Multiple sequence alignment - TraesCS3D01G253500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G253500 chr3D 100.000 7503 0 0 1 7503 355169872 355162370 0.000000e+00 13856.0
1 TraesCS3D01G253500 chr3B 96.170 4883 133 12 1479 6343 463252092 463256938 0.000000e+00 7932.0
2 TraesCS3D01G253500 chr3B 96.239 4866 136 12 1500 6343 455680982 455676142 0.000000e+00 7928.0
3 TraesCS3D01G253500 chr3B 87.004 1462 79 52 71 1479 455682563 455681160 0.000000e+00 1544.0
4 TraesCS3D01G253500 chr3B 86.989 1468 69 49 71 1479 463250539 463251943 0.000000e+00 1541.0
5 TraesCS3D01G253500 chr3B 90.815 1154 79 16 6359 7503 455676164 455675029 0.000000e+00 1519.0
6 TraesCS3D01G253500 chr3B 87.965 565 31 14 6359 6910 463256916 463257456 3.820000e-177 632.0
7 TraesCS3D01G253500 chr3B 91.696 289 24 0 7215 7503 463259156 463259444 1.170000e-107 401.0
8 TraesCS3D01G253500 chr3B 90.032 311 27 4 6906 7215 463258879 463259186 4.220000e-107 399.0
9 TraesCS3D01G253500 chr3B 92.537 67 5 0 6 72 463250411 463250477 6.200000e-16 97.1
10 TraesCS3D01G253500 chr3A 95.319 4892 169 16 1481 6343 473718081 473713221 0.000000e+00 7710.0
11 TraesCS3D01G253500 chr3A 89.923 784 36 25 561 1321 473719481 473718718 0.000000e+00 970.0
12 TraesCS3D01G253500 chr3A 88.485 660 59 6 6853 7501 473712682 473712029 0.000000e+00 782.0
13 TraesCS3D01G253500 chr3A 85.776 464 34 11 6359 6813 473713243 473712803 5.300000e-126 462.0
14 TraesCS3D01G253500 chr3A 82.887 485 48 19 71 537 473721491 473721024 3.260000e-108 403.0
15 TraesCS3D01G253500 chr3A 85.294 68 8 2 216 282 22540285 22540351 1.350000e-07 69.4
16 TraesCS3D01G253500 chrUn 85.294 68 8 2 216 282 220215834 220215900 1.350000e-07 69.4
17 TraesCS3D01G253500 chr7B 85.294 68 8 2 216 282 747635529 747635595 1.350000e-07 69.4
18 TraesCS3D01G253500 chr7A 85.294 68 8 2 216 282 671181405 671181339 1.350000e-07 69.4
19 TraesCS3D01G253500 chr4A 85.294 68 8 2 216 282 609391916 609391982 1.350000e-07 69.4
20 TraesCS3D01G253500 chr4A 83.824 68 9 2 216 282 609308299 609308365 6.290000e-06 63.9
21 TraesCS3D01G253500 chr2B 85.294 68 8 2 216 282 35016790 35016724 1.350000e-07 69.4
22 TraesCS3D01G253500 chr6B 83.824 68 9 2 216 282 623378036 623378102 6.290000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G253500 chr3D 355162370 355169872 7502 True 13856.000000 13856 100.000000 1 7503 1 chr3D.!!$R1 7502
1 TraesCS3D01G253500 chr3B 455675029 455682563 7534 True 3663.666667 7928 91.352667 71 7503 3 chr3B.!!$R1 7432
2 TraesCS3D01G253500 chr3B 463250411 463259444 9033 False 1833.683333 7932 90.898167 6 7503 6 chr3B.!!$F1 7497
3 TraesCS3D01G253500 chr3A 473712029 473721491 9462 True 2065.400000 7710 88.478000 71 7501 5 chr3A.!!$R1 7430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 2641 0.387367 CGGAGCCGATTCGATTCGAT 60.387 55.000 26.39 16.37 41.62 3.59 F
1469 3456 0.806868 AACGGAGCACTCGATTACGA 59.193 50.000 0.00 0.00 46.56 3.43 F
1546 3694 1.354040 CTCAAGTGTGTCTGATCGCC 58.646 55.000 0.00 0.00 0.00 5.54 F
2424 4592 0.322648 AAAGCTTGCCAAATCCCTGC 59.677 50.000 0.00 0.00 0.00 4.85 F
2425 4593 0.832983 AAGCTTGCCAAATCCCTGCA 60.833 50.000 0.00 0.00 0.00 4.41 F
2439 4607 1.134729 CCCTGCACCATGCCAAATAAC 60.135 52.381 0.00 0.00 44.23 1.89 F
3670 5840 0.179086 GCTTCAGTGCCTCCTAGCTC 60.179 60.000 0.00 0.00 0.00 4.09 F
4542 6712 1.202268 GCAGGCAAGCTAGCTTTGATG 60.202 52.381 27.34 23.22 33.42 3.07 F
6052 8246 0.250684 TCTTCGCCAAATCCTGTGCA 60.251 50.000 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 4458 0.983467 TCCTGGTGCTCATGCTTACA 59.017 50.000 0.00 0.00 40.48 2.41 R
2350 4518 1.147376 CCACCTCGTGTTGGGTTGA 59.853 57.895 0.00 0.00 32.95 3.18 R
3471 5641 1.375908 TTGGCACGCTAGAAGCAGG 60.376 57.895 0.00 0.00 42.58 4.85 R
3647 5817 1.761784 CTAGGAGGCACTGAAGCATCT 59.238 52.381 10.17 2.94 44.17 2.90 R
3670 5840 1.909700 AGTAGTTGCACCATGTTGGG 58.090 50.000 0.00 0.00 43.37 4.12 R
3907 6077 2.651642 AGACTTCCTTTCCCTAGGCT 57.348 50.000 2.05 0.00 35.15 4.58 R
4599 6769 0.534203 TTCTGGTTGTCCCAAGACGC 60.534 55.000 0.00 0.00 46.74 5.19 R
6370 8564 0.108585 GGGCACAACAAGTCTCTCCA 59.891 55.000 0.00 0.00 0.00 3.86 R
7352 11075 0.994995 CGATTGAGCGAGACACTTGG 59.005 55.000 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.005155 GGGCATATGGCTTTCTCAACATC 59.995 47.826 26.45 3.87 44.01 3.06
40 41 3.887716 GGCATATGGCTTTCTCAACATCT 59.112 43.478 21.32 0.00 44.01 2.90
49 50 3.485463 TTCTCAACATCTTGAACCGGT 57.515 42.857 0.00 0.00 35.92 5.28
51 52 4.610605 TCTCAACATCTTGAACCGGTTA 57.389 40.909 22.33 4.58 35.92 2.85
64 65 5.180271 TGAACCGGTTAGGAAATATGACAC 58.820 41.667 22.33 2.66 45.00 3.67
110 174 2.682269 GCCATCTCTCAGGGTCCTTTTC 60.682 54.545 0.00 0.00 0.00 2.29
124 188 2.565834 TCCTTTTCTGTTACTCCCTCCG 59.434 50.000 0.00 0.00 0.00 4.63
190 254 4.581824 TGTCTACGTTTGACCAACTCTACT 59.418 41.667 15.54 0.00 33.83 2.57
191 255 5.764686 TGTCTACGTTTGACCAACTCTACTA 59.235 40.000 15.54 0.00 33.83 1.82
192 256 6.082984 GTCTACGTTTGACCAACTCTACTAC 58.917 44.000 0.00 0.00 32.53 2.73
195 259 5.045872 ACGTTTGACCAACTCTACTACAAC 58.954 41.667 0.00 0.00 32.53 3.32
197 261 5.051240 CGTTTGACCAACTCTACTACAACAC 60.051 44.000 0.00 0.00 32.53 3.32
198 262 4.595762 TGACCAACTCTACTACAACACC 57.404 45.455 0.00 0.00 0.00 4.16
199 263 3.962063 TGACCAACTCTACTACAACACCA 59.038 43.478 0.00 0.00 0.00 4.17
200 264 4.406326 TGACCAACTCTACTACAACACCAA 59.594 41.667 0.00 0.00 0.00 3.67
201 265 5.104859 TGACCAACTCTACTACAACACCAAA 60.105 40.000 0.00 0.00 0.00 3.28
204 268 6.932960 ACCAACTCTACTACAACACCAAATAC 59.067 38.462 0.00 0.00 0.00 1.89
205 269 6.932400 CCAACTCTACTACAACACCAAATACA 59.068 38.462 0.00 0.00 0.00 2.29
207 271 7.534723 ACTCTACTACAACACCAAATACAGA 57.465 36.000 0.00 0.00 0.00 3.41
208 272 8.135382 ACTCTACTACAACACCAAATACAGAT 57.865 34.615 0.00 0.00 0.00 2.90
209 273 9.251440 ACTCTACTACAACACCAAATACAGATA 57.749 33.333 0.00 0.00 0.00 1.98
211 275 9.865321 TCTACTACAACACCAAATACAGATAAC 57.135 33.333 0.00 0.00 0.00 1.89
244 308 7.959689 ATATTTCATGAAGAATCTCACGAGG 57.040 36.000 8.41 0.00 35.83 4.63
268 332 6.451393 GCCAATTTGGTGTTGTAGATGTTAA 58.549 36.000 16.62 0.00 40.46 2.01
386 460 3.419943 TGTGCTTGACCTTGATGCATAA 58.580 40.909 0.00 0.00 36.04 1.90
402 476 6.667414 TGATGCATAAGGGTAATTTCCTGTTT 59.333 34.615 0.00 0.00 34.34 2.83
417 491 9.884636 AATTTCCTGTTTAGTAAATTTATGGCC 57.115 29.630 0.31 0.00 29.55 5.36
419 493 5.591067 TCCTGTTTAGTAAATTTATGGCCCG 59.409 40.000 0.00 0.00 0.00 6.13
442 534 1.839894 CAGATTGGGGGAGGGTAGC 59.160 63.158 0.00 0.00 0.00 3.58
504 596 8.195436 CAGGAACAATCTATTCATTCAAGCATT 58.805 33.333 0.00 0.00 0.00 3.56
522 614 6.229936 AGCATTCATCAACATAAAATGGCT 57.770 33.333 0.00 0.00 33.60 4.75
606 2217 5.976458 TGAAGTGGAAGAACAAAAATTGCT 58.024 33.333 0.00 0.00 0.00 3.91
613 2224 5.177511 GGAAGAACAAAAATTGCTAAGTGCC 59.822 40.000 0.00 0.00 42.00 5.01
614 2225 4.631131 AGAACAAAAATTGCTAAGTGCCC 58.369 39.130 0.00 0.00 42.00 5.36
644 2255 1.748879 TAAATCGCCAGGTGCCTGC 60.749 57.895 12.54 7.49 42.35 4.85
682 2293 1.899142 CAAACCCAACGGAAATCCCAT 59.101 47.619 0.00 0.00 34.14 4.00
732 2343 2.079288 GGTCAATCCCCCTCCCCTC 61.079 68.421 0.00 0.00 0.00 4.30
826 2442 1.890174 GGAAATCCCACCCGCAAAG 59.110 57.895 0.00 0.00 34.14 2.77
837 2453 0.666374 CCCGCAAAGAAAACGGTTCT 59.334 50.000 0.00 0.00 45.49 3.01
849 2465 2.833631 ACGGTTCTGTTTCCTACCAG 57.166 50.000 0.00 0.00 0.00 4.00
864 2484 1.614824 CCAGCAAGTCTCCTCCCCT 60.615 63.158 0.00 0.00 0.00 4.79
869 2489 1.362224 CAAGTCTCCTCCCCTTTCCA 58.638 55.000 0.00 0.00 0.00 3.53
926 2573 3.649277 CTCACCAACGCGGAGAGGG 62.649 68.421 12.47 6.65 45.91 4.30
947 2594 6.810500 AGGGAGCATCTTCTATAATACTCCT 58.189 40.000 0.00 0.00 41.75 3.69
948 2595 6.895204 AGGGAGCATCTTCTATAATACTCCTC 59.105 42.308 0.00 0.00 41.75 3.71
990 2638 1.269444 CGACGGAGCCGATTCGATTC 61.269 60.000 16.83 4.56 39.26 2.52
991 2639 1.269444 GACGGAGCCGATTCGATTCG 61.269 60.000 19.89 19.89 42.83 3.34
992 2640 1.008881 CGGAGCCGATTCGATTCGA 60.009 57.895 26.39 4.29 41.62 3.71
993 2641 0.387367 CGGAGCCGATTCGATTCGAT 60.387 55.000 26.39 16.37 41.62 3.59
994 2642 1.784525 GGAGCCGATTCGATTCGATT 58.215 50.000 26.39 15.71 41.62 3.34
1157 2808 1.443802 GGTTCCTGCTTCTTCCTTCG 58.556 55.000 0.00 0.00 0.00 3.79
1199 2851 3.632189 GAGATTGAACGCTTGCTTTTGT 58.368 40.909 0.00 0.00 0.00 2.83
1207 2859 4.320667 ACGCTTGCTTTTGTTTTTGTTC 57.679 36.364 0.00 0.00 0.00 3.18
1344 3000 2.358737 GGCAACCAGGACCAGACG 60.359 66.667 0.00 0.00 0.00 4.18
1416 3403 6.249911 TGTCATCCTAGTACTACTAGCACT 57.750 41.667 15.43 0.00 45.21 4.40
1426 3413 3.090037 ACTACTAGCACTGTTCGTCCAT 58.910 45.455 0.00 0.00 0.00 3.41
1457 3444 0.949105 ATTGTGTGGACGAACGGAGC 60.949 55.000 0.00 0.00 0.00 4.70
1469 3456 0.806868 AACGGAGCACTCGATTACGA 59.193 50.000 0.00 0.00 46.56 3.43
1521 3666 9.248291 CCTGTTACATTATGTTATTGCCAATTC 57.752 33.333 2.23 0.00 0.00 2.17
1523 3668 8.200792 TGTTACATTATGTTATTGCCAATTCCC 58.799 33.333 2.23 0.00 0.00 3.97
1546 3694 1.354040 CTCAAGTGTGTCTGATCGCC 58.646 55.000 0.00 0.00 0.00 5.54
1784 3936 4.454678 TGGTCCATGTCTTTATCTGATGC 58.545 43.478 0.00 0.00 0.00 3.91
1857 4009 3.942115 TGAGGACTATCACTTCAGTCTCG 59.058 47.826 2.13 0.00 40.83 4.04
1859 4011 3.692101 AGGACTATCACTTCAGTCTCGTG 59.308 47.826 2.13 0.00 40.83 4.35
1906 4058 6.667558 AGGGTAGGAGTTATCTTTTATCCG 57.332 41.667 0.00 0.00 35.13 4.18
1914 4066 8.925338 AGGAGTTATCTTTTATCCGTTATCAGT 58.075 33.333 0.00 0.00 35.13 3.41
1933 4085 4.224370 TCAGTGAACTAGGGTATGGTTTCC 59.776 45.833 0.00 0.00 31.87 3.13
2122 4274 2.173519 CCATGACCAAACTTCAGGCAT 58.826 47.619 0.00 0.00 0.00 4.40
2155 4307 6.152661 TGGTGCCAGAAAAATAATGGACTAAG 59.847 38.462 0.00 0.00 36.09 2.18
2160 4312 6.093495 CCAGAAAAATAATGGACTAAGCACGA 59.907 38.462 0.00 0.00 36.09 4.35
2297 4465 1.965935 AGTGTGCATGTGTGTAAGCA 58.034 45.000 0.00 0.00 34.10 3.91
2313 4481 2.226962 AGCATGAGCACCAGGATTTT 57.773 45.000 0.00 0.00 45.49 1.82
2350 4518 3.971468 ATTGTACCCCCATAACTGCAT 57.029 42.857 0.00 0.00 0.00 3.96
2361 4529 3.367292 CCATAACTGCATCAACCCAACAC 60.367 47.826 0.00 0.00 0.00 3.32
2424 4592 0.322648 AAAGCTTGCCAAATCCCTGC 59.677 50.000 0.00 0.00 0.00 4.85
2425 4593 0.832983 AAGCTTGCCAAATCCCTGCA 60.833 50.000 0.00 0.00 0.00 4.41
2439 4607 1.134729 CCCTGCACCATGCCAAATAAC 60.135 52.381 0.00 0.00 44.23 1.89
2543 4711 4.678840 GCAGCCAATCTGGATAAAAAGTGG 60.679 45.833 0.00 0.00 40.96 4.00
2891 5061 2.606725 CCTATTTTCTGCTGTGCTCTCG 59.393 50.000 0.00 0.00 0.00 4.04
2919 5089 7.212274 GCACATATCTATTTTTGCCCTGAATT 58.788 34.615 0.00 0.00 0.00 2.17
2994 5164 3.044156 TGATCTGAAGGAGGCAATAGCT 58.956 45.455 0.00 0.00 41.70 3.32
3246 5416 3.385469 CTCTCAGCAGGAGCACCA 58.615 61.111 2.07 0.00 45.49 4.17
3368 5538 3.446161 CGGATGGTAAACTGACAGACCTA 59.554 47.826 10.08 0.00 32.87 3.08
3409 5579 7.556844 TGAGTATTTTGACTCTAACCTGATCC 58.443 38.462 5.26 0.00 45.21 3.36
3471 5641 1.165270 CATTCCAACTTCGGGGTCAC 58.835 55.000 0.00 0.00 0.00 3.67
3528 5698 5.374921 CAGCTCCCTATTCATCTGTTCAAT 58.625 41.667 0.00 0.00 0.00 2.57
3580 5750 7.092935 ACCTTCTTATGAATCTTCTGAAGCTCT 60.093 37.037 12.54 0.00 0.00 4.09
3647 5817 4.105697 ACACAGGAAAATAGAAGGGGTTCA 59.894 41.667 0.00 0.00 0.00 3.18
3670 5840 0.179086 GCTTCAGTGCCTCCTAGCTC 60.179 60.000 0.00 0.00 0.00 4.09
3701 5871 3.623510 GTGCAACTACTTATTCCTCAGCC 59.376 47.826 0.00 0.00 0.00 4.85
3882 6052 8.189119 AGTTTATTTTATCTTTGCAGACCCAA 57.811 30.769 0.00 0.00 0.00 4.12
3907 6077 2.568956 CCAGGACTGAAGAGATCAACCA 59.431 50.000 0.00 0.00 37.67 3.67
4072 6242 3.691609 GGAAACTTCTATGCAGACCAAGG 59.308 47.826 0.00 0.00 0.00 3.61
4092 6262 5.028549 AGGTACTGGTGCTTATGAATCAG 57.971 43.478 0.00 0.00 37.18 2.90
4193 6363 5.406780 GCAGAGTTCAGGTATTAATGATCCG 59.593 44.000 0.00 0.00 0.00 4.18
4225 6395 7.750229 TCTCAAGTAATGCAAGAAAAGATGT 57.250 32.000 0.00 0.00 0.00 3.06
4320 6490 3.711190 TGCTCCTGAAAGCCATACTGATA 59.289 43.478 0.00 0.00 41.77 2.15
4321 6491 4.349048 TGCTCCTGAAAGCCATACTGATAT 59.651 41.667 0.00 0.00 41.77 1.63
4322 6492 4.694509 GCTCCTGAAAGCCATACTGATATG 59.305 45.833 0.00 0.00 38.38 1.78
4440 6610 8.489990 TGAGAAAGAAAGCAATATCAGAAGAG 57.510 34.615 0.00 0.00 0.00 2.85
4453 6623 2.244486 AGAAGAGCTGAGGATCACCA 57.756 50.000 0.00 0.00 42.56 4.17
4542 6712 1.202268 GCAGGCAAGCTAGCTTTGATG 60.202 52.381 27.34 23.22 33.42 3.07
4599 6769 4.704833 CCCACGGTGGCAGGAGTG 62.705 72.222 21.88 2.23 35.79 3.51
4659 6829 7.688372 TGATTCTTCAGCTGTTTTATTCGATC 58.312 34.615 14.67 6.97 0.00 3.69
4715 6885 7.202526 TGTTGGATCATTTCTCTTCAAAACAC 58.797 34.615 0.00 0.00 0.00 3.32
4729 6899 2.338577 AAACACACTGAAGAGCTGCT 57.661 45.000 0.00 0.00 0.00 4.24
4734 6904 3.574396 ACACACTGAAGAGCTGCTAACTA 59.426 43.478 0.15 0.00 0.00 2.24
5023 7208 4.590850 ATTCTGGAAAGTTTGTTCCTGC 57.409 40.909 5.62 0.00 46.29 4.85
5060 7254 0.394899 AATCTAGGCCCAGCAAGCAC 60.395 55.000 0.00 0.00 0.00 4.40
5209 7403 6.931281 TCAGAAGAAGAAACAGAACCACATAG 59.069 38.462 0.00 0.00 0.00 2.23
5275 7469 3.126879 CTCGCCTTTCCGCATGCA 61.127 61.111 19.57 0.00 0.00 3.96
5285 7479 1.798725 CCGCATGCAAACTTCAGCG 60.799 57.895 19.57 0.00 44.24 5.18
5367 7561 5.500645 ACTAAGAAACAAACTCAGGCAAC 57.499 39.130 0.00 0.00 0.00 4.17
5447 7641 2.011947 TCTGCCAGCATTGAAGAATCG 58.988 47.619 0.00 0.00 0.00 3.34
5471 7665 4.614284 GTGCATTTCAAAGAGAATGACACG 59.386 41.667 0.00 0.00 35.83 4.49
5657 7851 4.141914 GGGAAGTTATCTGAACGATCTGGT 60.142 45.833 0.00 0.00 33.48 4.00
5811 8005 4.248859 TGAGAGCGAAGAAGAATTGGAAG 58.751 43.478 0.00 0.00 0.00 3.46
6006 8200 3.181487 TGAACAAAGAAAAGCAGCACCTC 60.181 43.478 0.00 0.00 0.00 3.85
6013 8207 2.887151 AAAGCAGCACCTCCATACTT 57.113 45.000 0.00 0.00 0.00 2.24
6052 8246 0.250684 TCTTCGCCAAATCCTGTGCA 60.251 50.000 0.00 0.00 0.00 4.57
6079 8273 2.683572 TCCCGCAGCTAGAGGCAA 60.684 61.111 0.00 0.00 44.79 4.52
6133 8327 3.118186 TCTCCAGAAAACGAGGGAAACAA 60.118 43.478 0.00 0.00 0.00 2.83
6266 8460 0.392060 GAACCAATCGCCGTTAGGGT 60.392 55.000 0.00 0.00 38.44 4.34
6340 8534 2.887152 AGAAACACAATGGTTGGAGAGC 59.113 45.455 0.00 0.00 34.12 4.09
6341 8535 2.664402 AACACAATGGTTGGAGAGCT 57.336 45.000 0.00 0.00 34.12 4.09
6342 8536 2.664402 ACACAATGGTTGGAGAGCTT 57.336 45.000 0.00 0.00 34.12 3.74
6343 8537 2.949447 ACACAATGGTTGGAGAGCTTT 58.051 42.857 0.00 0.00 34.12 3.51
6344 8538 3.299503 ACACAATGGTTGGAGAGCTTTT 58.700 40.909 0.00 0.00 34.12 2.27
6345 8539 3.319122 ACACAATGGTTGGAGAGCTTTTC 59.681 43.478 0.00 0.00 34.12 2.29
6346 8540 3.318839 CACAATGGTTGGAGAGCTTTTCA 59.681 43.478 0.00 0.00 34.12 2.69
6347 8541 3.960102 ACAATGGTTGGAGAGCTTTTCAA 59.040 39.130 0.00 0.00 34.12 2.69
6348 8542 4.405358 ACAATGGTTGGAGAGCTTTTCAAA 59.595 37.500 0.00 0.00 34.12 2.69
6349 8543 5.104982 ACAATGGTTGGAGAGCTTTTCAAAA 60.105 36.000 0.00 0.00 34.12 2.44
6350 8544 5.612725 ATGGTTGGAGAGCTTTTCAAAAA 57.387 34.783 0.00 0.00 0.00 1.94
6381 8575 3.480470 ACACAATGGTTGGAGAGACTTG 58.520 45.455 0.00 0.00 34.12 3.16
6393 8587 0.890996 GAGACTTGTTGTGCCCTGGG 60.891 60.000 8.86 8.86 0.00 4.45
6394 8588 1.152756 GACTTGTTGTGCCCTGGGT 60.153 57.895 15.56 0.00 0.00 4.51
6395 8589 0.109723 GACTTGTTGTGCCCTGGGTA 59.890 55.000 15.56 7.10 0.00 3.69
6578 8776 4.141711 ACTCAAGCTCAGACCTTGTTTGTA 60.142 41.667 5.53 0.00 40.35 2.41
6610 8808 7.510343 AGGAATTATTGGCCTGCAGTTTATTAT 59.490 33.333 13.81 1.11 0.00 1.28
6611 8809 8.150296 GGAATTATTGGCCTGCAGTTTATTATT 58.850 33.333 13.81 6.20 0.00 1.40
6616 8814 6.449635 TGGCCTGCAGTTTATTATTAGTTG 57.550 37.500 13.81 0.00 0.00 3.16
6628 8826 8.613482 GTTTATTATTAGTTGTCCTTGAGAGCC 58.387 37.037 0.00 0.00 0.00 4.70
6657 8858 6.494842 TCCTTTCACTTCAAATTTGTCTTCG 58.505 36.000 17.47 4.88 0.00 3.79
6683 8884 4.634199 ACTTCGGACAAACTTCGGAATTA 58.366 39.130 0.00 0.00 35.14 1.40
6686 8887 3.991773 TCGGACAAACTTCGGAATTACTG 59.008 43.478 0.00 0.00 0.00 2.74
6693 8894 2.081462 CTTCGGAATTACTGCCCGTTT 58.919 47.619 0.00 0.00 43.40 3.60
6716 8917 1.067199 CCGCGTGAAGATTTGCTTGC 61.067 55.000 4.92 0.00 36.83 4.01
6762 8965 4.778579 AGATTTGGATGGATGTCACTCTG 58.221 43.478 0.00 0.00 0.00 3.35
6804 9007 0.539986 TTACCGGGCCTGTTCATCTC 59.460 55.000 11.58 0.00 0.00 2.75
6807 9010 1.218047 CGGGCCTGTTCATCTCGAA 59.782 57.895 2.29 0.00 0.00 3.71
6808 9011 0.807667 CGGGCCTGTTCATCTCGAAG 60.808 60.000 2.29 0.00 33.09 3.79
6819 9022 8.144478 CCTGTTCATCTCGAAGAAAGGATAATA 58.856 37.037 12.50 0.00 34.09 0.98
6820 9023 9.534565 CTGTTCATCTCGAAGAAAGGATAATAA 57.465 33.333 0.00 0.00 34.09 1.40
6883 9168 6.018994 GTCTTAATTTGTAGCATGGACTACGG 60.019 42.308 0.00 0.00 44.55 4.02
6904 9189 5.824097 ACGGTTTGTTTACAATACAAGAGGT 59.176 36.000 0.00 0.00 36.89 3.85
7023 10734 6.306987 ACATTAAAAAGGTGATGGTGAGACT 58.693 36.000 0.00 0.00 0.00 3.24
7053 10764 9.064804 CAGCACATTAACAACAATACACATAAG 57.935 33.333 0.00 0.00 0.00 1.73
7119 10830 6.238538 CGTTTGTGACAGTAAGTACCCATTTT 60.239 38.462 0.00 0.00 0.00 1.82
7207 10930 8.608317 TGTTGACATAATGTACCACATTTATCG 58.392 33.333 9.61 0.62 45.80 2.92
7252 10975 5.634859 CACATTTAGCAAATTGTCTCCCAAC 59.365 40.000 0.00 0.00 35.44 3.77
7271 10994 2.197324 GACACAAAGGGCCCACCA 59.803 61.111 27.56 0.00 43.89 4.17
7274 10997 0.399806 ACACAAAGGGCCCACCAATT 60.400 50.000 27.56 5.84 43.89 2.32
7352 11075 2.751166 TAGCTCTGGTTCAGCTGAAC 57.249 50.000 39.76 39.76 46.99 3.18
7373 11096 0.737715 AAGTGTCTCGCTCAATCGGC 60.738 55.000 0.00 0.00 0.00 5.54
7389 11112 2.124529 GCCCCTCTAGCACTTGCC 60.125 66.667 0.00 0.00 43.38 4.52
7408 11131 1.310933 CGAAAGGGCAAGCTGAGCAT 61.311 55.000 7.39 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.789012 TGCCCATTCAAGACAAAGATTC 57.211 40.909 0.00 0.00 0.00 2.52
1 2 6.183360 CCATATGCCCATTCAAGACAAAGATT 60.183 38.462 0.00 0.00 0.00 2.40
2 3 5.303589 CCATATGCCCATTCAAGACAAAGAT 59.696 40.000 0.00 0.00 0.00 2.40
3 4 4.646040 CCATATGCCCATTCAAGACAAAGA 59.354 41.667 0.00 0.00 0.00 2.52
4 5 4.738541 GCCATATGCCCATTCAAGACAAAG 60.739 45.833 0.00 0.00 0.00 2.77
39 40 5.878116 TGTCATATTTCCTAACCGGTTCAAG 59.122 40.000 26.16 16.82 0.00 3.02
40 41 5.644636 GTGTCATATTTCCTAACCGGTTCAA 59.355 40.000 26.16 12.58 0.00 2.69
49 50 7.882791 TCTTCTTGCAAGTGTCATATTTCCTAA 59.117 33.333 25.19 6.79 0.00 2.69
51 52 6.240894 TCTTCTTGCAAGTGTCATATTTCCT 58.759 36.000 25.19 0.00 0.00 3.36
64 65 3.120095 TGCGACATTCATCTTCTTGCAAG 60.120 43.478 20.81 20.81 0.00 4.01
110 174 4.796038 TTTAGAACGGAGGGAGTAACAG 57.204 45.455 0.00 0.00 0.00 3.16
161 225 6.108015 AGTTGGTCAAACGTAGACAAGTTTA 58.892 36.000 18.98 0.00 44.04 2.01
169 233 5.764686 TGTAGTAGAGTTGGTCAAACGTAGA 59.235 40.000 0.00 0.00 44.04 2.59
170 234 6.005583 TGTAGTAGAGTTGGTCAAACGTAG 57.994 41.667 0.00 0.00 44.04 3.51
241 305 3.153919 TCTACAACACCAAATTGGCCTC 58.846 45.455 12.67 0.00 42.67 4.70
244 308 4.519540 ACATCTACAACACCAAATTGGC 57.480 40.909 12.67 0.00 42.67 4.52
322 392 9.408648 ACTACCTCCATTTCGAAATAATTGAAT 57.591 29.630 22.33 8.37 0.00 2.57
360 434 3.119245 GCATCAAGGTCAAGCACATCAAT 60.119 43.478 0.00 0.00 0.00 2.57
402 476 2.873472 CACGCGGGCCATAAATTTACTA 59.127 45.455 12.47 0.00 0.00 1.82
419 493 2.825836 CTCCCCCAATCTGCACGC 60.826 66.667 0.00 0.00 0.00 5.34
484 576 9.744468 TTGATGAATGCTTGAATGAATAGATTG 57.256 29.630 0.00 0.00 0.00 2.67
504 596 5.015515 TGGTCAGCCATTTTATGTTGATGA 58.984 37.500 0.00 0.00 40.46 2.92
522 614 3.170672 AGCCTGCAGGTGTGGTCA 61.171 61.111 32.81 0.00 37.57 4.02
579 2190 8.825745 GCAATTTTTGTTCTTCCACTTCATAAA 58.174 29.630 0.00 0.00 0.00 1.40
580 2191 8.203485 AGCAATTTTTGTTCTTCCACTTCATAA 58.797 29.630 0.00 0.00 0.00 1.90
581 2192 7.725251 AGCAATTTTTGTTCTTCCACTTCATA 58.275 30.769 0.00 0.00 0.00 2.15
606 2217 7.362229 CGATTTACCATAAACAAAGGGCACTTA 60.362 37.037 0.00 0.00 35.41 2.24
613 2224 5.317733 TGGCGATTTACCATAAACAAAGG 57.682 39.130 0.00 0.00 30.29 3.11
614 2225 5.105917 ACCTGGCGATTTACCATAAACAAAG 60.106 40.000 0.00 0.00 36.36 2.77
644 2255 2.031163 GCGGGGATCTTCGGATGG 59.969 66.667 9.49 0.00 34.38 3.51
826 2442 3.878699 TGGTAGGAAACAGAACCGTTTTC 59.121 43.478 0.00 0.00 39.17 2.29
837 2453 2.038557 GGAGACTTGCTGGTAGGAAACA 59.961 50.000 0.00 0.00 0.00 2.83
849 2465 0.034960 GGAAAGGGGAGGAGACTTGC 60.035 60.000 0.00 0.00 44.43 4.01
864 2484 0.709992 CAAGGGGAAGGGGATGGAAA 59.290 55.000 0.00 0.00 0.00 3.13
869 2489 3.420482 CGCCAAGGGGAAGGGGAT 61.420 66.667 0.00 0.00 40.00 3.85
926 2573 7.954666 AGGAGGAGTATTATAGAAGATGCTC 57.045 40.000 0.00 0.00 35.20 4.26
947 2594 4.109675 GGCGGGGCTGCTTTAGGA 62.110 66.667 0.00 0.00 34.52 2.94
990 2638 1.792949 GATTCCAACGGGATCGAATCG 59.207 52.381 0.00 0.00 44.48 3.34
991 2639 3.113260 AGATTCCAACGGGATCGAATC 57.887 47.619 9.49 9.49 44.48 2.52
992 2640 3.555168 GCTAGATTCCAACGGGATCGAAT 60.555 47.826 0.00 0.00 44.48 3.34
993 2641 2.223971 GCTAGATTCCAACGGGATCGAA 60.224 50.000 0.00 0.00 44.48 3.71
994 2642 1.340248 GCTAGATTCCAACGGGATCGA 59.660 52.381 0.00 0.00 44.48 3.59
1157 2808 3.666253 CCCACGGAAACCAACGGC 61.666 66.667 0.00 0.00 0.00 5.68
1199 2851 4.170256 GAGACGCCACAAAAGAACAAAAA 58.830 39.130 0.00 0.00 0.00 1.94
1207 2859 0.662619 TTGCTGAGACGCCACAAAAG 59.337 50.000 0.00 0.00 0.00 2.27
1416 3403 7.094420 ACAATTACATCATCAAATGGACGAACA 60.094 33.333 0.00 0.00 0.00 3.18
1426 3413 5.703130 TCGTCCACACAATTACATCATCAAA 59.297 36.000 0.00 0.00 0.00 2.69
1469 3456 9.178758 GGAAGATAAATTAACACACTTCATCCT 57.821 33.333 0.00 0.00 35.48 3.24
1474 3461 8.336801 ACAGGGAAGATAAATTAACACACTTC 57.663 34.615 0.00 0.00 33.80 3.01
1521 3666 1.069765 AGACACACTTGAGCACGGG 59.930 57.895 0.00 0.00 0.00 5.28
1523 3668 1.723542 GATCAGACACACTTGAGCACG 59.276 52.381 0.00 0.00 0.00 5.34
1546 3694 2.033299 ACCACAGAATTTTGCGTGTCAG 59.967 45.455 0.00 0.00 0.00 3.51
1852 4004 4.923264 GGAAATAGTCCAAACACGAGAC 57.077 45.455 0.00 0.00 46.97 3.36
1906 4058 6.481434 ACCATACCCTAGTTCACTGATAAC 57.519 41.667 0.00 0.00 0.00 1.89
1914 4066 3.521937 CCAGGAAACCATACCCTAGTTCA 59.478 47.826 0.00 0.00 0.00 3.18
2155 4307 2.053627 CAAATTTTGGCTCACTCGTGC 58.946 47.619 0.97 0.00 0.00 5.34
2284 4452 2.159476 GGTGCTCATGCTTACACACATG 60.159 50.000 0.00 0.00 44.05 3.21
2285 4453 2.086869 GGTGCTCATGCTTACACACAT 58.913 47.619 8.71 0.00 40.48 3.21
2286 4454 1.202746 TGGTGCTCATGCTTACACACA 60.203 47.619 8.71 3.50 40.48 3.72
2287 4455 1.466167 CTGGTGCTCATGCTTACACAC 59.534 52.381 8.71 0.00 40.48 3.82
2288 4456 1.611410 CCTGGTGCTCATGCTTACACA 60.611 52.381 8.71 0.00 40.48 3.72
2289 4457 1.089920 CCTGGTGCTCATGCTTACAC 58.910 55.000 0.00 0.00 40.48 2.90
2290 4458 0.983467 TCCTGGTGCTCATGCTTACA 59.017 50.000 0.00 0.00 40.48 2.41
2291 4459 2.338577 ATCCTGGTGCTCATGCTTAC 57.661 50.000 0.00 0.00 40.48 2.34
2297 4465 2.450476 GGTCAAAATCCTGGTGCTCAT 58.550 47.619 0.00 0.00 0.00 2.90
2350 4518 1.147376 CCACCTCGTGTTGGGTTGA 59.853 57.895 0.00 0.00 32.95 3.18
2439 4607 1.750206 TCATCATTTGGATTGGTGCCG 59.250 47.619 0.00 0.00 32.57 5.69
3246 5416 7.287810 AGGTTTTGGTTTTAGTCTGTACATCT 58.712 34.615 0.00 0.84 0.00 2.90
3395 5565 4.780021 ACAGACAATGGATCAGGTTAGAGT 59.220 41.667 0.00 0.00 0.00 3.24
3409 5579 7.212274 TGATCCATACTACATGACAGACAATG 58.788 38.462 0.00 3.93 0.00 2.82
3471 5641 1.375908 TTGGCACGCTAGAAGCAGG 60.376 57.895 0.00 0.00 42.58 4.85
3580 5750 4.165180 TGCCATGTGGGTTTCTATTAGCTA 59.835 41.667 0.54 0.00 39.65 3.32
3647 5817 1.761784 CTAGGAGGCACTGAAGCATCT 59.238 52.381 10.17 2.94 44.17 2.90
3670 5840 1.909700 AGTAGTTGCACCATGTTGGG 58.090 50.000 0.00 0.00 43.37 4.12
3701 5871 9.482627 GAGTAGTTGTTAGATCCAGGAATATTG 57.517 37.037 0.00 0.00 0.00 1.90
3882 6052 5.306678 GGTTGATCTCTTCAGTCCTGGATAT 59.693 44.000 0.00 0.00 35.27 1.63
3907 6077 2.651642 AGACTTCCTTTCCCTAGGCT 57.348 50.000 2.05 0.00 35.15 4.58
4072 6242 4.272018 CAGCTGATTCATAAGCACCAGTAC 59.728 45.833 8.42 0.00 42.06 2.73
4092 6262 6.073548 GGTGTAGTGTCATTCATATAAGCAGC 60.074 42.308 0.00 0.00 0.00 5.25
4138 6308 8.655935 AAAACTCTTACCATCCTTCATCAAAT 57.344 30.769 0.00 0.00 0.00 2.32
4193 6363 6.286758 TCTTGCATTACTTGAGATCATCCTC 58.713 40.000 0.00 0.00 0.00 3.71
4225 6395 3.250040 GCGGTTTGTTTCTGCTCTTTCTA 59.750 43.478 0.00 0.00 34.72 2.10
4440 6610 2.479566 TCAAACTGGTGATCCTCAGC 57.520 50.000 11.02 0.00 44.54 4.26
4453 6623 4.590222 ACCTTTCCTCATGCAAATCAAACT 59.410 37.500 0.00 0.00 0.00 2.66
4542 6712 4.479786 AGTGGTTATTCCTGCTCTCTTC 57.520 45.455 0.00 0.00 37.07 2.87
4595 6765 1.228657 GGTTGTCCCAAGACGCACTC 61.229 60.000 0.00 0.00 46.74 3.51
4599 6769 0.534203 TTCTGGTTGTCCCAAGACGC 60.534 55.000 0.00 0.00 46.74 5.19
4715 6885 3.555139 GCATAGTTAGCAGCTCTTCAGTG 59.445 47.826 0.00 0.00 0.00 3.66
4729 6899 2.238646 CCCTTGTGGTCCTGCATAGTTA 59.761 50.000 0.00 0.00 0.00 2.24
4734 6904 0.706433 AATCCCTTGTGGTCCTGCAT 59.294 50.000 0.00 0.00 34.77 3.96
5023 7208 8.719648 GCCTAGATTCATGATCTTCAATAACAG 58.280 37.037 11.34 3.25 42.55 3.16
5060 7254 2.840651 AGAACCTGGTGGATTCTGGTAG 59.159 50.000 0.00 0.00 35.78 3.18
5275 7469 3.681897 GTCATCAGATGTCGCTGAAGTTT 59.318 43.478 10.34 0.00 46.94 2.66
5285 7479 2.793790 GTCATCGCTGTCATCAGATGTC 59.206 50.000 10.34 5.52 43.76 3.06
5367 7561 5.160641 CCCAGAAATTTTGTATTGTGGACG 58.839 41.667 3.52 0.00 41.24 4.79
5427 7621 2.011947 CGATTCTTCAATGCTGGCAGA 58.988 47.619 20.86 3.68 0.00 4.26
5447 7641 4.919754 GTGTCATTCTCTTTGAAATGCACC 59.080 41.667 0.00 0.00 38.29 5.01
5471 7665 1.272490 TCACCCGTCTGTTCAGATGAC 59.728 52.381 19.69 2.90 0.00 3.06
5657 7851 3.589735 TGGTTGGGCTAGAAATTGGACTA 59.410 43.478 0.00 0.00 0.00 2.59
6006 8200 5.160607 TGTACTGAAACCCTGAAGTATGG 57.839 43.478 0.00 0.00 0.00 2.74
6013 8207 3.327757 AGATTGCTGTACTGAAACCCTGA 59.672 43.478 3.61 0.00 0.00 3.86
6052 8246 1.675641 GCTGCGGGAGGTTCAATGT 60.676 57.895 0.00 0.00 0.00 2.71
6079 8273 1.611673 CCGGTTCATCTTCTTGCCACT 60.612 52.381 0.00 0.00 0.00 4.00
6133 8327 1.555967 GGTCTCTGCTGAGGTCTCTT 58.444 55.000 19.23 0.00 40.58 2.85
6266 8460 8.468399 TCTCAAACCGTATACATGTATGTGTAA 58.532 33.333 25.48 4.99 41.89 2.41
6328 8522 5.612725 TTTTTGAAAAGCTCTCCAACCAT 57.387 34.783 0.00 0.00 0.00 3.55
6356 8550 4.956075 AGTCTCTCCAACCATTGTGTTTTT 59.044 37.500 0.00 0.00 0.00 1.94
6357 8551 4.536765 AGTCTCTCCAACCATTGTGTTTT 58.463 39.130 0.00 0.00 0.00 2.43
6358 8552 4.170468 AGTCTCTCCAACCATTGTGTTT 57.830 40.909 0.00 0.00 0.00 2.83
6359 8553 3.864789 AGTCTCTCCAACCATTGTGTT 57.135 42.857 0.00 0.00 0.00 3.32
6360 8554 3.117888 ACAAGTCTCTCCAACCATTGTGT 60.118 43.478 0.00 0.00 0.00 3.72
6361 8555 3.480470 ACAAGTCTCTCCAACCATTGTG 58.520 45.455 0.00 0.00 0.00 3.33
6362 8556 3.864789 ACAAGTCTCTCCAACCATTGT 57.135 42.857 0.00 0.00 0.00 2.71
6363 8557 3.885297 ACAACAAGTCTCTCCAACCATTG 59.115 43.478 0.00 0.00 0.00 2.82
6364 8558 3.885297 CACAACAAGTCTCTCCAACCATT 59.115 43.478 0.00 0.00 0.00 3.16
6365 8559 3.480470 CACAACAAGTCTCTCCAACCAT 58.520 45.455 0.00 0.00 0.00 3.55
6366 8560 2.917933 CACAACAAGTCTCTCCAACCA 58.082 47.619 0.00 0.00 0.00 3.67
6367 8561 1.604278 GCACAACAAGTCTCTCCAACC 59.396 52.381 0.00 0.00 0.00 3.77
6368 8562 1.604278 GGCACAACAAGTCTCTCCAAC 59.396 52.381 0.00 0.00 0.00 3.77
6369 8563 1.476833 GGGCACAACAAGTCTCTCCAA 60.477 52.381 0.00 0.00 0.00 3.53
6370 8564 0.108585 GGGCACAACAAGTCTCTCCA 59.891 55.000 0.00 0.00 0.00 3.86
6371 8565 0.398318 AGGGCACAACAAGTCTCTCC 59.602 55.000 0.00 0.00 0.00 3.71
6372 8566 1.517242 CAGGGCACAACAAGTCTCTC 58.483 55.000 0.00 0.00 0.00 3.20
6373 8567 0.109342 CCAGGGCACAACAAGTCTCT 59.891 55.000 0.00 0.00 0.00 3.10
6374 8568 0.890996 CCCAGGGCACAACAAGTCTC 60.891 60.000 0.00 0.00 0.00 3.36
6375 8569 1.151450 CCCAGGGCACAACAAGTCT 59.849 57.895 0.00 0.00 0.00 3.24
6376 8570 0.109723 TACCCAGGGCACAACAAGTC 59.890 55.000 4.91 0.00 0.00 3.01
6476 8672 7.112009 GTGCGCATAATGTGATTATTACAACAG 59.888 37.037 15.91 0.00 33.34 3.16
6578 8776 3.753193 GCAGGCCAATAATTCCTCTCCAT 60.753 47.826 5.01 0.00 0.00 3.41
6610 8808 1.968493 ACGGCTCTCAAGGACAACTAA 59.032 47.619 0.00 0.00 0.00 2.24
6611 8809 1.272490 CACGGCTCTCAAGGACAACTA 59.728 52.381 0.00 0.00 0.00 2.24
6612 8810 0.034059 CACGGCTCTCAAGGACAACT 59.966 55.000 0.00 0.00 0.00 3.16
6616 8814 2.659610 AGCACGGCTCTCAAGGAC 59.340 61.111 0.00 0.00 30.62 3.85
6628 8826 3.904136 ATTTGAAGTGAAAGGAGCACG 57.096 42.857 0.00 0.00 41.04 5.34
6657 8858 4.240096 TCCGAAGTTTGTCCGAAGTAATC 58.760 43.478 0.00 0.00 0.00 1.75
6683 8884 4.710167 GCGGGGTAAACGGGCAGT 62.710 66.667 0.00 0.00 0.00 4.40
6693 8894 1.022451 GCAAATCTTCACGCGGGGTA 61.022 55.000 9.32 0.00 0.00 3.69
6716 8917 3.270877 GCTCCAATTGTACCACTACTGG 58.729 50.000 4.43 0.00 44.26 4.00
6762 8965 3.492383 CCGCACATCATGTTCTAGTGATC 59.508 47.826 0.00 0.00 32.98 2.92
6883 9168 9.836076 GGATTACCTCTTGTATTGTAAACAAAC 57.164 33.333 0.00 1.39 39.55 2.93
6982 10693 9.558396 TTTTTAATGTTTTCCTTCATCTGCATT 57.442 25.926 0.00 0.00 0.00 3.56
7023 10734 8.787852 TGTGTATTGTTGTTAATGTGCTGAATA 58.212 29.630 0.00 0.00 0.00 1.75
7061 10772 6.107343 GGAAGTACAGAGTGGATTTTAGTCC 58.893 44.000 0.00 0.00 38.81 3.85
7176 10888 7.197071 TGTGGTACATTATGTCAACAAGTTC 57.803 36.000 0.00 0.00 44.52 3.01
7207 10930 9.677567 AATGTGTTACATTATGACAACAAGTTC 57.322 29.630 14.80 7.03 46.11 3.01
7252 10975 1.903404 GGTGGGCCCTTTGTGTCAG 60.903 63.158 25.70 0.00 0.00 3.51
7271 10994 1.176527 CATGCCTCGTCAACCCAATT 58.823 50.000 0.00 0.00 0.00 2.32
7274 10997 2.359850 GCATGCCTCGTCAACCCA 60.360 61.111 6.36 0.00 0.00 4.51
7278 11001 1.965930 GTGTGGCATGCCTCGTCAA 60.966 57.895 35.53 13.42 36.94 3.18
7352 11075 0.994995 CGATTGAGCGAGACACTTGG 59.005 55.000 0.00 0.00 0.00 3.61
7373 11096 1.899437 TTCGGCAAGTGCTAGAGGGG 61.899 60.000 2.85 0.00 41.70 4.79
7389 11112 1.310933 ATGCTCAGCTTGCCCTTTCG 61.311 55.000 0.00 0.00 0.00 3.46
7408 11131 1.879380 CAATGTTCGCCTCCAAAGTCA 59.121 47.619 0.00 0.00 0.00 3.41
7455 11178 9.668497 GAAGTAGTACCCAAATCTTTGAGTAAT 57.332 33.333 4.25 3.81 40.55 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.