Multiple sequence alignment - TraesCS3D01G251700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G251700 chr3D 100.000 6158 0 0 1 6158 352392487 352386330 0.000000e+00 11372.0
1 TraesCS3D01G251700 chr3A 94.553 4516 141 40 443 4896 470848314 470843842 0.000000e+00 6879.0
2 TraesCS3D01G251700 chr3A 93.846 780 31 7 4960 5728 470843839 470843066 0.000000e+00 1158.0
3 TraesCS3D01G251700 chr3A 86.914 405 21 10 5739 6138 470842988 470842611 5.710000e-115 425.0
4 TraesCS3D01G251700 chr3A 85.802 162 20 3 212 371 387848556 387848716 1.060000e-37 169.0
5 TraesCS3D01G251700 chr3A 88.034 117 10 4 5232 5344 620473586 620473470 1.080000e-27 135.0
6 TraesCS3D01G251700 chr3A 88.889 99 10 1 5233 5330 57262242 57262144 3.010000e-23 121.0
7 TraesCS3D01G251700 chr3B 93.663 2572 100 32 3064 5604 451426519 451423980 0.000000e+00 3788.0
8 TraesCS3D01G251700 chr3B 93.811 2036 67 15 374 2389 451429221 451427225 0.000000e+00 3007.0
9 TraesCS3D01G251700 chr3B 88.166 507 28 19 2485 2988 451427227 451426750 5.350000e-160 575.0
10 TraesCS3D01G251700 chr3B 91.304 184 15 1 5739 5922 451423828 451423646 3.690000e-62 250.0
11 TraesCS3D01G251700 chr3B 92.025 163 6 3 5888 6049 451422849 451422693 8.030000e-54 222.0
12 TraesCS3D01G251700 chr3B 88.957 163 13 2 212 369 157369796 157369958 4.870000e-46 196.0
13 TraesCS3D01G251700 chr3B 93.103 87 6 0 5240 5326 635348202 635348116 1.800000e-25 128.0
14 TraesCS3D01G251700 chr3B 100.000 29 0 0 3032 3060 451426567 451426539 3.000000e-03 54.7
15 TraesCS3D01G251700 chr2A 90.419 167 8 2 210 368 715471558 715471724 4.840000e-51 213.0
16 TraesCS3D01G251700 chr2A 79.787 188 12 7 211 374 708041591 708041776 5.040000e-21 113.0
17 TraesCS3D01G251700 chr5A 87.349 166 14 1 212 370 382961781 382961946 3.790000e-42 183.0
18 TraesCS3D01G251700 chr5A 85.185 162 18 5 212 368 581923733 581923893 1.780000e-35 161.0
19 TraesCS3D01G251700 chr5A 86.466 133 16 2 212 343 671819901 671819770 1.790000e-30 145.0
20 TraesCS3D01G251700 chr1A 83.770 191 13 7 210 385 509012167 509011980 1.370000e-36 165.0
21 TraesCS3D01G251700 chr1A 88.710 124 12 2 192 314 530756154 530756276 3.850000e-32 150.0
22 TraesCS3D01G251700 chr1A 91.398 93 7 1 5240 5332 95850279 95850370 6.480000e-25 126.0
23 TraesCS3D01G251700 chr5D 84.568 162 20 5 212 370 337521955 337522114 8.260000e-34 156.0
24 TraesCS3D01G251700 chr5D 90.426 94 9 0 5237 5330 520110183 520110276 2.330000e-24 124.0
25 TraesCS3D01G251700 chr6B 93.182 88 6 0 5236 5323 472612147 472612060 5.010000e-26 130.0
26 TraesCS3D01G251700 chr5B 92.308 91 5 2 5235 5323 62940318 62940408 1.800000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G251700 chr3D 352386330 352392487 6157 True 11372.000000 11372 100.0000 1 6158 1 chr3D.!!$R1 6157
1 TraesCS3D01G251700 chr3A 470842611 470848314 5703 True 2820.666667 6879 91.7710 443 6138 3 chr3A.!!$R3 5695
2 TraesCS3D01G251700 chr3B 451422693 451429221 6528 True 1316.116667 3788 93.1615 374 6049 6 chr3B.!!$R2 5675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 483 0.034059 ACGATGGGCGGATTCTCATC 59.966 55.000 0.00 0.0 46.49 2.92 F
483 484 0.319728 CGATGGGCGGATTCTCATCT 59.680 55.000 2.65 0.0 35.24 2.90 F
1605 1628 0.700564 AGAGATTTTGGAGGGCTGCA 59.299 50.000 0.50 0.0 0.00 4.41 F
2609 2644 0.102300 CACTCACACTCGGACACACA 59.898 55.000 0.00 0.0 0.00 3.72 F
2611 2646 0.102300 CTCACACTCGGACACACACA 59.898 55.000 0.00 0.0 0.00 3.72 F
2612 2647 0.533032 TCACACTCGGACACACACAA 59.467 50.000 0.00 0.0 0.00 3.33 F
4598 4823 1.007118 CCCCTTAATCCCTGCAAACCT 59.993 52.381 0.00 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 1482 2.749839 GCCAGGCGTGCCATGTAA 60.750 61.111 14.29 0.00 38.92 2.41 R
2100 2125 2.829023 TCCCCTGAAGTAGTACCAAGG 58.171 52.381 0.00 1.89 0.00 3.61 R
2666 2730 2.100605 AAGTTCCTCGATGAACCAGC 57.899 50.000 24.35 5.53 44.55 4.85 R
4598 4823 0.037590 ATTGCTTAACGGCCTGTCCA 59.962 50.000 0.00 0.00 34.01 4.02 R
4662 4887 6.013553 AGCATCAGCCAGAATAATCTACTCAT 60.014 38.462 0.00 0.00 43.56 2.90 R
4691 4916 2.361757 TGCCACATTTCAGACAAGGTTG 59.638 45.455 0.00 0.00 0.00 3.77 R
6054 7230 0.448990 TCGAATGCGCGTGTACTACT 59.551 50.000 8.43 0.00 37.46 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.793559 GGATAGCGTTGATAAGTGTGGT 58.206 45.455 0.00 0.00 0.00 4.16
22 23 4.189231 GGATAGCGTTGATAAGTGTGGTT 58.811 43.478 0.00 0.00 0.00 3.67
23 24 4.634443 GGATAGCGTTGATAAGTGTGGTTT 59.366 41.667 0.00 0.00 0.00 3.27
24 25 5.813672 GGATAGCGTTGATAAGTGTGGTTTA 59.186 40.000 0.00 0.00 0.00 2.01
25 26 6.018994 GGATAGCGTTGATAAGTGTGGTTTAG 60.019 42.308 0.00 0.00 0.00 1.85
26 27 4.000988 AGCGTTGATAAGTGTGGTTTAGG 58.999 43.478 0.00 0.00 0.00 2.69
27 28 3.126343 GCGTTGATAAGTGTGGTTTAGGG 59.874 47.826 0.00 0.00 0.00 3.53
28 29 3.687698 CGTTGATAAGTGTGGTTTAGGGG 59.312 47.826 0.00 0.00 0.00 4.79
29 30 4.659115 GTTGATAAGTGTGGTTTAGGGGT 58.341 43.478 0.00 0.00 0.00 4.95
30 31 5.569227 CGTTGATAAGTGTGGTTTAGGGGTA 60.569 44.000 0.00 0.00 0.00 3.69
31 32 6.420638 GTTGATAAGTGTGGTTTAGGGGTAT 58.579 40.000 0.00 0.00 0.00 2.73
32 33 6.645884 TGATAAGTGTGGTTTAGGGGTATT 57.354 37.500 0.00 0.00 0.00 1.89
33 34 7.034967 TGATAAGTGTGGTTTAGGGGTATTT 57.965 36.000 0.00 0.00 0.00 1.40
34 35 7.471890 TGATAAGTGTGGTTTAGGGGTATTTT 58.528 34.615 0.00 0.00 0.00 1.82
35 36 7.394923 TGATAAGTGTGGTTTAGGGGTATTTTG 59.605 37.037 0.00 0.00 0.00 2.44
36 37 4.412843 AGTGTGGTTTAGGGGTATTTTGG 58.587 43.478 0.00 0.00 0.00 3.28
37 38 4.140876 AGTGTGGTTTAGGGGTATTTTGGT 60.141 41.667 0.00 0.00 0.00 3.67
38 39 4.219070 GTGTGGTTTAGGGGTATTTTGGTC 59.781 45.833 0.00 0.00 0.00 4.02
39 40 4.140994 TGTGGTTTAGGGGTATTTTGGTCA 60.141 41.667 0.00 0.00 0.00 4.02
40 41 4.219070 GTGGTTTAGGGGTATTTTGGTCAC 59.781 45.833 0.00 0.00 0.00 3.67
41 42 4.106663 TGGTTTAGGGGTATTTTGGTCACT 59.893 41.667 0.00 0.00 0.00 3.41
42 43 5.081728 GGTTTAGGGGTATTTTGGTCACTT 58.918 41.667 0.00 0.00 0.00 3.16
43 44 5.184479 GGTTTAGGGGTATTTTGGTCACTTC 59.816 44.000 0.00 0.00 0.00 3.01
44 45 5.586155 TTAGGGGTATTTTGGTCACTTCA 57.414 39.130 0.00 0.00 0.00 3.02
45 46 4.463050 AGGGGTATTTTGGTCACTTCAA 57.537 40.909 0.00 0.00 0.00 2.69
46 47 4.149598 AGGGGTATTTTGGTCACTTCAAC 58.850 43.478 0.00 0.00 0.00 3.18
47 48 3.257375 GGGGTATTTTGGTCACTTCAACC 59.743 47.826 0.00 0.00 37.31 3.77
48 49 3.257375 GGGTATTTTGGTCACTTCAACCC 59.743 47.826 0.00 0.00 35.84 4.11
49 50 3.057806 GGTATTTTGGTCACTTCAACCCG 60.058 47.826 0.00 0.00 35.84 5.28
50 51 2.421751 TTTTGGTCACTTCAACCCGA 57.578 45.000 0.00 0.00 35.84 5.14
51 52 2.649531 TTTGGTCACTTCAACCCGAT 57.350 45.000 0.00 0.00 35.84 4.18
52 53 2.178912 TTGGTCACTTCAACCCGATC 57.821 50.000 0.00 0.00 35.84 3.69
53 54 1.052617 TGGTCACTTCAACCCGATCA 58.947 50.000 0.00 0.00 35.84 2.92
54 55 1.418264 TGGTCACTTCAACCCGATCAA 59.582 47.619 0.00 0.00 35.84 2.57
55 56 2.039746 TGGTCACTTCAACCCGATCAAT 59.960 45.455 0.00 0.00 35.84 2.57
56 57 2.420022 GGTCACTTCAACCCGATCAATG 59.580 50.000 0.00 0.00 0.00 2.82
57 58 2.420022 GTCACTTCAACCCGATCAATGG 59.580 50.000 0.00 0.00 0.00 3.16
58 59 1.133025 CACTTCAACCCGATCAATGGC 59.867 52.381 0.00 0.00 0.00 4.40
59 60 0.740737 CTTCAACCCGATCAATGGCC 59.259 55.000 0.00 0.00 0.00 5.36
60 61 0.331278 TTCAACCCGATCAATGGCCT 59.669 50.000 3.32 0.00 0.00 5.19
61 62 0.331278 TCAACCCGATCAATGGCCTT 59.669 50.000 3.32 0.00 0.00 4.35
62 63 1.185315 CAACCCGATCAATGGCCTTT 58.815 50.000 3.32 0.00 0.00 3.11
63 64 1.135024 CAACCCGATCAATGGCCTTTG 60.135 52.381 22.31 22.31 0.00 2.77
64 65 0.331278 ACCCGATCAATGGCCTTTGA 59.669 50.000 29.98 29.98 39.77 2.69
65 66 0.740737 CCCGATCAATGGCCTTTGAC 59.259 55.000 30.33 22.62 38.37 3.18
66 67 0.740737 CCGATCAATGGCCTTTGACC 59.259 55.000 30.33 22.82 38.37 4.02
67 68 1.462616 CGATCAATGGCCTTTGACCA 58.537 50.000 30.33 13.66 42.61 4.02
68 69 1.818060 CGATCAATGGCCTTTGACCAA 59.182 47.619 30.33 13.34 41.49 3.67
69 70 2.230992 CGATCAATGGCCTTTGACCAAA 59.769 45.455 30.33 13.00 41.49 3.28
70 71 3.119029 CGATCAATGGCCTTTGACCAAAT 60.119 43.478 30.33 17.65 41.49 2.32
71 72 3.681593 TCAATGGCCTTTGACCAAATG 57.318 42.857 25.82 3.46 41.49 2.32
72 73 3.237746 TCAATGGCCTTTGACCAAATGA 58.762 40.909 25.82 5.73 41.49 2.57
73 74 3.839490 TCAATGGCCTTTGACCAAATGAT 59.161 39.130 25.82 0.00 41.49 2.45
74 75 5.022122 TCAATGGCCTTTGACCAAATGATA 58.978 37.500 25.82 4.32 41.49 2.15
75 76 5.483231 TCAATGGCCTTTGACCAAATGATAA 59.517 36.000 25.82 3.85 41.49 1.75
76 77 4.799564 TGGCCTTTGACCAAATGATAAC 57.200 40.909 3.32 0.00 33.12 1.89
77 78 3.192422 TGGCCTTTGACCAAATGATAACG 59.808 43.478 3.32 0.00 33.12 3.18
78 79 3.428862 GGCCTTTGACCAAATGATAACGG 60.429 47.826 0.00 0.00 0.00 4.44
79 80 3.192633 GCCTTTGACCAAATGATAACGGT 59.807 43.478 2.66 0.00 0.00 4.83
80 81 4.732784 CCTTTGACCAAATGATAACGGTG 58.267 43.478 0.00 0.00 0.00 4.94
81 82 4.217550 CCTTTGACCAAATGATAACGGTGT 59.782 41.667 0.00 0.00 0.00 4.16
82 83 5.278758 CCTTTGACCAAATGATAACGGTGTT 60.279 40.000 0.00 0.00 0.00 3.32
83 84 4.757799 TGACCAAATGATAACGGTGTTG 57.242 40.909 0.00 0.00 0.00 3.33
84 85 3.057876 TGACCAAATGATAACGGTGTTGC 60.058 43.478 0.00 0.00 0.00 4.17
85 86 2.095466 ACCAAATGATAACGGTGTTGCG 60.095 45.455 0.00 0.00 0.00 4.85
86 87 2.095466 CCAAATGATAACGGTGTTGCGT 60.095 45.455 0.00 0.00 0.00 5.24
87 88 2.892373 AATGATAACGGTGTTGCGTG 57.108 45.000 0.00 0.00 0.00 5.34
88 89 1.083489 ATGATAACGGTGTTGCGTGG 58.917 50.000 0.00 0.00 0.00 4.94
89 90 0.249953 TGATAACGGTGTTGCGTGGT 60.250 50.000 0.00 0.00 0.00 4.16
90 91 0.165079 GATAACGGTGTTGCGTGGTG 59.835 55.000 0.00 0.00 0.00 4.17
91 92 0.533308 ATAACGGTGTTGCGTGGTGT 60.533 50.000 0.00 0.00 0.00 4.16
92 93 0.743701 TAACGGTGTTGCGTGGTGTT 60.744 50.000 0.00 0.00 0.00 3.32
93 94 1.587933 AACGGTGTTGCGTGGTGTTT 61.588 50.000 0.00 0.00 0.00 2.83
94 95 1.137825 CGGTGTTGCGTGGTGTTTT 59.862 52.632 0.00 0.00 0.00 2.43
95 96 0.456995 CGGTGTTGCGTGGTGTTTTT 60.457 50.000 0.00 0.00 0.00 1.94
120 121 9.809096 TTTTGCACACTTAATAGTCATTTTTGA 57.191 25.926 0.00 0.00 30.26 2.69
121 122 9.462174 TTTGCACACTTAATAGTCATTTTTGAG 57.538 29.630 0.00 0.00 30.26 3.02
122 123 8.389779 TGCACACTTAATAGTCATTTTTGAGA 57.610 30.769 0.00 0.00 30.26 3.27
123 124 8.845227 TGCACACTTAATAGTCATTTTTGAGAA 58.155 29.630 0.00 0.00 30.26 2.87
124 125 9.334693 GCACACTTAATAGTCATTTTTGAGAAG 57.665 33.333 0.00 0.00 30.26 2.85
141 142 8.419076 TTTGAGAAGTTGAAATTTTTAGTGGC 57.581 30.769 0.00 0.00 0.00 5.01
142 143 7.106439 TGAGAAGTTGAAATTTTTAGTGGCA 57.894 32.000 0.00 0.00 0.00 4.92
143 144 7.551585 TGAGAAGTTGAAATTTTTAGTGGCAA 58.448 30.769 0.00 0.00 0.00 4.52
144 145 8.203485 TGAGAAGTTGAAATTTTTAGTGGCAAT 58.797 29.630 0.00 0.00 0.00 3.56
145 146 8.962884 AGAAGTTGAAATTTTTAGTGGCAATT 57.037 26.923 0.00 0.00 0.00 2.32
155 156 7.804614 TTTTTAGTGGCAATTATTTAGTGCG 57.195 32.000 0.00 0.00 39.22 5.34
156 157 6.745159 TTTAGTGGCAATTATTTAGTGCGA 57.255 33.333 0.00 0.00 39.22 5.10
157 158 4.616181 AGTGGCAATTATTTAGTGCGAC 57.384 40.909 2.70 2.70 44.43 5.19
158 159 4.006989 AGTGGCAATTATTTAGTGCGACA 58.993 39.130 11.61 0.00 45.90 4.35
159 160 4.095610 GTGGCAATTATTTAGTGCGACAC 58.904 43.478 5.58 2.28 43.80 3.67
160 161 3.753797 TGGCAATTATTTAGTGCGACACA 59.246 39.130 11.58 0.00 39.22 3.72
161 162 4.216472 TGGCAATTATTTAGTGCGACACAA 59.784 37.500 11.58 0.43 39.22 3.33
162 163 5.105957 TGGCAATTATTTAGTGCGACACAAT 60.106 36.000 11.58 6.72 39.22 2.71
163 164 5.804979 GGCAATTATTTAGTGCGACACAATT 59.195 36.000 11.58 6.23 39.22 2.32
164 165 6.970043 GGCAATTATTTAGTGCGACACAATTA 59.030 34.615 11.58 0.54 39.22 1.40
165 166 7.165812 GGCAATTATTTAGTGCGACACAATTAG 59.834 37.037 11.58 5.79 39.22 1.73
166 167 7.696453 GCAATTATTTAGTGCGACACAATTAGT 59.304 33.333 11.58 0.00 36.74 2.24
182 183 8.545229 CACAATTAGTGCCAAAATGGATAAAA 57.455 30.769 0.00 0.00 42.15 1.52
183 184 8.997323 CACAATTAGTGCCAAAATGGATAAAAA 58.003 29.630 0.00 0.00 42.15 1.94
184 185 8.998377 ACAATTAGTGCCAAAATGGATAAAAAC 58.002 29.630 0.00 0.00 40.96 2.43
185 186 9.218440 CAATTAGTGCCAAAATGGATAAAAACT 57.782 29.630 0.00 0.00 40.96 2.66
186 187 9.435688 AATTAGTGCCAAAATGGATAAAAACTC 57.564 29.630 0.00 0.00 40.96 3.01
187 188 6.418057 AGTGCCAAAATGGATAAAAACTCA 57.582 33.333 0.00 0.00 40.96 3.41
188 189 7.008021 AGTGCCAAAATGGATAAAAACTCAT 57.992 32.000 0.00 0.00 40.96 2.90
189 190 7.452562 AGTGCCAAAATGGATAAAAACTCATT 58.547 30.769 0.00 0.00 40.96 2.57
190 191 8.592809 AGTGCCAAAATGGATAAAAACTCATTA 58.407 29.630 0.00 0.00 40.96 1.90
191 192 9.382275 GTGCCAAAATGGATAAAAACTCATTAT 57.618 29.630 0.00 0.00 40.96 1.28
192 193 9.956640 TGCCAAAATGGATAAAAACTCATTATT 57.043 25.926 0.00 0.00 40.96 1.40
199 200 8.232913 TGGATAAAAACTCATTATTACCCTGC 57.767 34.615 0.00 0.00 0.00 4.85
200 201 7.836685 TGGATAAAAACTCATTATTACCCTGCA 59.163 33.333 0.00 0.00 0.00 4.41
201 202 8.691797 GGATAAAAACTCATTATTACCCTGCAA 58.308 33.333 0.00 0.00 0.00 4.08
255 256 9.797642 ATCTAGATGTTCCATAATTATTGCACA 57.202 29.630 3.89 4.85 0.00 4.57
256 257 9.797642 TCTAGATGTTCCATAATTATTGCACAT 57.202 29.630 12.49 12.49 0.00 3.21
258 259 8.701908 AGATGTTCCATAATTATTGCACATCT 57.298 30.769 25.58 25.58 42.98 2.90
259 260 9.797642 AGATGTTCCATAATTATTGCACATCTA 57.202 29.630 27.86 2.76 44.89 1.98
262 263 9.407380 TGTTCCATAATTATTGCACATCTAAGT 57.593 29.630 0.00 0.00 0.00 2.24
263 264 9.884465 GTTCCATAATTATTGCACATCTAAGTC 57.116 33.333 0.00 0.00 0.00 3.01
264 265 8.621532 TCCATAATTATTGCACATCTAAGTCC 57.378 34.615 0.00 0.00 0.00 3.85
265 266 7.665559 TCCATAATTATTGCACATCTAAGTCCC 59.334 37.037 0.00 0.00 0.00 4.46
266 267 7.448161 CCATAATTATTGCACATCTAAGTCCCA 59.552 37.037 0.00 0.00 0.00 4.37
267 268 9.017509 CATAATTATTGCACATCTAAGTCCCAT 57.982 33.333 0.00 0.00 0.00 4.00
268 269 6.889301 ATTATTGCACATCTAAGTCCCATG 57.111 37.500 0.00 0.00 0.00 3.66
269 270 3.719268 TTGCACATCTAAGTCCCATGT 57.281 42.857 0.00 0.00 0.00 3.21
270 271 3.266510 TGCACATCTAAGTCCCATGTC 57.733 47.619 0.00 0.00 0.00 3.06
271 272 2.571202 TGCACATCTAAGTCCCATGTCA 59.429 45.455 0.00 0.00 0.00 3.58
272 273 3.200605 TGCACATCTAAGTCCCATGTCAT 59.799 43.478 0.00 0.00 0.00 3.06
273 274 4.202441 GCACATCTAAGTCCCATGTCATT 58.798 43.478 0.00 0.00 0.00 2.57
274 275 5.104569 TGCACATCTAAGTCCCATGTCATTA 60.105 40.000 0.00 0.00 0.00 1.90
275 276 5.822519 GCACATCTAAGTCCCATGTCATTAA 59.177 40.000 0.00 0.00 0.00 1.40
276 277 6.488006 GCACATCTAAGTCCCATGTCATTAAT 59.512 38.462 0.00 0.00 0.00 1.40
277 278 7.308229 GCACATCTAAGTCCCATGTCATTAATC 60.308 40.741 0.00 0.00 0.00 1.75
278 279 7.935755 CACATCTAAGTCCCATGTCATTAATCT 59.064 37.037 0.00 0.00 0.00 2.40
279 280 8.497745 ACATCTAAGTCCCATGTCATTAATCTT 58.502 33.333 0.00 0.00 0.00 2.40
282 283 8.988060 TCTAAGTCCCATGTCATTAATCTTACA 58.012 33.333 0.00 0.00 0.00 2.41
283 284 9.784531 CTAAGTCCCATGTCATTAATCTTACAT 57.215 33.333 0.00 3.01 32.91 2.29
285 286 8.455903 AGTCCCATGTCATTAATCTTACATTG 57.544 34.615 5.32 3.45 30.32 2.82
286 287 8.274322 AGTCCCATGTCATTAATCTTACATTGA 58.726 33.333 5.32 3.88 30.32 2.57
287 288 8.562892 GTCCCATGTCATTAATCTTACATTGAG 58.437 37.037 5.32 0.36 30.32 3.02
288 289 8.493607 TCCCATGTCATTAATCTTACATTGAGA 58.506 33.333 5.32 0.00 30.32 3.27
289 290 9.293404 CCCATGTCATTAATCTTACATTGAGAT 57.707 33.333 5.32 0.00 35.43 2.75
293 294 9.599866 TGTCATTAATCTTACATTGAGATTCGT 57.400 29.630 2.89 0.00 41.59 3.85
294 295 9.855361 GTCATTAATCTTACATTGAGATTCGTG 57.145 33.333 2.89 4.55 41.59 4.35
295 296 9.599866 TCATTAATCTTACATTGAGATTCGTGT 57.400 29.630 2.89 0.00 41.59 4.49
296 297 9.642312 CATTAATCTTACATTGAGATTCGTGTG 57.358 33.333 2.89 0.00 41.59 3.82
297 298 6.668541 AATCTTACATTGAGATTCGTGTGG 57.331 37.500 0.00 0.00 39.06 4.17
298 299 5.400066 TCTTACATTGAGATTCGTGTGGA 57.600 39.130 0.00 0.00 0.00 4.02
299 300 5.977635 TCTTACATTGAGATTCGTGTGGAT 58.022 37.500 0.00 0.00 0.00 3.41
300 301 7.107639 TCTTACATTGAGATTCGTGTGGATA 57.892 36.000 0.00 0.00 0.00 2.59
301 302 7.726216 TCTTACATTGAGATTCGTGTGGATAT 58.274 34.615 0.00 0.00 0.00 1.63
302 303 8.204160 TCTTACATTGAGATTCGTGTGGATATT 58.796 33.333 0.00 0.00 0.00 1.28
303 304 8.731275 TTACATTGAGATTCGTGTGGATATTT 57.269 30.769 0.00 0.00 0.00 1.40
304 305 7.630242 ACATTGAGATTCGTGTGGATATTTT 57.370 32.000 0.00 0.00 0.00 1.82
305 306 8.055279 ACATTGAGATTCGTGTGGATATTTTT 57.945 30.769 0.00 0.00 0.00 1.94
331 332 9.896645 TTTCTCTTTATGCTTGATTCTAGATGT 57.103 29.630 0.00 0.00 0.00 3.06
332 333 8.883954 TCTCTTTATGCTTGATTCTAGATGTG 57.116 34.615 0.00 0.00 0.00 3.21
333 334 7.440556 TCTCTTTATGCTTGATTCTAGATGTGC 59.559 37.037 0.00 0.00 0.00 4.57
334 335 7.049754 TCTTTATGCTTGATTCTAGATGTGCA 58.950 34.615 0.00 1.23 0.00 4.57
335 336 7.553760 TCTTTATGCTTGATTCTAGATGTGCAA 59.446 33.333 0.00 0.00 32.88 4.08
336 337 7.812690 TTATGCTTGATTCTAGATGTGCAAT 57.187 32.000 0.00 0.00 32.88 3.56
337 338 8.907222 TTATGCTTGATTCTAGATGTGCAATA 57.093 30.769 0.00 0.00 32.88 1.90
338 339 7.812690 ATGCTTGATTCTAGATGTGCAATAA 57.187 32.000 0.00 0.00 32.88 1.40
339 340 7.812690 TGCTTGATTCTAGATGTGCAATAAT 57.187 32.000 0.00 0.00 0.00 1.28
340 341 8.229253 TGCTTGATTCTAGATGTGCAATAATT 57.771 30.769 0.00 0.00 0.00 1.40
341 342 9.341078 TGCTTGATTCTAGATGTGCAATAATTA 57.659 29.630 0.00 0.00 0.00 1.40
342 343 9.823098 GCTTGATTCTAGATGTGCAATAATTAG 57.177 33.333 0.00 0.00 0.00 1.73
345 346 9.212641 TGATTCTAGATGTGCAATAATTAGAGC 57.787 33.333 0.00 5.27 0.00 4.09
346 347 9.212641 GATTCTAGATGTGCAATAATTAGAGCA 57.787 33.333 9.76 9.76 34.10 4.26
347 348 9.736414 ATTCTAGATGTGCAATAATTAGAGCAT 57.264 29.630 15.14 3.63 39.43 3.79
365 366 9.588096 TTAGAGCATATTTAGATGTGTCCTAGA 57.412 33.333 0.00 0.00 0.00 2.43
366 367 7.891561 AGAGCATATTTAGATGTGTCCTAGAC 58.108 38.462 0.00 0.00 0.00 2.59
367 368 7.507277 AGAGCATATTTAGATGTGTCCTAGACA 59.493 37.037 0.00 0.00 40.50 3.41
378 379 4.974645 TGTCCTAGACACATCCAAAGTT 57.025 40.909 0.00 0.00 37.67 2.66
411 412 5.422331 AGATGATTCCTTTGTACTCCTTCGA 59.578 40.000 0.00 0.00 0.00 3.71
415 416 4.188247 TCCTTTGTACTCCTTCGATGTG 57.812 45.455 0.00 0.00 0.00 3.21
418 419 4.806247 CCTTTGTACTCCTTCGATGTGATC 59.194 45.833 0.00 0.00 0.00 2.92
433 434 6.072563 TCGATGTGATCTCTTTTTGCATTGAA 60.073 34.615 0.00 0.00 0.00 2.69
449 450 3.347958 TTGAAGTTGCACAAATCGGAC 57.652 42.857 0.00 0.00 0.00 4.79
481 482 0.469917 AACGATGGGCGGATTCTCAT 59.530 50.000 0.00 0.00 46.49 2.90
482 483 0.034059 ACGATGGGCGGATTCTCATC 59.966 55.000 0.00 0.00 46.49 2.92
483 484 0.319728 CGATGGGCGGATTCTCATCT 59.680 55.000 2.65 0.00 35.24 2.90
484 485 1.671261 CGATGGGCGGATTCTCATCTC 60.671 57.143 2.65 0.00 35.24 2.75
489 490 2.615912 GGGCGGATTCTCATCTCAAAAG 59.384 50.000 0.00 0.00 0.00 2.27
610 611 2.427410 CGCGAACCAAAGCAGCAC 60.427 61.111 0.00 0.00 0.00 4.40
1204 1214 5.075493 GCCCACATGGATGATAGAGATTTT 58.925 41.667 0.00 0.00 37.39 1.82
1364 1375 2.163010 GCCTGTGATTGAATGTGACTGG 59.837 50.000 0.00 0.00 0.00 4.00
1389 1400 2.571757 TCGACACGAGTCCCATGC 59.428 61.111 7.43 0.00 41.87 4.06
1403 1414 3.196254 GTCCCATGCCAATGAAACTGATT 59.804 43.478 0.00 0.00 35.67 2.57
1471 1482 3.746492 GCTCTGTGTTAGTGAAACCGATT 59.254 43.478 0.00 0.00 37.80 3.34
1521 1532 1.474677 GCAGATGTGAGGCTGTGCTAT 60.475 52.381 0.00 0.00 34.66 2.97
1605 1628 0.700564 AGAGATTTTGGAGGGCTGCA 59.299 50.000 0.50 0.00 0.00 4.41
1727 1750 6.998968 AAAGAAGGCTATTCTTGATGTGAG 57.001 37.500 15.22 0.00 38.62 3.51
1771 1796 6.239543 CCATAGGATTGATAGTGTCTGCTTCT 60.240 42.308 0.00 0.00 0.00 2.85
1772 1797 5.021033 AGGATTGATAGTGTCTGCTTCTG 57.979 43.478 0.00 0.00 0.00 3.02
2100 2125 9.722056 GCATATAATATGTTTAGCTAACCATGC 57.278 33.333 22.68 14.84 35.81 4.06
2368 2402 3.708563 TTAGCAGGCTTTGTTGTTGTC 57.291 42.857 0.00 0.00 0.00 3.18
2421 2455 5.175090 TCATACTCAATCGTAGAGCACAG 57.825 43.478 0.00 0.00 43.63 3.66
2432 2466 5.294799 ATCGTAGAGCACAGTCTTAGTACTG 59.705 44.000 5.39 2.56 46.77 2.74
2503 2537 8.660373 ACAAAATTGTTTGCAAAAACGATCTTA 58.340 25.926 14.67 0.00 46.84 2.10
2599 2634 4.587262 TGGACATACTTGTACACTCACACT 59.413 41.667 0.00 0.00 41.92 3.55
2600 2635 5.162075 GGACATACTTGTACACTCACACTC 58.838 45.833 0.00 0.00 36.62 3.51
2601 2636 4.795268 ACATACTTGTACACTCACACTCG 58.205 43.478 0.00 0.00 33.16 4.18
2602 2637 2.795175 ACTTGTACACTCACACTCGG 57.205 50.000 0.00 0.00 0.00 4.63
2603 2638 2.304092 ACTTGTACACTCACACTCGGA 58.696 47.619 0.00 0.00 0.00 4.55
2604 2639 2.034305 ACTTGTACACTCACACTCGGAC 59.966 50.000 0.00 0.00 0.00 4.79
2605 2640 1.682740 TGTACACTCACACTCGGACA 58.317 50.000 0.00 0.00 0.00 4.02
2606 2641 1.335810 TGTACACTCACACTCGGACAC 59.664 52.381 0.00 0.00 0.00 3.67
2607 2642 1.335810 GTACACTCACACTCGGACACA 59.664 52.381 0.00 0.00 0.00 3.72
2608 2643 0.102481 ACACTCACACTCGGACACAC 59.898 55.000 0.00 0.00 0.00 3.82
2609 2644 0.102300 CACTCACACTCGGACACACA 59.898 55.000 0.00 0.00 0.00 3.72
2610 2645 0.102481 ACTCACACTCGGACACACAC 59.898 55.000 0.00 0.00 0.00 3.82
2611 2646 0.102300 CTCACACTCGGACACACACA 59.898 55.000 0.00 0.00 0.00 3.72
2612 2647 0.533032 TCACACTCGGACACACACAA 59.467 50.000 0.00 0.00 0.00 3.33
2613 2648 1.138069 TCACACTCGGACACACACAAT 59.862 47.619 0.00 0.00 0.00 2.71
2614 2649 1.939934 CACACTCGGACACACACAATT 59.060 47.619 0.00 0.00 0.00 2.32
2615 2650 2.032894 CACACTCGGACACACACAATTC 60.033 50.000 0.00 0.00 0.00 2.17
2616 2651 1.531149 CACTCGGACACACACAATTCC 59.469 52.381 0.00 0.00 0.00 3.01
2617 2652 1.140052 ACTCGGACACACACAATTCCA 59.860 47.619 0.00 0.00 0.00 3.53
2618 2653 2.224523 ACTCGGACACACACAATTCCAT 60.225 45.455 0.00 0.00 0.00 3.41
2619 2654 2.813754 CTCGGACACACACAATTCCATT 59.186 45.455 0.00 0.00 0.00 3.16
2620 2655 2.811431 TCGGACACACACAATTCCATTC 59.189 45.455 0.00 0.00 0.00 2.67
2621 2656 2.551887 CGGACACACACAATTCCATTCA 59.448 45.455 0.00 0.00 0.00 2.57
2622 2657 3.004210 CGGACACACACAATTCCATTCAA 59.996 43.478 0.00 0.00 0.00 2.69
2623 2658 4.298332 GGACACACACAATTCCATTCAAC 58.702 43.478 0.00 0.00 0.00 3.18
2624 2659 4.037923 GGACACACACAATTCCATTCAACT 59.962 41.667 0.00 0.00 0.00 3.16
2625 2660 5.186996 ACACACACAATTCCATTCAACTC 57.813 39.130 0.00 0.00 0.00 3.01
2626 2661 4.889409 ACACACACAATTCCATTCAACTCT 59.111 37.500 0.00 0.00 0.00 3.24
2627 2662 5.360714 ACACACACAATTCCATTCAACTCTT 59.639 36.000 0.00 0.00 0.00 2.85
2666 2730 9.130661 CAGATATACACCCCTGAATATAGAGAG 57.869 40.741 0.00 0.00 0.00 3.20
2875 2942 5.825532 TCATTATGTTGGAATGAGGAACCA 58.174 37.500 0.00 0.00 38.17 3.67
3019 3086 2.623416 GGCTGTATTTTGGCATACTCCC 59.377 50.000 0.00 0.00 31.73 4.30
3553 3777 2.549329 GCAATGGTTTGAAAAGGCCAAG 59.451 45.455 5.01 0.00 36.54 3.61
3620 3844 1.079543 CTCAGAAGGTGGAGTGCGG 60.080 63.158 0.00 0.00 0.00 5.69
3708 3932 3.181461 ACCATCTATACTTGCTGTGAGCC 60.181 47.826 0.00 0.00 41.51 4.70
3795 4019 3.607741 ACTGTTGATGCCTCAATCTGAG 58.392 45.455 7.71 5.00 43.08 3.35
3832 4056 3.808174 GTCCAACGCTAATGGGAATACTC 59.192 47.826 0.00 0.00 38.54 2.59
4016 4240 6.318648 GCAGGTACTTCATTTGTTCCATATGA 59.681 38.462 3.65 0.00 34.60 2.15
4265 4489 4.751098 TGACGGTTACGCATTAAGTTTTCT 59.249 37.500 0.00 0.00 46.04 2.52
4320 4544 6.734137 CACTTCAAAAGGTGCACATTTAGTA 58.266 36.000 27.71 14.33 0.00 1.82
4331 4555 4.095610 GCACATTTAGTATTGAACACGCC 58.904 43.478 0.00 0.00 0.00 5.68
4453 4677 1.813513 CCTGAGTCGCACTTCCATTT 58.186 50.000 0.00 0.00 0.00 2.32
4490 4715 7.526142 AGAAGAAAGAAAATTAAGTGTCCCC 57.474 36.000 0.00 0.00 0.00 4.81
4598 4823 1.007118 CCCCTTAATCCCTGCAAACCT 59.993 52.381 0.00 0.00 0.00 3.50
4662 4887 1.954146 GCCAGCGAACAGTTGTCGA 60.954 57.895 0.00 0.00 0.00 4.20
4691 4916 7.806695 TAGATTATTCTGGCTGATGCTCGGC 62.807 48.000 8.07 8.07 39.45 5.54
4703 4928 1.301716 GCTCGGCAACCTTGTCTGA 60.302 57.895 0.00 0.00 0.00 3.27
4800 5056 5.822519 TCCCATTGACATATAGCACAAAGAC 59.177 40.000 0.00 0.00 0.00 3.01
4807 5063 2.770164 ATAGCACAAAGACGCTTCCT 57.230 45.000 0.00 0.00 39.70 3.36
4880 5136 9.707957 TTTAATTGGTGTATCCTTGGACATAAT 57.292 29.630 0.00 0.00 37.07 1.28
4881 5137 9.707957 TTAATTGGTGTATCCTTGGACATAATT 57.292 29.630 0.00 2.88 37.07 1.40
4911 5167 5.594724 TTAAATCACATGCTTTGCTTTGC 57.405 34.783 0.00 0.00 0.00 3.68
4962 5218 4.904253 TGTTTTAAGCTAAAAGCCGTGT 57.096 36.364 0.00 0.00 43.77 4.49
5020 5276 8.970691 AAATTTGCAGTTCACATGAGTATAAC 57.029 30.769 0.00 0.00 0.00 1.89
5267 5523 7.332182 CCCTCCGTAAAGAAATATAAGAGCATC 59.668 40.741 0.00 0.00 0.00 3.91
5501 5760 0.787183 GACTCGCAGTGCTTGTCTTC 59.213 55.000 22.03 5.54 0.00 2.87
5520 5779 1.955778 TCAGTTCCATGTGTTGCCAAG 59.044 47.619 0.00 0.00 0.00 3.61
5528 5787 3.243805 CCATGTGTTGCCAAGAAATGACA 60.244 43.478 6.32 0.00 0.00 3.58
5553 5819 8.616076 CAGTCCCTTTCTCATTTATATGTGTTC 58.384 37.037 0.00 0.00 33.34 3.18
5604 5870 4.373156 AAGCCCATCTTTTGAGTACTGT 57.627 40.909 0.00 0.00 0.00 3.55
5624 5894 2.270275 TTTTTGTGCACCTTCGTGTG 57.730 45.000 15.69 0.00 42.39 3.82
5635 5905 1.871080 CTTCGTGTGTTGAGAAGGCT 58.129 50.000 0.00 0.00 38.09 4.58
5641 5911 1.610038 TGTGTTGAGAAGGCTTGCATG 59.390 47.619 3.46 0.00 0.00 4.06
5688 5958 3.231965 CGTTCGTACTGGTGTCTTGTAG 58.768 50.000 0.00 0.00 0.00 2.74
5689 5959 3.304257 CGTTCGTACTGGTGTCTTGTAGT 60.304 47.826 0.00 0.00 0.00 2.73
5690 5960 4.083855 CGTTCGTACTGGTGTCTTGTAGTA 60.084 45.833 0.00 0.00 0.00 1.82
5700 5970 9.398538 ACTGGTGTCTTGTAGTAAAATTTACAA 57.601 29.630 17.00 5.67 37.42 2.41
5701 5971 9.659830 CTGGTGTCTTGTAGTAAAATTTACAAC 57.340 33.333 17.00 0.98 35.48 3.32
5758 6096 4.724293 TGTAATGTGGGGTATCTCCATTCA 59.276 41.667 0.00 0.00 36.58 2.57
5770 6108 1.451387 CCATTCACCACTACCCCGC 60.451 63.158 0.00 0.00 0.00 6.13
5777 6115 1.451387 CCACTACCCCGCCATCAAC 60.451 63.158 0.00 0.00 0.00 3.18
5830 6168 5.771469 TGTTCTTGTATGTTTGCATGGAAG 58.229 37.500 0.00 0.00 36.58 3.46
5876 6216 2.284190 GCTATCAACTGGACTGCTTCC 58.716 52.381 0.00 0.00 46.13 3.46
5886 6226 1.827399 GACTGCTTCCGGGAAGACCA 61.827 60.000 35.08 23.81 41.71 4.02
5918 7088 4.698201 TTGTGGTCTGTGAGGAATTACA 57.302 40.909 0.00 0.00 0.00 2.41
5955 7131 5.221422 CCAGATTACCTGAAAAACTGGCAAA 60.221 40.000 0.00 0.00 45.78 3.68
6019 7195 7.412853 CGAAAGCTAACTTGAGATGCATTATT 58.587 34.615 0.00 0.00 35.85 1.40
6020 7196 8.551205 CGAAAGCTAACTTGAGATGCATTATTA 58.449 33.333 0.00 0.00 35.85 0.98
6036 7212 6.082338 GCATTATTATGAATCTGTGCCTTCG 58.918 40.000 0.00 0.00 33.37 3.79
6037 7213 6.073058 GCATTATTATGAATCTGTGCCTTCGA 60.073 38.462 0.00 0.00 33.37 3.71
6093 7269 3.664486 CGATAATCTAGGACGAAACTGCG 59.336 47.826 0.00 0.00 37.29 5.18
6113 7289 2.125326 CGGCCGTCTGACTGGGATA 61.125 63.158 19.50 0.00 0.00 2.59
6138 7314 2.803956 TCGCCACGGTAAAGAAAAGAAG 59.196 45.455 0.00 0.00 0.00 2.85
6139 7315 2.546789 CGCCACGGTAAAGAAAAGAAGT 59.453 45.455 0.00 0.00 0.00 3.01
6140 7316 3.606153 CGCCACGGTAAAGAAAAGAAGTG 60.606 47.826 0.00 0.00 0.00 3.16
6141 7317 3.314357 GCCACGGTAAAGAAAAGAAGTGT 59.686 43.478 0.00 0.00 0.00 3.55
6142 7318 4.512571 GCCACGGTAAAGAAAAGAAGTGTA 59.487 41.667 0.00 0.00 0.00 2.90
6143 7319 5.333875 GCCACGGTAAAGAAAAGAAGTGTAG 60.334 44.000 0.00 0.00 0.00 2.74
6144 7320 5.333875 CCACGGTAAAGAAAAGAAGTGTAGC 60.334 44.000 0.00 0.00 0.00 3.58
6145 7321 4.446719 ACGGTAAAGAAAAGAAGTGTAGCG 59.553 41.667 0.00 0.00 37.11 4.26
6146 7322 4.682860 CGGTAAAGAAAAGAAGTGTAGCGA 59.317 41.667 0.00 0.00 34.02 4.93
6147 7323 5.176223 CGGTAAAGAAAAGAAGTGTAGCGAA 59.824 40.000 0.00 0.00 34.02 4.70
6148 7324 6.292488 CGGTAAAGAAAAGAAGTGTAGCGAAA 60.292 38.462 0.00 0.00 34.02 3.46
6149 7325 7.412063 GGTAAAGAAAAGAAGTGTAGCGAAAA 58.588 34.615 0.00 0.00 0.00 2.29
6150 7326 7.586664 GGTAAAGAAAAGAAGTGTAGCGAAAAG 59.413 37.037 0.00 0.00 0.00 2.27
6151 7327 6.920569 AAGAAAAGAAGTGTAGCGAAAAGA 57.079 33.333 0.00 0.00 0.00 2.52
6152 7328 6.920569 AGAAAAGAAGTGTAGCGAAAAGAA 57.079 33.333 0.00 0.00 0.00 2.52
6153 7329 7.316544 AGAAAAGAAGTGTAGCGAAAAGAAA 57.683 32.000 0.00 0.00 0.00 2.52
6154 7330 7.758495 AGAAAAGAAGTGTAGCGAAAAGAAAA 58.242 30.769 0.00 0.00 0.00 2.29
6155 7331 8.241367 AGAAAAGAAGTGTAGCGAAAAGAAAAA 58.759 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.793559 ACCACACTTATCAACGCTATCC 58.206 45.455 0.00 0.00 0.00 2.59
1 2 5.796350 AAACCACACTTATCAACGCTATC 57.204 39.130 0.00 0.00 0.00 2.08
3 4 5.172934 CCTAAACCACACTTATCAACGCTA 58.827 41.667 0.00 0.00 0.00 4.26
4 5 4.000988 CCTAAACCACACTTATCAACGCT 58.999 43.478 0.00 0.00 0.00 5.07
5 6 3.126343 CCCTAAACCACACTTATCAACGC 59.874 47.826 0.00 0.00 0.00 4.84
6 7 3.687698 CCCCTAAACCACACTTATCAACG 59.312 47.826 0.00 0.00 0.00 4.10
7 8 4.659115 ACCCCTAAACCACACTTATCAAC 58.341 43.478 0.00 0.00 0.00 3.18
8 9 6.645884 ATACCCCTAAACCACACTTATCAA 57.354 37.500 0.00 0.00 0.00 2.57
9 10 6.645884 AATACCCCTAAACCACACTTATCA 57.354 37.500 0.00 0.00 0.00 2.15
10 11 7.147966 CCAAAATACCCCTAAACCACACTTATC 60.148 40.741 0.00 0.00 0.00 1.75
11 12 6.666113 CCAAAATACCCCTAAACCACACTTAT 59.334 38.462 0.00 0.00 0.00 1.73
12 13 6.011481 CCAAAATACCCCTAAACCACACTTA 58.989 40.000 0.00 0.00 0.00 2.24
13 14 4.836175 CCAAAATACCCCTAAACCACACTT 59.164 41.667 0.00 0.00 0.00 3.16
14 15 4.140876 ACCAAAATACCCCTAAACCACACT 60.141 41.667 0.00 0.00 0.00 3.55
15 16 4.154176 ACCAAAATACCCCTAAACCACAC 58.846 43.478 0.00 0.00 0.00 3.82
16 17 4.140994 TGACCAAAATACCCCTAAACCACA 60.141 41.667 0.00 0.00 0.00 4.17
17 18 4.219070 GTGACCAAAATACCCCTAAACCAC 59.781 45.833 0.00 0.00 0.00 4.16
18 19 4.106663 AGTGACCAAAATACCCCTAAACCA 59.893 41.667 0.00 0.00 0.00 3.67
19 20 4.669700 AGTGACCAAAATACCCCTAAACC 58.330 43.478 0.00 0.00 0.00 3.27
20 21 5.771165 TGAAGTGACCAAAATACCCCTAAAC 59.229 40.000 0.00 0.00 0.00 2.01
21 22 5.954757 TGAAGTGACCAAAATACCCCTAAA 58.045 37.500 0.00 0.00 0.00 1.85
22 23 5.586155 TGAAGTGACCAAAATACCCCTAA 57.414 39.130 0.00 0.00 0.00 2.69
23 24 5.318630 GTTGAAGTGACCAAAATACCCCTA 58.681 41.667 0.00 0.00 0.00 3.53
24 25 4.149598 GTTGAAGTGACCAAAATACCCCT 58.850 43.478 0.00 0.00 0.00 4.79
25 26 3.257375 GGTTGAAGTGACCAAAATACCCC 59.743 47.826 0.00 0.00 37.14 4.95
26 27 3.257375 GGGTTGAAGTGACCAAAATACCC 59.743 47.826 0.00 0.00 38.98 3.69
27 28 3.057806 CGGGTTGAAGTGACCAAAATACC 60.058 47.826 0.00 0.00 38.98 2.73
28 29 3.816523 TCGGGTTGAAGTGACCAAAATAC 59.183 43.478 0.00 0.00 38.98 1.89
29 30 4.088056 TCGGGTTGAAGTGACCAAAATA 57.912 40.909 0.00 0.00 38.98 1.40
30 31 2.938838 TCGGGTTGAAGTGACCAAAAT 58.061 42.857 0.00 0.00 38.98 1.82
31 32 2.421751 TCGGGTTGAAGTGACCAAAA 57.578 45.000 0.00 0.00 38.98 2.44
32 33 2.158740 TGATCGGGTTGAAGTGACCAAA 60.159 45.455 0.00 0.00 38.98 3.28
33 34 1.418264 TGATCGGGTTGAAGTGACCAA 59.582 47.619 0.00 0.00 38.98 3.67
34 35 1.052617 TGATCGGGTTGAAGTGACCA 58.947 50.000 0.00 0.00 38.98 4.02
35 36 2.178912 TTGATCGGGTTGAAGTGACC 57.821 50.000 0.00 0.00 36.41 4.02
36 37 2.420022 CCATTGATCGGGTTGAAGTGAC 59.580 50.000 0.00 0.00 0.00 3.67
37 38 2.710377 CCATTGATCGGGTTGAAGTGA 58.290 47.619 0.00 0.00 0.00 3.41
38 39 1.133025 GCCATTGATCGGGTTGAAGTG 59.867 52.381 0.60 0.00 0.00 3.16
39 40 1.463674 GCCATTGATCGGGTTGAAGT 58.536 50.000 0.60 0.00 0.00 3.01
40 41 0.740737 GGCCATTGATCGGGTTGAAG 59.259 55.000 0.00 0.00 0.00 3.02
41 42 0.331278 AGGCCATTGATCGGGTTGAA 59.669 50.000 5.01 0.00 0.00 2.69
42 43 0.331278 AAGGCCATTGATCGGGTTGA 59.669 50.000 5.01 0.00 0.00 3.18
43 44 1.135024 CAAAGGCCATTGATCGGGTTG 60.135 52.381 15.69 0.00 31.84 3.77
44 45 1.185315 CAAAGGCCATTGATCGGGTT 58.815 50.000 15.69 0.00 31.84 4.11
45 46 0.331278 TCAAAGGCCATTGATCGGGT 59.669 50.000 19.16 0.00 34.50 5.28
46 47 0.740737 GTCAAAGGCCATTGATCGGG 59.259 55.000 25.00 0.00 41.09 5.14
47 48 0.740737 GGTCAAAGGCCATTGATCGG 59.259 55.000 25.00 0.00 41.09 4.18
48 49 1.462616 TGGTCAAAGGCCATTGATCG 58.537 50.000 25.00 0.00 42.20 3.69
49 50 3.959535 TTTGGTCAAAGGCCATTGATC 57.040 42.857 25.00 24.48 41.09 2.92
50 51 3.839490 TCATTTGGTCAAAGGCCATTGAT 59.161 39.130 25.00 7.28 41.09 2.57
51 52 3.237746 TCATTTGGTCAAAGGCCATTGA 58.762 40.909 19.16 19.16 36.99 2.57
52 53 3.681593 TCATTTGGTCAAAGGCCATTG 57.318 42.857 14.62 14.62 35.71 2.82
53 54 5.624281 CGTTATCATTTGGTCAAAGGCCATT 60.624 40.000 5.01 0.00 35.71 3.16
54 55 4.142182 CGTTATCATTTGGTCAAAGGCCAT 60.142 41.667 5.01 0.00 35.71 4.40
55 56 3.192422 CGTTATCATTTGGTCAAAGGCCA 59.808 43.478 5.01 0.00 32.69 5.36
56 57 3.428862 CCGTTATCATTTGGTCAAAGGCC 60.429 47.826 0.00 0.00 32.69 5.19
57 58 3.192633 ACCGTTATCATTTGGTCAAAGGC 59.807 43.478 3.55 0.00 32.69 4.35
58 59 4.217550 ACACCGTTATCATTTGGTCAAAGG 59.782 41.667 2.14 2.14 33.32 3.11
59 60 5.371115 ACACCGTTATCATTTGGTCAAAG 57.629 39.130 2.55 0.00 33.32 2.77
60 61 5.524284 CAACACCGTTATCATTTGGTCAAA 58.476 37.500 0.00 0.00 30.72 2.69
61 62 4.557695 GCAACACCGTTATCATTTGGTCAA 60.558 41.667 0.00 0.00 30.72 3.18
62 63 3.057876 GCAACACCGTTATCATTTGGTCA 60.058 43.478 0.00 0.00 30.72 4.02
63 64 3.498082 GCAACACCGTTATCATTTGGTC 58.502 45.455 0.00 0.00 30.72 4.02
64 65 2.095466 CGCAACACCGTTATCATTTGGT 60.095 45.455 0.00 0.00 34.29 3.67
65 66 2.095466 ACGCAACACCGTTATCATTTGG 60.095 45.455 0.00 0.00 38.47 3.28
66 67 2.908009 CACGCAACACCGTTATCATTTG 59.092 45.455 0.00 0.00 39.83 2.32
67 68 2.095466 CCACGCAACACCGTTATCATTT 60.095 45.455 0.00 0.00 39.83 2.32
68 69 1.466950 CCACGCAACACCGTTATCATT 59.533 47.619 0.00 0.00 39.83 2.57
69 70 1.083489 CCACGCAACACCGTTATCAT 58.917 50.000 0.00 0.00 39.83 2.45
70 71 0.249953 ACCACGCAACACCGTTATCA 60.250 50.000 0.00 0.00 39.83 2.15
71 72 0.165079 CACCACGCAACACCGTTATC 59.835 55.000 0.00 0.00 39.83 1.75
72 73 0.533308 ACACCACGCAACACCGTTAT 60.533 50.000 0.00 0.00 39.83 1.89
73 74 0.743701 AACACCACGCAACACCGTTA 60.744 50.000 0.00 0.00 39.83 3.18
74 75 1.587933 AAACACCACGCAACACCGTT 61.588 50.000 0.00 0.00 39.83 4.44
75 76 1.587933 AAAACACCACGCAACACCGT 61.588 50.000 0.00 0.00 43.11 4.83
76 77 0.456995 AAAAACACCACGCAACACCG 60.457 50.000 0.00 0.00 0.00 4.94
77 78 3.427309 AAAAACACCACGCAACACC 57.573 47.368 0.00 0.00 0.00 4.16
94 95 9.809096 TCAAAAATGACTATTAAGTGTGCAAAA 57.191 25.926 0.00 0.00 35.56 2.44
95 96 9.462174 CTCAAAAATGACTATTAAGTGTGCAAA 57.538 29.630 0.00 0.00 35.56 3.68
96 97 8.845227 TCTCAAAAATGACTATTAAGTGTGCAA 58.155 29.630 0.00 0.00 35.56 4.08
97 98 8.389779 TCTCAAAAATGACTATTAAGTGTGCA 57.610 30.769 0.00 0.00 35.56 4.57
98 99 9.334693 CTTCTCAAAAATGACTATTAAGTGTGC 57.665 33.333 0.00 0.00 35.56 4.57
115 116 8.878769 GCCACTAAAAATTTCAACTTCTCAAAA 58.121 29.630 0.00 0.00 0.00 2.44
116 117 8.037758 TGCCACTAAAAATTTCAACTTCTCAAA 58.962 29.630 0.00 0.00 0.00 2.69
117 118 7.551585 TGCCACTAAAAATTTCAACTTCTCAA 58.448 30.769 0.00 0.00 0.00 3.02
118 119 7.106439 TGCCACTAAAAATTTCAACTTCTCA 57.894 32.000 0.00 0.00 0.00 3.27
119 120 8.593492 ATTGCCACTAAAAATTTCAACTTCTC 57.407 30.769 0.00 0.00 0.00 2.87
120 121 8.962884 AATTGCCACTAAAAATTTCAACTTCT 57.037 26.923 0.00 0.00 0.00 2.85
129 130 8.868916 CGCACTAAATAATTGCCACTAAAAATT 58.131 29.630 0.00 0.00 32.31 1.82
130 131 8.247562 TCGCACTAAATAATTGCCACTAAAAAT 58.752 29.630 0.00 0.00 32.31 1.82
131 132 7.539366 GTCGCACTAAATAATTGCCACTAAAAA 59.461 33.333 0.00 0.00 32.31 1.94
132 133 7.024768 GTCGCACTAAATAATTGCCACTAAAA 58.975 34.615 0.00 0.00 32.31 1.52
133 134 6.149640 TGTCGCACTAAATAATTGCCACTAAA 59.850 34.615 0.00 0.00 29.78 1.85
134 135 5.644206 TGTCGCACTAAATAATTGCCACTAA 59.356 36.000 0.00 0.00 29.78 2.24
135 136 5.064198 GTGTCGCACTAAATAATTGCCACTA 59.936 40.000 3.20 0.00 29.78 2.74
136 137 4.006989 TGTCGCACTAAATAATTGCCACT 58.993 39.130 0.00 0.00 29.78 4.00
137 138 4.095610 GTGTCGCACTAAATAATTGCCAC 58.904 43.478 3.20 0.00 32.31 5.01
138 139 3.753797 TGTGTCGCACTAAATAATTGCCA 59.246 39.130 10.54 0.00 35.11 4.92
139 140 4.349663 TGTGTCGCACTAAATAATTGCC 57.650 40.909 10.54 0.00 35.11 4.52
140 141 6.869421 AATTGTGTCGCACTAAATAATTGC 57.131 33.333 10.54 0.00 35.11 3.56
141 142 8.998989 CACTAATTGTGTCGCACTAAATAATTG 58.001 33.333 10.54 6.29 41.53 2.32
158 159 8.998377 GTTTTTATCCATTTTGGCACTAATTGT 58.002 29.630 0.00 0.00 37.47 2.71
159 160 9.218440 AGTTTTTATCCATTTTGGCACTAATTG 57.782 29.630 0.00 0.00 37.47 2.32
160 161 9.435688 GAGTTTTTATCCATTTTGGCACTAATT 57.564 29.630 0.00 0.00 37.47 1.40
161 162 8.592809 TGAGTTTTTATCCATTTTGGCACTAAT 58.407 29.630 0.00 0.00 37.47 1.73
162 163 7.957002 TGAGTTTTTATCCATTTTGGCACTAA 58.043 30.769 0.00 0.00 37.47 2.24
163 164 7.531857 TGAGTTTTTATCCATTTTGGCACTA 57.468 32.000 0.00 0.00 37.47 2.74
164 165 6.418057 TGAGTTTTTATCCATTTTGGCACT 57.582 33.333 0.00 0.00 37.47 4.40
165 166 7.671495 AATGAGTTTTTATCCATTTTGGCAC 57.329 32.000 0.00 0.00 37.47 5.01
166 167 9.956640 AATAATGAGTTTTTATCCATTTTGGCA 57.043 25.926 0.00 0.00 37.47 4.92
173 174 8.860088 GCAGGGTAATAATGAGTTTTTATCCAT 58.140 33.333 4.34 0.00 35.60 3.41
174 175 7.836685 TGCAGGGTAATAATGAGTTTTTATCCA 59.163 33.333 4.34 0.00 35.60 3.41
175 176 8.232913 TGCAGGGTAATAATGAGTTTTTATCC 57.767 34.615 0.00 0.00 34.23 2.59
237 238 9.884465 GACTTAGATGTGCAATAATTATGGAAC 57.116 33.333 4.14 4.14 0.00 3.62
238 239 9.066892 GGACTTAGATGTGCAATAATTATGGAA 57.933 33.333 3.86 0.00 0.00 3.53
239 240 7.665559 GGGACTTAGATGTGCAATAATTATGGA 59.334 37.037 3.86 0.00 0.00 3.41
240 241 7.448161 TGGGACTTAGATGTGCAATAATTATGG 59.552 37.037 0.00 0.00 0.00 2.74
241 242 8.394971 TGGGACTTAGATGTGCAATAATTATG 57.605 34.615 0.00 0.00 0.00 1.90
242 243 9.017509 CATGGGACTTAGATGTGCAATAATTAT 57.982 33.333 0.00 0.00 0.00 1.28
243 244 7.998383 ACATGGGACTTAGATGTGCAATAATTA 59.002 33.333 0.00 0.00 0.00 1.40
244 245 6.835488 ACATGGGACTTAGATGTGCAATAATT 59.165 34.615 0.00 0.00 0.00 1.40
245 246 6.367983 ACATGGGACTTAGATGTGCAATAAT 58.632 36.000 0.00 0.00 0.00 1.28
246 247 5.754782 ACATGGGACTTAGATGTGCAATAA 58.245 37.500 0.00 0.00 0.00 1.40
247 248 5.104569 TGACATGGGACTTAGATGTGCAATA 60.105 40.000 0.00 0.00 30.39 1.90
248 249 4.202441 GACATGGGACTTAGATGTGCAAT 58.798 43.478 0.00 0.00 30.39 3.56
249 250 3.008923 TGACATGGGACTTAGATGTGCAA 59.991 43.478 0.00 0.00 30.39 4.08
250 251 2.571202 TGACATGGGACTTAGATGTGCA 59.429 45.455 0.00 0.00 30.39 4.57
251 252 3.266510 TGACATGGGACTTAGATGTGC 57.733 47.619 0.00 0.00 30.39 4.57
252 253 7.935755 AGATTAATGACATGGGACTTAGATGTG 59.064 37.037 0.00 0.00 30.39 3.21
253 254 8.038862 AGATTAATGACATGGGACTTAGATGT 57.961 34.615 0.00 0.00 32.95 3.06
254 255 8.915057 AAGATTAATGACATGGGACTTAGATG 57.085 34.615 0.00 0.00 0.00 2.90
256 257 8.988060 TGTAAGATTAATGACATGGGACTTAGA 58.012 33.333 0.00 0.00 0.00 2.10
257 258 9.784531 ATGTAAGATTAATGACATGGGACTTAG 57.215 33.333 0.00 0.00 31.41 2.18
259 260 8.906867 CAATGTAAGATTAATGACATGGGACTT 58.093 33.333 0.00 0.00 32.92 3.01
260 261 8.274322 TCAATGTAAGATTAATGACATGGGACT 58.726 33.333 0.00 0.00 32.92 3.85
261 262 8.450578 TCAATGTAAGATTAATGACATGGGAC 57.549 34.615 0.00 0.00 32.92 4.46
262 263 8.493607 TCTCAATGTAAGATTAATGACATGGGA 58.506 33.333 0.00 2.07 32.92 4.37
263 264 8.681486 TCTCAATGTAAGATTAATGACATGGG 57.319 34.615 0.00 0.00 32.92 4.00
267 268 9.599866 ACGAATCTCAATGTAAGATTAATGACA 57.400 29.630 0.00 0.00 42.17 3.58
268 269 9.855361 CACGAATCTCAATGTAAGATTAATGAC 57.145 33.333 0.00 0.00 42.17 3.06
269 270 9.599866 ACACGAATCTCAATGTAAGATTAATGA 57.400 29.630 12.32 0.00 42.17 2.57
270 271 9.642312 CACACGAATCTCAATGTAAGATTAATG 57.358 33.333 0.00 3.72 42.17 1.90
271 272 8.830580 CCACACGAATCTCAATGTAAGATTAAT 58.169 33.333 0.00 0.00 42.17 1.40
272 273 8.038351 TCCACACGAATCTCAATGTAAGATTAA 58.962 33.333 0.00 0.00 42.17 1.40
273 274 7.552459 TCCACACGAATCTCAATGTAAGATTA 58.448 34.615 0.00 0.00 42.17 1.75
274 275 6.406370 TCCACACGAATCTCAATGTAAGATT 58.594 36.000 0.00 0.00 44.21 2.40
275 276 5.977635 TCCACACGAATCTCAATGTAAGAT 58.022 37.500 0.00 0.00 34.96 2.40
276 277 5.400066 TCCACACGAATCTCAATGTAAGA 57.600 39.130 0.00 0.00 0.00 2.10
277 278 7.953158 ATATCCACACGAATCTCAATGTAAG 57.047 36.000 0.00 0.00 0.00 2.34
278 279 8.731275 AAATATCCACACGAATCTCAATGTAA 57.269 30.769 0.00 0.00 0.00 2.41
279 280 8.731275 AAAATATCCACACGAATCTCAATGTA 57.269 30.769 0.00 0.00 0.00 2.29
280 281 7.630242 AAAATATCCACACGAATCTCAATGT 57.370 32.000 0.00 0.00 0.00 2.71
305 306 9.896645 ACATCTAGAATCAAGCATAAAGAGAAA 57.103 29.630 0.00 0.00 0.00 2.52
306 307 9.322773 CACATCTAGAATCAAGCATAAAGAGAA 57.677 33.333 0.00 0.00 0.00 2.87
307 308 7.440556 GCACATCTAGAATCAAGCATAAAGAGA 59.559 37.037 0.00 0.00 0.00 3.10
308 309 7.226128 TGCACATCTAGAATCAAGCATAAAGAG 59.774 37.037 0.00 0.00 0.00 2.85
309 310 7.049754 TGCACATCTAGAATCAAGCATAAAGA 58.950 34.615 0.00 0.00 0.00 2.52
310 311 7.255491 TGCACATCTAGAATCAAGCATAAAG 57.745 36.000 0.00 0.00 0.00 1.85
311 312 7.628769 TTGCACATCTAGAATCAAGCATAAA 57.371 32.000 0.00 0.00 0.00 1.40
312 313 7.812690 ATTGCACATCTAGAATCAAGCATAA 57.187 32.000 0.00 0.00 0.00 1.90
313 314 8.907222 TTATTGCACATCTAGAATCAAGCATA 57.093 30.769 0.00 0.00 0.00 3.14
314 315 7.812690 TTATTGCACATCTAGAATCAAGCAT 57.187 32.000 0.00 0.00 0.00 3.79
315 316 7.812690 ATTATTGCACATCTAGAATCAAGCA 57.187 32.000 0.00 0.48 0.00 3.91
316 317 9.823098 CTAATTATTGCACATCTAGAATCAAGC 57.177 33.333 0.00 0.00 0.00 4.01
319 320 9.212641 GCTCTAATTATTGCACATCTAGAATCA 57.787 33.333 0.00 0.00 0.00 2.57
320 321 9.212641 TGCTCTAATTATTGCACATCTAGAATC 57.787 33.333 0.00 0.00 0.00 2.52
321 322 9.736414 ATGCTCTAATTATTGCACATCTAGAAT 57.264 29.630 12.67 0.00 38.29 2.40
339 340 9.588096 TCTAGGACACATCTAAATATGCTCTAA 57.412 33.333 0.00 0.00 0.00 2.10
340 341 9.015367 GTCTAGGACACATCTAAATATGCTCTA 57.985 37.037 0.00 0.00 32.09 2.43
341 342 7.507277 TGTCTAGGACACATCTAAATATGCTCT 59.493 37.037 0.00 0.00 37.67 4.09
342 343 7.661968 TGTCTAGGACACATCTAAATATGCTC 58.338 38.462 0.00 0.00 37.67 4.26
343 344 7.603180 TGTCTAGGACACATCTAAATATGCT 57.397 36.000 0.00 0.00 37.67 3.79
357 358 4.974645 AACTTTGGATGTGTCTAGGACA 57.025 40.909 0.00 0.00 40.50 4.02
358 359 7.923414 ATAAAACTTTGGATGTGTCTAGGAC 57.077 36.000 0.00 0.00 0.00 3.85
359 360 9.444600 GTAATAAAACTTTGGATGTGTCTAGGA 57.555 33.333 0.00 0.00 0.00 2.94
360 361 8.674607 GGTAATAAAACTTTGGATGTGTCTAGG 58.325 37.037 0.00 0.00 0.00 3.02
361 362 9.226606 TGGTAATAAAACTTTGGATGTGTCTAG 57.773 33.333 0.00 0.00 0.00 2.43
362 363 9.226606 CTGGTAATAAAACTTTGGATGTGTCTA 57.773 33.333 0.00 0.00 0.00 2.59
363 364 7.942341 TCTGGTAATAAAACTTTGGATGTGTCT 59.058 33.333 0.00 0.00 0.00 3.41
364 365 8.106247 TCTGGTAATAAAACTTTGGATGTGTC 57.894 34.615 0.00 0.00 0.00 3.67
365 366 8.522830 CATCTGGTAATAAAACTTTGGATGTGT 58.477 33.333 0.00 0.00 0.00 3.72
366 367 8.739039 TCATCTGGTAATAAAACTTTGGATGTG 58.261 33.333 0.00 0.00 0.00 3.21
367 368 8.877864 TCATCTGGTAATAAAACTTTGGATGT 57.122 30.769 0.00 0.00 0.00 3.06
370 371 8.966868 GGAATCATCTGGTAATAAAACTTTGGA 58.033 33.333 0.00 0.00 0.00 3.53
371 372 8.971073 AGGAATCATCTGGTAATAAAACTTTGG 58.029 33.333 0.00 0.00 0.00 3.28
375 376 9.533831 ACAAAGGAATCATCTGGTAATAAAACT 57.466 29.630 0.00 0.00 0.00 2.66
399 400 4.527944 AGAGATCACATCGAAGGAGTACA 58.472 43.478 0.00 0.00 0.00 2.90
400 401 5.508200 AAGAGATCACATCGAAGGAGTAC 57.492 43.478 0.00 0.00 0.00 2.73
411 412 6.989659 ACTTCAATGCAAAAAGAGATCACAT 58.010 32.000 11.65 0.00 0.00 3.21
415 416 6.149504 GCAACTTCAATGCAAAAAGAGATC 57.850 37.500 11.65 0.00 43.29 2.75
433 434 2.229792 ACATGTCCGATTTGTGCAACT 58.770 42.857 0.00 0.00 38.04 3.16
449 450 0.247655 CATCGTTCGGCGGAAACATG 60.248 55.000 7.21 9.59 41.72 3.21
481 482 5.612725 AATTGCACTTTTCCCTTTTGAGA 57.387 34.783 0.00 0.00 0.00 3.27
482 483 5.007921 CCAAATTGCACTTTTCCCTTTTGAG 59.992 40.000 0.00 0.00 0.00 3.02
483 484 4.880696 CCAAATTGCACTTTTCCCTTTTGA 59.119 37.500 0.00 0.00 0.00 2.69
484 485 4.880696 TCCAAATTGCACTTTTCCCTTTTG 59.119 37.500 0.00 0.00 0.00 2.44
489 490 3.321968 AGAGTCCAAATTGCACTTTTCCC 59.678 43.478 0.00 0.00 0.00 3.97
610 611 1.662044 GTTGCCAGGAAAGCAGGTG 59.338 57.895 0.00 0.00 42.17 4.00
719 720 0.421495 TTGAGGATGGAGGGGGAGAA 59.579 55.000 0.00 0.00 0.00 2.87
722 723 0.046242 ATGTTGAGGATGGAGGGGGA 59.954 55.000 0.00 0.00 0.00 4.81
1062 1068 1.153349 GAAGACGGGCATGAGGTCC 60.153 63.158 0.00 0.00 38.17 4.46
1204 1214 2.226330 CCCACGAAAACTCCATGAACA 58.774 47.619 0.00 0.00 0.00 3.18
1383 1394 3.735820 CGAATCAGTTTCATTGGCATGGG 60.736 47.826 0.00 0.00 33.66 4.00
1389 1400 3.916172 CACTTGCGAATCAGTTTCATTGG 59.084 43.478 0.00 0.00 33.66 3.16
1471 1482 2.749839 GCCAGGCGTGCCATGTAA 60.750 61.111 14.29 0.00 38.92 2.41
1605 1628 3.654321 TCTCATGACCATATCCCAGCAAT 59.346 43.478 0.00 0.00 0.00 3.56
1647 1670 3.119602 CCACAAGTTGCATGGAGAAGATG 60.120 47.826 6.66 0.00 35.33 2.90
1806 1831 3.248266 CAAAACTAATGAAGCAGCTGGC 58.752 45.455 17.12 7.98 45.30 4.85
2100 2125 2.829023 TCCCCTGAAGTAGTACCAAGG 58.171 52.381 0.00 1.89 0.00 3.61
2356 2381 6.711579 ACACAGTAATACGACAACAACAAAG 58.288 36.000 0.00 0.00 0.00 2.77
2368 2402 4.103357 GCACAGGAGTACACAGTAATACG 58.897 47.826 0.00 0.00 0.00 3.06
2421 2455 9.654663 AACCAATTTGATACTCAGTACTAAGAC 57.345 33.333 0.00 0.00 0.00 3.01
2503 2537 6.098982 TCACCAATTTGTTGGGTATCAGTTTT 59.901 34.615 11.50 0.00 46.23 2.43
2599 2634 2.559698 ATGGAATTGTGTGTGTCCGA 57.440 45.000 0.00 0.00 32.45 4.55
2600 2635 2.551887 TGAATGGAATTGTGTGTGTCCG 59.448 45.455 0.00 0.00 36.07 4.79
2601 2636 4.037923 AGTTGAATGGAATTGTGTGTGTCC 59.962 41.667 0.00 0.00 36.07 4.02
2602 2637 5.009010 AGAGTTGAATGGAATTGTGTGTGTC 59.991 40.000 0.00 0.00 36.07 3.67
2603 2638 4.889409 AGAGTTGAATGGAATTGTGTGTGT 59.111 37.500 0.00 0.00 36.07 3.72
2604 2639 5.443185 AGAGTTGAATGGAATTGTGTGTG 57.557 39.130 0.00 0.00 36.07 3.82
2605 2640 5.360714 ACAAGAGTTGAATGGAATTGTGTGT 59.639 36.000 0.00 0.00 36.07 3.72
2606 2641 5.835257 ACAAGAGTTGAATGGAATTGTGTG 58.165 37.500 0.00 0.00 36.07 3.82
2607 2642 6.772716 AGTACAAGAGTTGAATGGAATTGTGT 59.227 34.615 0.00 0.00 36.07 3.72
2608 2643 7.080099 CAGTACAAGAGTTGAATGGAATTGTG 58.920 38.462 0.00 0.00 36.07 3.33
2609 2644 6.294176 GCAGTACAAGAGTTGAATGGAATTGT 60.294 38.462 0.00 0.00 36.07 2.71
2610 2645 6.088824 GCAGTACAAGAGTTGAATGGAATTG 58.911 40.000 0.00 0.00 36.07 2.32
2611 2646 5.769662 TGCAGTACAAGAGTTGAATGGAATT 59.230 36.000 0.00 0.00 40.93 2.17
2612 2647 5.182001 GTGCAGTACAAGAGTTGAATGGAAT 59.818 40.000 0.00 0.00 0.00 3.01
2613 2648 4.515191 GTGCAGTACAAGAGTTGAATGGAA 59.485 41.667 0.00 0.00 0.00 3.53
2614 2649 4.065088 GTGCAGTACAAGAGTTGAATGGA 58.935 43.478 0.00 0.00 0.00 3.41
2615 2650 3.814842 TGTGCAGTACAAGAGTTGAATGG 59.185 43.478 0.00 0.00 36.06 3.16
2616 2651 5.422666 TTGTGCAGTACAAGAGTTGAATG 57.577 39.130 0.00 0.00 44.07 2.67
2627 2662 5.872617 GGTGTATATCTGTTTGTGCAGTACA 59.127 40.000 0.00 0.00 37.70 2.90
2666 2730 2.100605 AAGTTCCTCGATGAACCAGC 57.899 50.000 24.35 5.53 44.55 4.85
2714 2778 2.950433 AGGTACATACGTGACAAACCG 58.050 47.619 0.00 0.00 0.00 4.44
3019 3086 7.830099 ATTATTAAGCCTTTCAAGGATGGAG 57.170 36.000 9.97 0.00 45.74 3.86
3061 3267 3.518634 AACGGTGCAAAGTTTGAACAT 57.481 38.095 24.93 11.98 41.21 2.71
3106 3329 2.964464 TGCCTCAATGCTTCAAAAGGAA 59.036 40.909 0.00 0.00 30.69 3.36
3108 3331 2.298163 ACTGCCTCAATGCTTCAAAAGG 59.702 45.455 0.00 0.00 0.00 3.11
3391 3614 6.830873 TCACTACTACTAGAACCCAGAAAC 57.169 41.667 0.00 0.00 0.00 2.78
3520 3744 4.768448 TCAAACCATTGCTCAGTTGATCAT 59.232 37.500 0.00 0.00 36.45 2.45
3521 3745 4.143543 TCAAACCATTGCTCAGTTGATCA 58.856 39.130 0.00 0.00 36.45 2.92
3529 3753 2.224257 GGCCTTTTCAAACCATTGCTCA 60.224 45.455 0.00 0.00 36.45 4.26
3530 3754 2.224257 TGGCCTTTTCAAACCATTGCTC 60.224 45.455 3.32 0.00 36.45 4.26
3620 3844 0.317938 CTACTCCACGATACAGCGCC 60.318 60.000 2.29 0.00 33.86 6.53
3795 4019 3.731867 CGTTGGACCTGAATGCAAATAGC 60.732 47.826 0.00 0.00 45.96 2.97
3832 4056 5.053978 AGAATTTAAGACCAGCATAGGGG 57.946 43.478 0.00 0.00 0.00 4.79
4265 4489 8.989653 AGAAAACAAAATCGGAACTGTAAAAA 57.010 26.923 0.00 0.00 0.00 1.94
4320 4544 2.783135 AGATTGTCTGGCGTGTTCAAT 58.217 42.857 0.00 0.00 0.00 2.57
4331 4555 4.748892 ACATAGACGTCCAAGATTGTCTG 58.251 43.478 13.01 0.00 41.50 3.51
4439 4663 2.415512 GTCCTGTAAATGGAAGTGCGAC 59.584 50.000 0.00 0.00 35.10 5.19
4488 4713 2.912295 AGGGGATTCAACAAAATTGGGG 59.088 45.455 0.00 0.00 0.00 4.96
4490 4715 4.325972 CCAAGGGGATTCAACAAAATTGG 58.674 43.478 0.00 0.00 35.59 3.16
4598 4823 0.037590 ATTGCTTAACGGCCTGTCCA 59.962 50.000 0.00 0.00 34.01 4.02
4662 4887 6.013553 AGCATCAGCCAGAATAATCTACTCAT 60.014 38.462 0.00 0.00 43.56 2.90
4691 4916 2.361757 TGCCACATTTCAGACAAGGTTG 59.638 45.455 0.00 0.00 0.00 3.77
4703 4928 9.553064 TTAAAACACAATAGAAATGCCACATTT 57.447 25.926 5.28 5.28 0.00 2.32
4800 5056 0.179000 ATAAGAGCCACCAGGAAGCG 59.821 55.000 0.00 0.00 36.89 4.68
4807 5063 2.040278 GGATGCCATATAAGAGCCACCA 59.960 50.000 0.00 0.00 0.00 4.17
4855 5111 9.707957 AATTATGTCCAAGGATACACCAATTAA 57.292 29.630 0.00 0.00 42.04 1.40
4962 5218 3.038280 TGAAGGAACACTCTCCAACAGA 58.962 45.455 0.00 0.00 38.02 3.41
5274 5530 6.267070 AGAGTGTTTAGATCGCTAAAGTAGC 58.733 40.000 0.00 0.00 44.78 3.58
5339 5595 5.305644 AGAATATGTCAGCTGGGGTAAGTAG 59.694 44.000 15.13 0.00 0.00 2.57
5468 5727 1.189403 CGAGTCTGTTTCGCGTATCC 58.811 55.000 5.77 0.00 0.00 2.59
5486 5745 0.940126 AACTGAAGACAAGCACTGCG 59.060 50.000 0.00 0.00 0.00 5.18
5528 5787 7.775561 GGAACACATATAAATGAGAAAGGGACT 59.224 37.037 0.00 0.00 36.99 3.85
5553 5819 6.183360 GCACAAATTCTTAAAAATCAGCTCGG 60.183 38.462 0.00 0.00 0.00 4.63
5624 5894 1.610522 ACACATGCAAGCCTTCTCAAC 59.389 47.619 0.00 0.00 0.00 3.18
5635 5905 3.632855 TGCGATACAAAACACATGCAA 57.367 38.095 0.00 0.00 0.00 4.08
5641 5911 4.630069 ACCAGAGTATGCGATACAAAACAC 59.370 41.667 8.40 0.00 38.21 3.32
5690 5960 9.476202 GGAGCTTAATCAGTTGTTGTAAATTTT 57.524 29.630 0.00 0.00 0.00 1.82
5700 5970 4.373156 AACAGGGAGCTTAATCAGTTGT 57.627 40.909 0.00 0.00 0.00 3.32
5701 5971 4.330074 CGTAACAGGGAGCTTAATCAGTTG 59.670 45.833 0.00 0.00 0.00 3.16
5715 5986 1.486211 AGGATCCAGTCGTAACAGGG 58.514 55.000 15.82 0.00 33.03 4.45
5758 6096 1.921346 TTGATGGCGGGGTAGTGGT 60.921 57.895 0.00 0.00 0.00 4.16
5770 6108 3.885297 ACACAAAAGAGGAGTGTTGATGG 59.115 43.478 0.00 0.00 43.40 3.51
5777 6115 5.818136 TCAGAAAACACAAAAGAGGAGTG 57.182 39.130 0.00 0.00 39.12 3.51
5886 6226 4.586235 ACCACAAAGGCGGCAGCT 62.586 61.111 13.08 0.00 43.14 4.24
5918 7088 4.406003 AGGTAATCTGGAACTTATCGCACT 59.594 41.667 0.00 0.00 0.00 4.40
5955 7131 1.115467 CGTGATAGAAGGGGAGCTGT 58.885 55.000 0.00 0.00 0.00 4.40
5962 7138 2.379972 AGAGGTGACGTGATAGAAGGG 58.620 52.381 0.00 0.00 0.00 3.95
5963 7139 3.193691 ACAAGAGGTGACGTGATAGAAGG 59.806 47.826 0.00 0.00 0.00 3.46
5964 7140 4.082733 TGACAAGAGGTGACGTGATAGAAG 60.083 45.833 0.00 0.00 0.00 2.85
6019 7195 4.191544 CCTTTCGAAGGCACAGATTCATA 58.808 43.478 0.94 0.00 42.78 2.15
6020 7196 3.012518 CCTTTCGAAGGCACAGATTCAT 58.987 45.455 0.94 0.00 42.78 2.57
6021 7197 2.426522 CCTTTCGAAGGCACAGATTCA 58.573 47.619 0.94 0.00 42.78 2.57
6044 7220 3.059733 CGCGTGTACTACTAGCTAAGGAG 60.060 52.174 0.00 0.00 42.62 3.69
6045 7221 2.868583 CGCGTGTACTACTAGCTAAGGA 59.131 50.000 0.00 0.00 0.00 3.36
6046 7222 2.601741 GCGCGTGTACTACTAGCTAAGG 60.602 54.545 8.43 0.00 0.00 2.69
6047 7223 2.031314 TGCGCGTGTACTACTAGCTAAG 59.969 50.000 8.43 0.00 32.78 2.18
6048 7224 2.009051 TGCGCGTGTACTACTAGCTAA 58.991 47.619 8.43 0.00 32.78 3.09
6050 7226 1.022735 ATGCGCGTGTACTACTAGCT 58.977 50.000 8.43 0.00 32.78 3.32
6051 7227 1.779724 GAATGCGCGTGTACTACTAGC 59.220 52.381 8.43 0.72 0.00 3.42
6052 7228 2.034789 CGAATGCGCGTGTACTACTAG 58.965 52.381 8.43 0.00 0.00 2.57
6053 7229 1.665169 TCGAATGCGCGTGTACTACTA 59.335 47.619 8.43 0.00 37.46 1.82
6054 7230 0.448990 TCGAATGCGCGTGTACTACT 59.551 50.000 8.43 0.00 37.46 2.57
6055 7231 1.474017 ATCGAATGCGCGTGTACTAC 58.526 50.000 8.43 0.00 37.46 2.73
6102 7278 1.065928 GCGACGGTATCCCAGTCAG 59.934 63.158 0.00 0.00 35.40 3.51
6103 7279 2.420568 GGCGACGGTATCCCAGTCA 61.421 63.158 0.00 0.00 35.40 3.41
6104 7280 2.416260 GGCGACGGTATCCCAGTC 59.584 66.667 0.00 0.00 33.61 3.51
6105 7281 2.363276 TGGCGACGGTATCCCAGT 60.363 61.111 0.00 0.00 0.00 4.00
6123 7299 4.682860 TCGCTACACTTCTTTTCTTTACCG 59.317 41.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.