23
0.00
36.81
3.34
727
1011
9.397280
GTAAATAATTAGGGCTGGATCCTATTC
57.603
37.037
14.23
0.50
36.81
1.75
728
1012
8.900802
TGTAAATAATTAGGGCTGGATCCTATT
58.099
33.333
14.23
2.44
36.81
1.73
729
1013
8.463055
TGTAAATAATTAGGGCTGGATCCTAT
57.537
34.615
14.23
0.00
36.81
2.57
730
1014
7.881912
TGTAAATAATTAGGGCTGGATCCTA
57.118
36.000
14.23
0.00
35.92
2.94
731
1015
6.780198
TGTAAATAATTAGGGCTGGATCCT
57.220
37.500
14.23
0.00
38.36
3.24
732
1016
6.071896
GCTTGTAAATAATTAGGGCTGGATCC
60.072
42.308
4.20
4.20
0.00
3.36
733
1017
6.717084
AGCTTGTAAATAATTAGGGCTGGATC
59.283
38.462
0.00
0.00
0.00
3.36
734
1018
6.614657
AGCTTGTAAATAATTAGGGCTGGAT
58.385
36.000
0.00
0.00
0.00
3.41
735
1019
6.013554
AGCTTGTAAATAATTAGGGCTGGA
57.986
37.500
0.00
0.00
0.00
3.86
736
1020
6.715347
AAGCTTGTAAATAATTAGGGCTGG
57.285
37.500
0.00
0.00
0.00
4.85
738
1022
9.232473
GCTATAAGCTTGTAAATAATTAGGGCT
57.768
33.333
9.86
0.00
38.45
5.19
739
1023
9.010029
TGCTATAAGCTTGTAAATAATTAGGGC
57.990
33.333
9.86
3.25
42.97
5.19
953
1250
3.894547
TTCGCCGGTTTCCTCCTGC
62.895
63.158
1.90
0.00
35.00
4.85
1265
1563
0.758123
CTCCTCATCCTCTTCCTGCC
59.242
60.000
0.00
0.00
0.00
4.85
1338
1636
4.401519
TCTCCATTATCGTCGAACTCCTTT
59.598
41.667
0.00
0.00
0.00
3.11
1518
1820
3.562973
CCTTGAAGTAGTACTCGCGGATA
59.437
47.826
6.13
0.00
0.00
2.59
1575
1877
7.639072
CGAGCTCAAGAAATAATTGTGAGATTG
59.361
37.037
15.40
0.00
0.00
2.67
1585
1887
5.762218
CCAATCCTCGAGCTCAAGAAATAAT
59.238
40.000
15.40
0.00
0.00
1.28
1588
1890
3.198635
TCCAATCCTCGAGCTCAAGAAAT
59.801
43.478
15.40
0.00
0.00
2.17
1639
1941
3.795150
GCCATTCGAACTGAGCAAAACAA
60.795
43.478
0.00
0.00
0.00
2.83
1926
2601
1.266989
GCTAATGGCCGCATTAAGTCC
59.733
52.381
0.00
0.00
34.27
3.85
2529
3496
5.187772
ACAGATACATGAACCTACTCTTGCA
59.812
40.000
0.00
0.00
0.00
4.08
2710
3677
3.299503
AGCAACATGACAAAGGAAACCT
58.700
40.909
0.00
0.00
33.87
3.50
2852
3819
4.181578
CTGACCCCTTCAGTAAACATACG
58.818
47.826
0.00
0.00
46.12
3.06
3014
3981
9.546909
GAATGCCAATAAAGATGACATAATACG
57.453
33.333
0.00
0.00
0.00
3.06
3021
3988
6.566141
CATGTGAATGCCAATAAAGATGACA
58.434
36.000
0.00
0.00
0.00
3.58
3064
4038
0.109342
AAGGCAGCAGCTACAACACT
59.891
50.000
0.00
0.00
41.70
3.55
3101
4079
3.320541
TGGAGTGTGCAAATTAAACAGGG
59.679
43.478
0.00
0.00
0.00
4.45
3104
4082
6.577103
TGAAATGGAGTGTGCAAATTAAACA
58.423
32.000
0.00
0.00
0.00
2.83
3113
4091
3.379057
CAGCATATGAAATGGAGTGTGCA
59.621
43.478
6.97
0.00
34.01
4.57
3114
4092
3.628942
TCAGCATATGAAATGGAGTGTGC
59.371
43.478
6.97
0.00
34.02
4.57
3115
4093
4.036027
GGTCAGCATATGAAATGGAGTGTG
59.964
45.833
6.97
0.00
40.43
3.82
3116
4094
4.080129
AGGTCAGCATATGAAATGGAGTGT
60.080
41.667
6.97
0.00
40.43
3.55
3117
4095
4.275196
CAGGTCAGCATATGAAATGGAGTG
59.725
45.833
6.97
0.00
40.43
3.51
3118
4096
4.458397
CAGGTCAGCATATGAAATGGAGT
58.542
43.478
6.97
0.00
40.43
3.85
3119
4097
3.252701
GCAGGTCAGCATATGAAATGGAG
59.747
47.826
6.97
0.00
40.43
3.86
3204
4182
0.800683
TGACGGCGTCTTCTATTGCG
60.801
55.000
36.17
0.00
33.15
4.85
3220
4198
6.566197
ATCTGATTCTCCAAGTGTTTTGAC
57.434
37.500
0.00
0.00
0.00
3.18
3266
4244
3.168963
CAGAACGAGCGTCGAGATTTTA
58.831
45.455
13.06
0.00
43.74
1.52
3369
4347
1.143073
GGTCCACCATAGCCTTAAGGG
59.857
57.143
23.06
8.32
35.64
3.95
3370
4348
1.202651
CGGTCCACCATAGCCTTAAGG
60.203
57.143
17.81
17.81
35.14
2.69
3371
4349
1.760613
TCGGTCCACCATAGCCTTAAG
59.239
52.381
0.00
0.00
35.14
1.85
3372
4350
1.868713
TCGGTCCACCATAGCCTTAA
58.131
50.000
0.00
0.00
35.14
1.85
3373
4351
1.760613
CTTCGGTCCACCATAGCCTTA
59.239
52.381
0.00
0.00
35.14
2.69
3374
4352
0.541863
CTTCGGTCCACCATAGCCTT
59.458
55.000
0.00
0.00
35.14
4.35
3375
4353
0.617820
ACTTCGGTCCACCATAGCCT
60.618
55.000
0.00
0.00
35.14
4.58
3376
4354
1.117150
TACTTCGGTCCACCATAGCC
58.883
55.000
0.00
0.00
35.14
3.93
3377
4355
1.202498
GGTACTTCGGTCCACCATAGC
60.202
57.143
0.00
0.00
35.14
2.97
3378
4356
1.066605
CGGTACTTCGGTCCACCATAG
59.933
57.143
0.00
0.00
35.14
2.23
3379
4357
1.105457
CGGTACTTCGGTCCACCATA
58.895
55.000
0.00
0.00
35.14
2.74
3380
4358
1.610554
CCGGTACTTCGGTCCACCAT
61.611
60.000
0.00
0.00
44.60
3.55
3381
4359
2.277591
CCGGTACTTCGGTCCACCA
61.278
63.158
0.00
0.00
44.60
4.17
3382
4360
2.575461
CCGGTACTTCGGTCCACC
59.425
66.667
0.00
0.00
44.60
4.61
3389
4367
1.742761
TCAGTAGGTCCGGTACTTCG
58.257
55.000
0.00
0.00
0.00
3.79
3390
4368
3.022406
ACATCAGTAGGTCCGGTACTTC
58.978
50.000
0.00
0.00
0.00
3.01
3391
4369
2.758979
CACATCAGTAGGTCCGGTACTT
59.241
50.000
0.00
0.00
0.00
2.24
3392
4370
2.291411
ACACATCAGTAGGTCCGGTACT
60.291
50.000
0.00
3.32
0.00
2.73
3393
4371
2.097825
ACACATCAGTAGGTCCGGTAC
58.902
52.381
0.00
0.00
0.00
3.34
3394
4372
2.097036
CACACATCAGTAGGTCCGGTA
58.903
52.381
0.00
0.00
0.00
4.02
3395
4373
0.895530
CACACATCAGTAGGTCCGGT
59.104
55.000
0.00
0.00
0.00
5.28
3396
4374
0.460284
GCACACATCAGTAGGTCCGG
60.460
60.000
0.00
0.00
0.00
5.14
3397
4375
0.532573
AGCACACATCAGTAGGTCCG
59.467
55.000
0.00
0.00
0.00
4.79
3398
4376
1.406069
CCAGCACACATCAGTAGGTCC
60.406
57.143
0.00
0.00
0.00
4.46
3399
4377
1.406069
CCCAGCACACATCAGTAGGTC
60.406
57.143
0.00
0.00
0.00
3.85
3400
4378
0.615331
CCCAGCACACATCAGTAGGT
59.385
55.000
0.00
0.00
0.00
3.08
3401
4379
0.615331
ACCCAGCACACATCAGTAGG
59.385
55.000
0.00
0.00
0.00
3.18
3402
4380
2.760650
TCTACCCAGCACACATCAGTAG
59.239
50.000
0.00
0.00
0.00
2.57
3403
4381
2.496070
GTCTACCCAGCACACATCAGTA
59.504
50.000
0.00
0.00
0.00
2.74
3404
4382
1.276421
GTCTACCCAGCACACATCAGT
59.724
52.381
0.00
0.00
0.00
3.41
3405
4383
1.276138
TGTCTACCCAGCACACATCAG
59.724
52.381
0.00
0.00
0.00
2.90
3406
4384
1.276138
CTGTCTACCCAGCACACATCA
59.724
52.381
0.00
0.00
0.00
3.07
3407
4385
1.276421
ACTGTCTACCCAGCACACATC
59.724
52.381
0.00
0.00
35.83
3.06
3408
4386
1.352083
ACTGTCTACCCAGCACACAT
58.648
50.000
0.00
0.00
35.83
3.21
3409
4387
1.070134
GAACTGTCTACCCAGCACACA
59.930
52.381
0.00
0.00
35.83
3.72
3410
4388
1.070134
TGAACTGTCTACCCAGCACAC
59.930
52.381
0.00
0.00
35.83
3.82
3411
4389
1.419381
TGAACTGTCTACCCAGCACA
58.581
50.000
0.00
0.00
35.83
4.57
3412
4390
2.234908
AGATGAACTGTCTACCCAGCAC
59.765
50.000
0.00
0.00
35.83
4.40
3413
4391
2.234661
CAGATGAACTGTCTACCCAGCA
59.765
50.000
0.00
0.00
41.30
4.41
3414
4392
2.419297
CCAGATGAACTGTCTACCCAGC
60.419
54.545
0.00
0.00
44.40
4.85
3415
4393
3.099905
TCCAGATGAACTGTCTACCCAG
58.900
50.000
0.00
0.00
44.40
4.45
3416
4394
2.832129
GTCCAGATGAACTGTCTACCCA
59.168
50.000
0.00
0.00
44.40
4.51
3417
4395
2.159226
CGTCCAGATGAACTGTCTACCC
60.159
54.545
0.00
0.00
44.40
3.69
3418
4396
2.735762
GCGTCCAGATGAACTGTCTACC
60.736
54.545
0.00
0.00
44.40
3.18
3419
4397
2.164624
AGCGTCCAGATGAACTGTCTAC
59.835
50.000
0.00
0.00
44.40
2.59
3420
4398
2.423892
GAGCGTCCAGATGAACTGTCTA
59.576
50.000
0.00
0.00
44.40
2.59
3421
4399
1.203523
GAGCGTCCAGATGAACTGTCT
59.796
52.381
0.00
0.00
44.40
3.41
3422
4400
1.634702
GAGCGTCCAGATGAACTGTC
58.365
55.000
0.00
0.00
44.40
3.51
3423
4401
0.109086
CGAGCGTCCAGATGAACTGT
60.109
55.000
0.00
0.00
44.40
3.55
3424
4402
0.109086
ACGAGCGTCCAGATGAACTG
60.109
55.000
0.00
0.00
45.36
3.16
3425
4403
0.603569
AACGAGCGTCCAGATGAACT
59.396
50.000
0.00
0.00
0.00
3.01
3426
4404
0.992802
GAACGAGCGTCCAGATGAAC
59.007
55.000
0.00
0.00
0.00
3.18
3427
4405
0.888619
AGAACGAGCGTCCAGATGAA
59.111
50.000
0.00
0.00
0.00
2.57
3428
4406
0.171231
CAGAACGAGCGTCCAGATGA
59.829
55.000
0.00
0.00
0.00
2.92
3429
4407
0.803768
CCAGAACGAGCGTCCAGATG
60.804
60.000
0.00
0.00
0.00
2.90
3430
4408
0.965866
TCCAGAACGAGCGTCCAGAT
60.966
55.000
0.00
0.00
0.00
2.90
3431
4409
1.602605
TCCAGAACGAGCGTCCAGA
60.603
57.895
0.00
0.00
0.00
3.86
3432
4410
1.444553
GTCCAGAACGAGCGTCCAG
60.445
63.158
0.00
0.00
0.00
3.86
3433
4411
2.649034
GTCCAGAACGAGCGTCCA
59.351
61.111
0.00
0.00
0.00
4.02
3434
4412
2.126031
GGTCCAGAACGAGCGTCC
60.126
66.667
0.00
0.00
0.00
4.79
3435
4413
1.153997
GAGGTCCAGAACGAGCGTC
60.154
63.158
0.00
0.00
35.40
5.19
3436
4414
1.604023
AGAGGTCCAGAACGAGCGT
60.604
57.895
0.00
0.00
35.40
5.07
3437
4415
1.153939
CAGAGGTCCAGAACGAGCG
60.154
63.158
0.00
0.00
35.40
5.03
3438
4416
1.446966
GCAGAGGTCCAGAACGAGC
60.447
63.158
0.00
0.00
0.00
5.03
3439
4417
0.318441
TTGCAGAGGTCCAGAACGAG
59.682
55.000
0.00
0.00
0.00
4.18
3440
4418
0.318441
CTTGCAGAGGTCCAGAACGA
59.682
55.000
0.00
0.00
0.00
3.85
3441
4419
0.034059
ACTTGCAGAGGTCCAGAACG
59.966
55.000
0.00
0.00
0.00
3.95
3442
4420
2.563179
TCTACTTGCAGAGGTCCAGAAC
59.437
50.000
0.00
0.00
0.00
3.01
3443
4421
2.828520
CTCTACTTGCAGAGGTCCAGAA
59.171
50.000
0.00
0.00
38.74
3.02
3444
4422
2.225142
ACTCTACTTGCAGAGGTCCAGA
60.225
50.000
5.76
0.00
45.36
3.86
3445
4423
2.175202
ACTCTACTTGCAGAGGTCCAG
58.825
52.381
5.76
0.00
45.36
3.86
3446
4424
2.310779
ACTCTACTTGCAGAGGTCCA
57.689
50.000
5.76
0.00
45.36
4.02
3449
4427
2.829120
GGAGAACTCTACTTGCAGAGGT
59.171
50.000
5.76
0.00
45.43
3.85
3450
4428
2.167487
GGGAGAACTCTACTTGCAGAGG
59.833
54.545
5.76
0.00
45.36
3.69
3451
4429
3.096092
AGGGAGAACTCTACTTGCAGAG
58.904
50.000
0.00
0.00
46.31
3.35
3452
4430
3.176924
AGGGAGAACTCTACTTGCAGA
57.823
47.619
1.86
0.00
0.00
4.26
3453
4431
3.971245
AAGGGAGAACTCTACTTGCAG
57.029
47.619
9.88
0.00
0.00
4.41
3454
4432
4.417437
ACTAAGGGAGAACTCTACTTGCA
58.583
43.478
16.16
0.00
32.35
4.08
3455
4433
4.463186
TGACTAAGGGAGAACTCTACTTGC
59.537
45.833
16.16
9.80
32.35
4.01
3456
4434
6.591750
TTGACTAAGGGAGAACTCTACTTG
57.408
41.667
16.16
11.28
32.35
3.16
3457
4435
6.844097
CTTGACTAAGGGAGAACTCTACTT
57.156
41.667
13.27
13.27
33.71
2.24
3487
4465
1.406069
CCCAGCACACATCAGTAGGTC
60.406
57.143
0.00
0.00
0.00
3.85
3499
4477
1.202758
CCAAACTGTCTACCCAGCACA
60.203
52.381
0.00
0.00
35.83
4.57
3614
4592
2.880443
AGGGCCCGTTATATCTTACGA
58.120
47.619
18.44
0.00
40.03
3.43
3676
4655
0.179067
AACTTGAGCCGAAACCGACA
60.179
50.000
0.00
0.00
0.00
4.35
3681
4660
6.378582
TCAATGATTTAACTTGAGCCGAAAC
58.621
36.000
0.00
0.00
0.00
2.78
3702
4698
5.237048
TCGATGTGTGAACATCAAGATCAA
58.763
37.500
16.64
0.00
44.89
2.57
3703
4699
4.819769
TCGATGTGTGAACATCAAGATCA
58.180
39.130
16.64
0.00
44.89
2.92
3733
4729
6.544928
AGACTTCCAAAATCCAAACTGTTT
57.455
33.333
0.00
0.00
0.00
2.83
3814
4810
4.466370
TCCTTCCTGTAGGTGTTCATGTAG
59.534
45.833
0.00
0.00
36.63
2.74
3883
4879
1.417890
CCTGTCCTGGTCTCACTGTTT
59.582
52.381
0.00
0.00
0.00
2.83
3884
4880
1.051812
CCTGTCCTGGTCTCACTGTT
58.948
55.000
0.00
0.00
0.00
3.16
3937
4933
2.573869
CGCGGTCCTGTCAGTCAT
59.426
61.111
0.00
0.00
0.00
3.06
3949
4945
2.758327
TGGATCTACAGCCGCGGT
60.758
61.111
28.70
9.89
0.00
5.68
4015
5011
8.878769
GCAAAATCCTACAAGAAAAAGTTCAAA
58.121
29.630
0.00
0.00
36.09
2.69
4016
5012
7.494298
GGCAAAATCCTACAAGAAAAAGTTCAA
59.506
33.333
0.00
0.00
36.09
2.69
4017
5013
6.983890
GGCAAAATCCTACAAGAAAAAGTTCA
59.016
34.615
0.00
0.00
36.09
3.18
4018
5014
6.983890
TGGCAAAATCCTACAAGAAAAAGTTC
59.016
34.615
0.00
0.00
0.00
3.01
4019
5015
6.761242
GTGGCAAAATCCTACAAGAAAAAGTT
59.239
34.615
0.00
0.00
0.00
2.66
4020
5016
6.098266
AGTGGCAAAATCCTACAAGAAAAAGT
59.902
34.615
0.00
0.00
0.00
2.66
4021
5017
6.421801
CAGTGGCAAAATCCTACAAGAAAAAG
59.578
38.462
0.00
0.00
0.00
2.27
4022
5018
6.279882
CAGTGGCAAAATCCTACAAGAAAAA
58.720
36.000
0.00
0.00
0.00
1.94
4023
5019
5.221422
CCAGTGGCAAAATCCTACAAGAAAA
60.221
40.000
0.00
0.00
0.00
2.29
4024
5020
4.280677
CCAGTGGCAAAATCCTACAAGAAA
59.719
41.667
0.00
0.00
0.00
2.52
4025
5021
3.826157
CCAGTGGCAAAATCCTACAAGAA
59.174
43.478
0.00
0.00
0.00
2.52
4026
5022
3.181434
ACCAGTGGCAAAATCCTACAAGA
60.181
43.478
9.78
0.00
0.00
3.02
4027
5023
3.057315
CACCAGTGGCAAAATCCTACAAG
60.057
47.826
9.78
0.00
0.00
3.16
4108
7937
9.599866
TCAACATTGAAATACGTCTTAGATCAT
57.400
29.630
0.00
0.00
33.55
2.45
4133
7962
7.081526
AGTTGTTGCTCAGATTGATGTATTC
57.918
36.000
0.00
0.00
0.00
1.75
4134
7963
8.565896
TTAGTTGTTGCTCAGATTGATGTATT
57.434
30.769
0.00
0.00
0.00
1.89
4166
7995
5.052481
GTGTAACTTACTTTTGGACTCCGT
58.948
41.667
0.71
0.00
0.00
4.69
4184
8013
4.153475
GCTTATTTGGCTCGTCAAGTGTAA
59.847
41.667
0.00
0.00
0.00
2.41
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.