Multiple sequence alignment - TraesCS3D01G253600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G253600 chr3D 100.000 4247 0 0 1 4247 355172584 355176830 0.000000e+00 7843.0
1 TraesCS3D01G253600 chr3D 100.000 36 0 0 3482 3517 355175977 355176012 2.740000e-07 67.6
2 TraesCS3D01G253600 chr3D 100.000 36 0 0 3394 3429 355176065 355176100 2.740000e-07 67.6
3 TraesCS3D01G253600 chr3D 97.222 36 1 0 4066 4101 18728921 18728886 1.280000e-05 62.1
4 TraesCS3D01G253600 chr3D 97.222 36 1 0 3431 3466 355175854 355175889 1.280000e-05 62.1
5 TraesCS3D01G253600 chr3D 97.222 36 1 0 3271 3306 355176014 355176049 1.280000e-05 62.1
6 TraesCS3D01G253600 chr3A 98.360 1707 21 5 987 2692 477711225 477709525 0.000000e+00 2990.0
7 TraesCS3D01G253600 chr3A 91.518 731 29 18 2712 3429 477709534 477708824 0.000000e+00 976.0
8 TraesCS3D01G253600 chr3A 92.717 508 25 7 3466 3972 477708875 477708379 0.000000e+00 723.0
9 TraesCS3D01G253600 chr3A 88.688 442 45 2 2251 2692 617792492 617792056 6.250000e-148 534.0
10 TraesCS3D01G253600 chr3A 88.235 442 47 2 2251 2692 745089841 745090277 1.350000e-144 523.0
11 TraesCS3D01G253600 chr3A 92.029 276 19 1 3644 3919 477707877 477707605 6.660000e-103 385.0
12 TraesCS3D01G253600 chr3A 84.746 236 18 11 4025 4242 474068471 474068706 1.990000e-53 220.0
13 TraesCS3D01G253600 chr3A 89.873 158 11 1 4088 4245 477708152 477708000 9.310000e-47 198.0
14 TraesCS3D01G253600 chr3A 92.857 84 3 1 817 897 477711307 477711224 7.460000e-23 119.0
15 TraesCS3D01G253600 chr3A 92.405 79 5 1 4021 4098 477706068 477705990 1.250000e-20 111.0
16 TraesCS3D01G253600 chr3B 94.795 1172 35 5 747 1912 456107733 456108884 0.000000e+00 1803.0
17 TraesCS3D01G253600 chr3B 93.921 1168 45 16 764 1912 463235706 463234546 0.000000e+00 1740.0
18 TraesCS3D01G253600 chr3B 92.857 714 35 10 1992 2692 463234041 463233331 0.000000e+00 1022.0
19 TraesCS3D01G253600 chr3B 93.722 669 21 12 2709 3365 456110081 456110740 0.000000e+00 983.0
20 TraesCS3D01G253600 chr3B 95.455 550 23 2 3466 4014 463232730 463232182 0.000000e+00 876.0
21 TraesCS3D01G253600 chr3B 93.514 555 26 6 2875 3429 463233223 463232679 0.000000e+00 817.0
22 TraesCS3D01G253600 chr3B 92.769 567 22 5 3466 4014 456110744 456111309 0.000000e+00 802.0
23 TraesCS3D01G253600 chr3B 88.843 242 22 2 2111 2348 456109321 456109561 4.150000e-75 292.0
24 TraesCS3D01G253600 chr3B 92.258 155 12 0 4088 4242 456111391 456111545 1.990000e-53 220.0
25 TraesCS3D01G253600 chr3B 96.721 122 1 1 2712 2833 463233340 463233222 2.590000e-47 200.0
26 TraesCS3D01G253600 chr3B 92.647 136 10 0 4110 4245 463229440 463229305 3.350000e-46 196.0
27 TraesCS3D01G253600 chr3B 93.651 126 7 1 1929 2053 463234162 463234037 2.020000e-43 187.0
28 TraesCS3D01G253600 chr3B 93.671 79 4 1 4021 4098 456111290 456111368 2.680000e-22 117.0
29 TraesCS3D01G253600 chr3B 96.552 58 1 1 2111 2168 463234036 463233980 1.260000e-15 95.3
30 TraesCS3D01G253600 chr3B 96.429 56 2 0 4021 4076 463232201 463232146 4.520000e-15 93.5
31 TraesCS3D01G253600 chr3B 95.349 43 2 0 4059 4101 673098874 673098832 7.620000e-08 69.4
32 TraesCS3D01G253600 chr3B 97.222 36 1 0 3431 3466 463232828 463232793 1.280000e-05 62.1
33 TraesCS3D01G253600 chr1A 90.710 732 42 10 4 712 456207910 456208638 0.000000e+00 952.0
34 TraesCS3D01G253600 chr1A 92.683 41 3 0 4060 4100 580426338 580426298 4.590000e-05 60.2
35 TraesCS3D01G253600 chr5A 90.082 736 46 10 1 712 52879768 52879036 0.000000e+00 929.0
36 TraesCS3D01G253600 chr5A 87.566 756 47 13 1 712 597426120 597425368 0.000000e+00 832.0
37 TraesCS3D01G253600 chr6A 88.905 676 49 10 1 653 415102419 415101747 0.000000e+00 809.0
38 TraesCS3D01G253600 chr2A 87.135 754 48 18 4 712 590789042 590788293 0.000000e+00 809.0
39 TraesCS3D01G253600 chr2B 86.648 719 76 17 4 712 284955806 284956514 0.000000e+00 778.0
40 TraesCS3D01G253600 chr2B 85.257 719 82 19 4 709 88679811 88680518 0.000000e+00 719.0
41 TraesCS3D01G253600 chr2B 84.064 684 80 21 40 712 799326423 799327088 2.150000e-177 632.0
42 TraesCS3D01G253600 chr2B 90.265 113 8 2 602 711 799857156 799857268 1.230000e-30 145.0
43 TraesCS3D01G253600 chr4B 85.889 737 69 17 4 712 601963753 601964482 0.000000e+00 752.0
44 TraesCS3D01G253600 chr7A 89.189 444 47 1 2249 2692 16106012 16106454 1.730000e-153 553.0
45 TraesCS3D01G253600 chr7A 88.964 444 48 1 2249 2692 16086728 16087170 8.030000e-152 547.0
46 TraesCS3D01G253600 chr7A 88.462 442 46 2 2251 2692 81683186 81682750 2.910000e-146 529.0
47 TraesCS3D01G253600 chr7A 87.919 447 46 4 2249 2692 221167150 221166709 1.750000e-143 520.0
48 TraesCS3D01G253600 chr6B 87.783 442 49 3 2251 2692 12834315 12833879 2.930000e-141 512.0
49 TraesCS3D01G253600 chr4A 95.000 40 1 1 4060 4098 640104133 640104172 1.280000e-05 62.1
50 TraesCS3D01G253600 chr1D 93.023 43 1 1 4059 4099 372551669 372551627 1.280000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G253600 chr3D 355172584 355176830 4246 False 1620.480000 7843 98.888800 1 4247 5 chr3D.!!$F1 4246
1 TraesCS3D01G253600 chr3A 477705990 477711307 5317 True 786.000000 2990 92.822714 817 4245 7 chr3A.!!$R2 3428
2 TraesCS3D01G253600 chr3B 456107733 456111545 3812 False 702.833333 1803 92.676333 747 4242 6 chr3B.!!$F1 3495
3 TraesCS3D01G253600 chr3B 463229305 463235706 6401 True 528.890000 1740 94.896900 764 4245 10 chr3B.!!$R2 3481
4 TraesCS3D01G253600 chr1A 456207910 456208638 728 False 952.000000 952 90.710000 4 712 1 chr1A.!!$F1 708
5 TraesCS3D01G253600 chr5A 52879036 52879768 732 True 929.000000 929 90.082000 1 712 1 chr5A.!!$R1 711
6 TraesCS3D01G253600 chr5A 597425368 597426120 752 True 832.000000 832 87.566000 1 712 1 chr5A.!!$R2 711
7 TraesCS3D01G253600 chr6A 415101747 415102419 672 True 809.000000 809 88.905000 1 653 1 chr6A.!!$R1 652
8 TraesCS3D01G253600 chr2A 590788293 590789042 749 True 809.000000 809 87.135000 4 712 1 chr2A.!!$R1 708
9 TraesCS3D01G253600 chr2B 284955806 284956514 708 False 778.000000 778 86.648000 4 712 1 chr2B.!!$F2 708
10 TraesCS3D01G253600 chr2B 88679811 88680518 707 False 719.000000 719 85.257000 4 709 1 chr2B.!!$F1 705
11 TraesCS3D01G253600 chr2B 799326423 799327088 665 False 632.000000 632 84.064000 40 712 1 chr2B.!!$F3 672
12 TraesCS3D01G253600 chr4B 601963753 601964482 729 False 752.000000 752 85.889000 4 712 1 chr4B.!!$F1 708


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 1187 0.179012 GTAGCGGAGGAGCCTCTACT 60.179 60.0 15.64 14.48 46.71 2.57 F
1585 1887 0.111061 AGGTGCTGCCAATCTCACAA 59.889 50.0 0.00 0.00 40.61 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 2601 1.266989 GCTAATGGCCGCATTAAGTCC 59.733 52.381 0.0 0.0 34.27 3.85 R
3441 4419 0.034059 ACTTGCAGAGGTCCAGAACG 59.966 55.000 0.0 0.0 0.00 3.95 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 346 6.287525 ACCAATGAACAATTTTCAAATCCGT 58.712 32.000 7.01 0.00 31.55 4.69
443 719 9.883142 AAAATGGTGAACTAGTTTTCAAAATCA 57.117 25.926 10.02 0.00 37.24 2.57
532 808 6.803320 TCACTGAATAACGGTTAAGTAGAACG 59.197 38.462 4.47 0.00 35.72 3.95
607 883 3.675698 GGACAGAAAGAAGTGTGATCGTC 59.324 47.826 0.00 0.00 0.00 4.20
648 930 5.957304 TCGCAAATTTTCACGTTCATTTTC 58.043 33.333 0.00 0.00 0.00 2.29
717 1001 3.255379 GCTTCGAGCGCCGGTTAG 61.255 66.667 16.35 12.47 39.14 2.34
718 1002 2.582498 CTTCGAGCGCCGGTTAGG 60.582 66.667 16.35 0.00 44.97 2.69
719 1003 3.060020 CTTCGAGCGCCGGTTAGGA 62.060 63.158 16.35 0.00 45.00 2.94
720 1004 2.938539 CTTCGAGCGCCGGTTAGGAG 62.939 65.000 16.35 0.00 45.00 3.69
740 1024 1.679898 CCCCCGAATAGGATCCAGC 59.320 63.158 15.82 0.00 45.00 4.85
741 1025 1.679898 CCCCGAATAGGATCCAGCC 59.320 63.158 15.82 0.00 45.00 4.85
742 1026 1.679898 CCCGAATAGGATCCAGCCC 59.320 63.158 15.82 0.00 45.00 5.19
743 1027 0.838122 CCCGAATAGGATCCAGCCCT 60.838 60.000 15.82 0.00 45.00 5.19
744 1028 1.552486 CCCGAATAGGATCCAGCCCTA 60.552 57.143 15.82 0.00 45.00 3.53
745 1029 2.257207 CCGAATAGGATCCAGCCCTAA 58.743 52.381 15.82 0.00 45.00 2.69
757 1041 6.071896 GGATCCAGCCCTAATTATTTACAAGC 60.072 42.308 6.95 0.00 0.00 4.01
760 1044 7.579105 TCCAGCCCTAATTATTTACAAGCTTA 58.421 34.615 0.00 0.00 0.00 3.09
896 1184 2.517402 CGTAGCGGAGGAGCCTCT 60.517 66.667 15.64 0.00 42.38 3.69
897 1185 1.227883 CGTAGCGGAGGAGCCTCTA 60.228 63.158 15.64 0.00 42.38 2.43
898 1186 1.508808 CGTAGCGGAGGAGCCTCTAC 61.509 65.000 15.64 9.68 46.74 2.59
899 1187 0.179012 GTAGCGGAGGAGCCTCTACT 60.179 60.000 15.64 14.48 46.71 2.57
901 1189 0.179012 AGCGGAGGAGCCTCTACTAC 60.179 60.000 15.64 0.00 42.38 2.73
975 1273 1.740664 GAGGAAACCGGCGAAGGAC 60.741 63.158 9.30 0.00 34.73 3.85
1265 1563 1.684049 AGCGTCAGGAGGAGGAAGG 60.684 63.158 0.00 0.00 33.18 3.46
1338 1636 2.158519 GGACAAGGGAGGTGAAGGAAAA 60.159 50.000 0.00 0.00 0.00 2.29
1518 1820 2.193536 GGGCAAAACGCTGGTGTCT 61.194 57.895 0.00 0.00 41.91 3.41
1585 1887 0.111061 AGGTGCTGCCAATCTCACAA 59.889 50.000 0.00 0.00 40.61 3.33
1588 1890 2.754552 GGTGCTGCCAATCTCACAATTA 59.245 45.455 0.00 0.00 37.17 1.40
1639 1941 6.064060 TGCTCGAATCCCAGATTTGAATATT 58.936 36.000 8.28 0.00 0.00 1.28
1926 2601 1.003233 GTTGAGGGGGAGTGTACCTTG 59.997 57.143 0.00 0.00 34.02 3.61
1990 2665 0.951558 ATTGTGTGGGACTTGCGAAC 59.048 50.000 0.00 0.00 0.00 3.95
2351 3318 9.979578 CTATCTAGCAATTCAGATCAGTAGTTT 57.020 33.333 0.00 0.00 33.58 2.66
2624 3591 3.947196 TGAACACTTGAATTCAGCACAGT 59.053 39.130 8.41 6.47 31.29 3.55
2769 3736 2.447443 ACTGTCCATAGTCTGAAGCGA 58.553 47.619 0.00 0.00 0.00 4.93
2852 3819 4.058817 CGAGTCTATTACAATCCCTTGCC 58.941 47.826 0.00 0.00 35.69 4.52
3014 3981 3.063861 TGAGTTTGATATGTCGCACATGC 59.936 43.478 10.77 0.00 39.53 4.06
3064 4038 5.865013 CACATGCAAGTGCTGAATAATTTGA 59.135 36.000 9.41 0.00 42.66 2.69
3119 4097 6.670077 TTTTTCCCTGTTTAATTTGCACAC 57.330 33.333 0.00 0.00 0.00 3.82
3204 4182 4.265073 AGACATTCAGCAAATCAGTACCC 58.735 43.478 0.00 0.00 0.00 3.69
3220 4198 2.237751 CCCGCAATAGAAGACGCCG 61.238 63.158 0.00 0.00 0.00 6.46
3266 4244 3.454082 TGAAAGGATGCCACAAAAACCTT 59.546 39.130 0.00 0.00 39.05 3.50
3365 4343 8.688151 ACTAGAGTTCATCTGGACTTGTATAAC 58.312 37.037 0.00 0.00 38.78 1.89
3367 4345 5.661458 AGTTCATCTGGACTTGTATAACGG 58.339 41.667 0.00 0.00 0.00 4.44
3368 4346 4.665833 TCATCTGGACTTGTATAACGGG 57.334 45.455 0.00 0.00 0.00 5.28
3369 4347 2.973694 TCTGGACTTGTATAACGGGC 57.026 50.000 0.00 0.00 0.00 6.13
3370 4348 1.483415 TCTGGACTTGTATAACGGGCC 59.517 52.381 0.00 0.00 0.00 5.80
3371 4349 0.542805 TGGACTTGTATAACGGGCCC 59.457 55.000 13.57 13.57 0.00 5.80
3372 4350 0.835276 GGACTTGTATAACGGGCCCT 59.165 55.000 22.43 4.01 0.00 5.19
3373 4351 1.211212 GGACTTGTATAACGGGCCCTT 59.789 52.381 22.43 15.56 0.00 3.95
3374 4352 2.435437 GGACTTGTATAACGGGCCCTTA 59.565 50.000 22.43 17.27 0.00 2.69
3375 4353 3.118298 GGACTTGTATAACGGGCCCTTAA 60.118 47.826 22.43 4.50 0.00 1.85
3376 4354 4.124970 GACTTGTATAACGGGCCCTTAAG 58.875 47.826 22.43 13.05 0.00 1.85
3377 4355 3.118149 ACTTGTATAACGGGCCCTTAAGG 60.118 47.826 22.43 15.14 39.47 2.69
3388 4366 2.640316 CCCTTAAGGCTATGGTGGAC 57.360 55.000 16.70 0.00 0.00 4.02
3389 4367 1.143073 CCCTTAAGGCTATGGTGGACC 59.857 57.143 16.70 0.00 0.00 4.46
3390 4368 1.202651 CCTTAAGGCTATGGTGGACCG 60.203 57.143 9.00 0.00 39.43 4.79
3391 4369 1.760613 CTTAAGGCTATGGTGGACCGA 59.239 52.381 0.00 0.00 39.43 4.69
3392 4370 1.868713 TAAGGCTATGGTGGACCGAA 58.131 50.000 0.00 0.00 39.43 4.30
3393 4371 0.541863 AAGGCTATGGTGGACCGAAG 59.458 55.000 0.00 0.00 39.43 3.79
3394 4372 0.617820 AGGCTATGGTGGACCGAAGT 60.618 55.000 0.00 0.00 39.43 3.01
3395 4373 1.117150 GGCTATGGTGGACCGAAGTA 58.883 55.000 0.00 0.00 39.43 2.24
3396 4374 1.202498 GGCTATGGTGGACCGAAGTAC 60.202 57.143 0.00 0.00 39.43 2.73
3397 4375 1.202498 GCTATGGTGGACCGAAGTACC 60.202 57.143 0.00 0.00 39.43 3.34
3398 4376 1.066605 CTATGGTGGACCGAAGTACCG 59.933 57.143 0.00 0.00 39.43 4.02
3408 4386 1.742761 CGAAGTACCGGACCTACTGA 58.257 55.000 9.46 0.00 0.00 3.41
3409 4387 2.295885 CGAAGTACCGGACCTACTGAT 58.704 52.381 9.46 0.00 0.00 2.90
3410 4388 2.033049 CGAAGTACCGGACCTACTGATG 59.967 54.545 9.46 0.00 0.00 3.07
3411 4389 2.822707 AGTACCGGACCTACTGATGT 57.177 50.000 9.46 0.00 0.00 3.06
3412 4390 2.376109 AGTACCGGACCTACTGATGTG 58.624 52.381 9.46 0.00 0.00 3.21
3413 4391 2.097825 GTACCGGACCTACTGATGTGT 58.902 52.381 9.46 0.00 0.00 3.72
3414 4392 0.895530 ACCGGACCTACTGATGTGTG 59.104 55.000 9.46 0.00 0.00 3.82
3415 4393 0.460284 CCGGACCTACTGATGTGTGC 60.460 60.000 0.00 0.00 0.00 4.57
3416 4394 0.532573 CGGACCTACTGATGTGTGCT 59.467 55.000 0.00 0.00 0.00 4.40
3417 4395 1.737029 CGGACCTACTGATGTGTGCTG 60.737 57.143 0.00 0.00 0.00 4.41
3418 4396 1.406069 GGACCTACTGATGTGTGCTGG 60.406 57.143 0.00 0.00 0.00 4.85
3419 4397 0.615331 ACCTACTGATGTGTGCTGGG 59.385 55.000 0.00 0.00 0.00 4.45
3420 4398 0.615331 CCTACTGATGTGTGCTGGGT 59.385 55.000 0.00 0.00 0.00 4.51
3421 4399 1.831106 CCTACTGATGTGTGCTGGGTA 59.169 52.381 0.00 0.00 0.00 3.69
3422 4400 2.159043 CCTACTGATGTGTGCTGGGTAG 60.159 54.545 0.00 0.00 0.00 3.18
3423 4401 1.644509 ACTGATGTGTGCTGGGTAGA 58.355 50.000 0.00 0.00 0.00 2.59
3424 4402 1.276421 ACTGATGTGTGCTGGGTAGAC 59.724 52.381 0.00 0.00 0.00 2.59
3425 4403 1.276138 CTGATGTGTGCTGGGTAGACA 59.724 52.381 0.00 0.00 0.00 3.41
3426 4404 1.276138 TGATGTGTGCTGGGTAGACAG 59.724 52.381 0.00 0.00 41.41 3.51
3427 4405 1.276421 GATGTGTGCTGGGTAGACAGT 59.724 52.381 0.00 0.00 40.59 3.55
3428 4406 1.128200 TGTGTGCTGGGTAGACAGTT 58.872 50.000 0.00 0.00 40.59 3.16
3429 4407 1.070134 TGTGTGCTGGGTAGACAGTTC 59.930 52.381 0.00 0.00 40.59 3.01
3430 4408 1.070134 GTGTGCTGGGTAGACAGTTCA 59.930 52.381 0.00 0.00 40.59 3.18
3431 4409 1.977854 TGTGCTGGGTAGACAGTTCAT 59.022 47.619 0.00 0.00 40.59 2.57
3432 4410 2.028112 TGTGCTGGGTAGACAGTTCATC 60.028 50.000 0.00 0.00 40.59 2.92
3433 4411 2.234908 GTGCTGGGTAGACAGTTCATCT 59.765 50.000 0.00 0.00 40.59 2.90
3442 4420 2.658538 CAGTTCATCTGGACGCTCG 58.341 57.895 0.00 0.00 40.23 5.03
3443 4421 0.109086 CAGTTCATCTGGACGCTCGT 60.109 55.000 0.00 0.00 40.23 4.18
3444 4422 0.603569 AGTTCATCTGGACGCTCGTT 59.396 50.000 0.00 0.00 0.00 3.85
3445 4423 0.992802 GTTCATCTGGACGCTCGTTC 59.007 55.000 0.00 0.00 0.00 3.95
3446 4424 0.888619 TTCATCTGGACGCTCGTTCT 59.111 50.000 2.18 0.00 0.00 3.01
3447 4425 0.171231 TCATCTGGACGCTCGTTCTG 59.829 55.000 2.18 1.96 0.00 3.02
3448 4426 0.803768 CATCTGGACGCTCGTTCTGG 60.804 60.000 7.56 0.00 0.00 3.86
3449 4427 0.965866 ATCTGGACGCTCGTTCTGGA 60.966 55.000 7.56 4.22 0.00 3.86
3450 4428 1.444553 CTGGACGCTCGTTCTGGAC 60.445 63.158 2.18 0.00 0.00 4.02
3451 4429 2.126031 GGACGCTCGTTCTGGACC 60.126 66.667 0.00 0.00 0.00 4.46
3452 4430 2.637383 GGACGCTCGTTCTGGACCT 61.637 63.158 0.00 0.00 0.00 3.85
3453 4431 1.153997 GACGCTCGTTCTGGACCTC 60.154 63.158 0.00 0.00 0.00 3.85
3454 4432 1.587933 GACGCTCGTTCTGGACCTCT 61.588 60.000 0.00 0.00 0.00 3.69
3455 4433 1.153939 CGCTCGTTCTGGACCTCTG 60.154 63.158 0.00 0.00 0.00 3.35
3456 4434 1.446966 GCTCGTTCTGGACCTCTGC 60.447 63.158 0.00 0.00 0.00 4.26
3457 4435 1.967535 CTCGTTCTGGACCTCTGCA 59.032 57.895 0.00 0.00 0.00 4.41
3458 4436 0.318441 CTCGTTCTGGACCTCTGCAA 59.682 55.000 0.00 0.00 0.00 4.08
3459 4437 0.318441 TCGTTCTGGACCTCTGCAAG 59.682 55.000 0.00 0.00 0.00 4.01
3460 4438 0.034059 CGTTCTGGACCTCTGCAAGT 59.966 55.000 0.00 0.00 33.76 3.16
3461 4439 1.272490 CGTTCTGGACCTCTGCAAGTA 59.728 52.381 0.00 0.00 33.76 2.24
3462 4440 2.672478 CGTTCTGGACCTCTGCAAGTAG 60.672 54.545 0.00 0.00 33.76 2.57
3463 4441 2.563179 GTTCTGGACCTCTGCAAGTAGA 59.437 50.000 0.00 0.00 33.76 2.59
3464 4442 2.451490 TCTGGACCTCTGCAAGTAGAG 58.549 52.381 8.04 8.04 43.04 2.43
3499 4477 1.772836 GGTACCGGACCTACTGATGT 58.227 55.000 9.46 0.00 45.89 3.06
3614 4592 8.462016 GTGCTGTTTAATTGTCCTTTCTGATAT 58.538 33.333 0.00 0.00 0.00 1.63
3702 4698 4.142687 CGGTTTCGGCTCAAGTTAAATCAT 60.143 41.667 0.00 0.00 0.00 2.45
3703 4699 5.619086 CGGTTTCGGCTCAAGTTAAATCATT 60.619 40.000 0.00 0.00 0.00 2.57
3814 4810 3.756727 GCTGCTGCAGGGAAAGCC 61.757 66.667 29.05 8.48 38.71 4.35
3883 4879 1.071542 TCGGCTTGAACATGGAAGACA 59.928 47.619 0.00 0.00 0.00 3.41
3884 4880 1.879380 CGGCTTGAACATGGAAGACAA 59.121 47.619 0.00 0.00 0.00 3.18
3949 4945 5.952347 ACAAGATAGTACATGACTGACAGGA 59.048 40.000 7.51 0.00 39.39 3.86
4007 5003 6.749923 AAGAGCTTTACTATTTCTTGCAGG 57.250 37.500 0.00 0.00 0.00 4.85
4008 5004 6.054860 AGAGCTTTACTATTTCTTGCAGGA 57.945 37.500 0.00 0.00 0.00 3.86
4009 5005 6.476378 AGAGCTTTACTATTTCTTGCAGGAA 58.524 36.000 7.24 7.24 0.00 3.36
4010 5006 7.115414 AGAGCTTTACTATTTCTTGCAGGAAT 58.885 34.615 12.50 5.55 0.00 3.01
4011 5007 7.613411 AGAGCTTTACTATTTCTTGCAGGAATT 59.387 33.333 12.50 11.26 0.00 2.17
4012 5008 8.127150 AGCTTTACTATTTCTTGCAGGAATTT 57.873 30.769 12.50 5.99 0.00 1.82
4013 5009 8.588472 AGCTTTACTATTTCTTGCAGGAATTTT 58.412 29.630 12.50 3.57 0.00 1.82
4014 5010 9.208022 GCTTTACTATTTCTTGCAGGAATTTTT 57.792 29.630 12.50 0.82 0.00 1.94
4082 7095 6.320926 GGTACTCTCTCCGTCCTAAAATAAGT 59.679 42.308 0.00 0.00 0.00 2.24
4134 7963 8.996024 TGATCTAAGACGTATTTCAATGTTGA 57.004 30.769 0.00 0.00 34.92 3.18
4166 7995 7.828717 TCAATCTGAGCAACAACTAATATGGAA 59.171 33.333 0.00 0.00 0.00 3.53
4184 8013 3.135167 TGGAACGGAGTCCAAAAGTAAGT 59.865 43.478 10.49 0.00 45.00 2.24
4242 8071 1.657094 CAATGCCGCATGCTTTTCTTC 59.343 47.619 17.13 0.00 42.00 2.87
4245 8074 1.074872 GCCGCATGCTTTTCTTCTGC 61.075 55.000 17.13 0.67 36.87 4.26
4246 8075 0.241749 CCGCATGCTTTTCTTCTGCA 59.758 50.000 17.13 0.00 41.13 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 323 6.783892 ACGGATTTGAAAATTGTTCATTGG 57.216 33.333 0.00 0.00 0.00 3.16
532 808 8.657729 GTTCTTATGTTCTGTAGCTAGGAAAAC 58.342 37.037 9.73 6.13 0.00 2.43
607 883 2.688364 GAAAGCTGGGTTTCGAACTG 57.312 50.000 0.00 0.00 0.00 3.16
648 930 2.464189 CGAAAACCACGACGCGAG 59.536 61.111 15.93 9.24 0.00 5.03
722 1006 1.679898 GCTGGATCCTATTCGGGGG 59.320 63.158 14.23 0.00 0.00 5.40
723 1007 1.679898 GGCTGGATCCTATTCGGGG 59.320 63.158 14.23 0.00 0.00 5.73
724 1008 0.838122 AGGGCTGGATCCTATTCGGG 60.838 60.000 14.23 0.00 31.86 5.14
725 1009 1.938585 TAGGGCTGGATCCTATTCGG 58.061 55.000 14.23 0.00 35.92 4.30
726 1010 4.559862 AATTAGGGCTGGATCCTATTCG 57.440 45.455 14.23 0.00 36.81 3.34
727 1011 9.397280 GTAAATAATTAGGGCTGGATCCTATTC 57.603 37.037 14.23 0.50 36.81 1.75
728 1012 8.900802 TGTAAATAATTAGGGCTGGATCCTATT 58.099 33.333 14.23 2.44 36.81 1.73
729 1013 8.463055 TGTAAATAATTAGGGCTGGATCCTAT 57.537 34.615 14.23 0.00 36.81 2.57
730 1014 7.881912 TGTAAATAATTAGGGCTGGATCCTA 57.118 36.000 14.23 0.00 35.92 2.94
731 1015 6.780198 TGTAAATAATTAGGGCTGGATCCT 57.220 37.500 14.23 0.00 38.36 3.24
732 1016 6.071896 GCTTGTAAATAATTAGGGCTGGATCC 60.072 42.308 4.20 4.20 0.00 3.36
733 1017 6.717084 AGCTTGTAAATAATTAGGGCTGGATC 59.283 38.462 0.00 0.00 0.00 3.36
734 1018 6.614657 AGCTTGTAAATAATTAGGGCTGGAT 58.385 36.000 0.00 0.00 0.00 3.41
735 1019 6.013554 AGCTTGTAAATAATTAGGGCTGGA 57.986 37.500 0.00 0.00 0.00 3.86
736 1020 6.715347 AAGCTTGTAAATAATTAGGGCTGG 57.285 37.500 0.00 0.00 0.00 4.85
738 1022 9.232473 GCTATAAGCTTGTAAATAATTAGGGCT 57.768 33.333 9.86 0.00 38.45 5.19
739 1023 9.010029 TGCTATAAGCTTGTAAATAATTAGGGC 57.990 33.333 9.86 3.25 42.97 5.19
953 1250 3.894547 TTCGCCGGTTTCCTCCTGC 62.895 63.158 1.90 0.00 35.00 4.85
1265 1563 0.758123 CTCCTCATCCTCTTCCTGCC 59.242 60.000 0.00 0.00 0.00 4.85
1338 1636 4.401519 TCTCCATTATCGTCGAACTCCTTT 59.598 41.667 0.00 0.00 0.00 3.11
1518 1820 3.562973 CCTTGAAGTAGTACTCGCGGATA 59.437 47.826 6.13 0.00 0.00 2.59
1575 1877 7.639072 CGAGCTCAAGAAATAATTGTGAGATTG 59.361 37.037 15.40 0.00 0.00 2.67
1585 1887 5.762218 CCAATCCTCGAGCTCAAGAAATAAT 59.238 40.000 15.40 0.00 0.00 1.28
1588 1890 3.198635 TCCAATCCTCGAGCTCAAGAAAT 59.801 43.478 15.40 0.00 0.00 2.17
1639 1941 3.795150 GCCATTCGAACTGAGCAAAACAA 60.795 43.478 0.00 0.00 0.00 2.83
1926 2601 1.266989 GCTAATGGCCGCATTAAGTCC 59.733 52.381 0.00 0.00 34.27 3.85
2529 3496 5.187772 ACAGATACATGAACCTACTCTTGCA 59.812 40.000 0.00 0.00 0.00 4.08
2710 3677 3.299503 AGCAACATGACAAAGGAAACCT 58.700 40.909 0.00 0.00 33.87 3.50
2852 3819 4.181578 CTGACCCCTTCAGTAAACATACG 58.818 47.826 0.00 0.00 46.12 3.06
3014 3981 9.546909 GAATGCCAATAAAGATGACATAATACG 57.453 33.333 0.00 0.00 0.00 3.06
3021 3988 6.566141 CATGTGAATGCCAATAAAGATGACA 58.434 36.000 0.00 0.00 0.00 3.58
3064 4038 0.109342 AAGGCAGCAGCTACAACACT 59.891 50.000 0.00 0.00 41.70 3.55
3101 4079 3.320541 TGGAGTGTGCAAATTAAACAGGG 59.679 43.478 0.00 0.00 0.00 4.45
3104 4082 6.577103 TGAAATGGAGTGTGCAAATTAAACA 58.423 32.000 0.00 0.00 0.00 2.83
3113 4091 3.379057 CAGCATATGAAATGGAGTGTGCA 59.621 43.478 6.97 0.00 34.01 4.57
3114 4092 3.628942 TCAGCATATGAAATGGAGTGTGC 59.371 43.478 6.97 0.00 34.02 4.57
3115 4093 4.036027 GGTCAGCATATGAAATGGAGTGTG 59.964 45.833 6.97 0.00 40.43 3.82
3116 4094 4.080129 AGGTCAGCATATGAAATGGAGTGT 60.080 41.667 6.97 0.00 40.43 3.55
3117 4095 4.275196 CAGGTCAGCATATGAAATGGAGTG 59.725 45.833 6.97 0.00 40.43 3.51
3118 4096 4.458397 CAGGTCAGCATATGAAATGGAGT 58.542 43.478 6.97 0.00 40.43 3.85
3119 4097 3.252701 GCAGGTCAGCATATGAAATGGAG 59.747 47.826 6.97 0.00 40.43 3.86
3204 4182 0.800683 TGACGGCGTCTTCTATTGCG 60.801 55.000 36.17 0.00 33.15 4.85
3220 4198 6.566197 ATCTGATTCTCCAAGTGTTTTGAC 57.434 37.500 0.00 0.00 0.00 3.18
3266 4244 3.168963 CAGAACGAGCGTCGAGATTTTA 58.831 45.455 13.06 0.00 43.74 1.52
3369 4347 1.143073 GGTCCACCATAGCCTTAAGGG 59.857 57.143 23.06 8.32 35.64 3.95
3370 4348 1.202651 CGGTCCACCATAGCCTTAAGG 60.203 57.143 17.81 17.81 35.14 2.69
3371 4349 1.760613 TCGGTCCACCATAGCCTTAAG 59.239 52.381 0.00 0.00 35.14 1.85
3372 4350 1.868713 TCGGTCCACCATAGCCTTAA 58.131 50.000 0.00 0.00 35.14 1.85
3373 4351 1.760613 CTTCGGTCCACCATAGCCTTA 59.239 52.381 0.00 0.00 35.14 2.69
3374 4352 0.541863 CTTCGGTCCACCATAGCCTT 59.458 55.000 0.00 0.00 35.14 4.35
3375 4353 0.617820 ACTTCGGTCCACCATAGCCT 60.618 55.000 0.00 0.00 35.14 4.58
3376 4354 1.117150 TACTTCGGTCCACCATAGCC 58.883 55.000 0.00 0.00 35.14 3.93
3377 4355 1.202498 GGTACTTCGGTCCACCATAGC 60.202 57.143 0.00 0.00 35.14 2.97
3378 4356 1.066605 CGGTACTTCGGTCCACCATAG 59.933 57.143 0.00 0.00 35.14 2.23
3379 4357 1.105457 CGGTACTTCGGTCCACCATA 58.895 55.000 0.00 0.00 35.14 2.74
3380 4358 1.610554 CCGGTACTTCGGTCCACCAT 61.611 60.000 0.00 0.00 44.60 3.55
3381 4359 2.277591 CCGGTACTTCGGTCCACCA 61.278 63.158 0.00 0.00 44.60 4.17
3382 4360 2.575461 CCGGTACTTCGGTCCACC 59.425 66.667 0.00 0.00 44.60 4.61
3389 4367 1.742761 TCAGTAGGTCCGGTACTTCG 58.257 55.000 0.00 0.00 0.00 3.79
3390 4368 3.022406 ACATCAGTAGGTCCGGTACTTC 58.978 50.000 0.00 0.00 0.00 3.01
3391 4369 2.758979 CACATCAGTAGGTCCGGTACTT 59.241 50.000 0.00 0.00 0.00 2.24
3392 4370 2.291411 ACACATCAGTAGGTCCGGTACT 60.291 50.000 0.00 3.32 0.00 2.73
3393 4371 2.097825 ACACATCAGTAGGTCCGGTAC 58.902 52.381 0.00 0.00 0.00 3.34
3394 4372 2.097036 CACACATCAGTAGGTCCGGTA 58.903 52.381 0.00 0.00 0.00 4.02
3395 4373 0.895530 CACACATCAGTAGGTCCGGT 59.104 55.000 0.00 0.00 0.00 5.28
3396 4374 0.460284 GCACACATCAGTAGGTCCGG 60.460 60.000 0.00 0.00 0.00 5.14
3397 4375 0.532573 AGCACACATCAGTAGGTCCG 59.467 55.000 0.00 0.00 0.00 4.79
3398 4376 1.406069 CCAGCACACATCAGTAGGTCC 60.406 57.143 0.00 0.00 0.00 4.46
3399 4377 1.406069 CCCAGCACACATCAGTAGGTC 60.406 57.143 0.00 0.00 0.00 3.85
3400 4378 0.615331 CCCAGCACACATCAGTAGGT 59.385 55.000 0.00 0.00 0.00 3.08
3401 4379 0.615331 ACCCAGCACACATCAGTAGG 59.385 55.000 0.00 0.00 0.00 3.18
3402 4380 2.760650 TCTACCCAGCACACATCAGTAG 59.239 50.000 0.00 0.00 0.00 2.57
3403 4381 2.496070 GTCTACCCAGCACACATCAGTA 59.504 50.000 0.00 0.00 0.00 2.74
3404 4382 1.276421 GTCTACCCAGCACACATCAGT 59.724 52.381 0.00 0.00 0.00 3.41
3405 4383 1.276138 TGTCTACCCAGCACACATCAG 59.724 52.381 0.00 0.00 0.00 2.90
3406 4384 1.276138 CTGTCTACCCAGCACACATCA 59.724 52.381 0.00 0.00 0.00 3.07
3407 4385 1.276421 ACTGTCTACCCAGCACACATC 59.724 52.381 0.00 0.00 35.83 3.06
3408 4386 1.352083 ACTGTCTACCCAGCACACAT 58.648 50.000 0.00 0.00 35.83 3.21
3409 4387 1.070134 GAACTGTCTACCCAGCACACA 59.930 52.381 0.00 0.00 35.83 3.72
3410 4388 1.070134 TGAACTGTCTACCCAGCACAC 59.930 52.381 0.00 0.00 35.83 3.82
3411 4389 1.419381 TGAACTGTCTACCCAGCACA 58.581 50.000 0.00 0.00 35.83 4.57
3412 4390 2.234908 AGATGAACTGTCTACCCAGCAC 59.765 50.000 0.00 0.00 35.83 4.40
3413 4391 2.234661 CAGATGAACTGTCTACCCAGCA 59.765 50.000 0.00 0.00 41.30 4.41
3414 4392 2.419297 CCAGATGAACTGTCTACCCAGC 60.419 54.545 0.00 0.00 44.40 4.85
3415 4393 3.099905 TCCAGATGAACTGTCTACCCAG 58.900 50.000 0.00 0.00 44.40 4.45
3416 4394 2.832129 GTCCAGATGAACTGTCTACCCA 59.168 50.000 0.00 0.00 44.40 4.51
3417 4395 2.159226 CGTCCAGATGAACTGTCTACCC 60.159 54.545 0.00 0.00 44.40 3.69
3418 4396 2.735762 GCGTCCAGATGAACTGTCTACC 60.736 54.545 0.00 0.00 44.40 3.18
3419 4397 2.164624 AGCGTCCAGATGAACTGTCTAC 59.835 50.000 0.00 0.00 44.40 2.59
3420 4398 2.423892 GAGCGTCCAGATGAACTGTCTA 59.576 50.000 0.00 0.00 44.40 2.59
3421 4399 1.203523 GAGCGTCCAGATGAACTGTCT 59.796 52.381 0.00 0.00 44.40 3.41
3422 4400 1.634702 GAGCGTCCAGATGAACTGTC 58.365 55.000 0.00 0.00 44.40 3.51
3423 4401 0.109086 CGAGCGTCCAGATGAACTGT 60.109 55.000 0.00 0.00 44.40 3.55
3424 4402 0.109086 ACGAGCGTCCAGATGAACTG 60.109 55.000 0.00 0.00 45.36 3.16
3425 4403 0.603569 AACGAGCGTCCAGATGAACT 59.396 50.000 0.00 0.00 0.00 3.01
3426 4404 0.992802 GAACGAGCGTCCAGATGAAC 59.007 55.000 0.00 0.00 0.00 3.18
3427 4405 0.888619 AGAACGAGCGTCCAGATGAA 59.111 50.000 0.00 0.00 0.00 2.57
3428 4406 0.171231 CAGAACGAGCGTCCAGATGA 59.829 55.000 0.00 0.00 0.00 2.92
3429 4407 0.803768 CCAGAACGAGCGTCCAGATG 60.804 60.000 0.00 0.00 0.00 2.90
3430 4408 0.965866 TCCAGAACGAGCGTCCAGAT 60.966 55.000 0.00 0.00 0.00 2.90
3431 4409 1.602605 TCCAGAACGAGCGTCCAGA 60.603 57.895 0.00 0.00 0.00 3.86
3432 4410 1.444553 GTCCAGAACGAGCGTCCAG 60.445 63.158 0.00 0.00 0.00 3.86
3433 4411 2.649034 GTCCAGAACGAGCGTCCA 59.351 61.111 0.00 0.00 0.00 4.02
3434 4412 2.126031 GGTCCAGAACGAGCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
3435 4413 1.153997 GAGGTCCAGAACGAGCGTC 60.154 63.158 0.00 0.00 35.40 5.19
3436 4414 1.604023 AGAGGTCCAGAACGAGCGT 60.604 57.895 0.00 0.00 35.40 5.07
3437 4415 1.153939 CAGAGGTCCAGAACGAGCG 60.154 63.158 0.00 0.00 35.40 5.03
3438 4416 1.446966 GCAGAGGTCCAGAACGAGC 60.447 63.158 0.00 0.00 0.00 5.03
3439 4417 0.318441 TTGCAGAGGTCCAGAACGAG 59.682 55.000 0.00 0.00 0.00 4.18
3440 4418 0.318441 CTTGCAGAGGTCCAGAACGA 59.682 55.000 0.00 0.00 0.00 3.85
3441 4419 0.034059 ACTTGCAGAGGTCCAGAACG 59.966 55.000 0.00 0.00 0.00 3.95
3442 4420 2.563179 TCTACTTGCAGAGGTCCAGAAC 59.437 50.000 0.00 0.00 0.00 3.01
3443 4421 2.828520 CTCTACTTGCAGAGGTCCAGAA 59.171 50.000 0.00 0.00 38.74 3.02
3444 4422 2.225142 ACTCTACTTGCAGAGGTCCAGA 60.225 50.000 5.76 0.00 45.36 3.86
3445 4423 2.175202 ACTCTACTTGCAGAGGTCCAG 58.825 52.381 5.76 0.00 45.36 3.86
3446 4424 2.310779 ACTCTACTTGCAGAGGTCCA 57.689 50.000 5.76 0.00 45.36 4.02
3449 4427 2.829120 GGAGAACTCTACTTGCAGAGGT 59.171 50.000 5.76 0.00 45.43 3.85
3450 4428 2.167487 GGGAGAACTCTACTTGCAGAGG 59.833 54.545 5.76 0.00 45.36 3.69
3451 4429 3.096092 AGGGAGAACTCTACTTGCAGAG 58.904 50.000 0.00 0.00 46.31 3.35
3452 4430 3.176924 AGGGAGAACTCTACTTGCAGA 57.823 47.619 1.86 0.00 0.00 4.26
3453 4431 3.971245 AAGGGAGAACTCTACTTGCAG 57.029 47.619 9.88 0.00 0.00 4.41
3454 4432 4.417437 ACTAAGGGAGAACTCTACTTGCA 58.583 43.478 16.16 0.00 32.35 4.08
3455 4433 4.463186 TGACTAAGGGAGAACTCTACTTGC 59.537 45.833 16.16 9.80 32.35 4.01
3456 4434 6.591750 TTGACTAAGGGAGAACTCTACTTG 57.408 41.667 16.16 11.28 32.35 3.16
3457 4435 6.844097 CTTGACTAAGGGAGAACTCTACTT 57.156 41.667 13.27 13.27 33.71 2.24
3487 4465 1.406069 CCCAGCACACATCAGTAGGTC 60.406 57.143 0.00 0.00 0.00 3.85
3499 4477 1.202758 CCAAACTGTCTACCCAGCACA 60.203 52.381 0.00 0.00 35.83 4.57
3614 4592 2.880443 AGGGCCCGTTATATCTTACGA 58.120 47.619 18.44 0.00 40.03 3.43
3676 4655 0.179067 AACTTGAGCCGAAACCGACA 60.179 50.000 0.00 0.00 0.00 4.35
3681 4660 6.378582 TCAATGATTTAACTTGAGCCGAAAC 58.621 36.000 0.00 0.00 0.00 2.78
3702 4698 5.237048 TCGATGTGTGAACATCAAGATCAA 58.763 37.500 16.64 0.00 44.89 2.57
3703 4699 4.819769 TCGATGTGTGAACATCAAGATCA 58.180 39.130 16.64 0.00 44.89 2.92
3733 4729 6.544928 AGACTTCCAAAATCCAAACTGTTT 57.455 33.333 0.00 0.00 0.00 2.83
3814 4810 4.466370 TCCTTCCTGTAGGTGTTCATGTAG 59.534 45.833 0.00 0.00 36.63 2.74
3883 4879 1.417890 CCTGTCCTGGTCTCACTGTTT 59.582 52.381 0.00 0.00 0.00 2.83
3884 4880 1.051812 CCTGTCCTGGTCTCACTGTT 58.948 55.000 0.00 0.00 0.00 3.16
3937 4933 2.573869 CGCGGTCCTGTCAGTCAT 59.426 61.111 0.00 0.00 0.00 3.06
3949 4945 2.758327 TGGATCTACAGCCGCGGT 60.758 61.111 28.70 9.89 0.00 5.68
4015 5011 8.878769 GCAAAATCCTACAAGAAAAAGTTCAAA 58.121 29.630 0.00 0.00 36.09 2.69
4016 5012 7.494298 GGCAAAATCCTACAAGAAAAAGTTCAA 59.506 33.333 0.00 0.00 36.09 2.69
4017 5013 6.983890 GGCAAAATCCTACAAGAAAAAGTTCA 59.016 34.615 0.00 0.00 36.09 3.18
4018 5014 6.983890 TGGCAAAATCCTACAAGAAAAAGTTC 59.016 34.615 0.00 0.00 0.00 3.01
4019 5015 6.761242 GTGGCAAAATCCTACAAGAAAAAGTT 59.239 34.615 0.00 0.00 0.00 2.66
4020 5016 6.098266 AGTGGCAAAATCCTACAAGAAAAAGT 59.902 34.615 0.00 0.00 0.00 2.66
4021 5017 6.421801 CAGTGGCAAAATCCTACAAGAAAAAG 59.578 38.462 0.00 0.00 0.00 2.27
4022 5018 6.279882 CAGTGGCAAAATCCTACAAGAAAAA 58.720 36.000 0.00 0.00 0.00 1.94
4023 5019 5.221422 CCAGTGGCAAAATCCTACAAGAAAA 60.221 40.000 0.00 0.00 0.00 2.29
4024 5020 4.280677 CCAGTGGCAAAATCCTACAAGAAA 59.719 41.667 0.00 0.00 0.00 2.52
4025 5021 3.826157 CCAGTGGCAAAATCCTACAAGAA 59.174 43.478 0.00 0.00 0.00 2.52
4026 5022 3.181434 ACCAGTGGCAAAATCCTACAAGA 60.181 43.478 9.78 0.00 0.00 3.02
4027 5023 3.057315 CACCAGTGGCAAAATCCTACAAG 60.057 47.826 9.78 0.00 0.00 3.16
4108 7937 9.599866 TCAACATTGAAATACGTCTTAGATCAT 57.400 29.630 0.00 0.00 33.55 2.45
4133 7962 7.081526 AGTTGTTGCTCAGATTGATGTATTC 57.918 36.000 0.00 0.00 0.00 1.75
4134 7963 8.565896 TTAGTTGTTGCTCAGATTGATGTATT 57.434 30.769 0.00 0.00 0.00 1.89
4166 7995 5.052481 GTGTAACTTACTTTTGGACTCCGT 58.948 41.667 0.71 0.00 0.00 4.69
4184 8013 4.153475 GCTTATTTGGCTCGTCAAGTGTAA 59.847 41.667 0.00 0.00 0.00 2.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.