Multiple sequence alignment - TraesCS3D01G251500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G251500 chr3D 100.000 4634 0 0 782 5415 352153678 352149045 0.000000e+00 8558.0
1 TraesCS3D01G251500 chr3D 100.000 625 0 0 1 625 352154459 352153835 0.000000e+00 1155.0
2 TraesCS3D01G251500 chr3D 98.492 199 3 0 427 625 352153645 352153447 8.630000e-93 351.0
3 TraesCS3D01G251500 chr3D 98.492 199 3 0 815 1013 352154033 352153835 8.630000e-93 351.0
4 TraesCS3D01G251500 chr3D 100.000 58 0 0 3911 3968 352150448 352150391 2.060000e-19 108.0
5 TraesCS3D01G251500 chr3D 100.000 58 0 0 4012 4069 352150549 352150492 2.060000e-19 108.0
6 TraesCS3D01G251500 chr3D 95.833 48 2 0 368 415 352153677 352153630 1.620000e-10 78.7
7 TraesCS3D01G251500 chr3D 95.833 48 2 0 783 830 352154092 352154045 1.620000e-10 78.7
8 TraesCS3D01G251500 chr3D 100.000 28 0 0 3368 3395 352150470 352150443 1.000000e-02 52.8
9 TraesCS3D01G251500 chr3D 100.000 28 0 0 3990 4017 352151092 352151065 1.000000e-02 52.8
10 TraesCS3D01G251500 chr3B 97.270 3223 59 15 783 3991 450855008 450851801 0.000000e+00 5437.0
11 TraesCS3D01G251500 chr3B 88.064 1307 91 27 4066 5336 450851794 450850517 0.000000e+00 1489.0
12 TraesCS3D01G251500 chr3B 95.918 245 7 3 173 415 450855204 450854961 1.410000e-105 394.0
13 TraesCS3D01G251500 chr3B 96.517 201 5 1 427 625 450854976 450854776 1.120000e-86 331.0
14 TraesCS3D01G251500 chr3B 93.151 146 8 2 1 144 9523662 9523517 4.250000e-51 213.0
15 TraesCS3D01G251500 chr3B 93.846 65 3 1 4012 4075 450851881 450851817 4.460000e-16 97.1
16 TraesCS3D01G251500 chr3B 100.000 28 0 0 3990 4017 450852421 450852394 1.000000e-02 52.8
17 TraesCS3D01G251500 chr3A 97.241 2392 49 9 782 3169 470105099 470102721 0.000000e+00 4036.0
18 TraesCS3D01G251500 chr3A 91.757 1286 77 15 4066 5344 470101865 470100602 0.000000e+00 1760.0
19 TraesCS3D01G251500 chr3A 98.118 850 13 3 3143 3991 470102719 470101872 0.000000e+00 1478.0
20 TraesCS3D01G251500 chr3A 92.647 272 16 3 147 415 470105321 470105051 6.580000e-104 388.0
21 TraesCS3D01G251500 chr3A 98.492 199 3 0 427 625 470105066 470104868 8.630000e-93 351.0
22 TraesCS3D01G251500 chr3A 98.246 57 1 0 4013 4069 470101951 470101895 3.450000e-17 100.0
23 TraesCS3D01G251500 chr3A 92.308 52 4 0 5342 5393 470100553 470100502 2.090000e-09 75.0
24 TraesCS3D01G251500 chr3A 100.000 28 0 0 3990 4017 470102494 470102467 1.000000e-02 52.8
25 TraesCS3D01G251500 chr7A 91.525 59 3 2 3909 3966 407985869 407985926 4.500000e-11 80.5
26 TraesCS3D01G251500 chr7A 91.228 57 3 2 4012 4067 407985871 407985926 5.820000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G251500 chr3D 352149045 352154459 5414 True 1089.40 8558 98.865000 1 5415 10 chr3D.!!$R1 5414
1 TraesCS3D01G251500 chr3B 450850517 450855204 4687 True 1300.15 5437 95.269167 173 5336 6 chr3B.!!$R2 5163
2 TraesCS3D01G251500 chr3A 470100502 470105321 4819 True 1030.10 4036 96.101125 147 5393 8 chr3A.!!$R1 5246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 496 0.041312 CATAAACTATGCGCGCCCAC 60.041 55.000 30.77 0.47 0.00 4.61 F
540 543 0.109132 CTTCGCCTGGAACATTTGCC 60.109 55.000 0.00 0.00 38.20 4.52 F
555 558 0.178861 TTGCCTCTTCCTCCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36 F
1831 1839 0.242017 GTTTGCAGGTGATCAGTGGC 59.758 55.000 0.00 0.00 0.00 5.01 F
1962 1970 0.322816 TCCACTCTTCTGCCATTGCC 60.323 55.000 0.00 0.00 36.33 4.52 F
3590 3628 1.211457 CATAGCTCCACTCCTTTGGCT 59.789 52.381 0.00 0.00 36.48 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 1970 0.391661 TTAAGGCCTCTCTTGCAGCG 60.392 55.000 5.23 0.0 0.00 5.18 R
2210 2219 5.707066 AAGTTCCCTTCTCAATATCTGCT 57.293 39.130 0.00 0.0 0.00 4.24 R
2368 2377 6.433093 AGACAAAGTGGACAACAAGTAAAAGT 59.567 34.615 0.00 0.0 0.00 2.66 R
3081 3090 4.293415 CTGAAGATTTTTGCCTGTCACAC 58.707 43.478 0.00 0.0 0.00 3.82 R
3735 3774 6.840780 ATCCTTGAGTTTTACAAATCCTGG 57.159 37.500 0.00 0.0 0.00 4.45 R
4628 4679 0.105593 AGATGCAGTCGCCTACATGG 59.894 55.000 0.00 0.0 37.32 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.844257 ATGTAAATGATGTTTTTCTTCCCAAAA 57.156 25.926 0.00 0.00 0.00 2.44
68 69 9.844257 TGTAAATGATGTTTTTCTTCCCAAAAT 57.156 25.926 0.00 0.00 0.00 1.82
71 72 8.611654 AATGATGTTTTTCTTCCCAAAATCTG 57.388 30.769 0.00 0.00 0.00 2.90
72 73 6.523840 TGATGTTTTTCTTCCCAAAATCTGG 58.476 36.000 0.00 0.00 45.97 3.86
73 74 4.702831 TGTTTTTCTTCCCAAAATCTGGC 58.297 39.130 0.00 0.00 44.90 4.85
74 75 4.163078 TGTTTTTCTTCCCAAAATCTGGCA 59.837 37.500 0.00 0.00 44.90 4.92
75 76 5.163216 TGTTTTTCTTCCCAAAATCTGGCAT 60.163 36.000 0.00 0.00 44.90 4.40
76 77 6.042552 TGTTTTTCTTCCCAAAATCTGGCATA 59.957 34.615 0.00 0.00 44.90 3.14
77 78 5.920193 TTTCTTCCCAAAATCTGGCATAG 57.080 39.130 0.00 0.00 44.90 2.23
78 79 3.902218 TCTTCCCAAAATCTGGCATAGG 58.098 45.455 0.00 0.00 44.90 2.57
79 80 3.269381 TCTTCCCAAAATCTGGCATAGGT 59.731 43.478 0.00 0.00 44.90 3.08
80 81 3.756082 TCCCAAAATCTGGCATAGGTT 57.244 42.857 0.00 0.00 44.90 3.50
81 82 3.364549 TCCCAAAATCTGGCATAGGTTG 58.635 45.455 0.00 0.00 44.90 3.77
82 83 3.011144 TCCCAAAATCTGGCATAGGTTGA 59.989 43.478 0.00 0.00 44.90 3.18
83 84 3.962718 CCCAAAATCTGGCATAGGTTGAT 59.037 43.478 0.00 0.00 44.90 2.57
84 85 4.406649 CCCAAAATCTGGCATAGGTTGATT 59.593 41.667 0.00 0.00 44.90 2.57
85 86 5.104817 CCCAAAATCTGGCATAGGTTGATTT 60.105 40.000 4.78 4.78 44.90 2.17
86 87 6.408869 CCAAAATCTGGCATAGGTTGATTTT 58.591 36.000 13.81 13.81 43.62 1.82
87 88 6.880529 CCAAAATCTGGCATAGGTTGATTTTT 59.119 34.615 15.87 4.43 42.05 1.94
105 106 3.525800 TTTTTCCTTGGAGCTTAGCCT 57.474 42.857 0.00 0.00 0.00 4.58
106 107 2.789409 TTTCCTTGGAGCTTAGCCTC 57.211 50.000 0.00 0.00 0.00 4.70
112 113 4.058434 GAGCTTAGCCTCCACCCT 57.942 61.111 0.00 0.00 0.00 4.34
113 114 1.826709 GAGCTTAGCCTCCACCCTC 59.173 63.158 0.00 0.00 0.00 4.30
114 115 0.978146 GAGCTTAGCCTCCACCCTCA 60.978 60.000 0.00 0.00 0.00 3.86
115 116 0.327000 AGCTTAGCCTCCACCCTCAT 60.327 55.000 0.00 0.00 0.00 2.90
116 117 0.179034 GCTTAGCCTCCACCCTCATG 60.179 60.000 0.00 0.00 0.00 3.07
117 118 1.207791 CTTAGCCTCCACCCTCATGT 58.792 55.000 0.00 0.00 0.00 3.21
118 119 2.398588 CTTAGCCTCCACCCTCATGTA 58.601 52.381 0.00 0.00 0.00 2.29
119 120 2.561209 TAGCCTCCACCCTCATGTAA 57.439 50.000 0.00 0.00 0.00 2.41
120 121 0.912486 AGCCTCCACCCTCATGTAAC 59.088 55.000 0.00 0.00 0.00 2.50
121 122 0.618458 GCCTCCACCCTCATGTAACA 59.382 55.000 0.00 0.00 0.00 2.41
122 123 1.212935 GCCTCCACCCTCATGTAACAT 59.787 52.381 0.00 0.00 0.00 2.71
123 124 2.438021 GCCTCCACCCTCATGTAACATA 59.562 50.000 0.00 0.00 0.00 2.29
124 125 3.073062 GCCTCCACCCTCATGTAACATAT 59.927 47.826 0.00 0.00 0.00 1.78
125 126 4.446311 GCCTCCACCCTCATGTAACATATT 60.446 45.833 0.00 0.00 0.00 1.28
126 127 5.694995 CCTCCACCCTCATGTAACATATTT 58.305 41.667 0.00 0.00 0.00 1.40
127 128 6.129179 CCTCCACCCTCATGTAACATATTTT 58.871 40.000 0.00 0.00 0.00 1.82
128 129 7.287061 CCTCCACCCTCATGTAACATATTTTA 58.713 38.462 0.00 0.00 0.00 1.52
129 130 7.944554 CCTCCACCCTCATGTAACATATTTTAT 59.055 37.037 0.00 0.00 0.00 1.40
130 131 9.354673 CTCCACCCTCATGTAACATATTTTATT 57.645 33.333 0.00 0.00 0.00 1.40
131 132 9.707957 TCCACCCTCATGTAACATATTTTATTT 57.292 29.630 0.00 0.00 0.00 1.40
170 171 0.179156 CAAGCACGCTTGGGCATAAG 60.179 55.000 21.47 0.00 46.88 1.73
227 228 4.770010 GGATGGGATCGGGCATAAAATTAA 59.230 41.667 0.00 0.00 0.00 1.40
378 381 4.820284 GCTTGAGCAGTACTTGACTTTT 57.180 40.909 0.00 0.00 41.59 2.27
379 382 4.777823 GCTTGAGCAGTACTTGACTTTTC 58.222 43.478 0.00 0.00 41.59 2.29
380 383 4.319839 GCTTGAGCAGTACTTGACTTTTCC 60.320 45.833 0.00 0.00 41.59 3.13
381 384 3.740115 TGAGCAGTACTTGACTTTTCCC 58.260 45.455 0.00 0.00 35.64 3.97
382 385 3.391296 TGAGCAGTACTTGACTTTTCCCT 59.609 43.478 0.00 0.00 35.64 4.20
383 386 3.997681 GAGCAGTACTTGACTTTTCCCTC 59.002 47.826 0.00 0.00 35.64 4.30
384 387 3.391296 AGCAGTACTTGACTTTTCCCTCA 59.609 43.478 0.00 0.00 35.64 3.86
385 388 4.134563 GCAGTACTTGACTTTTCCCTCAA 58.865 43.478 0.00 0.00 35.64 3.02
386 389 4.578928 GCAGTACTTGACTTTTCCCTCAAA 59.421 41.667 0.00 0.00 35.64 2.69
387 390 5.241728 GCAGTACTTGACTTTTCCCTCAAAT 59.758 40.000 0.00 0.00 35.64 2.32
388 391 6.568653 GCAGTACTTGACTTTTCCCTCAAATC 60.569 42.308 0.00 0.00 35.64 2.17
389 392 6.712547 CAGTACTTGACTTTTCCCTCAAATCT 59.287 38.462 0.00 0.00 35.64 2.40
390 393 6.712547 AGTACTTGACTTTTCCCTCAAATCTG 59.287 38.462 0.00 0.00 33.13 2.90
391 394 5.449553 ACTTGACTTTTCCCTCAAATCTGT 58.550 37.500 0.00 0.00 0.00 3.41
392 395 5.300286 ACTTGACTTTTCCCTCAAATCTGTG 59.700 40.000 0.00 0.00 0.00 3.66
393 396 3.569701 TGACTTTTCCCTCAAATCTGTGC 59.430 43.478 0.00 0.00 0.00 4.57
394 397 2.554032 ACTTTTCCCTCAAATCTGTGCG 59.446 45.455 0.00 0.00 0.00 5.34
395 398 1.533625 TTTCCCTCAAATCTGTGCGG 58.466 50.000 0.00 0.00 0.00 5.69
396 399 0.322456 TTCCCTCAAATCTGTGCGGG 60.322 55.000 0.00 0.00 0.00 6.13
397 400 1.002134 CCCTCAAATCTGTGCGGGT 60.002 57.895 0.00 0.00 0.00 5.28
398 401 1.026718 CCCTCAAATCTGTGCGGGTC 61.027 60.000 0.00 0.00 0.00 4.46
399 402 0.321564 CCTCAAATCTGTGCGGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
400 403 1.522668 CTCAAATCTGTGCGGGTCAA 58.477 50.000 0.00 0.00 0.00 3.18
401 404 1.879380 CTCAAATCTGTGCGGGTCAAA 59.121 47.619 0.00 0.00 0.00 2.69
402 405 2.293122 CTCAAATCTGTGCGGGTCAAAA 59.707 45.455 0.00 0.00 0.00 2.44
403 406 2.690497 TCAAATCTGTGCGGGTCAAAAA 59.310 40.909 0.00 0.00 0.00 1.94
404 407 3.052036 CAAATCTGTGCGGGTCAAAAAG 58.948 45.455 0.00 0.00 0.00 2.27
405 408 2.270352 ATCTGTGCGGGTCAAAAAGA 57.730 45.000 0.00 0.00 0.00 2.52
406 409 1.593196 TCTGTGCGGGTCAAAAAGAG 58.407 50.000 0.00 0.00 0.00 2.85
407 410 0.593128 CTGTGCGGGTCAAAAAGAGG 59.407 55.000 0.00 0.00 0.00 3.69
408 411 1.285950 GTGCGGGTCAAAAAGAGGC 59.714 57.895 0.00 0.00 0.00 4.70
409 412 1.150536 TGCGGGTCAAAAAGAGGCT 59.849 52.632 0.00 0.00 0.00 4.58
410 413 0.889186 TGCGGGTCAAAAAGAGGCTC 60.889 55.000 6.34 6.34 0.00 4.70
411 414 1.912371 GCGGGTCAAAAAGAGGCTCG 61.912 60.000 9.22 0.00 0.00 5.03
412 415 1.876664 GGGTCAAAAAGAGGCTCGC 59.123 57.895 9.22 0.00 0.00 5.03
413 416 0.606673 GGGTCAAAAAGAGGCTCGCT 60.607 55.000 9.22 0.00 0.00 4.93
414 417 0.799393 GGTCAAAAAGAGGCTCGCTC 59.201 55.000 9.22 0.00 0.00 5.03
415 418 1.512926 GTCAAAAAGAGGCTCGCTCA 58.487 50.000 9.22 0.00 0.00 4.26
416 419 1.195674 GTCAAAAAGAGGCTCGCTCAC 59.804 52.381 9.22 0.00 0.00 3.51
417 420 0.519077 CAAAAAGAGGCTCGCTCACC 59.481 55.000 9.22 0.00 0.00 4.02
418 421 0.606673 AAAAAGAGGCTCGCTCACCC 60.607 55.000 9.22 0.00 0.00 4.61
419 422 2.470938 AAAAGAGGCTCGCTCACCCC 62.471 60.000 9.22 0.00 0.00 4.95
420 423 3.914551 AAGAGGCTCGCTCACCCCT 62.915 63.158 9.22 0.00 0.00 4.79
421 424 3.844090 GAGGCTCGCTCACCCCTC 61.844 72.222 0.00 0.00 37.33 4.30
424 427 3.760035 GCTCGCTCACCCCTCGAA 61.760 66.667 0.00 0.00 0.00 3.71
425 428 2.970639 CTCGCTCACCCCTCGAAA 59.029 61.111 0.00 0.00 0.00 3.46
426 429 1.292223 CTCGCTCACCCCTCGAAAA 59.708 57.895 0.00 0.00 0.00 2.29
427 430 0.320421 CTCGCTCACCCCTCGAAAAA 60.320 55.000 0.00 0.00 0.00 1.94
445 448 4.898607 AAAAAGGCTCGCTGGACA 57.101 50.000 0.00 0.00 0.00 4.02
446 449 2.331265 AAAAAGGCTCGCTGGACAC 58.669 52.632 0.00 0.00 0.00 3.67
447 450 1.507141 AAAAAGGCTCGCTGGACACG 61.507 55.000 0.00 0.00 0.00 4.49
448 451 2.660258 AAAAGGCTCGCTGGACACGT 62.660 55.000 0.00 0.00 0.00 4.49
449 452 1.812686 AAAGGCTCGCTGGACACGTA 61.813 55.000 0.00 0.00 0.00 3.57
450 453 1.812686 AAGGCTCGCTGGACACGTAA 61.813 55.000 0.00 0.00 0.00 3.18
451 454 1.373748 GGCTCGCTGGACACGTAAA 60.374 57.895 0.00 0.00 0.00 2.01
452 455 1.352156 GGCTCGCTGGACACGTAAAG 61.352 60.000 0.00 0.00 0.00 1.85
453 456 1.956620 GCTCGCTGGACACGTAAAGC 61.957 60.000 0.00 0.00 0.00 3.51
455 458 3.165498 GCTGGACACGTAAAGCGG 58.835 61.111 0.00 0.00 46.52 5.52
488 491 5.560148 GGATAAATCCATAAACTATGCGCG 58.440 41.667 0.00 0.00 46.38 6.86
489 492 2.969443 AATCCATAAACTATGCGCGC 57.031 45.000 27.26 27.26 34.85 6.86
490 493 1.156736 ATCCATAAACTATGCGCGCC 58.843 50.000 30.77 11.42 34.85 6.53
491 494 0.882927 TCCATAAACTATGCGCGCCC 60.883 55.000 30.77 1.83 34.85 6.13
492 495 1.163420 CCATAAACTATGCGCGCCCA 61.163 55.000 30.77 15.46 34.85 5.36
493 496 0.041312 CATAAACTATGCGCGCCCAC 60.041 55.000 30.77 0.47 0.00 4.61
494 497 1.164041 ATAAACTATGCGCGCCCACC 61.164 55.000 30.77 0.00 0.00 4.61
504 507 4.047125 CGCCCACCCCATTCCACT 62.047 66.667 0.00 0.00 0.00 4.00
505 508 2.043953 GCCCACCCCATTCCACTC 60.044 66.667 0.00 0.00 0.00 3.51
506 509 2.683475 CCCACCCCATTCCACTCC 59.317 66.667 0.00 0.00 0.00 3.85
507 510 2.237965 CCCACCCCATTCCACTCCA 61.238 63.158 0.00 0.00 0.00 3.86
508 511 1.583784 CCCACCCCATTCCACTCCAT 61.584 60.000 0.00 0.00 0.00 3.41
509 512 0.336048 CCACCCCATTCCACTCCATT 59.664 55.000 0.00 0.00 0.00 3.16
510 513 1.273211 CCACCCCATTCCACTCCATTT 60.273 52.381 0.00 0.00 0.00 2.32
511 514 2.539302 CACCCCATTCCACTCCATTTT 58.461 47.619 0.00 0.00 0.00 1.82
512 515 2.497273 CACCCCATTCCACTCCATTTTC 59.503 50.000 0.00 0.00 0.00 2.29
513 516 2.110578 CCCCATTCCACTCCATTTTCC 58.889 52.381 0.00 0.00 0.00 3.13
514 517 2.292455 CCCCATTCCACTCCATTTTCCT 60.292 50.000 0.00 0.00 0.00 3.36
515 518 3.026694 CCCATTCCACTCCATTTTCCTC 58.973 50.000 0.00 0.00 0.00 3.71
516 519 3.026694 CCATTCCACTCCATTTTCCTCC 58.973 50.000 0.00 0.00 0.00 4.30
517 520 3.309410 CCATTCCACTCCATTTTCCTCCT 60.309 47.826 0.00 0.00 0.00 3.69
518 521 3.721087 TTCCACTCCATTTTCCTCCTC 57.279 47.619 0.00 0.00 0.00 3.71
519 522 1.916181 TCCACTCCATTTTCCTCCTCC 59.084 52.381 0.00 0.00 0.00 4.30
520 523 1.407437 CCACTCCATTTTCCTCCTCCG 60.407 57.143 0.00 0.00 0.00 4.63
521 524 0.253327 ACTCCATTTTCCTCCTCCGC 59.747 55.000 0.00 0.00 0.00 5.54
522 525 0.543749 CTCCATTTTCCTCCTCCGCT 59.456 55.000 0.00 0.00 0.00 5.52
523 526 0.991920 TCCATTTTCCTCCTCCGCTT 59.008 50.000 0.00 0.00 0.00 4.68
524 527 1.065418 TCCATTTTCCTCCTCCGCTTC 60.065 52.381 0.00 0.00 0.00 3.86
525 528 1.009829 CATTTTCCTCCTCCGCTTCG 58.990 55.000 0.00 0.00 0.00 3.79
526 529 0.744771 ATTTTCCTCCTCCGCTTCGC 60.745 55.000 0.00 0.00 0.00 4.70
527 530 2.798148 TTTTCCTCCTCCGCTTCGCC 62.798 60.000 0.00 0.00 0.00 5.54
528 531 4.761058 TCCTCCTCCGCTTCGCCT 62.761 66.667 0.00 0.00 0.00 5.52
529 532 4.521062 CCTCCTCCGCTTCGCCTG 62.521 72.222 0.00 0.00 0.00 4.85
530 533 4.521062 CTCCTCCGCTTCGCCTGG 62.521 72.222 0.00 0.00 0.00 4.45
532 535 4.082523 CCTCCGCTTCGCCTGGAA 62.083 66.667 0.00 0.00 0.00 3.53
533 536 2.815647 CTCCGCTTCGCCTGGAAC 60.816 66.667 0.00 0.00 0.00 3.62
534 537 3.589654 CTCCGCTTCGCCTGGAACA 62.590 63.158 0.00 0.00 0.00 3.18
535 538 2.436646 CCGCTTCGCCTGGAACAT 60.437 61.111 0.00 0.00 38.20 2.71
536 539 2.040544 CCGCTTCGCCTGGAACATT 61.041 57.895 0.00 0.00 38.20 2.71
537 540 1.586154 CCGCTTCGCCTGGAACATTT 61.586 55.000 0.00 0.00 38.20 2.32
538 541 0.454957 CGCTTCGCCTGGAACATTTG 60.455 55.000 0.00 0.00 38.20 2.32
539 542 0.733909 GCTTCGCCTGGAACATTTGC 60.734 55.000 0.00 0.00 38.20 3.68
540 543 0.109132 CTTCGCCTGGAACATTTGCC 60.109 55.000 0.00 0.00 38.20 4.52
541 544 0.539438 TTCGCCTGGAACATTTGCCT 60.539 50.000 0.00 0.00 38.20 4.75
542 545 0.960364 TCGCCTGGAACATTTGCCTC 60.960 55.000 0.00 0.00 38.20 4.70
543 546 0.962356 CGCCTGGAACATTTGCCTCT 60.962 55.000 0.00 0.00 38.20 3.69
544 547 1.260544 GCCTGGAACATTTGCCTCTT 58.739 50.000 0.00 0.00 38.20 2.85
545 548 1.203287 GCCTGGAACATTTGCCTCTTC 59.797 52.381 0.00 0.00 38.20 2.87
546 549 1.821136 CCTGGAACATTTGCCTCTTCC 59.179 52.381 0.00 0.00 38.20 3.46
547 550 2.556114 CCTGGAACATTTGCCTCTTCCT 60.556 50.000 0.00 0.00 38.20 3.36
548 551 2.751806 CTGGAACATTTGCCTCTTCCTC 59.248 50.000 0.00 0.00 38.20 3.71
549 552 2.095461 GGAACATTTGCCTCTTCCTCC 58.905 52.381 0.00 0.00 31.11 4.30
550 553 2.095461 GAACATTTGCCTCTTCCTCCC 58.905 52.381 0.00 0.00 0.00 4.30
551 554 1.376649 ACATTTGCCTCTTCCTCCCT 58.623 50.000 0.00 0.00 0.00 4.20
552 555 1.713078 ACATTTGCCTCTTCCTCCCTT 59.287 47.619 0.00 0.00 0.00 3.95
553 556 2.291217 ACATTTGCCTCTTCCTCCCTTC 60.291 50.000 0.00 0.00 0.00 3.46
554 557 0.698818 TTTGCCTCTTCCTCCCTTCC 59.301 55.000 0.00 0.00 0.00 3.46
555 558 0.178861 TTGCCTCTTCCTCCCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
556 559 0.618968 TGCCTCTTCCTCCCTTCCTC 60.619 60.000 0.00 0.00 0.00 3.71
557 560 1.341913 GCCTCTTCCTCCCTTCCTCC 61.342 65.000 0.00 0.00 0.00 4.30
558 561 1.045911 CCTCTTCCTCCCTTCCTCCG 61.046 65.000 0.00 0.00 0.00 4.63
559 562 0.324830 CTCTTCCTCCCTTCCTCCGT 60.325 60.000 0.00 0.00 0.00 4.69
560 563 1.005228 TCTTCCTCCCTTCCTCCGTA 58.995 55.000 0.00 0.00 0.00 4.02
561 564 1.112950 CTTCCTCCCTTCCTCCGTAC 58.887 60.000 0.00 0.00 0.00 3.67
562 565 0.325016 TTCCTCCCTTCCTCCGTACC 60.325 60.000 0.00 0.00 0.00 3.34
563 566 1.761271 CCTCCCTTCCTCCGTACCC 60.761 68.421 0.00 0.00 0.00 3.69
564 567 1.761271 CTCCCTTCCTCCGTACCCC 60.761 68.421 0.00 0.00 0.00 4.95
565 568 2.767073 CCCTTCCTCCGTACCCCC 60.767 72.222 0.00 0.00 0.00 5.40
579 582 3.039526 CCCCCTCCCCCTCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
580 583 2.612251 CCCCTCCCCCTCTCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
581 584 2.612251 CCCTCCCCCTCTCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
582 585 2.612251 CCTCCCCCTCTCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
583 586 2.328589 CCTCCCCCTCTCTCTCCCA 61.329 68.421 0.00 0.00 0.00 4.37
584 587 1.706575 CTCCCCCTCTCTCTCCCAA 59.293 63.158 0.00 0.00 0.00 4.12
585 588 0.689412 CTCCCCCTCTCTCTCCCAAC 60.689 65.000 0.00 0.00 0.00 3.77
586 589 2.060980 CCCCCTCTCTCTCCCAACG 61.061 68.421 0.00 0.00 0.00 4.10
587 590 2.726351 CCCCTCTCTCTCCCAACGC 61.726 68.421 0.00 0.00 0.00 4.84
588 591 2.726351 CCCTCTCTCTCCCAACGCC 61.726 68.421 0.00 0.00 0.00 5.68
589 592 2.726351 CCTCTCTCTCCCAACGCCC 61.726 68.421 0.00 0.00 0.00 6.13
590 593 3.068691 TCTCTCTCCCAACGCCCG 61.069 66.667 0.00 0.00 0.00 6.13
591 594 3.382832 CTCTCTCCCAACGCCCGT 61.383 66.667 0.00 0.00 0.00 5.28
592 595 3.358076 CTCTCTCCCAACGCCCGTC 62.358 68.421 0.00 0.00 0.00 4.79
593 596 4.452733 CTCTCCCAACGCCCGTCC 62.453 72.222 0.00 0.00 0.00 4.79
595 598 4.096003 CTCCCAACGCCCGTCCAT 62.096 66.667 0.00 0.00 0.00 3.41
596 599 4.090588 TCCCAACGCCCGTCCATC 62.091 66.667 0.00 0.00 0.00 3.51
597 600 4.096003 CCCAACGCCCGTCCATCT 62.096 66.667 0.00 0.00 0.00 2.90
598 601 2.511600 CCAACGCCCGTCCATCTC 60.512 66.667 0.00 0.00 0.00 2.75
599 602 2.579201 CAACGCCCGTCCATCTCT 59.421 61.111 0.00 0.00 0.00 3.10
600 603 1.519455 CAACGCCCGTCCATCTCTC 60.519 63.158 0.00 0.00 0.00 3.20
601 604 2.722201 AACGCCCGTCCATCTCTCC 61.722 63.158 0.00 0.00 0.00 3.71
602 605 4.271816 CGCCCGTCCATCTCTCCG 62.272 72.222 0.00 0.00 0.00 4.63
603 606 3.917760 GCCCGTCCATCTCTCCGG 61.918 72.222 0.00 0.00 40.12 5.14
604 607 3.917760 CCCGTCCATCTCTCCGGC 61.918 72.222 0.00 0.00 39.12 6.13
605 608 4.271816 CCGTCCATCTCTCCGGCG 62.272 72.222 0.00 0.00 33.20 6.46
606 609 3.209812 CGTCCATCTCTCCGGCGA 61.210 66.667 9.30 0.00 0.00 5.54
607 610 2.771639 CGTCCATCTCTCCGGCGAA 61.772 63.158 9.30 0.00 0.00 4.70
608 611 1.515954 GTCCATCTCTCCGGCGAAA 59.484 57.895 9.30 0.00 0.00 3.46
609 612 0.806492 GTCCATCTCTCCGGCGAAAC 60.806 60.000 9.30 0.00 0.00 2.78
610 613 1.521681 CCATCTCTCCGGCGAAACC 60.522 63.158 9.30 0.00 0.00 3.27
622 625 3.564027 GAAACCGATGGCCGCGAG 61.564 66.667 18.18 10.98 36.84 5.03
1312 1317 1.540363 CGTATGTCCCCCAATCCGAAG 60.540 57.143 0.00 0.00 0.00 3.79
1449 1454 7.965107 GTGGTTCTTAGAGCAATTTAATCACAG 59.035 37.037 0.00 0.00 0.00 3.66
1589 1595 1.068541 GGTTCTTCGTCCATTTGTGCC 60.069 52.381 0.00 0.00 0.00 5.01
1638 1646 4.010349 CTGTTGGGTATTGAGTTTCCTCC 58.990 47.826 0.00 0.00 36.86 4.30
1649 1657 4.870636 TGAGTTTCCTCCATGCCAATTAT 58.129 39.130 0.00 0.00 36.86 1.28
1759 1767 6.747280 GGTATTGTGCTTGTTAACTATGCTTG 59.253 38.462 7.22 0.00 0.00 4.01
1767 1775 4.941713 TGTTAACTATGCTTGGGGGAAAT 58.058 39.130 7.22 0.00 0.00 2.17
1778 1786 3.108847 TGGGGGAAATGGTGGATTTAC 57.891 47.619 0.00 0.00 34.18 2.01
1831 1839 0.242017 GTTTGCAGGTGATCAGTGGC 59.758 55.000 0.00 0.00 0.00 5.01
1962 1970 0.322816 TCCACTCTTCTGCCATTGCC 60.323 55.000 0.00 0.00 36.33 4.52
2210 2219 2.746142 GCCACTGATACATGCTGCCTTA 60.746 50.000 0.00 0.00 0.00 2.69
2587 2596 9.587772 GTAGAATGTATGTTGTCAGTGAACTAT 57.412 33.333 0.00 0.00 0.00 2.12
2591 2600 9.719355 AATGTATGTTGTCAGTGAACTATGTTA 57.281 29.630 0.00 0.00 0.00 2.41
2777 2786 8.961634 TGATGACTTATCTATCATAGTACTGCC 58.038 37.037 5.39 0.00 35.67 4.85
3590 3628 1.211457 CATAGCTCCACTCCTTTGGCT 59.789 52.381 0.00 0.00 36.48 4.75
3735 3774 0.625849 TCTGGGGCCTCTTTGATTCC 59.374 55.000 3.07 0.00 0.00 3.01
3751 3790 7.508977 TCTTTGATTCCCAGGATTTGTAAAACT 59.491 33.333 0.00 0.00 0.00 2.66
3901 3940 9.110502 GAAATCTAGTACAAATGAACCTAAGGG 57.889 37.037 0.00 0.00 38.88 3.95
3973 4012 7.542025 AGAATACCTTTGAATCAAGCATGTTC 58.458 34.615 0.00 0.82 0.00 3.18
3991 4030 5.621197 TGTTCGTAAGCACATTTAAGCAT 57.379 34.783 0.00 0.00 38.95 3.79
3992 4031 5.389778 TGTTCGTAAGCACATTTAAGCATG 58.610 37.500 0.00 0.00 38.95 4.06
3993 4032 5.049060 TGTTCGTAAGCACATTTAAGCATGT 60.049 36.000 0.00 0.00 38.95 3.21
3994 4033 5.216566 TCGTAAGCACATTTAAGCATGTC 57.783 39.130 0.00 0.00 35.03 3.06
3995 4034 4.693095 TCGTAAGCACATTTAAGCATGTCA 59.307 37.500 0.00 0.00 35.03 3.58
3996 4035 5.353956 TCGTAAGCACATTTAAGCATGTCAT 59.646 36.000 0.00 0.00 35.03 3.06
3997 4036 5.678483 CGTAAGCACATTTAAGCATGTCATC 59.322 40.000 0.00 0.00 35.03 2.92
3998 4037 5.648178 AAGCACATTTAAGCATGTCATCA 57.352 34.783 0.00 0.00 35.03 3.07
3999 4038 5.847111 AGCACATTTAAGCATGTCATCAT 57.153 34.783 0.00 0.00 35.03 2.45
4000 4039 6.216801 AGCACATTTAAGCATGTCATCATT 57.783 33.333 0.00 0.00 35.03 2.57
4001 4040 7.337480 AGCACATTTAAGCATGTCATCATTA 57.663 32.000 0.00 0.00 35.03 1.90
4002 4041 7.423199 AGCACATTTAAGCATGTCATCATTAG 58.577 34.615 0.00 0.00 35.03 1.73
4003 4042 7.067859 AGCACATTTAAGCATGTCATCATTAGT 59.932 33.333 0.00 0.00 35.03 2.24
4004 4043 7.166970 GCACATTTAAGCATGTCATCATTAGTG 59.833 37.037 0.00 0.00 35.03 2.74
4005 4044 7.166970 CACATTTAAGCATGTCATCATTAGTGC 59.833 37.037 0.00 0.00 35.03 4.40
4006 4045 6.756299 TTTAAGCATGTCATCATTAGTGCA 57.244 33.333 0.00 0.00 31.15 4.57
4007 4046 6.756299 TTAAGCATGTCATCATTAGTGCAA 57.244 33.333 0.00 0.00 31.15 4.08
4008 4047 5.847111 AAGCATGTCATCATTAGTGCAAT 57.153 34.783 0.00 0.00 31.15 3.56
4009 4048 6.947644 AAGCATGTCATCATTAGTGCAATA 57.052 33.333 0.00 0.00 31.15 1.90
4010 4049 7.520451 AAGCATGTCATCATTAGTGCAATAT 57.480 32.000 0.00 0.00 31.15 1.28
4011 4050 8.625786 AAGCATGTCATCATTAGTGCAATATA 57.374 30.769 0.00 0.00 31.15 0.86
4012 4051 8.625786 AGCATGTCATCATTAGTGCAATATAA 57.374 30.769 0.00 0.00 31.15 0.98
4013 4052 9.070179 AGCATGTCATCATTAGTGCAATATAAA 57.930 29.630 0.00 0.00 31.15 1.40
4014 4053 9.681692 GCATGTCATCATTAGTGCAATATAAAA 57.318 29.630 0.00 0.00 31.15 1.52
4048 4087 7.820578 GATGAGAATCCTCCAAAATTCATCT 57.179 36.000 4.41 0.00 37.66 2.90
4049 4088 8.915057 GATGAGAATCCTCCAAAATTCATCTA 57.085 34.615 4.41 0.00 37.66 1.98
4050 4089 8.921353 ATGAGAATCCTCCAAAATTCATCTAG 57.079 34.615 0.00 0.00 38.66 2.43
4051 4090 8.094284 TGAGAATCCTCCAAAATTCATCTAGA 57.906 34.615 0.00 0.00 38.66 2.43
4052 4091 8.551440 TGAGAATCCTCCAAAATTCATCTAGAA 58.449 33.333 0.00 0.00 38.44 2.10
4053 4092 9.571816 GAGAATCCTCCAAAATTCATCTAGAAT 57.428 33.333 0.00 0.00 39.77 2.40
4056 4095 9.579932 AATCCTCCAAAATTCATCTAGAATACC 57.420 33.333 0.00 0.00 46.09 2.73
4057 4096 8.337118 TCCTCCAAAATTCATCTAGAATACCT 57.663 34.615 0.00 0.00 46.09 3.08
4058 4097 8.781951 TCCTCCAAAATTCATCTAGAATACCTT 58.218 33.333 0.00 0.00 46.09 3.50
4059 4098 9.413734 CCTCCAAAATTCATCTAGAATACCTTT 57.586 33.333 0.00 0.00 46.09 3.11
4061 4100 9.973661 TCCAAAATTCATCTAGAATACCTTTGA 57.026 29.630 15.87 4.35 46.09 2.69
4072 4111 9.520515 TCTAGAATACCTTTGAATCAAGCTTTT 57.479 29.630 0.00 0.00 0.00 2.27
4101 4140 4.335416 TCCTTTTCTTACCTGGCTTCATG 58.665 43.478 0.00 0.00 0.00 3.07
4219 4259 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4221 4261 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
4230 4280 3.005261 TCTCTCTCTCTCTTTGTGTGTGC 59.995 47.826 0.00 0.00 0.00 4.57
4421 4471 2.699954 CTCCAGCGACCTAACAAACAT 58.300 47.619 0.00 0.00 0.00 2.71
4611 4662 0.396139 TGATTTGATGCTGGAGCCCC 60.396 55.000 0.00 0.00 41.18 5.80
4628 4679 2.685100 CCCCTACAGTTTCGAAGTGAC 58.315 52.381 14.59 3.75 35.76 3.67
4733 4784 3.806941 CCGGATGGGTGTGATTGAT 57.193 52.632 0.00 0.00 0.00 2.57
4820 4871 6.343226 TGCAGTTTCAACAATTTAGTTTGC 57.657 33.333 0.00 0.00 33.24 3.68
4832 4883 6.547510 ACAATTTAGTTTGCTGGTCTCTCTTT 59.452 34.615 0.00 0.00 0.00 2.52
4863 4914 5.010922 TGTGAGCATTGCCAGAATTAACTTT 59.989 36.000 4.70 0.00 0.00 2.66
4864 4915 5.346822 GTGAGCATTGCCAGAATTAACTTTG 59.653 40.000 4.70 0.00 0.00 2.77
4865 4916 4.248058 AGCATTGCCAGAATTAACTTTGC 58.752 39.130 4.70 0.00 0.00 3.68
4866 4917 4.020839 AGCATTGCCAGAATTAACTTTGCT 60.021 37.500 4.70 0.00 32.27 3.91
4892 4943 6.877611 TTTTATGAGAGTTCTTTGGGTCAC 57.122 37.500 0.00 0.00 0.00 3.67
4898 4949 4.742012 AGAGTTCTTTGGGTCACTCTCTA 58.258 43.478 0.00 0.00 41.85 2.43
4931 4982 2.970639 CATCTCCACCGTGGACGT 59.029 61.111 16.73 5.20 42.67 4.34
4951 5002 3.956233 GTTTAAACGGACACCCTCAAAC 58.044 45.455 1.89 0.00 0.00 2.93
4978 5042 1.135527 TGACACGTTAAGGCTATCCCG 59.864 52.381 0.00 0.00 39.21 5.14
4998 5062 5.360144 TCCCGGTTTAAACATTTCAAACTCA 59.640 36.000 19.57 0.00 33.62 3.41
5011 5075 9.037737 ACATTTCAAACTCACAAATTTGATGAG 57.962 29.630 29.31 29.31 42.72 2.90
5153 5237 3.774282 CATGAACACCATGTTTTTGCG 57.226 42.857 0.00 0.00 45.83 4.85
5187 5271 0.621571 ACCTGAGCCAGCCCATCTAA 60.622 55.000 0.00 0.00 0.00 2.10
5235 5323 0.179051 CTGCTCTTGCTCATCCTCCC 60.179 60.000 0.00 0.00 40.48 4.30
5264 5354 2.124570 CATCGGGGCCTCCTTGTG 60.125 66.667 0.84 0.00 0.00 3.33
5291 5381 4.475135 GGCCGCCTCTTCCCAGTC 62.475 72.222 0.71 0.00 0.00 3.51
5378 5523 7.498570 GCAATTGGAATGAGAAGACTTAGAGAT 59.501 37.037 7.72 0.00 0.00 2.75
5379 5524 9.393512 CAATTGGAATGAGAAGACTTAGAGATT 57.606 33.333 0.00 0.00 0.00 2.40
5384 5529 8.037758 GGAATGAGAAGACTTAGAGATTGTTCA 58.962 37.037 0.00 0.00 0.00 3.18
5388 5533 9.078990 TGAGAAGACTTAGAGATTGTTCAGTAA 57.921 33.333 0.00 0.00 0.00 2.24
5393 5538 8.254508 AGACTTAGAGATTGTTCAGTAATCCAC 58.745 37.037 0.00 0.00 35.62 4.02
5394 5539 7.331791 ACTTAGAGATTGTTCAGTAATCCACC 58.668 38.462 0.00 0.00 35.62 4.61
5395 5540 5.762179 AGAGATTGTTCAGTAATCCACCA 57.238 39.130 0.00 0.00 35.62 4.17
5396 5541 5.738909 AGAGATTGTTCAGTAATCCACCAG 58.261 41.667 0.00 0.00 35.62 4.00
5397 5542 4.265073 AGATTGTTCAGTAATCCACCAGC 58.735 43.478 0.00 0.00 35.62 4.85
5398 5543 3.788227 TTGTTCAGTAATCCACCAGCT 57.212 42.857 0.00 0.00 0.00 4.24
5399 5544 3.334583 TGTTCAGTAATCCACCAGCTC 57.665 47.619 0.00 0.00 0.00 4.09
5400 5545 2.027192 TGTTCAGTAATCCACCAGCTCC 60.027 50.000 0.00 0.00 0.00 4.70
5401 5546 1.951209 TCAGTAATCCACCAGCTCCA 58.049 50.000 0.00 0.00 0.00 3.86
5402 5547 1.555075 TCAGTAATCCACCAGCTCCAC 59.445 52.381 0.00 0.00 0.00 4.02
5403 5548 0.537188 AGTAATCCACCAGCTCCACG 59.463 55.000 0.00 0.00 0.00 4.94
5404 5549 0.535335 GTAATCCACCAGCTCCACGA 59.465 55.000 0.00 0.00 0.00 4.35
5405 5550 1.066430 GTAATCCACCAGCTCCACGAA 60.066 52.381 0.00 0.00 0.00 3.85
5406 5551 0.400213 AATCCACCAGCTCCACGAAA 59.600 50.000 0.00 0.00 0.00 3.46
5407 5552 0.620556 ATCCACCAGCTCCACGAAAT 59.379 50.000 0.00 0.00 0.00 2.17
5408 5553 0.036388 TCCACCAGCTCCACGAAATC 60.036 55.000 0.00 0.00 0.00 2.17
5409 5554 1.026718 CCACCAGCTCCACGAAATCC 61.027 60.000 0.00 0.00 0.00 3.01
5410 5555 0.036010 CACCAGCTCCACGAAATCCT 60.036 55.000 0.00 0.00 0.00 3.24
5411 5556 0.250513 ACCAGCTCCACGAAATCCTC 59.749 55.000 0.00 0.00 0.00 3.71
5412 5557 0.539051 CCAGCTCCACGAAATCCTCT 59.461 55.000 0.00 0.00 0.00 3.69
5413 5558 1.065854 CCAGCTCCACGAAATCCTCTT 60.066 52.381 0.00 0.00 0.00 2.85
5414 5559 2.616510 CCAGCTCCACGAAATCCTCTTT 60.617 50.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.428097 GATACTTTTTGAATGCTTCCAAATTCT 57.572 29.630 0.00 0.00 34.52 2.40
1 2 9.428097 AGATACTTTTTGAATGCTTCCAAATTC 57.572 29.630 0.00 0.00 33.00 2.17
2 3 9.783081 AAGATACTTTTTGAATGCTTCCAAATT 57.217 25.926 0.00 0.00 33.00 1.82
4 5 9.691362 GTAAGATACTTTTTGAATGCTTCCAAA 57.309 29.630 0.00 0.00 0.00 3.28
5 6 8.855110 TGTAAGATACTTTTTGAATGCTTCCAA 58.145 29.630 0.00 0.00 0.00 3.53
6 7 8.402798 TGTAAGATACTTTTTGAATGCTTCCA 57.597 30.769 0.00 0.00 0.00 3.53
7 8 8.730680 TCTGTAAGATACTTTTTGAATGCTTCC 58.269 33.333 0.00 0.00 38.67 3.46
41 42 9.844257 TTTTGGGAAGAAAAACATCATTTACAT 57.156 25.926 0.00 0.00 0.00 2.29
42 43 9.844257 ATTTTGGGAAGAAAAACATCATTTACA 57.156 25.926 0.00 0.00 29.78 2.41
45 46 9.059260 CAGATTTTGGGAAGAAAAACATCATTT 57.941 29.630 0.00 0.00 29.78 2.32
46 47 7.662669 CCAGATTTTGGGAAGAAAAACATCATT 59.337 33.333 0.00 0.00 43.75 2.57
47 48 7.163441 CCAGATTTTGGGAAGAAAAACATCAT 58.837 34.615 0.00 0.00 43.75 2.45
48 49 6.523840 CCAGATTTTGGGAAGAAAAACATCA 58.476 36.000 0.00 0.00 43.75 3.07
49 50 6.963739 TGCCAGATTTTGGGAAGAAAAACATC 60.964 38.462 0.00 0.00 45.32 3.06
50 51 5.163216 TGCCAGATTTTGGGAAGAAAAACAT 60.163 36.000 0.00 0.00 45.32 2.71
51 52 4.163078 TGCCAGATTTTGGGAAGAAAAACA 59.837 37.500 0.00 0.00 45.32 2.83
52 53 4.702831 TGCCAGATTTTGGGAAGAAAAAC 58.297 39.130 0.00 0.00 45.32 2.43
63 64 7.910441 AAAAATCAACCTATGCCAGATTTTG 57.090 32.000 10.92 0.00 43.90 2.44
85 86 3.421844 GAGGCTAAGCTCCAAGGAAAAA 58.578 45.455 0.00 0.00 0.00 1.94
86 87 2.290960 GGAGGCTAAGCTCCAAGGAAAA 60.291 50.000 0.00 0.00 39.45 2.29
87 88 1.282157 GGAGGCTAAGCTCCAAGGAAA 59.718 52.381 0.00 0.00 39.45 3.13
88 89 0.912486 GGAGGCTAAGCTCCAAGGAA 59.088 55.000 0.00 0.00 39.45 3.36
89 90 0.252696 TGGAGGCTAAGCTCCAAGGA 60.253 55.000 6.94 0.00 45.68 3.36
90 91 2.300996 TGGAGGCTAAGCTCCAAGG 58.699 57.895 6.94 0.00 45.68 3.61
93 94 1.995626 GGGTGGAGGCTAAGCTCCA 60.996 63.158 5.42 5.42 46.39 3.86
94 95 1.690985 AGGGTGGAGGCTAAGCTCC 60.691 63.158 0.00 0.00 40.05 4.70
95 96 0.978146 TGAGGGTGGAGGCTAAGCTC 60.978 60.000 0.00 0.00 0.00 4.09
96 97 0.327000 ATGAGGGTGGAGGCTAAGCT 60.327 55.000 0.00 0.00 0.00 3.74
97 98 0.179034 CATGAGGGTGGAGGCTAAGC 60.179 60.000 0.00 0.00 0.00 3.09
98 99 1.207791 ACATGAGGGTGGAGGCTAAG 58.792 55.000 0.00 0.00 0.00 2.18
99 100 2.504175 GTTACATGAGGGTGGAGGCTAA 59.496 50.000 0.00 0.00 0.00 3.09
100 101 2.116238 GTTACATGAGGGTGGAGGCTA 58.884 52.381 0.00 0.00 0.00 3.93
101 102 0.912486 GTTACATGAGGGTGGAGGCT 59.088 55.000 0.00 0.00 0.00 4.58
102 103 0.618458 TGTTACATGAGGGTGGAGGC 59.382 55.000 0.00 0.00 0.00 4.70
103 104 4.982241 ATATGTTACATGAGGGTGGAGG 57.018 45.455 8.26 0.00 0.00 4.30
104 105 8.924511 ATAAAATATGTTACATGAGGGTGGAG 57.075 34.615 8.26 0.00 0.00 3.86
105 106 9.707957 AAATAAAATATGTTACATGAGGGTGGA 57.292 29.630 8.26 0.00 0.00 4.02
133 134 8.237267 GCGTGCTTGCTCCTAAATATTATAAAT 58.763 33.333 0.00 0.00 0.00 1.40
134 135 7.444183 AGCGTGCTTGCTCCTAAATATTATAAA 59.556 33.333 0.00 0.00 42.95 1.40
135 136 6.934645 AGCGTGCTTGCTCCTAAATATTATAA 59.065 34.615 0.00 0.00 42.95 0.98
136 137 6.464222 AGCGTGCTTGCTCCTAAATATTATA 58.536 36.000 0.00 0.00 42.95 0.98
137 138 5.308825 AGCGTGCTTGCTCCTAAATATTAT 58.691 37.500 0.00 0.00 42.95 1.28
138 139 4.703897 AGCGTGCTTGCTCCTAAATATTA 58.296 39.130 0.00 0.00 42.95 0.98
139 140 3.545703 AGCGTGCTTGCTCCTAAATATT 58.454 40.909 0.00 0.00 42.95 1.28
140 141 3.199880 AGCGTGCTTGCTCCTAAATAT 57.800 42.857 0.00 0.00 42.95 1.28
141 142 2.677836 CAAGCGTGCTTGCTCCTAAATA 59.322 45.455 20.36 0.00 46.60 1.40
142 143 1.470098 CAAGCGTGCTTGCTCCTAAAT 59.530 47.619 20.36 0.00 46.60 1.40
143 144 0.874390 CAAGCGTGCTTGCTCCTAAA 59.126 50.000 20.36 0.00 46.60 1.85
144 145 2.543578 CAAGCGTGCTTGCTCCTAA 58.456 52.632 20.36 0.00 46.60 2.69
145 146 4.284123 CAAGCGTGCTTGCTCCTA 57.716 55.556 20.36 0.00 46.60 2.94
154 155 1.137404 CACTTATGCCCAAGCGTGC 59.863 57.895 0.00 0.00 44.31 5.34
157 158 1.097547 CCCTCACTTATGCCCAAGCG 61.098 60.000 0.00 0.00 44.31 4.68
227 228 8.761497 CGTCCGACTGTTTTTCACATATATAAT 58.239 33.333 0.00 0.00 33.76 1.28
238 239 4.519191 TGTAAACGTCCGACTGTTTTTC 57.481 40.909 19.38 15.05 39.00 2.29
252 254 3.855379 TCCACGATCTTCGATTGTAAACG 59.145 43.478 3.62 0.00 43.74 3.60
368 371 5.300286 CACAGATTTGAGGGAAAAGTCAAGT 59.700 40.000 0.00 0.00 34.25 3.16
369 372 5.766222 CACAGATTTGAGGGAAAAGTCAAG 58.234 41.667 0.00 0.00 34.25 3.02
370 373 4.037923 GCACAGATTTGAGGGAAAAGTCAA 59.962 41.667 0.00 0.00 0.00 3.18
371 374 3.569701 GCACAGATTTGAGGGAAAAGTCA 59.430 43.478 0.00 0.00 0.00 3.41
372 375 3.365364 CGCACAGATTTGAGGGAAAAGTC 60.365 47.826 0.00 0.00 31.09 3.01
373 376 2.554032 CGCACAGATTTGAGGGAAAAGT 59.446 45.455 0.00 0.00 31.09 2.66
374 377 2.095059 CCGCACAGATTTGAGGGAAAAG 60.095 50.000 0.00 0.00 31.09 2.27
375 378 1.885887 CCGCACAGATTTGAGGGAAAA 59.114 47.619 0.00 0.00 31.09 2.29
376 379 1.533625 CCGCACAGATTTGAGGGAAA 58.466 50.000 0.00 0.00 31.09 3.13
377 380 0.322456 CCCGCACAGATTTGAGGGAA 60.322 55.000 6.07 0.00 38.42 3.97
378 381 1.299648 CCCGCACAGATTTGAGGGA 59.700 57.895 6.07 0.00 38.42 4.20
379 382 1.002134 ACCCGCACAGATTTGAGGG 60.002 57.895 10.09 10.09 40.35 4.30
380 383 0.321564 TGACCCGCACAGATTTGAGG 60.322 55.000 0.00 0.00 0.00 3.86
381 384 1.522668 TTGACCCGCACAGATTTGAG 58.477 50.000 0.00 0.00 0.00 3.02
382 385 1.974265 TTTGACCCGCACAGATTTGA 58.026 45.000 0.00 0.00 0.00 2.69
383 386 2.791383 TTTTGACCCGCACAGATTTG 57.209 45.000 0.00 0.00 0.00 2.32
384 387 2.955660 TCTTTTTGACCCGCACAGATTT 59.044 40.909 0.00 0.00 0.00 2.17
385 388 2.554032 CTCTTTTTGACCCGCACAGATT 59.446 45.455 0.00 0.00 0.00 2.40
386 389 2.154462 CTCTTTTTGACCCGCACAGAT 58.846 47.619 0.00 0.00 0.00 2.90
387 390 1.593196 CTCTTTTTGACCCGCACAGA 58.407 50.000 0.00 0.00 0.00 3.41
388 391 0.593128 CCTCTTTTTGACCCGCACAG 59.407 55.000 0.00 0.00 0.00 3.66
389 392 1.452145 GCCTCTTTTTGACCCGCACA 61.452 55.000 0.00 0.00 0.00 4.57
390 393 1.172812 AGCCTCTTTTTGACCCGCAC 61.173 55.000 0.00 0.00 0.00 5.34
391 394 0.889186 GAGCCTCTTTTTGACCCGCA 60.889 55.000 0.00 0.00 0.00 5.69
392 395 1.876664 GAGCCTCTTTTTGACCCGC 59.123 57.895 0.00 0.00 0.00 6.13
393 396 1.912371 GCGAGCCTCTTTTTGACCCG 61.912 60.000 0.00 0.00 0.00 5.28
394 397 0.606673 AGCGAGCCTCTTTTTGACCC 60.607 55.000 0.00 0.00 0.00 4.46
395 398 0.799393 GAGCGAGCCTCTTTTTGACC 59.201 55.000 0.00 0.00 37.60 4.02
396 399 1.195674 GTGAGCGAGCCTCTTTTTGAC 59.804 52.381 0.00 0.00 41.35 3.18
397 400 1.512926 GTGAGCGAGCCTCTTTTTGA 58.487 50.000 0.00 0.00 41.35 2.69
398 401 0.519077 GGTGAGCGAGCCTCTTTTTG 59.481 55.000 0.00 0.00 41.35 2.44
399 402 0.606673 GGGTGAGCGAGCCTCTTTTT 60.607 55.000 0.00 0.00 41.35 1.94
400 403 1.003233 GGGTGAGCGAGCCTCTTTT 60.003 57.895 0.00 0.00 41.35 2.27
401 404 2.665603 GGGTGAGCGAGCCTCTTT 59.334 61.111 0.00 0.00 41.35 2.52
402 405 3.394836 GGGGTGAGCGAGCCTCTT 61.395 66.667 6.92 0.00 42.49 2.85
403 406 4.390556 AGGGGTGAGCGAGCCTCT 62.391 66.667 6.92 0.00 42.49 3.69
404 407 3.844090 GAGGGGTGAGCGAGCCTC 61.844 72.222 6.92 0.00 42.49 4.70
407 410 2.781595 TTTTCGAGGGGTGAGCGAGC 62.782 60.000 0.00 0.00 0.00 5.03
408 411 0.320421 TTTTTCGAGGGGTGAGCGAG 60.320 55.000 0.00 0.00 0.00 5.03
409 412 1.749665 TTTTTCGAGGGGTGAGCGA 59.250 52.632 0.00 0.00 0.00 4.93
410 413 4.371975 TTTTTCGAGGGGTGAGCG 57.628 55.556 0.00 0.00 0.00 5.03
428 431 1.507141 CGTGTCCAGCGAGCCTTTTT 61.507 55.000 0.00 0.00 0.00 1.94
429 432 1.961277 CGTGTCCAGCGAGCCTTTT 60.961 57.895 0.00 0.00 0.00 2.27
430 433 1.812686 TACGTGTCCAGCGAGCCTTT 61.813 55.000 0.00 0.00 0.00 3.11
431 434 1.812686 TTACGTGTCCAGCGAGCCTT 61.813 55.000 0.00 0.00 0.00 4.35
432 435 1.812686 TTTACGTGTCCAGCGAGCCT 61.813 55.000 0.00 0.00 0.00 4.58
433 436 1.352156 CTTTACGTGTCCAGCGAGCC 61.352 60.000 0.00 0.00 0.00 4.70
434 437 1.956620 GCTTTACGTGTCCAGCGAGC 61.957 60.000 0.00 0.00 0.00 5.03
435 438 2.070861 GCTTTACGTGTCCAGCGAG 58.929 57.895 0.00 0.00 0.00 5.03
436 439 4.255126 GCTTTACGTGTCCAGCGA 57.745 55.556 0.00 0.00 0.00 4.93
438 441 2.388232 CCCGCTTTACGTGTCCAGC 61.388 63.158 0.00 0.00 41.42 4.85
439 442 2.388232 GCCCGCTTTACGTGTCCAG 61.388 63.158 0.00 0.00 41.42 3.86
440 443 2.357760 GCCCGCTTTACGTGTCCA 60.358 61.111 0.00 0.00 41.42 4.02
441 444 3.122971 GGCCCGCTTTACGTGTCC 61.123 66.667 0.00 0.00 41.42 4.02
442 445 3.122971 GGGCCCGCTTTACGTGTC 61.123 66.667 5.69 0.00 41.42 3.67
466 469 5.022021 GCGCGCATAGTTTATGGATTTATC 58.978 41.667 29.10 0.00 36.68 1.75
467 470 4.142687 GGCGCGCATAGTTTATGGATTTAT 60.143 41.667 34.42 0.00 36.68 1.40
468 471 3.187637 GGCGCGCATAGTTTATGGATTTA 59.812 43.478 34.42 0.00 36.68 1.40
469 472 2.031157 GGCGCGCATAGTTTATGGATTT 60.031 45.455 34.42 0.00 36.68 2.17
470 473 1.535462 GGCGCGCATAGTTTATGGATT 59.465 47.619 34.42 0.00 36.68 3.01
471 474 1.156736 GGCGCGCATAGTTTATGGAT 58.843 50.000 34.42 0.00 36.68 3.41
472 475 0.882927 GGGCGCGCATAGTTTATGGA 60.883 55.000 34.42 0.00 36.68 3.41
473 476 1.163420 TGGGCGCGCATAGTTTATGG 61.163 55.000 34.42 0.00 36.68 2.74
474 477 0.041312 GTGGGCGCGCATAGTTTATG 60.041 55.000 34.42 0.00 39.18 1.90
475 478 1.164041 GGTGGGCGCGCATAGTTTAT 61.164 55.000 34.42 0.00 0.00 1.40
476 479 1.816259 GGTGGGCGCGCATAGTTTA 60.816 57.895 34.42 7.23 0.00 2.01
477 480 3.131478 GGTGGGCGCGCATAGTTT 61.131 61.111 34.42 0.00 0.00 2.66
487 490 3.995506 GAGTGGAATGGGGTGGGCG 62.996 68.421 0.00 0.00 0.00 6.13
488 491 2.043953 GAGTGGAATGGGGTGGGC 60.044 66.667 0.00 0.00 0.00 5.36
489 492 1.583784 ATGGAGTGGAATGGGGTGGG 61.584 60.000 0.00 0.00 0.00 4.61
490 493 0.336048 AATGGAGTGGAATGGGGTGG 59.664 55.000 0.00 0.00 0.00 4.61
491 494 2.236489 AAATGGAGTGGAATGGGGTG 57.764 50.000 0.00 0.00 0.00 4.61
492 495 2.559705 GGAAAATGGAGTGGAATGGGGT 60.560 50.000 0.00 0.00 0.00 4.95
493 496 2.110578 GGAAAATGGAGTGGAATGGGG 58.889 52.381 0.00 0.00 0.00 4.96
494 497 3.026694 GAGGAAAATGGAGTGGAATGGG 58.973 50.000 0.00 0.00 0.00 4.00
495 498 3.026694 GGAGGAAAATGGAGTGGAATGG 58.973 50.000 0.00 0.00 0.00 3.16
496 499 3.950395 GAGGAGGAAAATGGAGTGGAATG 59.050 47.826 0.00 0.00 0.00 2.67
497 500 3.053320 GGAGGAGGAAAATGGAGTGGAAT 60.053 47.826 0.00 0.00 0.00 3.01
498 501 2.308866 GGAGGAGGAAAATGGAGTGGAA 59.691 50.000 0.00 0.00 0.00 3.53
499 502 1.916181 GGAGGAGGAAAATGGAGTGGA 59.084 52.381 0.00 0.00 0.00 4.02
500 503 1.407437 CGGAGGAGGAAAATGGAGTGG 60.407 57.143 0.00 0.00 0.00 4.00
501 504 2.014068 GCGGAGGAGGAAAATGGAGTG 61.014 57.143 0.00 0.00 0.00 3.51
502 505 0.253327 GCGGAGGAGGAAAATGGAGT 59.747 55.000 0.00 0.00 0.00 3.85
503 506 0.543749 AGCGGAGGAGGAAAATGGAG 59.456 55.000 0.00 0.00 0.00 3.86
504 507 0.991920 AAGCGGAGGAGGAAAATGGA 59.008 50.000 0.00 0.00 0.00 3.41
505 508 1.383523 GAAGCGGAGGAGGAAAATGG 58.616 55.000 0.00 0.00 0.00 3.16
506 509 1.009829 CGAAGCGGAGGAGGAAAATG 58.990 55.000 0.00 0.00 0.00 2.32
507 510 3.460648 CGAAGCGGAGGAGGAAAAT 57.539 52.632 0.00 0.00 0.00 1.82
521 524 0.109132 GGCAAATGTTCCAGGCGAAG 60.109 55.000 0.00 0.00 0.00 3.79
522 525 0.539438 AGGCAAATGTTCCAGGCGAA 60.539 50.000 0.00 0.00 0.00 4.70
523 526 0.960364 GAGGCAAATGTTCCAGGCGA 60.960 55.000 0.00 0.00 0.00 5.54
524 527 0.962356 AGAGGCAAATGTTCCAGGCG 60.962 55.000 0.00 0.00 0.00 5.52
525 528 1.203287 GAAGAGGCAAATGTTCCAGGC 59.797 52.381 0.00 0.00 0.00 4.85
526 529 1.821136 GGAAGAGGCAAATGTTCCAGG 59.179 52.381 6.80 0.00 41.22 4.45
527 530 2.751806 GAGGAAGAGGCAAATGTTCCAG 59.248 50.000 12.34 0.00 43.40 3.86
528 531 2.555227 GGAGGAAGAGGCAAATGTTCCA 60.555 50.000 12.34 0.00 43.40 3.53
529 532 2.095461 GGAGGAAGAGGCAAATGTTCC 58.905 52.381 4.20 4.20 41.74 3.62
530 533 2.095461 GGGAGGAAGAGGCAAATGTTC 58.905 52.381 0.00 0.00 0.00 3.18
531 534 1.713078 AGGGAGGAAGAGGCAAATGTT 59.287 47.619 0.00 0.00 0.00 2.71
532 535 1.376649 AGGGAGGAAGAGGCAAATGT 58.623 50.000 0.00 0.00 0.00 2.71
533 536 2.373224 GAAGGGAGGAAGAGGCAAATG 58.627 52.381 0.00 0.00 0.00 2.32
534 537 1.286257 GGAAGGGAGGAAGAGGCAAAT 59.714 52.381 0.00 0.00 0.00 2.32
535 538 0.698818 GGAAGGGAGGAAGAGGCAAA 59.301 55.000 0.00 0.00 0.00 3.68
536 539 0.178861 AGGAAGGGAGGAAGAGGCAA 60.179 55.000 0.00 0.00 0.00 4.52
537 540 0.618968 GAGGAAGGGAGGAAGAGGCA 60.619 60.000 0.00 0.00 0.00 4.75
538 541 1.341913 GGAGGAAGGGAGGAAGAGGC 61.342 65.000 0.00 0.00 0.00 4.70
539 542 1.045911 CGGAGGAAGGGAGGAAGAGG 61.046 65.000 0.00 0.00 0.00 3.69
540 543 0.324830 ACGGAGGAAGGGAGGAAGAG 60.325 60.000 0.00 0.00 0.00 2.85
541 544 1.005228 TACGGAGGAAGGGAGGAAGA 58.995 55.000 0.00 0.00 0.00 2.87
542 545 1.112950 GTACGGAGGAAGGGAGGAAG 58.887 60.000 0.00 0.00 0.00 3.46
543 546 0.325016 GGTACGGAGGAAGGGAGGAA 60.325 60.000 0.00 0.00 0.00 3.36
544 547 1.309006 GGTACGGAGGAAGGGAGGA 59.691 63.158 0.00 0.00 0.00 3.71
545 548 1.761271 GGGTACGGAGGAAGGGAGG 60.761 68.421 0.00 0.00 0.00 4.30
546 549 1.761271 GGGGTACGGAGGAAGGGAG 60.761 68.421 0.00 0.00 0.00 4.30
547 550 2.365764 GGGGTACGGAGGAAGGGA 59.634 66.667 0.00 0.00 0.00 4.20
548 551 2.767073 GGGGGTACGGAGGAAGGG 60.767 72.222 0.00 0.00 0.00 3.95
562 565 3.039526 AGAGAGAGGGGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
563 566 2.612251 GAGAGAGAGGGGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
564 567 2.612251 GGAGAGAGAGGGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
565 568 1.891296 TTGGGAGAGAGAGGGGGAGG 61.891 65.000 0.00 0.00 0.00 4.30
566 569 0.689412 GTTGGGAGAGAGAGGGGGAG 60.689 65.000 0.00 0.00 0.00 4.30
567 570 1.392534 GTTGGGAGAGAGAGGGGGA 59.607 63.158 0.00 0.00 0.00 4.81
568 571 2.060980 CGTTGGGAGAGAGAGGGGG 61.061 68.421 0.00 0.00 0.00 5.40
569 572 2.726351 GCGTTGGGAGAGAGAGGGG 61.726 68.421 0.00 0.00 0.00 4.79
570 573 2.726351 GGCGTTGGGAGAGAGAGGG 61.726 68.421 0.00 0.00 0.00 4.30
571 574 2.726351 GGGCGTTGGGAGAGAGAGG 61.726 68.421 0.00 0.00 0.00 3.69
572 575 2.896443 GGGCGTTGGGAGAGAGAG 59.104 66.667 0.00 0.00 0.00 3.20
573 576 3.068691 CGGGCGTTGGGAGAGAGA 61.069 66.667 0.00 0.00 0.00 3.10
574 577 3.358076 GACGGGCGTTGGGAGAGAG 62.358 68.421 0.00 0.00 0.00 3.20
575 578 3.379445 GACGGGCGTTGGGAGAGA 61.379 66.667 0.00 0.00 0.00 3.10
576 579 4.452733 GGACGGGCGTTGGGAGAG 62.453 72.222 0.00 0.00 0.00 3.20
578 581 4.096003 ATGGACGGGCGTTGGGAG 62.096 66.667 0.00 0.00 0.00 4.30
579 582 4.090588 GATGGACGGGCGTTGGGA 62.091 66.667 0.00 0.00 0.00 4.37
580 583 4.096003 AGATGGACGGGCGTTGGG 62.096 66.667 0.00 0.00 0.00 4.12
581 584 2.511600 GAGATGGACGGGCGTTGG 60.512 66.667 0.00 0.00 0.00 3.77
582 585 1.519455 GAGAGATGGACGGGCGTTG 60.519 63.158 0.00 0.00 0.00 4.10
583 586 2.722201 GGAGAGATGGACGGGCGTT 61.722 63.158 0.00 0.00 0.00 4.84
584 587 3.148279 GGAGAGATGGACGGGCGT 61.148 66.667 0.00 0.00 0.00 5.68
585 588 4.271816 CGGAGAGATGGACGGGCG 62.272 72.222 0.00 0.00 0.00 6.13
586 589 3.917760 CCGGAGAGATGGACGGGC 61.918 72.222 0.00 0.00 42.48 6.13
587 590 3.917760 GCCGGAGAGATGGACGGG 61.918 72.222 5.05 0.00 46.04 5.28
589 592 2.279502 TTTCGCCGGAGAGATGGACG 62.280 60.000 5.05 0.00 0.00 4.79
590 593 0.806492 GTTTCGCCGGAGAGATGGAC 60.806 60.000 5.05 0.00 0.00 4.02
591 594 1.515954 GTTTCGCCGGAGAGATGGA 59.484 57.895 5.05 0.00 0.00 3.41
592 595 1.521681 GGTTTCGCCGGAGAGATGG 60.522 63.158 5.05 0.00 0.00 3.51
593 596 4.110493 GGTTTCGCCGGAGAGATG 57.890 61.111 5.05 0.00 0.00 2.90
605 608 3.564027 CTCGCGGCCATCGGTTTC 61.564 66.667 6.13 0.00 39.69 2.78
1312 1317 1.076705 GGAATCAGGAGGTTGGGCC 60.077 63.158 0.00 0.00 37.58 5.80
1589 1595 8.236585 TGAGAAATGGTAATGATACAAATGGG 57.763 34.615 0.00 0.00 33.45 4.00
1638 1646 8.573885 ACATTAAGAGTCATCATAATTGGCATG 58.426 33.333 0.00 0.00 29.15 4.06
1649 1657 4.202121 GCGTCCCTACATTAAGAGTCATCA 60.202 45.833 0.00 0.00 0.00 3.07
1759 1767 3.398318 AGTAAATCCACCATTTCCCCC 57.602 47.619 0.00 0.00 36.09 5.40
1767 1775 6.381498 TGACAAAGGATAGTAAATCCACCA 57.619 37.500 6.79 0.00 40.61 4.17
1778 1786 6.824553 TCATCCTCTCAATGACAAAGGATAG 58.175 40.000 13.54 9.97 43.38 2.08
1803 1811 4.701651 TGATCACCTGCAAACCAAATAGAG 59.298 41.667 0.00 0.00 0.00 2.43
1806 1814 4.218200 CACTGATCACCTGCAAACCAAATA 59.782 41.667 0.00 0.00 0.00 1.40
1831 1839 2.159198 GCAGTTTGGCCCAGTATTGATG 60.159 50.000 0.00 0.00 0.00 3.07
1962 1970 0.391661 TTAAGGCCTCTCTTGCAGCG 60.392 55.000 5.23 0.00 0.00 5.18
2210 2219 5.707066 AAGTTCCCTTCTCAATATCTGCT 57.293 39.130 0.00 0.00 0.00 4.24
2368 2377 6.433093 AGACAAAGTGGACAACAAGTAAAAGT 59.567 34.615 0.00 0.00 0.00 2.66
2372 2381 6.827586 AAAGACAAAGTGGACAACAAGTAA 57.172 33.333 0.00 0.00 0.00 2.24
2587 2596 5.339008 AATGGCTAGACACTTCGATAACA 57.661 39.130 0.00 0.00 0.00 2.41
2591 2600 4.471904 TCAAATGGCTAGACACTTCGAT 57.528 40.909 0.00 0.00 0.00 3.59
2777 2786 9.761504 AGATCAAGAGACAAATAGATACACATG 57.238 33.333 0.00 0.00 0.00 3.21
2933 2942 9.772973 ATTGCAGCATTGTCATTAATCATTAAT 57.227 25.926 0.00 0.00 36.31 1.40
2934 2943 9.602568 AATTGCAGCATTGTCATTAATCATTAA 57.397 25.926 0.00 0.00 0.00 1.40
2936 2945 9.256477 CTAATTGCAGCATTGTCATTAATCATT 57.744 29.630 0.00 0.00 0.00 2.57
2937 2946 8.635328 TCTAATTGCAGCATTGTCATTAATCAT 58.365 29.630 0.00 0.00 0.00 2.45
2938 2947 7.998580 TCTAATTGCAGCATTGTCATTAATCA 58.001 30.769 0.00 0.00 0.00 2.57
2939 2948 8.912658 CATCTAATTGCAGCATTGTCATTAATC 58.087 33.333 0.00 0.00 0.00 1.75
3081 3090 4.293415 CTGAAGATTTTTGCCTGTCACAC 58.707 43.478 0.00 0.00 0.00 3.82
3590 3628 7.913674 AAAGTTCATTTTTGTTTTGTGCCTA 57.086 28.000 0.00 0.00 0.00 3.93
3735 3774 6.840780 ATCCTTGAGTTTTACAAATCCTGG 57.159 37.500 0.00 0.00 0.00 4.45
3973 4012 4.968626 TGACATGCTTAAATGTGCTTACG 58.031 39.130 0.00 0.00 40.87 3.18
3988 4027 9.681692 TTTTATATTGCACTAATGATGACATGC 57.318 29.630 0.00 0.00 36.79 4.06
4023 4062 6.776603 AGATGAATTTTGGAGGATTCTCATCC 59.223 38.462 2.72 0.98 46.80 3.51
4024 4063 7.820578 AGATGAATTTTGGAGGATTCTCATC 57.179 36.000 2.72 0.00 41.69 2.92
4025 4064 8.721479 TCTAGATGAATTTTGGAGGATTCTCAT 58.279 33.333 2.72 0.00 41.69 2.90
4026 4065 8.094284 TCTAGATGAATTTTGGAGGATTCTCA 57.906 34.615 2.72 0.00 41.69 3.27
4027 4066 8.970859 TTCTAGATGAATTTTGGAGGATTCTC 57.029 34.615 0.00 0.00 39.25 2.87
4030 4069 9.579932 GGTATTCTAGATGAATTTTGGAGGATT 57.420 33.333 0.00 0.00 42.28 3.01
4031 4070 8.953665 AGGTATTCTAGATGAATTTTGGAGGAT 58.046 33.333 0.00 0.00 42.28 3.24
4032 4071 8.337118 AGGTATTCTAGATGAATTTTGGAGGA 57.663 34.615 0.00 0.00 42.28 3.71
4033 4072 8.986929 AAGGTATTCTAGATGAATTTTGGAGG 57.013 34.615 0.00 0.00 42.28 4.30
4035 4074 9.973661 TCAAAGGTATTCTAGATGAATTTTGGA 57.026 29.630 14.36 0.72 42.28 3.53
4042 4081 9.113838 GCTTGATTCAAAGGTATTCTAGATGAA 57.886 33.333 5.42 5.42 39.24 2.57
4043 4082 8.489489 AGCTTGATTCAAAGGTATTCTAGATGA 58.511 33.333 0.01 0.00 36.16 2.92
4044 4083 8.674263 AGCTTGATTCAAAGGTATTCTAGATG 57.326 34.615 0.01 0.00 36.16 2.90
4045 4084 9.692325 AAAGCTTGATTCAAAGGTATTCTAGAT 57.308 29.630 0.00 0.00 36.90 1.98
4046 4085 9.520515 AAAAGCTTGATTCAAAGGTATTCTAGA 57.479 29.630 0.00 0.00 36.90 2.43
4048 4087 9.912634 CAAAAAGCTTGATTCAAAGGTATTCTA 57.087 29.630 0.00 0.00 36.90 2.10
4049 4088 7.386025 GCAAAAAGCTTGATTCAAAGGTATTCT 59.614 33.333 0.00 0.00 36.90 2.40
4050 4089 7.513132 GCAAAAAGCTTGATTCAAAGGTATTC 58.487 34.615 0.00 0.00 36.90 1.75
4051 4090 6.146021 CGCAAAAAGCTTGATTCAAAGGTATT 59.854 34.615 0.00 0.00 42.61 1.89
4052 4091 5.634859 CGCAAAAAGCTTGATTCAAAGGTAT 59.365 36.000 0.00 0.00 42.61 2.73
4053 4092 4.981674 CGCAAAAAGCTTGATTCAAAGGTA 59.018 37.500 0.00 0.00 42.61 3.08
4054 4093 3.803778 CGCAAAAAGCTTGATTCAAAGGT 59.196 39.130 0.00 0.00 42.61 3.50
4055 4094 3.363280 GCGCAAAAAGCTTGATTCAAAGG 60.363 43.478 0.30 0.00 42.61 3.11
4056 4095 3.245754 TGCGCAAAAAGCTTGATTCAAAG 59.754 39.130 8.16 0.00 42.61 2.77
4057 4096 3.193263 TGCGCAAAAAGCTTGATTCAAA 58.807 36.364 8.16 0.00 42.61 2.69
4058 4097 2.819115 TGCGCAAAAAGCTTGATTCAA 58.181 38.095 8.16 0.00 42.61 2.69
4059 4098 2.505628 TGCGCAAAAAGCTTGATTCA 57.494 40.000 8.16 0.00 42.61 2.57
4060 4099 2.346545 GGATGCGCAAAAAGCTTGATTC 59.653 45.455 17.11 1.76 42.61 2.52
4061 4100 2.028748 AGGATGCGCAAAAAGCTTGATT 60.029 40.909 17.11 0.00 42.61 2.57
4062 4101 1.547372 AGGATGCGCAAAAAGCTTGAT 59.453 42.857 17.11 0.00 42.61 2.57
4063 4102 0.961019 AGGATGCGCAAAAAGCTTGA 59.039 45.000 17.11 0.00 42.61 3.02
4064 4103 1.787012 AAGGATGCGCAAAAAGCTTG 58.213 45.000 17.11 0.00 42.61 4.01
4072 4111 2.487762 CAGGTAAGAAAAGGATGCGCAA 59.512 45.455 17.11 0.00 0.00 4.85
4219 4259 0.167908 ACACACACGCACACACAAAG 59.832 50.000 0.00 0.00 0.00 2.77
4221 4261 1.231296 ACACACACACGCACACACAA 61.231 50.000 0.00 0.00 0.00 3.33
4230 4280 1.225991 GCACACACACACACACACG 60.226 57.895 0.00 0.00 0.00 4.49
4421 4471 4.314961 CACCTACAGTGTACATTTCTGCA 58.685 43.478 10.92 0.00 41.93 4.41
4611 4662 4.307432 ACATGGTCACTTCGAAACTGTAG 58.693 43.478 0.00 0.00 0.00 2.74
4628 4679 0.105593 AGATGCAGTCGCCTACATGG 59.894 55.000 0.00 0.00 37.32 3.66
4874 4925 3.309296 AGAGTGACCCAAAGAACTCTCA 58.691 45.455 0.00 0.00 44.70 3.27
4892 4943 2.890311 CCCTATCACCAGCACTAGAGAG 59.110 54.545 0.00 0.00 0.00 3.20
4898 4949 0.471617 GATGCCCTATCACCAGCACT 59.528 55.000 0.00 0.00 38.21 4.40
4904 4955 0.398318 GGTGGAGATGCCCTATCACC 59.602 60.000 10.27 10.27 44.21 4.02
4908 4959 1.410850 CCACGGTGGAGATGCCCTAT 61.411 60.000 22.77 0.00 40.96 2.57
4931 4982 2.613133 CGTTTGAGGGTGTCCGTTTAAA 59.387 45.455 0.00 0.00 38.33 1.52
4942 4993 0.531311 GTCAACGGACGTTTGAGGGT 60.531 55.000 7.44 0.00 36.00 4.34
5119 5203 6.878317 TGGTGTTCATGTTGGTTTTATTTCA 58.122 32.000 0.00 0.00 0.00 2.69
5120 5204 7.795859 CATGGTGTTCATGTTGGTTTTATTTC 58.204 34.615 0.00 0.00 46.11 2.17
5121 5205 7.727331 CATGGTGTTCATGTTGGTTTTATTT 57.273 32.000 0.00 0.00 46.11 1.40
5134 5218 2.102252 ACCGCAAAAACATGGTGTTCAT 59.898 40.909 0.00 0.00 40.14 2.57
5146 5230 3.955101 CCGTCGCCACCGCAAAAA 61.955 61.111 0.00 0.00 34.03 1.94
5173 5257 1.059006 CCTCCTTAGATGGGCTGGCT 61.059 60.000 0.00 0.00 0.00 4.75
5206 5293 1.378119 CAAGAGCAGCTCATGGCCA 60.378 57.895 24.64 8.56 43.05 5.36
5235 5323 2.503061 CCGATGGCCTCAGACCAG 59.497 66.667 3.32 0.00 41.46 4.00
5305 5395 1.333636 CCCTCAGCCGTCAAGGAGAT 61.334 60.000 0.00 0.00 45.00 2.75
5306 5396 1.984570 CCCTCAGCCGTCAAGGAGA 60.985 63.158 0.00 0.00 45.00 3.71
5378 5523 3.559171 GGAGCTGGTGGATTACTGAACAA 60.559 47.826 0.00 0.00 0.00 2.83
5379 5524 2.027192 GGAGCTGGTGGATTACTGAACA 60.027 50.000 0.00 0.00 0.00 3.18
5384 5529 0.537188 CGTGGAGCTGGTGGATTACT 59.463 55.000 0.00 0.00 0.00 2.24
5388 5533 0.620556 ATTTCGTGGAGCTGGTGGAT 59.379 50.000 0.00 0.00 0.00 3.41
5393 5538 0.539051 AGAGGATTTCGTGGAGCTGG 59.461 55.000 0.00 0.00 0.00 4.85
5394 5539 2.393271 AAGAGGATTTCGTGGAGCTG 57.607 50.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.