Multiple sequence alignment - TraesCS3D01G252800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G252800 chr3D 100.000 5912 0 0 1 5912 354082976 354077065 0.000000e+00 10918.0
1 TraesCS3D01G252800 chr3D 97.710 131 3 0 566 696 200396596 200396726 5.960000e-55 226.0
2 TraesCS3D01G252800 chr3D 80.000 240 43 3 2943 3178 520550110 520550348 7.880000e-39 172.0
3 TraesCS3D01G252800 chr3A 93.510 5100 154 51 695 5667 472803544 472798495 0.000000e+00 7420.0
4 TraesCS3D01G252800 chr3A 80.201 596 73 30 9 571 472804126 472803543 7.130000e-109 405.0
5 TraesCS3D01G252800 chr3A 80.451 399 57 14 2919 3302 581433521 581433913 9.700000e-73 285.0
6 TraesCS3D01G252800 chr3A 84.103 195 19 6 5724 5912 472798474 472798286 1.690000e-40 178.0
7 TraesCS3D01G252800 chr3A 83.721 129 20 1 3857 3985 519750073 519750200 2.890000e-23 121.0
8 TraesCS3D01G252800 chr3A 83.871 124 14 4 3052 3171 512033365 512033244 4.840000e-21 113.0
9 TraesCS3D01G252800 chr3A 79.641 167 19 7 1776 1938 715583710 715583555 8.100000e-19 106.0
10 TraesCS3D01G252800 chr3B 96.374 1186 25 8 3497 4668 454716649 454715468 0.000000e+00 1936.0
11 TraesCS3D01G252800 chr3B 95.048 626 18 10 695 1311 454724271 454723650 0.000000e+00 972.0
12 TraesCS3D01G252800 chr3B 94.961 516 17 6 4665 5177 454715346 454714837 0.000000e+00 800.0
13 TraesCS3D01G252800 chr3B 90.205 633 24 13 1304 1900 454723428 454722798 0.000000e+00 791.0
14 TraesCS3D01G252800 chr3B 98.731 394 5 0 3123 3516 454719864 454719471 0.000000e+00 701.0
15 TraesCS3D01G252800 chr3B 93.872 359 16 2 1899 2254 454722171 454722526 2.420000e-148 536.0
16 TraesCS3D01G252800 chr3B 79.951 409 30 21 5289 5665 454714682 454714294 2.730000e-63 254.0
17 TraesCS3D01G252800 chr3B 90.909 143 12 1 429 571 454724411 454724270 2.170000e-44 191.0
18 TraesCS3D01G252800 chr3B 87.097 93 7 4 5718 5806 454714297 454714206 3.770000e-17 100.0
19 TraesCS3D01G252800 chr2A 84.545 550 69 8 3118 3661 1153824 1154363 1.130000e-146 531.0
20 TraesCS3D01G252800 chr5A 84.229 558 72 8 3110 3661 674966216 674965669 4.060000e-146 529.0
21 TraesCS3D01G252800 chr5A 80.808 396 55 14 2922 3302 137292221 137291832 2.080000e-74 291.0
22 TraesCS3D01G252800 chr5A 80.702 399 56 15 2919 3302 638445696 638446088 2.080000e-74 291.0
23 TraesCS3D01G252800 chr5A 91.026 156 10 4 561 712 495480932 495481087 2.160000e-49 207.0
24 TraesCS3D01G252800 chr4B 82.979 564 66 17 2919 3467 265546102 265546650 3.200000e-132 483.0
25 TraesCS3D01G252800 chr4B 80.570 597 86 12 3291 3874 419762867 419762288 3.270000e-117 433.0
26 TraesCS3D01G252800 chr4B 92.308 156 8 4 561 712 518922524 518922679 9.980000e-53 219.0
27 TraesCS3D01G252800 chr2B 80.782 588 92 14 3295 3871 59693007 59693584 1.960000e-119 440.0
28 TraesCS3D01G252800 chr2B 81.108 397 51 16 2922 3302 788730038 788729650 4.480000e-76 296.0
29 TraesCS3D01G252800 chr2B 91.083 157 10 4 561 713 22079555 22079711 6.000000e-50 209.0
30 TraesCS3D01G252800 chr2B 86.022 186 16 3 3283 3467 788729639 788729463 2.170000e-44 191.0
31 TraesCS3D01G252800 chr1B 80.000 400 58 14 2919 3302 51394207 51394600 5.840000e-70 276.0
32 TraesCS3D01G252800 chr1B 86.022 186 16 3 3283 3467 51394611 51394787 2.170000e-44 191.0
33 TraesCS3D01G252800 chr1B 82.796 186 32 0 3295 3480 613234312 613234127 3.660000e-37 167.0
34 TraesCS3D01G252800 chr1B 83.636 110 16 2 3850 3958 429595915 429596023 1.050000e-17 102.0
35 TraesCS3D01G252800 chr5B 96.269 134 5 0 565 698 316240545 316240412 2.770000e-53 220.0
36 TraesCS3D01G252800 chr5B 85.156 128 18 1 3857 3984 54715678 54715552 4.810000e-26 130.0
37 TraesCS3D01G252800 chr5B 82.946 129 21 1 3857 3985 328373997 328373870 1.350000e-21 115.0
38 TraesCS3D01G252800 chr1A 94.366 142 8 0 565 706 276432082 276431941 9.980000e-53 219.0
39 TraesCS3D01G252800 chr1A 81.250 112 17 3 3850 3958 398459556 398459666 2.940000e-13 87.9
40 TraesCS3D01G252800 chr7A 93.662 142 9 0 565 706 201004366 201004507 4.640000e-51 213.0
41 TraesCS3D01G252800 chr7A 86.010 193 18 2 3275 3467 714994208 714994025 1.300000e-46 198.0
42 TraesCS3D01G252800 chr1D 93.706 143 7 2 565 706 247418715 247418574 4.640000e-51 213.0
43 TraesCS3D01G252800 chr1D 81.081 111 18 2 3850 3958 317438171 317438280 1.060000e-12 86.1
44 TraesCS3D01G252800 chr7B 92.000 150 10 2 565 712 485509888 485509739 6.000000e-50 209.0
45 TraesCS3D01G252800 chr4A 79.096 177 34 2 2934 3109 666778839 666779013 1.040000e-22 119.0
46 TraesCS3D01G252800 chr2D 85.981 107 13 2 3862 3967 372929920 372929815 4.840000e-21 113.0
47 TraesCS3D01G252800 chr6A 84.946 93 13 1 951 1043 346137326 346137417 6.310000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G252800 chr3D 354077065 354082976 5911 True 10918.000000 10918 100.0000 1 5912 1 chr3D.!!$R1 5911
1 TraesCS3D01G252800 chr3A 472798286 472804126 5840 True 2667.666667 7420 85.9380 9 5912 3 chr3A.!!$R3 5903
2 TraesCS3D01G252800 chr3B 454714206 454724411 10205 True 718.125000 1936 91.6595 429 5806 8 chr3B.!!$R1 5377
3 TraesCS3D01G252800 chr2A 1153824 1154363 539 False 531.000000 531 84.5450 3118 3661 1 chr2A.!!$F1 543
4 TraesCS3D01G252800 chr5A 674965669 674966216 547 True 529.000000 529 84.2290 3110 3661 1 chr5A.!!$R2 551
5 TraesCS3D01G252800 chr4B 265546102 265546650 548 False 483.000000 483 82.9790 2919 3467 1 chr4B.!!$F1 548
6 TraesCS3D01G252800 chr4B 419762288 419762867 579 True 433.000000 433 80.5700 3291 3874 1 chr4B.!!$R1 583
7 TraesCS3D01G252800 chr2B 59693007 59693584 577 False 440.000000 440 80.7820 3295 3871 1 chr2B.!!$F2 576
8 TraesCS3D01G252800 chr2B 788729463 788730038 575 True 243.500000 296 83.5650 2922 3467 2 chr2B.!!$R1 545
9 TraesCS3D01G252800 chr1B 51394207 51394787 580 False 233.500000 276 83.0110 2919 3467 2 chr1B.!!$F2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.107654 CAGGCTAGGAAAGAACCGGG 60.108 60.000 6.32 0.00 34.73 5.73 F
1142 1171 0.043637 TGTACCGGGGGATTTCTCCT 59.956 55.000 6.32 0.00 41.74 3.69 F
1871 2187 0.460109 TCCACATGAATCTCCGCACG 60.460 55.000 0.00 0.00 0.00 5.34 F
2534 3589 0.322456 CGCCTTTGGGATTGGACTCA 60.322 55.000 0.00 0.00 33.58 3.41 F
4059 9511 1.212195 GTGGGTGATCTCCCCCTTTAC 59.788 57.143 26.44 15.45 46.48 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1302 1339 0.833287 ATGTAGGGCAGCAGAATCGT 59.167 50.000 0.00 0.00 0.00 3.73 R
2534 3589 0.034380 AGCATTCAGTGGCAGAGCAT 60.034 50.000 0.00 0.00 0.00 3.79 R
3576 9016 2.432444 CAGAAATAACAACCGGGCTGA 58.568 47.619 6.32 0.00 0.00 4.26 R
4254 9710 1.588404 CGGCGACACATTACTAAGCTG 59.412 52.381 0.00 0.00 0.00 4.24 R
5720 11410 0.041663 TTTGGAAAGCTTCGCGAACG 60.042 50.000 19.38 14.99 42.01 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.386768 AGCAGACACGACACATAACTT 57.613 42.857 0.00 0.00 0.00 2.66
26 27 3.318017 AGCAGACACGACACATAACTTC 58.682 45.455 0.00 0.00 0.00 3.01
27 28 2.090658 GCAGACACGACACATAACTTCG 59.909 50.000 0.00 0.00 38.73 3.79
55 56 1.224315 CGATGTGGGATTGGAGCCA 59.776 57.895 0.00 0.00 0.00 4.75
72 73 4.022503 GGAGCCAATGCAGATTTATTCTCC 60.023 45.833 0.00 0.00 41.13 3.71
73 74 4.801164 AGCCAATGCAGATTTATTCTCCT 58.199 39.130 0.00 0.00 41.13 3.69
78 79 1.876156 GCAGATTTATTCTCCTGCCCG 59.124 52.381 0.00 0.00 44.39 6.13
80 81 1.771255 AGATTTATTCTCCTGCCCGCT 59.229 47.619 0.00 0.00 0.00 5.52
100 101 1.183030 GCCCCAACCACCCTAACAAC 61.183 60.000 0.00 0.00 0.00 3.32
105 106 1.611491 CAACCACCCTAACAACGCAAT 59.389 47.619 0.00 0.00 0.00 3.56
107 108 2.706890 ACCACCCTAACAACGCAATAG 58.293 47.619 0.00 0.00 0.00 1.73
112 113 5.278561 CCACCCTAACAACGCAATAGAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
113 114 5.627780 CACCCTAACAACGCAATAGAAAAAC 59.372 40.000 0.00 0.00 0.00 2.43
117 118 4.237349 ACAACGCAATAGAAAAACCCTG 57.763 40.909 0.00 0.00 0.00 4.45
136 137 4.263068 CCCTGCCCCTATGACTATTTACAG 60.263 50.000 0.00 0.00 0.00 2.74
139 140 3.328050 GCCCCTATGACTATTTACAGGCT 59.672 47.826 0.00 0.00 33.86 4.58
141 142 5.337652 GCCCCTATGACTATTTACAGGCTAG 60.338 48.000 0.00 0.00 33.86 3.42
144 145 6.497259 CCCTATGACTATTTACAGGCTAGGAA 59.503 42.308 0.00 0.00 31.28 3.36
150 151 6.651086 ACTATTTACAGGCTAGGAAAGAACC 58.349 40.000 0.00 0.00 0.00 3.62
152 153 0.613777 ACAGGCTAGGAAAGAACCGG 59.386 55.000 0.00 0.00 34.73 5.28
153 154 0.107654 CAGGCTAGGAAAGAACCGGG 60.108 60.000 6.32 0.00 34.73 5.73
154 155 0.252558 AGGCTAGGAAAGAACCGGGA 60.253 55.000 6.32 0.00 34.73 5.14
190 196 4.742649 AGCGGCGGACAGAGAGGA 62.743 66.667 9.78 0.00 0.00 3.71
191 197 4.200283 GCGGCGGACAGAGAGGAG 62.200 72.222 9.78 0.00 0.00 3.69
192 198 3.522731 CGGCGGACAGAGAGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
194 200 2.043852 GCGGACAGAGAGGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
195 201 1.456705 GCGGACAGAGAGGAGGGAT 60.457 63.158 0.00 0.00 0.00 3.85
196 202 1.460273 GCGGACAGAGAGGAGGGATC 61.460 65.000 0.00 0.00 0.00 3.36
197 203 0.825840 CGGACAGAGAGGAGGGATCC 60.826 65.000 1.92 1.92 0.00 3.36
198 204 0.825840 GGACAGAGAGGAGGGATCCG 60.826 65.000 5.45 0.00 34.28 4.18
200 206 1.152567 CAGAGAGGAGGGATCCGCT 60.153 63.158 5.45 3.88 42.62 5.52
203 209 3.984749 GAGGAGGGATCCGCTCGC 61.985 72.222 18.50 13.47 43.09 5.03
245 251 0.530744 GGAAAATCGCCCTCCCAAAC 59.469 55.000 0.00 0.00 0.00 2.93
247 253 0.178947 AAAATCGCCCTCCCAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
251 257 2.598787 CGCCCTCCCAAACCACCTA 61.599 63.158 0.00 0.00 0.00 3.08
254 260 1.685180 GCCCTCCCAAACCACCTATTC 60.685 57.143 0.00 0.00 0.00 1.75
255 261 1.638589 CCCTCCCAAACCACCTATTCA 59.361 52.381 0.00 0.00 0.00 2.57
272 286 6.183361 ACCTATTCATGGGGATAGAGGAAAAC 60.183 42.308 11.06 0.00 31.86 2.43
276 290 1.273953 TGGGGATAGAGGAAAACGGGA 60.274 52.381 0.00 0.00 0.00 5.14
277 291 1.841919 GGGGATAGAGGAAAACGGGAA 59.158 52.381 0.00 0.00 0.00 3.97
279 293 3.542648 GGGATAGAGGAAAACGGGAAAG 58.457 50.000 0.00 0.00 0.00 2.62
284 298 2.709397 AGAGGAAAACGGGAAAGGAGAA 59.291 45.455 0.00 0.00 0.00 2.87
290 304 2.045242 GGGAAAGGAGAACCGGGC 60.045 66.667 6.32 0.00 41.83 6.13
295 309 2.047213 AAAGGAGAACCGGGCGAACA 62.047 55.000 6.32 0.00 41.83 3.18
296 310 2.031465 GGAGAACCGGGCGAACAA 59.969 61.111 6.32 0.00 0.00 2.83
303 317 2.968156 CGGGCGAACAACCAACGA 60.968 61.111 0.00 0.00 0.00 3.85
306 320 2.613506 GGCGAACAACCAACGAGGG 61.614 63.158 0.00 0.00 43.89 4.30
307 321 1.890510 GCGAACAACCAACGAGGGT 60.891 57.895 0.00 0.00 45.04 4.34
320 335 0.969894 CGAGGGTTGTCTCCTTCTGT 59.030 55.000 0.00 0.00 34.21 3.41
322 337 1.971357 GAGGGTTGTCTCCTTCTGTGA 59.029 52.381 0.00 0.00 34.21 3.58
330 345 2.094649 GTCTCCTTCTGTGACGGTTAGG 60.095 54.545 8.41 8.41 0.00 2.69
331 346 1.204941 CTCCTTCTGTGACGGTTAGGG 59.795 57.143 12.87 0.00 0.00 3.53
340 355 4.509616 TGTGACGGTTAGGGATGTAAATG 58.490 43.478 0.00 0.00 0.00 2.32
350 365 7.433680 GTTAGGGATGTAAATGGCAAATAAGG 58.566 38.462 0.00 0.00 0.00 2.69
357 372 2.781403 ATGGCAAATAAGGGGCATCT 57.219 45.000 0.00 0.00 45.90 2.90
361 377 2.765699 GGCAAATAAGGGGCATCTGAAA 59.234 45.455 0.00 0.00 0.00 2.69
364 380 5.052481 GCAAATAAGGGGCATCTGAAATTC 58.948 41.667 0.00 0.00 0.00 2.17
371 387 3.445805 GGGGCATCTGAAATTCCGTTTAA 59.554 43.478 0.00 0.00 0.00 1.52
387 404 7.478520 TCCGTTTAATTAGATTTGCTAGCTC 57.521 36.000 17.23 5.24 0.00 4.09
392 409 8.624776 GTTTAATTAGATTTGCTAGCTCCACAT 58.375 33.333 17.23 0.39 0.00 3.21
396 413 5.990120 AGATTTGCTAGCTCCACATTTTT 57.010 34.783 17.23 0.00 0.00 1.94
427 450 6.715464 AGCAAATTATTGAACGGTTAGATCG 58.285 36.000 0.00 0.00 38.94 3.69
437 462 2.098770 ACGGTTAGATCGTTAGTGAGGC 59.901 50.000 0.00 0.00 37.61 4.70
453 478 5.876357 AGTGAGGCTAAACAGGATTAAACA 58.124 37.500 0.00 0.00 0.00 2.83
454 479 6.485171 AGTGAGGCTAAACAGGATTAAACAT 58.515 36.000 0.00 0.00 0.00 2.71
476 503 5.465532 TGACCGGTTTACATTACTGTGTA 57.534 39.130 9.42 0.00 36.79 2.90
490 517 4.281947 TGTACGGTGTTGCGCGGA 62.282 61.111 8.83 0.00 0.00 5.54
491 518 3.037249 GTACGGTGTTGCGCGGAA 61.037 61.111 9.68 9.68 0.00 4.30
495 522 2.354188 GGTGTTGCGCGGAAAACC 60.354 61.111 32.89 32.89 0.00 3.27
529 556 3.167013 CTGCTGCACGACAGGATACCT 62.167 57.143 0.00 0.00 46.69 3.08
532 559 5.817700 CTGCTGCACGACAGGATACCTATA 61.818 50.000 0.00 0.00 46.69 1.31
540 567 4.313282 GACAGGATACCTATAAAACCGGC 58.687 47.826 0.00 0.00 29.64 6.13
549 576 0.629058 ATAAAACCGGCAGGACCCAT 59.371 50.000 10.86 0.00 41.02 4.00
571 598 7.345192 CCATAACGCAGTGTCTCATTTTATAC 58.655 38.462 0.00 0.00 45.00 1.47
573 600 6.648725 AACGCAGTGTCTCATTTTATACTC 57.351 37.500 0.00 0.00 45.00 2.59
574 601 5.109903 ACGCAGTGTCTCATTTTATACTCC 58.890 41.667 0.00 0.00 42.51 3.85
575 602 4.508124 CGCAGTGTCTCATTTTATACTCCC 59.492 45.833 0.00 0.00 0.00 4.30
576 603 5.675538 GCAGTGTCTCATTTTATACTCCCT 58.324 41.667 0.00 0.00 0.00 4.20
577 604 5.755861 GCAGTGTCTCATTTTATACTCCCTC 59.244 44.000 0.00 0.00 0.00 4.30
578 605 6.407525 GCAGTGTCTCATTTTATACTCCCTCT 60.408 42.308 0.00 0.00 0.00 3.69
579 606 6.983307 CAGTGTCTCATTTTATACTCCCTCTG 59.017 42.308 0.00 0.00 0.00 3.35
580 607 6.670027 AGTGTCTCATTTTATACTCCCTCTGT 59.330 38.462 0.00 0.00 0.00 3.41
581 608 6.981559 GTGTCTCATTTTATACTCCCTCTGTC 59.018 42.308 0.00 0.00 0.00 3.51
582 609 6.098409 TGTCTCATTTTATACTCCCTCTGTCC 59.902 42.308 0.00 0.00 0.00 4.02
583 610 5.302059 TCTCATTTTATACTCCCTCTGTCCG 59.698 44.000 0.00 0.00 0.00 4.79
584 611 5.205821 TCATTTTATACTCCCTCTGTCCGA 58.794 41.667 0.00 0.00 0.00 4.55
585 612 5.659525 TCATTTTATACTCCCTCTGTCCGAA 59.340 40.000 0.00 0.00 0.00 4.30
586 613 6.155565 TCATTTTATACTCCCTCTGTCCGAAA 59.844 38.462 0.00 0.00 0.00 3.46
587 614 6.363167 TTTTATACTCCCTCTGTCCGAAAA 57.637 37.500 0.00 0.00 0.00 2.29
588 615 6.555463 TTTATACTCCCTCTGTCCGAAAAT 57.445 37.500 0.00 0.00 0.00 1.82
589 616 7.664552 TTTATACTCCCTCTGTCCGAAAATA 57.335 36.000 0.00 0.00 0.00 1.40
590 617 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
591 618 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
592 619 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
593 620 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
594 621 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
595 622 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
596 623 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
597 624 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
598 625 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
599 626 5.789521 TCTGTCCGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
600 627 6.227522 TCTGTCCGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
601 628 6.708502 TCTGTCCGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
602 629 7.227711 TCTGTCCGAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
603 630 7.881142 TGTCCGAAAATACTTGTCATCAAAAT 58.119 30.769 0.00 0.00 32.87 1.82
604 631 7.807433 TGTCCGAAAATACTTGTCATCAAAATG 59.193 33.333 0.00 0.00 32.87 2.32
605 632 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
606 633 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
607 634 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
615 642 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
653 680 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
660 687 8.152023 ACATCTAGATACATCCCCTTTTATCC 57.848 38.462 4.54 0.00 0.00 2.59
661 688 6.852420 TCTAGATACATCCCCTTTTATCCG 57.148 41.667 0.00 0.00 0.00 4.18
662 689 6.320518 TCTAGATACATCCCCTTTTATCCGT 58.679 40.000 0.00 0.00 0.00 4.69
663 690 5.906772 AGATACATCCCCTTTTATCCGTT 57.093 39.130 0.00 0.00 0.00 4.44
664 691 6.262056 AGATACATCCCCTTTTATCCGTTT 57.738 37.500 0.00 0.00 0.00 3.60
665 692 6.669631 AGATACATCCCCTTTTATCCGTTTT 58.330 36.000 0.00 0.00 0.00 2.43
666 693 6.546034 AGATACATCCCCTTTTATCCGTTTTG 59.454 38.462 0.00 0.00 0.00 2.44
667 694 4.668636 ACATCCCCTTTTATCCGTTTTGA 58.331 39.130 0.00 0.00 0.00 2.69
668 695 5.269189 ACATCCCCTTTTATCCGTTTTGAT 58.731 37.500 0.00 0.00 0.00 2.57
669 696 5.127031 ACATCCCCTTTTATCCGTTTTGATG 59.873 40.000 0.00 0.00 33.80 3.07
670 697 4.924625 TCCCCTTTTATCCGTTTTGATGA 58.075 39.130 0.00 0.00 0.00 2.92
671 698 4.703093 TCCCCTTTTATCCGTTTTGATGAC 59.297 41.667 0.00 0.00 0.00 3.06
672 699 4.461081 CCCCTTTTATCCGTTTTGATGACA 59.539 41.667 0.00 0.00 0.00 3.58
673 700 5.047660 CCCCTTTTATCCGTTTTGATGACAA 60.048 40.000 0.00 0.00 0.00 3.18
674 701 6.092748 CCCTTTTATCCGTTTTGATGACAAG 58.907 40.000 0.00 0.00 37.32 3.16
675 702 6.294508 CCCTTTTATCCGTTTTGATGACAAGT 60.295 38.462 0.00 0.00 37.32 3.16
676 703 7.094549 CCCTTTTATCCGTTTTGATGACAAGTA 60.095 37.037 0.00 0.00 37.32 2.24
677 704 8.458843 CCTTTTATCCGTTTTGATGACAAGTAT 58.541 33.333 0.00 0.00 37.32 2.12
678 705 9.840427 CTTTTATCCGTTTTGATGACAAGTATT 57.160 29.630 0.00 0.00 37.32 1.89
682 709 7.922505 TCCGTTTTGATGACAAGTATTTTTG 57.077 32.000 0.00 0.00 37.32 2.44
683 710 6.920758 TCCGTTTTGATGACAAGTATTTTTGG 59.079 34.615 0.00 0.00 37.32 3.28
684 711 6.920758 CCGTTTTGATGACAAGTATTTTTGGA 59.079 34.615 0.00 0.00 37.32 3.53
685 712 7.096230 CCGTTTTGATGACAAGTATTTTTGGAC 60.096 37.037 0.00 0.00 37.32 4.02
686 713 7.357206 CGTTTTGATGACAAGTATTTTTGGACG 60.357 37.037 0.00 0.00 37.32 4.79
687 714 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
688 715 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
689 716 5.411361 TGATGACAAGTATTTTTGGACGGAG 59.589 40.000 0.00 0.00 32.32 4.63
690 717 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
691 718 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
692 719 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
693 720 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
694 721 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
695 722 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
696 723 4.720273 AGTATTTTTGGACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
697 724 4.586306 ATTTTTGGACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
698 725 5.703730 ATTTTTGGACGGAGGGAGTATTA 57.296 39.130 0.00 0.00 0.00 0.98
699 726 5.703730 TTTTTGGACGGAGGGAGTATTAT 57.296 39.130 0.00 0.00 0.00 1.28
700 727 6.811634 TTTTTGGACGGAGGGAGTATTATA 57.188 37.500 0.00 0.00 0.00 0.98
701 728 5.796424 TTTGGACGGAGGGAGTATTATAC 57.204 43.478 0.00 0.00 0.00 1.47
702 729 4.736611 TGGACGGAGGGAGTATTATACT 57.263 45.455 4.35 4.35 42.86 2.12
736 764 4.142469 GGAATTCACCGTGTCCCAATTAAG 60.142 45.833 7.93 0.00 0.00 1.85
799 827 0.743345 GCCGTGCTTTTATCGGACCT 60.743 55.000 7.01 0.00 46.05 3.85
998 1026 3.532155 GCGATCGAGGGGAGCAGT 61.532 66.667 21.57 0.00 0.00 4.40
1073 1101 4.988598 CTCCCGCAAGTGCACCGT 62.989 66.667 14.63 0.00 42.21 4.83
1142 1171 0.043637 TGTACCGGGGGATTTCTCCT 59.956 55.000 6.32 0.00 41.74 3.69
1259 1289 3.467803 AGCTGAATCGCTGGTAAATACC 58.532 45.455 2.53 2.53 46.62 2.73
1358 1624 2.149973 AGGATGTGATTTTGGGAGGC 57.850 50.000 0.00 0.00 0.00 4.70
1388 1654 1.411977 TGTGTGATTTGGGGCAAGTTG 59.588 47.619 0.00 0.00 0.00 3.16
1440 1732 6.280643 GGGGCAGTATGTGATTTTTATTTCC 58.719 40.000 0.00 0.00 39.31 3.13
1667 1959 3.119637 GCGGTGAGCTCTCTATTCCTATC 60.120 52.174 16.19 0.00 44.04 2.08
1690 1982 7.275888 TCAATTCAATTGCCACATAGATACC 57.724 36.000 5.12 0.00 40.05 2.73
1691 1983 7.062322 TCAATTCAATTGCCACATAGATACCT 58.938 34.615 5.12 0.00 40.05 3.08
1693 1985 7.902920 ATTCAATTGCCACATAGATACCTTT 57.097 32.000 0.00 0.00 0.00 3.11
1694 1986 7.716799 TTCAATTGCCACATAGATACCTTTT 57.283 32.000 0.00 0.00 0.00 2.27
1696 1988 8.815565 TCAATTGCCACATAGATACCTTTTAA 57.184 30.769 0.00 0.00 0.00 1.52
1721 2037 7.566760 TTAATGTGGCACTATTAGGTGATTG 57.433 36.000 19.83 0.00 39.34 2.67
1736 2052 1.962807 TGATTGGGTTGGTGCTGAAAG 59.037 47.619 0.00 0.00 0.00 2.62
1751 2067 5.860716 GTGCTGAAAGGATGATCAAAACTTC 59.139 40.000 0.00 1.93 35.94 3.01
1869 2185 2.684374 CAAATCCACATGAATCTCCGCA 59.316 45.455 0.00 0.00 0.00 5.69
1871 2187 0.460109 TCCACATGAATCTCCGCACG 60.460 55.000 0.00 0.00 0.00 5.34
1902 2218 6.723298 ATGGTGGAGTTAGATGAGACTTAG 57.277 41.667 0.00 0.00 0.00 2.18
1936 2845 6.068461 TCTAGATGAGAACTAGACACACCT 57.932 41.667 0.00 0.00 40.57 4.00
1957 2866 6.253298 CACCTATTGTTTATTCAATTGTGGCG 59.747 38.462 5.13 0.00 38.68 5.69
1979 2888 5.479306 CGGTATCCCTAATATTGGTCAGTG 58.521 45.833 0.00 0.00 0.00 3.66
2012 2921 6.486253 TGAATCTTATTGGCGCTTATGATC 57.514 37.500 7.64 5.92 0.00 2.92
2231 3140 1.358787 TGTCAATTGGGCCATTCTCCT 59.641 47.619 7.26 0.00 0.00 3.69
2364 3273 6.152661 TCACCCCAAATAATGAAGATCACAAC 59.847 38.462 0.00 0.00 0.00 3.32
2472 3527 7.520614 GCACTCTACATACTTTGCTGAGTTTTT 60.521 37.037 0.00 0.00 38.40 1.94
2513 3568 0.968405 TTTTGCATTGTCCTCTGGCC 59.032 50.000 0.00 0.00 0.00 5.36
2515 3570 2.440980 GCATTGTCCTCTGGCCCC 60.441 66.667 0.00 0.00 0.00 5.80
2516 3571 2.124570 CATTGTCCTCTGGCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
2517 3572 4.115199 ATTGTCCTCTGGCCCCGC 62.115 66.667 0.00 0.00 0.00 6.13
2531 3586 3.603365 CCGCCTTTGGGATTGGAC 58.397 61.111 0.00 0.00 33.58 4.02
2532 3587 1.000896 CCGCCTTTGGGATTGGACT 60.001 57.895 0.00 0.00 33.58 3.85
2533 3588 1.032114 CCGCCTTTGGGATTGGACTC 61.032 60.000 0.00 0.00 33.58 3.36
2534 3589 0.322456 CGCCTTTGGGATTGGACTCA 60.322 55.000 0.00 0.00 33.58 3.41
2535 3590 1.683011 CGCCTTTGGGATTGGACTCAT 60.683 52.381 0.00 0.00 33.58 2.90
2536 3591 1.753073 GCCTTTGGGATTGGACTCATG 59.247 52.381 0.00 0.00 33.58 3.07
2537 3592 1.753073 CCTTTGGGATTGGACTCATGC 59.247 52.381 0.00 0.00 33.58 4.06
2538 3593 2.622452 CCTTTGGGATTGGACTCATGCT 60.622 50.000 0.00 0.00 33.58 3.79
2539 3594 2.425143 TTGGGATTGGACTCATGCTC 57.575 50.000 0.00 0.00 0.00 4.26
2540 3595 1.588239 TGGGATTGGACTCATGCTCT 58.412 50.000 0.00 0.00 0.00 4.09
2715 3771 8.575565 TCACTAACTATGATTGCTTCGTAATC 57.424 34.615 0.00 0.00 35.70 1.75
2798 3854 7.233348 AGTGGAAACAGTGATGGAAACAATAAT 59.767 33.333 0.00 0.00 44.06 1.28
3132 5693 4.936891 AGTTCTTGCAATGTTGTCTTTCC 58.063 39.130 0.00 0.00 0.00 3.13
3576 9016 6.661304 AGCTCTTTTGTTCATCATTCCTTT 57.339 33.333 0.00 0.00 0.00 3.11
3719 9171 8.377799 TGCAGGATCTATTATCAAAATAGAGCA 58.622 33.333 19.09 15.39 43.62 4.26
4059 9511 1.212195 GTGGGTGATCTCCCCCTTTAC 59.788 57.143 26.44 15.45 46.48 2.01
4254 9710 8.418597 TGAATAGTGAGTATATTCTGGTACCC 57.581 38.462 10.07 0.00 39.39 3.69
4401 9857 9.756461 GAAGTTAAAACAAATATCTCTTCCGTC 57.244 33.333 0.00 0.00 0.00 4.79
4419 9880 9.535170 TCTTCCGTCTATTCTCTTGGATATTAT 57.465 33.333 0.00 0.00 0.00 1.28
4474 9935 1.284715 CAGCGTATGCATGCCATGG 59.715 57.895 16.68 7.63 46.23 3.66
4532 9993 9.638239 TTTATTCCTGCAAAATTCATCAGTTAC 57.362 29.630 0.00 0.00 0.00 2.50
4960 10553 7.184800 TGTATGTGTTCAGTAATTGTGTGAC 57.815 36.000 0.00 0.00 0.00 3.67
5028 10621 1.702957 TCGGAAGTTCATTGGTTCCCT 59.297 47.619 5.01 0.00 37.09 4.20
5030 10623 3.521937 TCGGAAGTTCATTGGTTCCCTAT 59.478 43.478 5.01 0.00 37.09 2.57
5032 10625 5.190132 TCGGAAGTTCATTGGTTCCCTATAA 59.810 40.000 5.01 0.00 37.09 0.98
5034 10627 6.183360 CGGAAGTTCATTGGTTCCCTATAAAC 60.183 42.308 5.01 0.00 37.09 2.01
5035 10628 6.661805 GGAAGTTCATTGGTTCCCTATAAACA 59.338 38.462 5.01 0.00 34.72 2.83
5039 10632 9.100197 AGTTCATTGGTTCCCTATAAACATTTT 57.900 29.630 0.00 0.00 0.00 1.82
5164 10759 8.846943 AAAAACAAAAGTGGAAAAGAAGATGT 57.153 26.923 0.00 0.00 0.00 3.06
5177 10772 7.337942 GGAAAAGAAGATGTCCTGTGTTGATAT 59.662 37.037 0.00 0.00 0.00 1.63
5179 10774 8.723942 AAAGAAGATGTCCTGTGTTGATATAC 57.276 34.615 0.00 0.00 0.00 1.47
5201 10796 6.479972 ACTACTACCTGCTTGCATATGTTA 57.520 37.500 4.29 0.00 0.00 2.41
5203 10798 8.190326 ACTACTACCTGCTTGCATATGTTATA 57.810 34.615 4.29 0.00 0.00 0.98
5360 11013 2.027625 GTCGAGGTTGGGTTGCGAG 61.028 63.158 0.00 0.00 0.00 5.03
5362 11015 1.597027 CGAGGTTGGGTTGCGAGTT 60.597 57.895 0.00 0.00 0.00 3.01
5363 11016 1.841663 CGAGGTTGGGTTGCGAGTTG 61.842 60.000 0.00 0.00 0.00 3.16
5373 11026 2.846918 GCGAGTTGCGACAGACAC 59.153 61.111 6.90 0.00 44.57 3.67
5432 11094 1.304282 GCATGCAGAAGGGAGGGAA 59.696 57.895 14.21 0.00 0.00 3.97
5495 11175 0.820891 AGGCTTTGATATGCTGCCCG 60.821 55.000 0.00 0.00 44.19 6.13
5515 11205 2.525368 GTTTGGGTAAGGCCAGTGATT 58.475 47.619 5.01 0.00 39.65 2.57
5576 11266 1.610554 TAGGGAAGGAAGGAACGCCG 61.611 60.000 0.00 0.00 39.96 6.46
5585 11275 1.469335 AAGGAACGCCGGAGAACTCA 61.469 55.000 13.83 0.00 39.96 3.41
5592 11282 1.722011 GCCGGAGAACTCATTCGAAA 58.278 50.000 5.05 0.00 40.04 3.46
5609 11299 2.379005 GAAAGGGGGATCGCATCTTTT 58.621 47.619 21.95 11.64 0.00 2.27
5617 11307 3.488216 GGGATCGCATCTTTTCTTTGCTC 60.488 47.826 4.64 0.00 34.23 4.26
5618 11308 3.488216 GGATCGCATCTTTTCTTTGCTCC 60.488 47.826 0.00 0.00 34.23 4.70
5629 11319 1.901650 CTTTGCTCCGGTCTGCGAAC 61.902 60.000 0.00 0.00 0.00 3.95
5630 11320 4.717629 TGCTCCGGTCTGCGAACG 62.718 66.667 0.00 8.68 42.95 3.95
5641 11331 0.721154 CTGCGAACGCTGCTGAATAA 59.279 50.000 19.32 0.00 42.51 1.40
5665 11355 1.573829 GCGTCACCGAAGCCATTTCA 61.574 55.000 0.00 0.00 35.43 2.69
5666 11356 1.086696 CGTCACCGAAGCCATTTCAT 58.913 50.000 0.00 0.00 35.43 2.57
5667 11357 1.468520 CGTCACCGAAGCCATTTCATT 59.531 47.619 0.00 0.00 35.43 2.57
5668 11358 2.095263 CGTCACCGAAGCCATTTCATTT 60.095 45.455 0.00 0.00 35.43 2.32
5669 11359 3.501950 GTCACCGAAGCCATTTCATTTC 58.498 45.455 0.00 0.00 35.43 2.17
5670 11360 3.057596 GTCACCGAAGCCATTTCATTTCA 60.058 43.478 0.00 0.00 35.43 2.69
5671 11361 3.763360 TCACCGAAGCCATTTCATTTCAT 59.237 39.130 0.00 0.00 35.43 2.57
5672 11362 4.220382 TCACCGAAGCCATTTCATTTCATT 59.780 37.500 0.00 0.00 35.43 2.57
5673 11363 4.931002 CACCGAAGCCATTTCATTTCATTT 59.069 37.500 0.00 0.00 35.43 2.32
5674 11364 5.062558 CACCGAAGCCATTTCATTTCATTTC 59.937 40.000 0.00 0.00 35.43 2.17
5675 11365 4.567959 CCGAAGCCATTTCATTTCATTTCC 59.432 41.667 0.00 0.00 35.43 3.13
5676 11366 5.413499 CGAAGCCATTTCATTTCATTTCCT 58.587 37.500 0.00 0.00 35.43 3.36
5677 11367 5.517770 CGAAGCCATTTCATTTCATTTCCTC 59.482 40.000 0.00 0.00 35.43 3.71
5678 11368 5.349061 AGCCATTTCATTTCATTTCCTCC 57.651 39.130 0.00 0.00 0.00 4.30
5679 11369 4.114794 GCCATTTCATTTCATTTCCTCCG 58.885 43.478 0.00 0.00 0.00 4.63
5680 11370 4.114794 CCATTTCATTTCATTTCCTCCGC 58.885 43.478 0.00 0.00 0.00 5.54
5681 11371 4.381825 CCATTTCATTTCATTTCCTCCGCA 60.382 41.667 0.00 0.00 0.00 5.69
5687 11377 1.766494 TCATTTCCTCCGCATGCATT 58.234 45.000 19.57 0.00 0.00 3.56
5695 11385 1.808945 CTCCGCATGCATTTATCTCCC 59.191 52.381 19.57 0.00 0.00 4.30
5703 11393 2.017049 GCATTTATCTCCCGCTGTGTT 58.983 47.619 0.00 0.00 0.00 3.32
5704 11394 2.223340 GCATTTATCTCCCGCTGTGTTG 60.223 50.000 0.00 0.00 0.00 3.33
5705 11395 2.851263 TTTATCTCCCGCTGTGTTGT 57.149 45.000 0.00 0.00 0.00 3.32
5706 11396 3.965379 TTTATCTCCCGCTGTGTTGTA 57.035 42.857 0.00 0.00 0.00 2.41
5707 11397 3.965379 TTATCTCCCGCTGTGTTGTAA 57.035 42.857 0.00 0.00 0.00 2.41
5708 11398 2.386661 ATCTCCCGCTGTGTTGTAAG 57.613 50.000 0.00 0.00 0.00 2.34
5709 11399 0.320421 TCTCCCGCTGTGTTGTAAGC 60.320 55.000 0.00 0.00 36.03 3.09
5714 11404 3.729004 GCTGTGTTGTAAGCGTCAC 57.271 52.632 0.00 0.00 0.00 3.67
5715 11405 0.111266 GCTGTGTTGTAAGCGTCACG 60.111 55.000 0.00 0.00 34.08 4.35
5751 11445 0.732571 TTTCCAAAGCGGCATCGATC 59.267 50.000 1.45 0.00 39.00 3.69
5752 11446 0.392327 TTCCAAAGCGGCATCGATCA 60.392 50.000 1.45 0.00 39.00 2.92
5755 11449 1.135431 CCAAAGCGGCATCGATCAAAA 60.135 47.619 1.45 0.00 39.00 2.44
5757 11451 3.181397 CAAAGCGGCATCGATCAAAATT 58.819 40.909 1.45 0.00 39.00 1.82
5758 11452 2.763249 AGCGGCATCGATCAAAATTC 57.237 45.000 1.45 0.00 39.00 2.17
5760 11454 1.921573 GCGGCATCGATCAAAATTCGG 60.922 52.381 0.00 0.00 39.00 4.30
5762 11456 2.223249 CGGCATCGATCAAAATTCGGTT 60.223 45.455 0.00 0.00 39.00 4.44
5764 11458 3.065371 GGCATCGATCAAAATTCGGTTCT 59.935 43.478 0.00 0.00 37.22 3.01
5811 11505 2.080286 ATCCGTTTCCTCACAAGACG 57.920 50.000 0.00 0.00 0.00 4.18
5812 11506 0.599204 TCCGTTTCCTCACAAGACGC 60.599 55.000 0.00 0.00 32.78 5.19
5813 11507 1.487231 CGTTTCCTCACAAGACGCG 59.513 57.895 3.53 3.53 0.00 6.01
5814 11508 1.860078 GTTTCCTCACAAGACGCGG 59.140 57.895 12.47 0.00 0.00 6.46
5815 11509 0.599204 GTTTCCTCACAAGACGCGGA 60.599 55.000 12.47 0.00 0.00 5.54
5816 11510 0.320374 TTTCCTCACAAGACGCGGAT 59.680 50.000 12.47 0.00 0.00 4.18
5817 11511 0.108804 TTCCTCACAAGACGCGGATC 60.109 55.000 12.47 0.00 0.00 3.36
5819 11513 1.136774 CTCACAAGACGCGGATCGA 59.863 57.895 12.47 0.00 41.67 3.59
5821 11515 1.154016 CACAAGACGCGGATCGACT 60.154 57.895 12.47 0.00 44.44 4.18
5826 11520 0.456221 AGACGCGGATCGACTGATTT 59.544 50.000 12.47 0.00 41.29 2.17
5827 11521 1.135083 AGACGCGGATCGACTGATTTT 60.135 47.619 12.47 0.00 41.29 1.82
5829 11523 2.855963 GACGCGGATCGACTGATTTTTA 59.144 45.455 12.47 0.00 41.67 1.52
5830 11524 3.255725 ACGCGGATCGACTGATTTTTAA 58.744 40.909 12.47 0.00 41.67 1.52
5831 11525 3.869246 ACGCGGATCGACTGATTTTTAAT 59.131 39.130 12.47 0.00 41.67 1.40
5832 11526 4.331717 ACGCGGATCGACTGATTTTTAATT 59.668 37.500 12.47 0.00 41.67 1.40
5834 11528 4.898488 GCGGATCGACTGATTTTTAATTCG 59.102 41.667 0.00 0.00 34.09 3.34
5835 11529 5.501897 GCGGATCGACTGATTTTTAATTCGT 60.502 40.000 0.00 0.00 34.09 3.85
5836 11530 6.291955 GCGGATCGACTGATTTTTAATTCGTA 60.292 38.462 0.00 0.00 34.09 3.43
5840 11536 7.565450 TCGACTGATTTTTAATTCGTAACGA 57.435 32.000 0.00 0.00 0.00 3.85
5876 11572 0.250770 ACCACCCGGAAGAAAGAAGC 60.251 55.000 0.73 0.00 35.59 3.86
5884 11583 1.886861 GAAGAAAGAAGCGCGCGACA 61.887 55.000 37.18 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.661537 TGTCGTGTCTGCTTGGCG 60.662 61.111 0.00 0.00 0.00 5.69
1 2 1.230635 ATGTGTCGTGTCTGCTTGGC 61.231 55.000 0.00 0.00 0.00 4.52
2 3 2.078849 TATGTGTCGTGTCTGCTTGG 57.921 50.000 0.00 0.00 0.00 3.61
3 4 3.059884 AGTTATGTGTCGTGTCTGCTTG 58.940 45.455 0.00 0.00 0.00 4.01
4 5 3.386768 AGTTATGTGTCGTGTCTGCTT 57.613 42.857 0.00 0.00 0.00 3.91
5 6 3.318017 GAAGTTATGTGTCGTGTCTGCT 58.682 45.455 0.00 0.00 0.00 4.24
6 7 2.090658 CGAAGTTATGTGTCGTGTCTGC 59.909 50.000 0.00 0.00 0.00 4.26
7 8 3.561503 TCGAAGTTATGTGTCGTGTCTG 58.438 45.455 0.00 0.00 36.21 3.51
13 14 1.578023 GCGTCTCGAAGTTATGTGTCG 59.422 52.381 0.00 0.00 36.12 4.35
39 40 1.784358 CATTGGCTCCAATCCCACAT 58.216 50.000 10.99 0.00 43.92 3.21
45 46 3.814005 AAATCTGCATTGGCTCCAATC 57.186 42.857 10.99 7.43 43.92 2.67
47 48 4.957954 AGAATAAATCTGCATTGGCTCCAA 59.042 37.500 3.55 3.55 41.91 3.53
59 60 1.876156 GCGGGCAGGAGAATAAATCTG 59.124 52.381 0.00 0.00 38.96 2.90
78 79 3.218386 TTAGGGTGGTTGGGGCAGC 62.218 63.158 0.00 0.00 0.00 5.25
80 81 1.656092 TTGTTAGGGTGGTTGGGGCA 61.656 55.000 0.00 0.00 0.00 5.36
86 87 1.989706 ATTGCGTTGTTAGGGTGGTT 58.010 45.000 0.00 0.00 0.00 3.67
94 95 5.764131 CAGGGTTTTTCTATTGCGTTGTTA 58.236 37.500 0.00 0.00 0.00 2.41
100 101 1.135112 GGGCAGGGTTTTTCTATTGCG 60.135 52.381 0.00 0.00 32.59 4.85
105 106 3.053917 GTCATAGGGGCAGGGTTTTTCTA 60.054 47.826 0.00 0.00 0.00 2.10
107 108 2.100197 GTCATAGGGGCAGGGTTTTTC 58.900 52.381 0.00 0.00 0.00 2.29
112 113 2.514726 AATAGTCATAGGGGCAGGGT 57.485 50.000 0.00 0.00 0.00 4.34
113 114 3.650942 TGTAAATAGTCATAGGGGCAGGG 59.349 47.826 0.00 0.00 0.00 4.45
117 118 3.328050 AGCCTGTAAATAGTCATAGGGGC 59.672 47.826 0.00 0.00 36.51 5.80
136 137 0.107800 GTCCCGGTTCTTTCCTAGCC 60.108 60.000 0.00 0.00 0.00 3.93
139 140 0.117742 AGGGTCCCGGTTCTTTCCTA 59.882 55.000 0.99 0.00 0.00 2.94
141 142 1.298993 GAGGGTCCCGGTTCTTTCC 59.701 63.158 0.99 0.00 0.00 3.13
172 178 3.764466 CCTCTCTGTCCGCCGCTT 61.764 66.667 0.00 0.00 0.00 4.68
176 182 2.937959 ATCCCTCCTCTCTGTCCGCC 62.938 65.000 0.00 0.00 0.00 6.13
181 187 1.456705 GCGGATCCCTCCTCTCTGT 60.457 63.158 6.06 0.00 39.65 3.41
214 220 1.389784 CGATTTTCCCAAAATGTGCGC 59.610 47.619 0.00 0.00 40.97 6.09
223 229 4.755656 GGAGGGCGATTTTCCCAA 57.244 55.556 0.48 0.00 46.36 4.12
245 251 3.521126 CCTCTATCCCCATGAATAGGTGG 59.479 52.174 0.00 2.30 35.22 4.61
247 253 4.785173 TCCTCTATCCCCATGAATAGGT 57.215 45.455 0.00 0.00 0.00 3.08
251 257 4.446311 CCGTTTTCCTCTATCCCCATGAAT 60.446 45.833 0.00 0.00 0.00 2.57
254 260 2.487265 CCCGTTTTCCTCTATCCCCATG 60.487 54.545 0.00 0.00 0.00 3.66
255 261 1.774856 CCCGTTTTCCTCTATCCCCAT 59.225 52.381 0.00 0.00 0.00 4.00
272 286 2.267961 CCCGGTTCTCCTTTCCCG 59.732 66.667 0.00 0.00 40.12 5.14
276 290 1.302271 GTTCGCCCGGTTCTCCTTT 60.302 57.895 0.00 0.00 0.00 3.11
277 291 2.047213 TTGTTCGCCCGGTTCTCCTT 62.047 55.000 0.00 0.00 0.00 3.36
279 293 2.031465 TTGTTCGCCCGGTTCTCC 59.969 61.111 0.00 0.00 0.00 3.71
284 298 2.903350 GTTGGTTGTTCGCCCGGT 60.903 61.111 0.00 0.00 0.00 5.28
290 304 2.697819 AACCCTCGTTGGTTGTTCG 58.302 52.632 9.95 0.00 46.76 3.95
303 317 1.694696 GTCACAGAAGGAGACAACCCT 59.305 52.381 0.00 0.00 35.03 4.34
306 320 1.068741 ACCGTCACAGAAGGAGACAAC 59.931 52.381 6.00 0.00 34.89 3.32
307 321 1.410004 ACCGTCACAGAAGGAGACAA 58.590 50.000 6.00 0.00 34.89 3.18
309 323 2.094649 CCTAACCGTCACAGAAGGAGAC 60.095 54.545 6.00 0.00 34.89 3.36
310 324 2.168496 CCTAACCGTCACAGAAGGAGA 58.832 52.381 6.00 0.00 34.89 3.71
311 325 1.204941 CCCTAACCGTCACAGAAGGAG 59.795 57.143 6.00 0.00 34.89 3.69
312 326 1.203087 TCCCTAACCGTCACAGAAGGA 60.203 52.381 6.00 0.00 34.89 3.36
313 327 1.263356 TCCCTAACCGTCACAGAAGG 58.737 55.000 0.00 0.00 37.23 3.46
315 329 2.253610 ACATCCCTAACCGTCACAGAA 58.746 47.619 0.00 0.00 0.00 3.02
320 335 3.683281 GCCATTTACATCCCTAACCGTCA 60.683 47.826 0.00 0.00 0.00 4.35
322 337 2.240160 TGCCATTTACATCCCTAACCGT 59.760 45.455 0.00 0.00 0.00 4.83
330 345 4.503123 GCCCCTTATTTGCCATTTACATCC 60.503 45.833 0.00 0.00 0.00 3.51
331 346 4.100808 TGCCCCTTATTTGCCATTTACATC 59.899 41.667 0.00 0.00 0.00 3.06
340 355 2.071778 TCAGATGCCCCTTATTTGCC 57.928 50.000 0.00 0.00 0.00 4.52
350 365 4.712122 TTAAACGGAATTTCAGATGCCC 57.288 40.909 3.47 0.00 0.00 5.36
361 377 8.451908 AGCTAGCAAATCTAATTAAACGGAAT 57.548 30.769 18.83 0.00 0.00 3.01
364 380 6.260050 TGGAGCTAGCAAATCTAATTAAACGG 59.740 38.462 18.83 0.00 0.00 4.44
371 387 7.651027 AAAATGTGGAGCTAGCAAATCTAAT 57.349 32.000 18.83 0.00 0.00 1.73
427 450 7.389607 TGTTTAATCCTGTTTAGCCTCACTAAC 59.610 37.037 0.00 0.00 40.63 2.34
434 459 5.652452 GGTCATGTTTAATCCTGTTTAGCCT 59.348 40.000 0.00 0.00 0.00 4.58
436 461 5.448632 CCGGTCATGTTTAATCCTGTTTAGC 60.449 44.000 0.00 0.00 0.00 3.09
437 462 5.646360 ACCGGTCATGTTTAATCCTGTTTAG 59.354 40.000 0.00 0.00 0.00 1.85
453 478 4.901868 ACACAGTAATGTAAACCGGTCAT 58.098 39.130 8.04 4.10 0.00 3.06
454 479 4.339872 ACACAGTAATGTAAACCGGTCA 57.660 40.909 8.04 1.03 0.00 4.02
476 503 3.203412 TTTTCCGCGCAACACCGT 61.203 55.556 8.75 0.00 0.00 4.83
490 517 1.441732 GAACTGACGGCGGTGGTTTT 61.442 55.000 13.24 0.00 32.82 2.43
491 518 1.890510 GAACTGACGGCGGTGGTTT 60.891 57.895 13.24 0.00 32.82 3.27
495 522 3.414700 GCAGAACTGACGGCGGTG 61.415 66.667 13.24 2.89 32.82 4.94
529 556 1.287217 TGGGTCCTGCCGGTTTTATA 58.713 50.000 1.90 0.00 38.44 0.98
532 559 0.406361 TTATGGGTCCTGCCGGTTTT 59.594 50.000 1.90 0.00 38.44 2.43
540 567 0.036388 ACACTGCGTTATGGGTCCTG 60.036 55.000 0.00 0.00 0.00 3.86
549 576 6.755141 GGAGTATAAAATGAGACACTGCGTTA 59.245 38.462 0.00 0.00 0.00 3.18
571 598 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
573 600 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
574 601 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
575 602 5.869344 TGATGACAAGTATTTTCGGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
576 603 5.789521 TGATGACAAGTATTTTCGGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
577 604 6.480524 TTGATGACAAGTATTTTCGGACAG 57.519 37.500 0.00 0.00 0.00 3.51
578 605 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
579 606 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
580 607 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
581 608 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
582 609 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
589 616 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
627 654 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
634 661 9.268282 GGATAAAAGGGGATGTATCTAGATGTA 57.732 37.037 15.79 4.44 0.00 2.29
635 662 7.093289 CGGATAAAAGGGGATGTATCTAGATGT 60.093 40.741 15.79 1.25 0.00 3.06
636 663 7.093289 ACGGATAAAAGGGGATGTATCTAGATG 60.093 40.741 15.79 0.00 0.00 2.90
637 664 6.960542 ACGGATAAAAGGGGATGTATCTAGAT 59.039 38.462 10.73 10.73 0.00 1.98
638 665 6.320518 ACGGATAAAAGGGGATGTATCTAGA 58.679 40.000 0.00 0.00 0.00 2.43
639 666 6.607004 ACGGATAAAAGGGGATGTATCTAG 57.393 41.667 0.00 0.00 0.00 2.43
640 667 7.383156 AAACGGATAAAAGGGGATGTATCTA 57.617 36.000 0.00 0.00 0.00 1.98
641 668 5.906772 AACGGATAAAAGGGGATGTATCT 57.093 39.130 0.00 0.00 0.00 1.98
642 669 6.544564 TCAAAACGGATAAAAGGGGATGTATC 59.455 38.462 0.00 0.00 0.00 2.24
643 670 6.428295 TCAAAACGGATAAAAGGGGATGTAT 58.572 36.000 0.00 0.00 0.00 2.29
644 671 5.817784 TCAAAACGGATAAAAGGGGATGTA 58.182 37.500 0.00 0.00 0.00 2.29
645 672 4.668636 TCAAAACGGATAAAAGGGGATGT 58.331 39.130 0.00 0.00 0.00 3.06
646 673 5.359576 TCATCAAAACGGATAAAAGGGGATG 59.640 40.000 0.00 0.00 0.00 3.51
647 674 5.359860 GTCATCAAAACGGATAAAAGGGGAT 59.640 40.000 0.00 0.00 0.00 3.85
648 675 4.703093 GTCATCAAAACGGATAAAAGGGGA 59.297 41.667 0.00 0.00 0.00 4.81
649 676 4.461081 TGTCATCAAAACGGATAAAAGGGG 59.539 41.667 0.00 0.00 0.00 4.79
650 677 5.637006 TGTCATCAAAACGGATAAAAGGG 57.363 39.130 0.00 0.00 0.00 3.95
651 678 6.677913 ACTTGTCATCAAAACGGATAAAAGG 58.322 36.000 0.00 0.00 32.87 3.11
652 679 9.840427 AATACTTGTCATCAAAACGGATAAAAG 57.160 29.630 0.00 0.00 32.87 2.27
656 683 9.619316 CAAAAATACTTGTCATCAAAACGGATA 57.381 29.630 0.00 0.00 32.87 2.59
657 684 7.598493 CCAAAAATACTTGTCATCAAAACGGAT 59.402 33.333 0.00 0.00 32.87 4.18
658 685 6.920758 CCAAAAATACTTGTCATCAAAACGGA 59.079 34.615 0.00 0.00 32.87 4.69
659 686 6.920758 TCCAAAAATACTTGTCATCAAAACGG 59.079 34.615 0.00 0.00 32.87 4.44
660 687 7.357206 CGTCCAAAAATACTTGTCATCAAAACG 60.357 37.037 0.00 0.00 32.87 3.60
661 688 7.096230 CCGTCCAAAAATACTTGTCATCAAAAC 60.096 37.037 0.00 0.00 32.87 2.43
662 689 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
663 690 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
664 691 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
665 692 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
666 693 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
667 694 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
668 695 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
669 696 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
670 697 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
671 698 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
672 699 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
673 700 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
674 701 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
675 702 5.703730 AATACTCCCTCCGTCCAAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
676 703 4.586306 AATACTCCCTCCGTCCAAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
677 704 5.703730 ATAATACTCCCTCCGTCCAAAAA 57.296 39.130 0.00 0.00 0.00 1.94
678 705 5.901276 AGTATAATACTCCCTCCGTCCAAAA 59.099 40.000 0.00 0.00 32.47 2.44
679 706 5.461327 AGTATAATACTCCCTCCGTCCAAA 58.539 41.667 0.00 0.00 32.47 3.28
680 707 5.070823 AGTATAATACTCCCTCCGTCCAA 57.929 43.478 0.00 0.00 32.47 3.53
681 708 4.736611 AGTATAATACTCCCTCCGTCCA 57.263 45.455 0.00 0.00 32.47 4.02
682 709 6.221659 CAAAAGTATAATACTCCCTCCGTCC 58.778 44.000 0.00 0.00 38.26 4.79
683 710 6.041296 TCCAAAAGTATAATACTCCCTCCGTC 59.959 42.308 0.00 0.00 38.26 4.79
684 711 5.901276 TCCAAAAGTATAATACTCCCTCCGT 59.099 40.000 0.00 0.00 38.26 4.69
685 712 6.415206 TCCAAAAGTATAATACTCCCTCCG 57.585 41.667 0.00 0.00 38.26 4.63
686 713 9.642343 AAAATCCAAAAGTATAATACTCCCTCC 57.358 33.333 0.00 0.00 38.26 4.30
688 715 9.421399 CCAAAATCCAAAAGTATAATACTCCCT 57.579 33.333 0.00 0.00 38.26 4.20
689 716 9.416284 TCCAAAATCCAAAAGTATAATACTCCC 57.584 33.333 0.00 0.00 38.26 4.30
696 723 9.936759 GGTGAATTCCAAAATCCAAAAGTATAA 57.063 29.630 2.27 0.00 0.00 0.98
697 724 8.247562 CGGTGAATTCCAAAATCCAAAAGTATA 58.752 33.333 2.27 0.00 0.00 1.47
698 725 7.096551 CGGTGAATTCCAAAATCCAAAAGTAT 58.903 34.615 2.27 0.00 0.00 2.12
699 726 6.041069 ACGGTGAATTCCAAAATCCAAAAGTA 59.959 34.615 2.27 0.00 0.00 2.24
700 727 5.163353 ACGGTGAATTCCAAAATCCAAAAGT 60.163 36.000 2.27 0.00 0.00 2.66
701 728 5.177327 CACGGTGAATTCCAAAATCCAAAAG 59.823 40.000 0.74 0.00 0.00 2.27
702 729 5.053145 CACGGTGAATTCCAAAATCCAAAA 58.947 37.500 0.74 0.00 0.00 2.44
799 827 1.158963 ATTGGGGGATTTGGGGTGGA 61.159 55.000 0.00 0.00 0.00 4.02
874 902 2.203209 AATTCGATCCGGGCTGCC 60.203 61.111 11.05 11.05 0.00 4.85
998 1026 4.889427 CGAACACCTCGCTCATGA 57.111 55.556 0.00 0.00 41.49 3.07
1118 1147 4.386711 GAGAAATCCCCCGGTACAATTAG 58.613 47.826 0.00 0.00 0.00 1.73
1259 1289 9.853177 AGGAACCTCATAAATAAAATAGACCTG 57.147 33.333 0.00 0.00 0.00 4.00
1278 1315 1.839424 GCATGTAGCCAAAGGAACCT 58.161 50.000 0.00 0.00 37.23 3.50
1302 1339 0.833287 ATGTAGGGCAGCAGAATCGT 59.167 50.000 0.00 0.00 0.00 3.73
1358 1624 3.126858 CCCAAATCACACATTCACCTACG 59.873 47.826 0.00 0.00 0.00 3.51
1388 1654 3.066760 GGCAGTGAAACAAGGGCATATAC 59.933 47.826 0.00 0.00 41.43 1.47
1587 1879 2.889170 TGGTAGTTTGCCTGGCATTA 57.111 45.000 24.03 11.13 38.76 1.90
1667 1959 7.281040 AGGTATCTATGTGGCAATTGAATTG 57.719 36.000 13.32 13.32 43.06 2.32
1693 1985 9.860650 ATCACCTAATAGTGCCACATTAATTAA 57.139 29.630 0.00 0.00 37.68 1.40
1694 1986 9.860650 AATCACCTAATAGTGCCACATTAATTA 57.139 29.630 0.00 0.00 37.68 1.40
1696 1988 7.231317 CCAATCACCTAATAGTGCCACATTAAT 59.769 37.037 0.00 0.00 37.68 1.40
1706 2022 4.640201 CACCAACCCAATCACCTAATAGTG 59.360 45.833 0.00 0.00 39.20 2.74
1721 2037 0.890683 CATCCTTTCAGCACCAACCC 59.109 55.000 0.00 0.00 0.00 4.11
1736 2052 5.352569 AGATGTCACGAAGTTTTGATCATCC 59.647 40.000 0.00 0.00 41.61 3.51
1798 2114 5.617528 TTAAACAGTGTGGGAGTTAGACA 57.382 39.130 0.00 0.00 0.00 3.41
1799 2115 8.611654 TTAATTAAACAGTGTGGGAGTTAGAC 57.388 34.615 0.00 0.00 0.00 2.59
1848 2164 2.684374 TGCGGAGATTCATGTGGATTTG 59.316 45.455 0.00 0.00 0.00 2.32
1858 2174 2.378445 TGATTTCGTGCGGAGATTCA 57.622 45.000 0.00 0.00 0.00 2.57
1869 2185 5.556915 TCTAACTCCACCATTTGATTTCGT 58.443 37.500 0.00 0.00 0.00 3.85
1871 2187 7.554118 TCTCATCTAACTCCACCATTTGATTTC 59.446 37.037 0.00 0.00 0.00 2.17
1932 2841 6.253298 CGCCACAATTGAATAAACAATAGGTG 59.747 38.462 13.59 1.00 40.78 4.00
1936 2845 6.274157 ACCGCCACAATTGAATAAACAATA 57.726 33.333 13.59 0.00 39.19 1.90
1979 2888 8.454106 AGCGCCAATAAGATTCATAATATTGTC 58.546 33.333 2.29 0.00 35.14 3.18
1988 2897 6.656270 TGATCATAAGCGCCAATAAGATTCAT 59.344 34.615 2.29 0.00 0.00 2.57
2085 2994 1.881973 ACCAAGTAGTGTGCAGCATTG 59.118 47.619 0.00 0.00 0.00 2.82
2231 3140 6.778834 AAGCATCCAAACATGTCAATATGA 57.221 33.333 0.00 0.00 0.00 2.15
2364 3273 2.417243 GGGCATCTTGGGAAAAATGTCG 60.417 50.000 0.00 0.00 0.00 4.35
2515 3570 0.322456 TGAGTCCAATCCCAAAGGCG 60.322 55.000 0.00 0.00 0.00 5.52
2516 3571 1.753073 CATGAGTCCAATCCCAAAGGC 59.247 52.381 0.00 0.00 0.00 4.35
2517 3572 1.753073 GCATGAGTCCAATCCCAAAGG 59.247 52.381 0.00 0.00 0.00 3.11
2520 3575 1.918262 AGAGCATGAGTCCAATCCCAA 59.082 47.619 0.00 0.00 0.00 4.12
2521 3576 1.211212 CAGAGCATGAGTCCAATCCCA 59.789 52.381 0.00 0.00 0.00 4.37
2522 3577 1.964552 CAGAGCATGAGTCCAATCCC 58.035 55.000 0.00 0.00 0.00 3.85
2523 3578 1.307097 GCAGAGCATGAGTCCAATCC 58.693 55.000 0.00 0.00 0.00 3.01
2524 3579 1.307097 GGCAGAGCATGAGTCCAATC 58.693 55.000 0.00 0.00 0.00 2.67
2525 3580 0.622136 TGGCAGAGCATGAGTCCAAT 59.378 50.000 0.00 0.00 0.00 3.16
2526 3581 0.321919 GTGGCAGAGCATGAGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
2527 3582 1.196766 AGTGGCAGAGCATGAGTCCA 61.197 55.000 0.00 0.00 0.00 4.02
2528 3583 0.743701 CAGTGGCAGAGCATGAGTCC 60.744 60.000 0.00 0.00 0.00 3.85
2529 3584 0.248565 TCAGTGGCAGAGCATGAGTC 59.751 55.000 0.00 0.00 0.00 3.36
2530 3585 0.689055 TTCAGTGGCAGAGCATGAGT 59.311 50.000 0.00 0.00 0.00 3.41
2531 3586 1.671328 CATTCAGTGGCAGAGCATGAG 59.329 52.381 0.00 0.00 0.00 2.90
2532 3587 1.746470 CATTCAGTGGCAGAGCATGA 58.254 50.000 0.00 0.00 0.00 3.07
2533 3588 0.100682 GCATTCAGTGGCAGAGCATG 59.899 55.000 0.00 0.00 0.00 4.06
2534 3589 0.034380 AGCATTCAGTGGCAGAGCAT 60.034 50.000 0.00 0.00 0.00 3.79
2535 3590 0.958876 CAGCATTCAGTGGCAGAGCA 60.959 55.000 0.00 0.00 0.00 4.26
2536 3591 1.654954 CCAGCATTCAGTGGCAGAGC 61.655 60.000 0.00 0.00 0.00 4.09
2537 3592 0.035725 TCCAGCATTCAGTGGCAGAG 60.036 55.000 0.00 0.00 33.43 3.35
2538 3593 0.035725 CTCCAGCATTCAGTGGCAGA 60.036 55.000 0.00 0.00 33.43 4.26
2539 3594 0.322277 ACTCCAGCATTCAGTGGCAG 60.322 55.000 0.00 0.00 33.43 4.85
2540 3595 0.111061 AACTCCAGCATTCAGTGGCA 59.889 50.000 0.00 0.00 33.43 4.92
2750 3806 7.114811 CCACTGTCACTTTGCATAAAACAATAC 59.885 37.037 0.00 0.00 0.00 1.89
2798 3854 6.016610 GCATATTTATAGGAAACGCCAAGGAA 60.017 38.462 0.00 0.00 40.02 3.36
3032 5521 6.932400 AGCAGCTTTTCAAAATGATTGAATCA 59.068 30.769 10.65 10.65 44.55 2.57
3067 5557 4.317530 AAGTGGATAACTCCCTTTTCCC 57.682 45.455 0.00 0.00 41.29 3.97
3090 5580 7.118723 AGAACTTGCAATATCCAGGAATACAA 58.881 34.615 0.00 0.00 0.00 2.41
3132 5693 5.120208 CAGGGAACACTGTTTCTACAATACG 59.880 44.000 0.07 0.00 32.92 3.06
3576 9016 2.432444 CAGAAATAACAACCGGGCTGA 58.568 47.619 6.32 0.00 0.00 4.26
3619 9059 7.291411 AGAACCTATATAATGGGCTATAGCG 57.709 40.000 18.30 2.76 43.26 4.26
4059 9511 8.508875 TCAATTATCATAACATGCACATGCTAG 58.491 33.333 10.50 0.22 42.39 3.42
4170 9626 2.899900 ACACAAGGTCATGCTGTAGAGA 59.100 45.455 0.00 0.00 0.00 3.10
4254 9710 1.588404 CGGCGACACATTACTAAGCTG 59.412 52.381 0.00 0.00 0.00 4.24
4440 9901 2.289694 ACGCTGCTACTTGAAGGAATGT 60.290 45.455 0.00 0.00 0.00 2.71
4718 10309 6.634805 ACTCATGTCACTAACAGAAGTATGG 58.365 40.000 0.00 0.00 42.37 2.74
4960 10553 1.299541 ACAGCGTTCAGACAACCTTG 58.700 50.000 0.00 0.00 0.00 3.61
5039 10632 8.694540 CCAATGAACCACTCATCCAATATTTAA 58.305 33.333 0.00 0.00 44.43 1.52
5048 10641 1.838112 TGCCAATGAACCACTCATCC 58.162 50.000 0.00 0.00 44.43 3.51
5092 10686 1.003233 GGGCACAACTGACCTCCTC 60.003 63.158 0.00 0.00 43.43 3.71
5164 10759 6.264744 GCAGGTAGTAGTATATCAACACAGGA 59.735 42.308 0.00 0.00 0.00 3.86
5177 10772 6.479972 AACATATGCAAGCAGGTAGTAGTA 57.520 37.500 1.58 0.00 0.00 1.82
5201 10796 4.202121 ACAAGCGACCTCGAATGTGTATAT 60.202 41.667 0.00 0.00 43.02 0.86
5203 10798 2.094182 ACAAGCGACCTCGAATGTGTAT 60.094 45.455 0.00 0.00 43.02 2.29
5360 11013 0.304705 CACAAGGTGTCTGTCGCAAC 59.695 55.000 0.00 0.00 0.00 4.17
5362 11015 0.176910 TTCACAAGGTGTCTGTCGCA 59.823 50.000 0.00 0.00 34.79 5.10
5363 11016 1.512926 ATTCACAAGGTGTCTGTCGC 58.487 50.000 0.00 0.00 34.79 5.19
5366 11019 5.278463 GCACAATAATTCACAAGGTGTCTGT 60.278 40.000 0.00 0.00 34.79 3.41
5367 11020 5.156355 GCACAATAATTCACAAGGTGTCTG 58.844 41.667 0.00 0.00 34.79 3.51
5368 11021 4.826733 TGCACAATAATTCACAAGGTGTCT 59.173 37.500 0.00 0.00 34.79 3.41
5369 11022 4.917415 GTGCACAATAATTCACAAGGTGTC 59.083 41.667 13.17 0.00 34.79 3.67
5370 11023 4.556501 CGTGCACAATAATTCACAAGGTGT 60.557 41.667 18.64 0.00 34.79 4.16
5371 11024 3.913763 CGTGCACAATAATTCACAAGGTG 59.086 43.478 18.64 0.00 34.45 4.00
5372 11025 3.611530 GCGTGCACAATAATTCACAAGGT 60.612 43.478 18.64 0.00 0.00 3.50
5373 11026 2.916716 GCGTGCACAATAATTCACAAGG 59.083 45.455 18.64 0.00 0.00 3.61
5432 11094 1.129917 CCAGATCAGATCAGCCACCT 58.870 55.000 13.14 0.00 0.00 4.00
5495 11175 2.215942 ATCACTGGCCTTACCCAAAC 57.784 50.000 3.32 0.00 37.83 2.93
5576 11266 2.633488 CCCCTTTCGAATGAGTTCTCC 58.367 52.381 12.31 0.00 32.00 3.71
5585 11275 0.474184 ATGCGATCCCCCTTTCGAAT 59.526 50.000 0.00 0.00 37.55 3.34
5592 11282 1.216990 AGAAAAGATGCGATCCCCCT 58.783 50.000 0.00 0.00 0.00 4.79
5609 11299 2.048222 CGCAGACCGGAGCAAAGA 60.048 61.111 9.46 0.00 0.00 2.52
5629 11319 2.082733 CGCTTTCTTATTCAGCAGCG 57.917 50.000 0.00 0.00 42.33 5.18
5630 11320 2.416547 TGACGCTTTCTTATTCAGCAGC 59.583 45.455 0.00 0.00 32.71 5.25
5631 11321 3.181516 GGTGACGCTTTCTTATTCAGCAG 60.182 47.826 0.00 0.00 35.31 4.24
5665 11355 2.101783 TGCATGCGGAGGAAATGAAAT 58.898 42.857 14.09 0.00 0.00 2.17
5666 11356 1.543607 TGCATGCGGAGGAAATGAAA 58.456 45.000 14.09 0.00 0.00 2.69
5667 11357 1.766494 ATGCATGCGGAGGAAATGAA 58.234 45.000 14.09 0.00 0.00 2.57
5668 11358 1.766494 AATGCATGCGGAGGAAATGA 58.234 45.000 14.09 0.00 0.00 2.57
5669 11359 2.589798 AAATGCATGCGGAGGAAATG 57.410 45.000 14.09 0.00 0.00 2.32
5670 11360 4.147321 AGATAAATGCATGCGGAGGAAAT 58.853 39.130 14.09 0.00 0.00 2.17
5671 11361 3.554934 AGATAAATGCATGCGGAGGAAA 58.445 40.909 14.09 0.00 0.00 3.13
5672 11362 3.141398 GAGATAAATGCATGCGGAGGAA 58.859 45.455 14.09 0.00 0.00 3.36
5673 11363 2.550855 GGAGATAAATGCATGCGGAGGA 60.551 50.000 14.09 0.00 0.00 3.71
5674 11364 1.808945 GGAGATAAATGCATGCGGAGG 59.191 52.381 14.09 0.00 0.00 4.30
5675 11365 1.808945 GGGAGATAAATGCATGCGGAG 59.191 52.381 14.09 0.00 0.00 4.63
5676 11366 1.877680 CGGGAGATAAATGCATGCGGA 60.878 52.381 14.09 0.00 0.00 5.54
5677 11367 0.518636 CGGGAGATAAATGCATGCGG 59.481 55.000 14.09 0.00 0.00 5.69
5678 11368 0.110056 GCGGGAGATAAATGCATGCG 60.110 55.000 14.09 0.00 0.00 4.73
5679 11369 1.068748 CAGCGGGAGATAAATGCATGC 60.069 52.381 11.82 11.82 0.00 4.06
5680 11370 2.031420 CACAGCGGGAGATAAATGCATG 60.031 50.000 0.00 0.00 0.00 4.06
5681 11371 2.224606 CACAGCGGGAGATAAATGCAT 58.775 47.619 0.00 0.00 0.00 3.96
5687 11377 3.857052 CTTACAACACAGCGGGAGATAA 58.143 45.455 0.00 0.00 0.00 1.75
5720 11410 0.041663 TTTGGAAAGCTTCGCGAACG 60.042 50.000 19.38 14.99 42.01 3.95
5721 11411 1.674908 CTTTGGAAAGCTTCGCGAAC 58.325 50.000 19.38 14.79 0.00 3.95
5737 11427 3.438360 GAATTTTGATCGATGCCGCTTT 58.562 40.909 0.54 0.00 35.37 3.51
5751 11445 6.241207 TCAAGCTTCTAGAACCGAATTTTG 57.759 37.500 0.00 0.00 0.00 2.44
5752 11446 6.877611 TTCAAGCTTCTAGAACCGAATTTT 57.122 33.333 0.00 0.00 0.00 1.82
5755 11449 4.389077 CGTTTCAAGCTTCTAGAACCGAAT 59.611 41.667 8.63 0.00 30.21 3.34
5757 11451 3.243636 ACGTTTCAAGCTTCTAGAACCGA 60.244 43.478 17.70 0.00 32.59 4.69
5758 11452 3.057734 ACGTTTCAAGCTTCTAGAACCG 58.942 45.455 11.64 11.64 34.10 4.44
5760 11454 4.308265 AGGACGTTTCAAGCTTCTAGAAC 58.692 43.478 0.00 0.00 0.00 3.01
5762 11456 3.056749 GGAGGACGTTTCAAGCTTCTAGA 60.057 47.826 0.00 0.00 0.00 2.43
5764 11458 2.631062 TGGAGGACGTTTCAAGCTTCTA 59.369 45.455 0.00 0.00 0.00 2.10
5809 11503 1.722011 AAAAATCAGTCGATCCGCGT 58.278 45.000 4.92 0.00 41.80 6.01
5810 11504 3.918258 TTAAAAATCAGTCGATCCGCG 57.082 42.857 0.00 0.00 42.69 6.46
5811 11505 4.898488 CGAATTAAAAATCAGTCGATCCGC 59.102 41.667 0.00 0.00 0.00 5.54
5812 11506 6.032722 ACGAATTAAAAATCAGTCGATCCG 57.967 37.500 0.00 0.00 32.98 4.18
5813 11507 7.578024 CGTTACGAATTAAAAATCAGTCGATCC 59.422 37.037 0.00 0.00 32.98 3.36
5814 11508 8.316046 TCGTTACGAATTAAAAATCAGTCGATC 58.684 33.333 4.50 0.00 31.06 3.69
5815 11509 8.106348 GTCGTTACGAATTAAAAATCAGTCGAT 58.894 33.333 9.65 0.00 37.72 3.59
5816 11510 7.326789 AGTCGTTACGAATTAAAAATCAGTCGA 59.673 33.333 9.65 0.00 37.72 4.20
5817 11511 7.418801 CAGTCGTTACGAATTAAAAATCAGTCG 59.581 37.037 9.65 0.00 37.72 4.18
5819 11513 7.013529 GCAGTCGTTACGAATTAAAAATCAGT 58.986 34.615 9.65 0.00 37.72 3.41
5821 11515 6.889494 TGCAGTCGTTACGAATTAAAAATCA 58.111 32.000 9.65 0.00 37.72 2.57
5826 11520 6.045698 TGTTTGCAGTCGTTACGAATTAAA 57.954 33.333 9.65 9.40 37.72 1.52
5827 11521 5.654317 TGTTTGCAGTCGTTACGAATTAA 57.346 34.783 9.65 3.29 37.72 1.40
5829 11523 3.606153 GCTGTTTGCAGTCGTTACGAATT 60.606 43.478 9.65 0.00 44.32 2.17
5830 11524 2.096417 GCTGTTTGCAGTCGTTACGAAT 60.096 45.455 9.65 5.18 44.32 3.34
5831 11525 1.259507 GCTGTTTGCAGTCGTTACGAA 59.740 47.619 9.65 0.00 44.32 3.85
5832 11526 0.856641 GCTGTTTGCAGTCGTTACGA 59.143 50.000 2.33 2.33 44.32 3.43
5851 11547 0.466555 TTCTTCCGGGTGGTGGTTTG 60.467 55.000 0.00 0.00 36.30 2.93
5884 11583 0.678048 GAAAAGGATGGCCAGCTCGT 60.678 55.000 22.39 8.45 36.29 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.