Multiple sequence alignment - TraesCS3D01G251200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G251200 chr3D 100.000 2711 0 0 1 2711 352109827 352107117 0.000000e+00 5007.0
1 TraesCS3D01G251200 chr3D 88.525 61 5 1 2499 2559 481670774 481670832 3.740000e-09 73.1
2 TraesCS3D01G251200 chr3A 93.936 1814 59 30 572 2344 469833004 469831201 0.000000e+00 2693.0
3 TraesCS3D01G251200 chr3A 92.937 269 18 1 47 315 469833581 469833314 9.100000e-105 390.0
4 TraesCS3D01G251200 chr3A 94.118 119 6 1 2338 2456 469830535 469830418 2.140000e-41 180.0
5 TraesCS3D01G251200 chr3B 92.107 1761 66 33 604 2332 450365981 450364262 0.000000e+00 2414.0
6 TraesCS3D01G251200 chr3B 91.135 282 17 2 79 353 450372285 450372005 2.550000e-100 375.0
7 TraesCS3D01G251200 chr3B 96.639 119 3 1 2338 2456 450363678 450363561 2.130000e-46 196.0
8 TraesCS3D01G251200 chr6B 96.667 120 4 0 2592 2711 277763855 277763974 1.650000e-47 200.0
9 TraesCS3D01G251200 chr5B 94.872 117 6 0 2595 2711 62902015 62901899 1.660000e-42 183.0
10 TraesCS3D01G251200 chr5B 92.308 117 9 0 2595 2711 621135062 621134946 1.670000e-37 167.0
11 TraesCS3D01G251200 chr5B 90.833 120 11 0 2592 2711 427376089 427376208 7.770000e-36 161.0
12 TraesCS3D01G251200 chr5B 88.525 61 5 1 2499 2559 222897918 222897860 3.740000e-09 73.1
13 TraesCS3D01G251200 chr5B 88.710 62 3 3 2499 2559 472073711 472073653 3.740000e-09 73.1
14 TraesCS3D01G251200 chr4B 94.872 117 5 1 2595 2711 373051116 373051001 5.960000e-42 182.0
15 TraesCS3D01G251200 chr4A 93.333 120 8 0 2592 2711 677285868 677285987 7.710000e-41 178.0
16 TraesCS3D01G251200 chr2D 93.966 116 7 0 2596 2711 428541330 428541215 2.770000e-40 176.0
17 TraesCS3D01G251200 chr6D 93.162 117 7 1 2595 2711 154530469 154530354 1.290000e-38 171.0
18 TraesCS3D01G251200 chr6D 87.500 72 6 2 2488 2559 154530130 154530062 2.240000e-11 80.5
19 TraesCS3D01G251200 chr1B 91.667 120 10 0 2592 2711 443047131 443047250 1.670000e-37 167.0
20 TraesCS3D01G251200 chr1B 91.228 114 9 1 1598 1711 612403536 612403424 1.300000e-33 154.0
21 TraesCS3D01G251200 chr1B 89.247 93 10 0 1205 1297 612404302 612404210 1.710000e-22 117.0
22 TraesCS3D01G251200 chr1B 88.525 61 5 1 2499 2559 164352516 164352458 3.740000e-09 73.1
23 TraesCS3D01G251200 chr1D 91.228 114 9 1 1598 1711 446800993 446800881 1.300000e-33 154.0
24 TraesCS3D01G251200 chr1A 91.228 114 9 1 1598 1711 542825477 542825365 1.300000e-33 154.0
25 TraesCS3D01G251200 chr1A 89.247 93 10 0 1205 1297 542826270 542826178 1.710000e-22 117.0
26 TraesCS3D01G251200 chr7D 90.625 64 4 1 2496 2559 281450244 281450183 1.730000e-12 84.2
27 TraesCS3D01G251200 chr7D 88.525 61 5 1 2499 2559 537685266 537685208 3.740000e-09 73.1
28 TraesCS3D01G251200 chr4D 86.765 68 6 2 2492 2559 28570260 28570196 3.740000e-09 73.1
29 TraesCS3D01G251200 chr4D 88.525 61 5 1 2499 2559 424714987 424715045 3.740000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G251200 chr3D 352107117 352109827 2710 True 5007.000000 5007 100.000000 1 2711 1 chr3D.!!$R1 2710
1 TraesCS3D01G251200 chr3A 469830418 469833581 3163 True 1087.666667 2693 93.663667 47 2456 3 chr3A.!!$R1 2409
2 TraesCS3D01G251200 chr3B 450363561 450365981 2420 True 1305.000000 2414 94.373000 604 2456 2 chr3B.!!$R2 1852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 706 0.100682 GAGAGCGCCACTATCGTTCA 59.899 55.0 2.29 0.0 39.17 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 3436 0.03779 GAGCAGGTTCTCACGCTCTT 60.038 55.0 0.0 0.0 45.86 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.437289 TCTGTGCTGTTAAAATCCTTGTG 57.563 39.130 0.00 0.00 0.00 3.33
23 24 3.976169 TGTGCTGTTAAAATCCTTGTGC 58.024 40.909 0.00 0.00 0.00 4.57
24 25 3.382865 TGTGCTGTTAAAATCCTTGTGCA 59.617 39.130 0.00 0.00 0.00 4.57
25 26 4.039004 TGTGCTGTTAAAATCCTTGTGCAT 59.961 37.500 0.00 0.00 0.00 3.96
26 27 4.622740 GTGCTGTTAAAATCCTTGTGCATC 59.377 41.667 0.00 0.00 0.00 3.91
27 28 4.280425 TGCTGTTAAAATCCTTGTGCATCA 59.720 37.500 0.00 0.00 0.00 3.07
28 29 4.860907 GCTGTTAAAATCCTTGTGCATCAG 59.139 41.667 0.00 0.00 0.00 2.90
29 30 5.335897 GCTGTTAAAATCCTTGTGCATCAGA 60.336 40.000 0.00 0.00 0.00 3.27
30 31 6.626623 GCTGTTAAAATCCTTGTGCATCAGAT 60.627 38.462 0.00 0.00 0.00 2.90
31 32 7.230849 TGTTAAAATCCTTGTGCATCAGATT 57.769 32.000 0.00 0.00 0.00 2.40
32 33 8.347004 TGTTAAAATCCTTGTGCATCAGATTA 57.653 30.769 0.00 0.00 0.00 1.75
33 34 8.801299 TGTTAAAATCCTTGTGCATCAGATTAA 58.199 29.630 0.00 0.00 0.00 1.40
34 35 9.294030 GTTAAAATCCTTGTGCATCAGATTAAG 57.706 33.333 0.00 0.00 0.00 1.85
35 36 7.707624 AAAATCCTTGTGCATCAGATTAAGA 57.292 32.000 0.00 0.00 0.00 2.10
36 37 6.939132 AATCCTTGTGCATCAGATTAAGAG 57.061 37.500 0.00 0.00 0.00 2.85
37 38 4.774124 TCCTTGTGCATCAGATTAAGAGG 58.226 43.478 0.00 0.00 0.00 3.69
38 39 4.225942 TCCTTGTGCATCAGATTAAGAGGT 59.774 41.667 0.00 0.00 0.00 3.85
39 40 5.425217 TCCTTGTGCATCAGATTAAGAGGTA 59.575 40.000 0.00 0.00 0.00 3.08
40 41 6.100279 TCCTTGTGCATCAGATTAAGAGGTAT 59.900 38.462 0.00 0.00 0.00 2.73
41 42 6.204301 CCTTGTGCATCAGATTAAGAGGTATG 59.796 42.308 0.00 0.00 0.00 2.39
42 43 6.239217 TGTGCATCAGATTAAGAGGTATGT 57.761 37.500 0.00 0.00 0.00 2.29
43 44 6.051074 TGTGCATCAGATTAAGAGGTATGTG 58.949 40.000 0.00 0.00 0.00 3.21
44 45 6.051717 GTGCATCAGATTAAGAGGTATGTGT 58.948 40.000 0.00 0.00 0.00 3.72
45 46 7.147742 TGTGCATCAGATTAAGAGGTATGTGTA 60.148 37.037 0.00 0.00 0.00 2.90
61 62 5.796350 ATGTGTAGTAAATTCGTGCTTCC 57.204 39.130 0.00 0.00 0.00 3.46
63 64 2.669434 TGTAGTAAATTCGTGCTTCCGC 59.331 45.455 0.00 0.00 0.00 5.54
79 80 5.822519 TGCTTCCGCATCTTACTGAATAATT 59.177 36.000 0.00 0.00 42.25 1.40
86 87 7.800380 CCGCATCTTACTGAATAATTGATTGAC 59.200 37.037 0.00 0.00 0.00 3.18
101 102 5.114764 TGATTGACATTGAAGGGCATCTA 57.885 39.130 0.00 0.00 0.00 1.98
113 114 2.374504 AGGGCATCTATCTTGTCCATGG 59.625 50.000 4.97 4.97 41.47 3.66
122 123 7.437713 TCTATCTTGTCCATGGTAAAGATGT 57.562 36.000 32.55 21.60 39.20 3.06
164 165 1.442520 CGTCCCAACAGCGCAATTG 60.443 57.895 11.47 13.54 0.00 2.32
173 174 1.871039 ACAGCGCAATTGACGTTAAGT 59.129 42.857 11.47 3.42 0.00 2.24
192 193 2.105128 GCGGTGGATCGAGTCAGG 59.895 66.667 0.00 0.00 0.00 3.86
222 223 2.990479 GGTTCCGATCTGGCCACT 59.010 61.111 0.00 0.00 37.80 4.00
276 277 1.082756 CACGCGGCAAGTGAACTTC 60.083 57.895 12.47 0.00 41.83 3.01
277 278 2.251642 ACGCGGCAAGTGAACTTCC 61.252 57.895 12.47 0.00 33.11 3.46
315 316 0.391597 TCTCCACGTGGTTCCTTCAC 59.608 55.000 32.74 0.00 36.34 3.18
317 318 1.599797 CCACGTGGTTCCTTCACCC 60.600 63.158 26.95 0.00 35.73 4.61
318 319 1.147376 CACGTGGTTCCTTCACCCA 59.853 57.895 7.95 0.00 35.73 4.51
319 320 1.147600 ACGTGGTTCCTTCACCCAC 59.852 57.895 0.00 0.00 44.16 4.61
321 322 1.228459 GTGGTTCCTTCACCCACCC 60.228 63.158 0.00 0.00 42.27 4.61
322 323 2.033602 GGTTCCTTCACCCACCCG 59.966 66.667 0.00 0.00 0.00 5.28
323 324 2.033602 GTTCCTTCACCCACCCGG 59.966 66.667 0.00 0.00 37.81 5.73
324 325 3.961414 TTCCTTCACCCACCCGGC 61.961 66.667 0.00 0.00 33.26 6.13
325 326 4.974438 TCCTTCACCCACCCGGCT 62.974 66.667 0.00 0.00 33.26 5.52
326 327 4.722700 CCTTCACCCACCCGGCTG 62.723 72.222 0.00 0.00 33.26 4.85
327 328 3.953775 CTTCACCCACCCGGCTGT 61.954 66.667 0.00 0.00 33.26 4.40
328 329 3.491598 CTTCACCCACCCGGCTGTT 62.492 63.158 0.00 0.00 33.26 3.16
329 330 2.119484 CTTCACCCACCCGGCTGTTA 62.119 60.000 0.00 0.00 33.26 2.41
330 331 1.706995 TTCACCCACCCGGCTGTTAA 61.707 55.000 0.00 0.00 33.26 2.01
331 332 1.228306 CACCCACCCGGCTGTTAAA 60.228 57.895 0.00 0.00 33.26 1.52
332 333 0.824182 CACCCACCCGGCTGTTAAAA 60.824 55.000 0.00 0.00 33.26 1.52
333 334 0.824595 ACCCACCCGGCTGTTAAAAC 60.825 55.000 0.00 0.00 33.26 2.43
334 335 1.529152 CCCACCCGGCTGTTAAAACC 61.529 60.000 0.00 0.00 0.00 3.27
335 336 0.538746 CCACCCGGCTGTTAAAACCT 60.539 55.000 0.00 0.00 0.00 3.50
336 337 0.596082 CACCCGGCTGTTAAAACCTG 59.404 55.000 0.00 0.00 0.00 4.00
337 338 0.538746 ACCCGGCTGTTAAAACCTGG 60.539 55.000 0.00 0.00 34.27 4.45
338 339 0.250989 CCCGGCTGTTAAAACCTGGA 60.251 55.000 0.00 0.00 29.81 3.86
339 340 1.615919 CCCGGCTGTTAAAACCTGGAT 60.616 52.381 0.00 0.00 29.81 3.41
340 341 1.472480 CCGGCTGTTAAAACCTGGATG 59.528 52.381 0.00 0.00 0.00 3.51
341 342 1.472480 CGGCTGTTAAAACCTGGATGG 59.528 52.381 0.00 0.00 42.93 3.51
342 343 1.204704 GGCTGTTAAAACCTGGATGGC 59.795 52.381 0.00 0.00 40.22 4.40
343 344 1.892474 GCTGTTAAAACCTGGATGGCA 59.108 47.619 0.00 0.00 40.22 4.92
344 345 2.497273 GCTGTTAAAACCTGGATGGCAT 59.503 45.455 0.00 0.00 40.22 4.40
345 346 3.699038 GCTGTTAAAACCTGGATGGCATA 59.301 43.478 0.00 0.00 40.22 3.14
346 347 4.342092 GCTGTTAAAACCTGGATGGCATAT 59.658 41.667 0.00 0.00 40.22 1.78
354 355 2.490903 CCTGGATGGCATATTAGCTTGC 59.509 50.000 0.00 0.00 38.14 4.01
362 363 2.413765 GCATATTAGCTTGCTGCATCGG 60.414 50.000 1.84 0.00 45.94 4.18
375 376 3.304257 GCTGCATCGGAATGATAAACCAG 60.304 47.826 0.00 0.00 34.83 4.00
376 377 3.213506 TGCATCGGAATGATAAACCAGG 58.786 45.455 0.00 0.00 34.83 4.45
377 378 2.030805 GCATCGGAATGATAAACCAGGC 60.031 50.000 0.00 0.00 34.83 4.85
378 379 1.948104 TCGGAATGATAAACCAGGCG 58.052 50.000 0.00 0.00 0.00 5.52
379 380 1.208535 TCGGAATGATAAACCAGGCGT 59.791 47.619 0.00 0.00 0.00 5.68
381 382 2.639065 GGAATGATAAACCAGGCGTCA 58.361 47.619 0.00 0.00 0.00 4.35
382 383 2.354821 GGAATGATAAACCAGGCGTCAC 59.645 50.000 0.00 0.00 0.00 3.67
395 407 1.003355 CGTCACCCAAGCTGGTCAT 60.003 57.895 0.00 0.00 36.12 3.06
399 411 2.765969 CCCAAGCTGGTCATGGGT 59.234 61.111 11.73 0.00 46.19 4.51
400 412 1.998530 CCCAAGCTGGTCATGGGTA 59.001 57.895 11.73 0.00 46.19 3.69
412 424 5.189928 TGGTCATGGGTATATTGTTGTGAC 58.810 41.667 0.00 0.00 35.28 3.67
429 441 8.780846 TGTTGTGACAAGTAAAAGAGTTAAGA 57.219 30.769 0.00 0.00 31.49 2.10
430 442 9.391006 TGTTGTGACAAGTAAAAGAGTTAAGAT 57.609 29.630 0.00 0.00 31.49 2.40
470 499 8.777865 TGAATGAATCGACTCTTTCAAATAGT 57.222 30.769 19.07 0.00 36.86 2.12
471 500 8.873830 TGAATGAATCGACTCTTTCAAATAGTC 58.126 33.333 19.07 5.73 36.86 2.59
472 501 7.778470 ATGAATCGACTCTTTCAAATAGTCC 57.222 36.000 9.47 0.00 37.02 3.85
473 502 6.936279 TGAATCGACTCTTTCAAATAGTCCT 58.064 36.000 9.47 0.00 37.02 3.85
474 503 7.036220 TGAATCGACTCTTTCAAATAGTCCTC 58.964 38.462 9.47 5.52 37.02 3.71
475 504 5.326200 TCGACTCTTTCAAATAGTCCTCC 57.674 43.478 9.47 0.00 37.02 4.30
477 506 5.245301 TCGACTCTTTCAAATAGTCCTCCAA 59.755 40.000 9.47 0.00 37.02 3.53
478 507 5.932303 CGACTCTTTCAAATAGTCCTCCAAA 59.068 40.000 9.47 0.00 37.02 3.28
488 527 6.664428 AATAGTCCTCCAAATCTAGCTCTC 57.336 41.667 0.00 0.00 0.00 3.20
489 528 3.987745 AGTCCTCCAAATCTAGCTCTCA 58.012 45.455 0.00 0.00 0.00 3.27
490 529 3.960102 AGTCCTCCAAATCTAGCTCTCAG 59.040 47.826 0.00 0.00 0.00 3.35
491 530 2.697751 TCCTCCAAATCTAGCTCTCAGC 59.302 50.000 0.00 0.00 42.84 4.26
506 545 3.338249 TCTCAGCTGCTTGTTTGGATAC 58.662 45.455 9.47 0.00 0.00 2.24
526 565 3.902218 ACATCGGGAAATGTGGATTGAT 58.098 40.909 0.00 0.00 38.43 2.57
529 568 3.961849 TCGGGAAATGTGGATTGATGAA 58.038 40.909 0.00 0.00 0.00 2.57
530 569 4.339748 TCGGGAAATGTGGATTGATGAAA 58.660 39.130 0.00 0.00 0.00 2.69
532 571 5.045215 CGGGAAATGTGGATTGATGAAATG 58.955 41.667 0.00 0.00 0.00 2.32
549 666 4.339530 TGAAATGACGAGCTAGAGTGCTAT 59.660 41.667 0.00 0.00 44.17 2.97
550 667 4.497473 AATGACGAGCTAGAGTGCTATC 57.503 45.455 0.00 0.00 44.17 2.08
553 670 3.885901 TGACGAGCTAGAGTGCTATCATT 59.114 43.478 0.00 0.00 44.17 2.57
554 671 4.225984 GACGAGCTAGAGTGCTATCATTG 58.774 47.826 0.00 0.00 44.17 2.82
557 674 4.443725 CGAGCTAGAGTGCTATCATTGTTG 59.556 45.833 0.00 0.00 44.17 3.33
561 678 6.314896 AGCTAGAGTGCTATCATTGTTGTTTC 59.685 38.462 0.00 0.00 42.10 2.78
563 680 5.237815 AGAGTGCTATCATTGTTGTTTCGA 58.762 37.500 0.00 0.00 0.00 3.71
564 681 5.700832 AGAGTGCTATCATTGTTGTTTCGAA 59.299 36.000 0.00 0.00 0.00 3.71
566 683 6.734137 AGTGCTATCATTGTTGTTTCGAAAA 58.266 32.000 13.10 0.00 0.00 2.29
567 684 7.199766 AGTGCTATCATTGTTGTTTCGAAAAA 58.800 30.769 13.10 3.93 0.00 1.94
583 700 2.789409 AAAAAGGAGAGCGCCACTAT 57.211 45.000 2.29 0.00 0.00 2.12
584 701 2.317530 AAAAGGAGAGCGCCACTATC 57.682 50.000 2.29 0.00 35.79 2.08
585 702 0.103208 AAAGGAGAGCGCCACTATCG 59.897 55.000 2.29 0.00 37.51 2.92
586 703 1.038130 AAGGAGAGCGCCACTATCGT 61.038 55.000 2.29 0.00 37.51 3.73
587 704 1.038130 AGGAGAGCGCCACTATCGTT 61.038 55.000 2.29 0.00 37.51 3.85
588 705 0.595310 GGAGAGCGCCACTATCGTTC 60.595 60.000 2.29 0.00 37.51 3.95
589 706 0.100682 GAGAGCGCCACTATCGTTCA 59.899 55.000 2.29 0.00 39.17 3.18
590 707 0.747255 AGAGCGCCACTATCGTTCAT 59.253 50.000 2.29 0.00 39.17 2.57
591 708 1.137086 AGAGCGCCACTATCGTTCATT 59.863 47.619 2.29 0.00 39.17 2.57
592 709 1.933853 GAGCGCCACTATCGTTCATTT 59.066 47.619 2.29 0.00 37.18 2.32
593 710 2.351726 GAGCGCCACTATCGTTCATTTT 59.648 45.455 2.29 0.00 37.18 1.82
594 711 2.095853 AGCGCCACTATCGTTCATTTTG 59.904 45.455 2.29 0.00 0.00 2.44
595 712 2.159572 GCGCCACTATCGTTCATTTTGT 60.160 45.455 0.00 0.00 0.00 2.83
596 713 3.669557 GCGCCACTATCGTTCATTTTGTT 60.670 43.478 0.00 0.00 0.00 2.83
597 714 4.436317 GCGCCACTATCGTTCATTTTGTTA 60.436 41.667 0.00 0.00 0.00 2.41
598 715 5.019498 CGCCACTATCGTTCATTTTGTTAC 58.981 41.667 0.00 0.00 0.00 2.50
681 806 3.093814 TGCATTGAATTGAGCTCATGGT 58.906 40.909 19.04 5.57 0.00 3.55
683 808 4.020928 TGCATTGAATTGAGCTCATGGTTT 60.021 37.500 19.04 9.19 0.00 3.27
841 970 3.827898 GTCCGGCCTCTCCTCGTG 61.828 72.222 0.00 0.00 0.00 4.35
845 974 0.536687 CCGGCCTCTCCTCGTGTATA 60.537 60.000 0.00 0.00 0.00 1.47
846 975 1.535833 CGGCCTCTCCTCGTGTATAT 58.464 55.000 0.00 0.00 0.00 0.86
851 980 5.652518 GGCCTCTCCTCGTGTATATTTATC 58.347 45.833 0.00 0.00 0.00 1.75
852 981 5.185249 GGCCTCTCCTCGTGTATATTTATCA 59.815 44.000 0.00 0.00 0.00 2.15
897 1026 1.806542 ACCGAAACATCATCAGCACAC 59.193 47.619 0.00 0.00 0.00 3.82
903 1032 1.202915 ACATCATCAGCACACCCAACA 60.203 47.619 0.00 0.00 0.00 3.33
1074 1206 2.202676 GCGACGCTCTTCCTCCTG 60.203 66.667 13.73 0.00 0.00 3.86
1176 1317 1.136329 ACCACCAGCAGAAGGACCAT 61.136 55.000 0.00 0.00 0.00 3.55
1309 1450 2.094338 CCCGAGTACAACTACAACCCTC 60.094 54.545 0.00 0.00 0.00 4.30
1764 1911 4.804806 TGCAGATCAGCTTGTGCA 57.195 50.000 11.68 6.15 43.50 4.57
1775 1922 1.648467 GCTTGTGCAGGGTTCGATCC 61.648 60.000 3.76 3.76 39.41 3.36
1831 1986 6.070897 TGTTCATTGGATTGTTGTGTAGTG 57.929 37.500 0.00 0.00 0.00 2.74
1838 1993 1.440938 TTGTTGTGTAGTGGTGCCGC 61.441 55.000 0.00 0.00 0.00 6.53
1847 2002 1.227263 GTGGTGCCGCGTATGAGAT 60.227 57.895 4.92 0.00 0.00 2.75
1848 2003 1.227234 TGGTGCCGCGTATGAGATG 60.227 57.895 4.92 0.00 0.00 2.90
1849 2004 2.598632 GGTGCCGCGTATGAGATGC 61.599 63.158 4.92 0.00 36.65 3.91
1850 2005 1.592669 GTGCCGCGTATGAGATGCT 60.593 57.895 4.92 0.00 37.99 3.79
2044 2209 2.036217 CACGCCAATTCGCATATTTCG 58.964 47.619 0.00 0.00 0.00 3.46
2195 2363 3.055385 AGAAGCCCGCAGTTATTCAGTAA 60.055 43.478 0.00 0.00 0.00 2.24
2196 2364 2.906354 AGCCCGCAGTTATTCAGTAAG 58.094 47.619 0.00 0.00 0.00 2.34
2225 2398 6.114767 TCTTTTGAAAGCTTTGCCTCATTTT 58.885 32.000 18.30 0.00 35.99 1.82
2269 2447 4.839796 CGTTATTTACGGAAAATCGGCAT 58.160 39.130 0.00 0.00 46.42 4.40
2292 2470 0.034896 CCGCTACAACACAGGAAGGT 59.965 55.000 0.00 0.00 0.00 3.50
2332 2510 5.923733 AACTATCAACACAAAACCCACAA 57.076 34.783 0.00 0.00 0.00 3.33
2337 2515 3.060602 CAACACAAAACCCACAAACGTT 58.939 40.909 0.00 0.00 0.00 3.99
2463 3312 9.601217 TTTAGAAATAGCTCAAATACAGAGGAC 57.399 33.333 0.00 0.00 33.72 3.85
2464 3313 7.187824 AGAAATAGCTCAAATACAGAGGACA 57.812 36.000 0.00 0.00 33.72 4.02
2465 3314 7.624549 AGAAATAGCTCAAATACAGAGGACAA 58.375 34.615 0.00 0.00 33.72 3.18
2466 3315 7.550906 AGAAATAGCTCAAATACAGAGGACAAC 59.449 37.037 0.00 0.00 33.72 3.32
2467 3316 4.899352 AGCTCAAATACAGAGGACAACT 57.101 40.909 0.00 0.00 33.72 3.16
2468 3317 4.826556 AGCTCAAATACAGAGGACAACTC 58.173 43.478 0.00 0.00 46.98 3.01
2484 3333 9.770097 GAGGACAACTCATTCATTATAATCTCA 57.230 33.333 0.00 0.00 45.85 3.27
2485 3334 9.775854 AGGACAACTCATTCATTATAATCTCAG 57.224 33.333 0.00 0.00 0.00 3.35
2486 3335 9.553064 GGACAACTCATTCATTATAATCTCAGT 57.447 33.333 0.00 0.00 0.00 3.41
2488 3337 9.334947 ACAACTCATTCATTATAATCTCAGTGG 57.665 33.333 0.00 0.00 0.00 4.00
2489 3338 9.551734 CAACTCATTCATTATAATCTCAGTGGA 57.448 33.333 0.00 0.00 0.00 4.02
2490 3339 9.553064 AACTCATTCATTATAATCTCAGTGGAC 57.447 33.333 0.00 0.00 0.00 4.02
2491 3340 8.932610 ACTCATTCATTATAATCTCAGTGGACT 58.067 33.333 0.00 0.00 0.00 3.85
2492 3341 9.775854 CTCATTCATTATAATCTCAGTGGACTT 57.224 33.333 0.00 0.00 0.00 3.01
2493 3342 9.770097 TCATTCATTATAATCTCAGTGGACTTC 57.230 33.333 0.00 0.00 0.00 3.01
2494 3343 8.997323 CATTCATTATAATCTCAGTGGACTTCC 58.003 37.037 0.00 0.00 0.00 3.46
2495 3344 7.675161 TCATTATAATCTCAGTGGACTTCCA 57.325 36.000 0.00 0.00 45.30 3.53
2504 3353 3.569827 TGGACTTCCAGACAAGGGA 57.430 52.632 0.00 0.00 42.01 4.20
2505 3354 1.352083 TGGACTTCCAGACAAGGGAG 58.648 55.000 0.00 0.00 42.01 4.30
2508 3357 1.059913 ACTTCCAGACAAGGGAGTGG 58.940 55.000 0.00 0.00 46.00 4.00
2509 3358 0.326264 CTTCCAGACAAGGGAGTGGG 59.674 60.000 0.00 0.00 35.46 4.61
2510 3359 0.104672 TTCCAGACAAGGGAGTGGGA 60.105 55.000 0.00 0.00 35.46 4.37
2511 3360 0.104672 TCCAGACAAGGGAGTGGGAA 60.105 55.000 0.00 0.00 0.00 3.97
2512 3361 0.771127 CCAGACAAGGGAGTGGGAAA 59.229 55.000 0.00 0.00 0.00 3.13
2513 3362 1.144913 CCAGACAAGGGAGTGGGAAAA 59.855 52.381 0.00 0.00 0.00 2.29
2514 3363 2.424234 CCAGACAAGGGAGTGGGAAAAA 60.424 50.000 0.00 0.00 0.00 1.94
2515 3364 2.887152 CAGACAAGGGAGTGGGAAAAAG 59.113 50.000 0.00 0.00 0.00 2.27
2516 3365 2.514160 AGACAAGGGAGTGGGAAAAAGT 59.486 45.455 0.00 0.00 0.00 2.66
2517 3366 2.623416 GACAAGGGAGTGGGAAAAAGTG 59.377 50.000 0.00 0.00 0.00 3.16
2518 3367 2.243736 ACAAGGGAGTGGGAAAAAGTGA 59.756 45.455 0.00 0.00 0.00 3.41
2519 3368 2.887152 CAAGGGAGTGGGAAAAAGTGAG 59.113 50.000 0.00 0.00 0.00 3.51
2520 3369 1.202940 AGGGAGTGGGAAAAAGTGAGC 60.203 52.381 0.00 0.00 0.00 4.26
2521 3370 1.478654 GGGAGTGGGAAAAAGTGAGCA 60.479 52.381 0.00 0.00 0.00 4.26
2522 3371 2.306847 GGAGTGGGAAAAAGTGAGCAA 58.693 47.619 0.00 0.00 0.00 3.91
2523 3372 2.693074 GGAGTGGGAAAAAGTGAGCAAA 59.307 45.455 0.00 0.00 0.00 3.68
2524 3373 3.132111 GGAGTGGGAAAAAGTGAGCAAAA 59.868 43.478 0.00 0.00 0.00 2.44
2525 3374 4.363138 GAGTGGGAAAAAGTGAGCAAAAG 58.637 43.478 0.00 0.00 0.00 2.27
2526 3375 3.769300 AGTGGGAAAAAGTGAGCAAAAGT 59.231 39.130 0.00 0.00 0.00 2.66
2527 3376 4.222810 AGTGGGAAAAAGTGAGCAAAAGTT 59.777 37.500 0.00 0.00 0.00 2.66
2528 3377 5.420739 AGTGGGAAAAAGTGAGCAAAAGTTA 59.579 36.000 0.00 0.00 0.00 2.24
2529 3378 6.071051 AGTGGGAAAAAGTGAGCAAAAGTTAA 60.071 34.615 0.00 0.00 0.00 2.01
2530 3379 6.592220 GTGGGAAAAAGTGAGCAAAAGTTAAA 59.408 34.615 0.00 0.00 0.00 1.52
2531 3380 7.118535 GTGGGAAAAAGTGAGCAAAAGTTAAAA 59.881 33.333 0.00 0.00 0.00 1.52
2532 3381 7.661847 TGGGAAAAAGTGAGCAAAAGTTAAAAA 59.338 29.630 0.00 0.00 0.00 1.94
2533 3382 7.960738 GGGAAAAAGTGAGCAAAAGTTAAAAAC 59.039 33.333 0.00 0.00 0.00 2.43
2534 3383 7.686529 GGAAAAAGTGAGCAAAAGTTAAAAACG 59.313 33.333 0.00 0.00 36.23 3.60
2535 3384 7.646446 AAAAGTGAGCAAAAGTTAAAAACGT 57.354 28.000 0.00 0.00 36.23 3.99
2536 3385 6.626199 AAGTGAGCAAAAGTTAAAAACGTG 57.374 33.333 0.00 0.00 36.23 4.49
2537 3386 5.099575 AGTGAGCAAAAGTTAAAAACGTGG 58.900 37.500 0.00 0.00 36.23 4.94
2538 3387 4.266739 GTGAGCAAAAGTTAAAAACGTGGG 59.733 41.667 0.00 0.00 36.23 4.61
2539 3388 3.787785 AGCAAAAGTTAAAAACGTGGGG 58.212 40.909 0.00 0.00 36.23 4.96
2540 3389 3.447944 AGCAAAAGTTAAAAACGTGGGGA 59.552 39.130 0.00 0.00 36.23 4.81
2541 3390 3.552699 GCAAAAGTTAAAAACGTGGGGAC 59.447 43.478 0.00 0.00 36.23 4.46
2542 3391 4.745649 CAAAAGTTAAAAACGTGGGGACA 58.254 39.130 0.00 0.00 36.23 4.02
2543 3392 5.169295 CAAAAGTTAAAAACGTGGGGACAA 58.831 37.500 0.00 0.00 46.06 3.18
2544 3393 5.402997 AAAGTTAAAAACGTGGGGACAAA 57.597 34.783 0.00 0.00 46.06 2.83
2545 3394 5.601583 AAGTTAAAAACGTGGGGACAAAT 57.398 34.783 0.00 0.00 46.06 2.32
2546 3395 6.712179 AAGTTAAAAACGTGGGGACAAATA 57.288 33.333 0.00 0.00 46.06 1.40
2547 3396 6.904463 AGTTAAAAACGTGGGGACAAATAT 57.096 33.333 0.00 0.00 46.06 1.28
2548 3397 6.683715 AGTTAAAAACGTGGGGACAAATATG 58.316 36.000 0.00 0.00 46.06 1.78
2549 3398 6.490721 AGTTAAAAACGTGGGGACAAATATGA 59.509 34.615 0.00 0.00 46.06 2.15
2550 3399 5.385509 AAAAACGTGGGGACAAATATGAG 57.614 39.130 0.00 0.00 46.06 2.90
2551 3400 3.713826 AACGTGGGGACAAATATGAGT 57.286 42.857 0.00 0.00 46.06 3.41
2552 3401 4.829872 AACGTGGGGACAAATATGAGTA 57.170 40.909 0.00 0.00 46.06 2.59
2553 3402 4.402056 ACGTGGGGACAAATATGAGTAG 57.598 45.455 0.00 0.00 46.06 2.57
2554 3403 4.028131 ACGTGGGGACAAATATGAGTAGA 58.972 43.478 0.00 0.00 46.06 2.59
2555 3404 4.099573 ACGTGGGGACAAATATGAGTAGAG 59.900 45.833 0.00 0.00 46.06 2.43
2556 3405 4.381411 GTGGGGACAAATATGAGTAGAGC 58.619 47.826 0.00 0.00 46.06 4.09
2557 3406 4.101741 GTGGGGACAAATATGAGTAGAGCT 59.898 45.833 0.00 0.00 46.06 4.09
2558 3407 5.304614 GTGGGGACAAATATGAGTAGAGCTA 59.695 44.000 0.00 0.00 46.06 3.32
2559 3408 6.014156 GTGGGGACAAATATGAGTAGAGCTAT 60.014 42.308 0.00 0.00 46.06 2.97
2560 3409 6.014242 TGGGGACAAATATGAGTAGAGCTATG 60.014 42.308 0.00 0.00 37.44 2.23
2561 3410 6.014156 GGGGACAAATATGAGTAGAGCTATGT 60.014 42.308 0.00 0.00 0.00 2.29
2562 3411 6.870965 GGGACAAATATGAGTAGAGCTATGTG 59.129 42.308 0.00 0.00 0.00 3.21
2563 3412 7.255977 GGGACAAATATGAGTAGAGCTATGTGA 60.256 40.741 0.00 0.00 0.00 3.58
2564 3413 8.310382 GGACAAATATGAGTAGAGCTATGTGAT 58.690 37.037 0.00 0.00 0.00 3.06
2570 3419 6.018589 TGAGTAGAGCTATGTGATATGTGC 57.981 41.667 0.00 0.00 0.00 4.57
2571 3420 5.772169 TGAGTAGAGCTATGTGATATGTGCT 59.228 40.000 0.00 0.00 0.00 4.40
2572 3421 6.942576 TGAGTAGAGCTATGTGATATGTGCTA 59.057 38.462 0.00 0.00 0.00 3.49
2573 3422 7.613411 TGAGTAGAGCTATGTGATATGTGCTAT 59.387 37.037 0.00 0.00 0.00 2.97
2574 3423 8.359875 AGTAGAGCTATGTGATATGTGCTATT 57.640 34.615 0.00 0.00 0.00 1.73
2575 3424 8.465999 AGTAGAGCTATGTGATATGTGCTATTC 58.534 37.037 0.00 0.00 0.00 1.75
2576 3425 7.479352 AGAGCTATGTGATATGTGCTATTCT 57.521 36.000 0.00 0.00 0.00 2.40
2577 3426 8.586879 AGAGCTATGTGATATGTGCTATTCTA 57.413 34.615 0.00 0.00 0.00 2.10
2578 3427 9.029368 AGAGCTATGTGATATGTGCTATTCTAA 57.971 33.333 0.00 0.00 0.00 2.10
2579 3428 9.645059 GAGCTATGTGATATGTGCTATTCTAAA 57.355 33.333 0.00 0.00 0.00 1.85
2593 3442 9.851043 GTGCTATTCTAAATAAAGTTAAGAGCG 57.149 33.333 0.00 0.00 0.00 5.03
2594 3443 9.595823 TGCTATTCTAAATAAAGTTAAGAGCGT 57.404 29.630 0.00 0.00 0.00 5.07
2595 3444 9.851043 GCTATTCTAAATAAAGTTAAGAGCGTG 57.149 33.333 0.00 0.00 0.00 5.34
2598 3447 9.871238 ATTCTAAATAAAGTTAAGAGCGTGAGA 57.129 29.630 0.00 0.00 0.00 3.27
2599 3448 9.701098 TTCTAAATAAAGTTAAGAGCGTGAGAA 57.299 29.630 0.00 0.00 0.00 2.87
2600 3449 9.136952 TCTAAATAAAGTTAAGAGCGTGAGAAC 57.863 33.333 0.00 0.00 0.00 3.01
2601 3450 6.723131 AATAAAGTTAAGAGCGTGAGAACC 57.277 37.500 0.00 0.00 0.00 3.62
2602 3451 4.338379 AAAGTTAAGAGCGTGAGAACCT 57.662 40.909 0.00 0.00 0.00 3.50
2603 3452 3.305398 AGTTAAGAGCGTGAGAACCTG 57.695 47.619 0.00 0.00 0.00 4.00
2604 3453 1.727335 GTTAAGAGCGTGAGAACCTGC 59.273 52.381 0.00 0.00 0.00 4.85
2605 3454 1.257743 TAAGAGCGTGAGAACCTGCT 58.742 50.000 0.00 0.00 41.11 4.24
2606 3455 4.177229 GAGCGTGAGAACCTGCTC 57.823 61.111 0.00 0.00 45.95 4.26
2607 3456 1.446966 GAGCGTGAGAACCTGCTCC 60.447 63.158 1.75 0.00 46.21 4.70
2608 3457 2.435059 GCGTGAGAACCTGCTCCC 60.435 66.667 0.00 0.00 33.95 4.30
2609 3458 2.266055 CGTGAGAACCTGCTCCCC 59.734 66.667 0.00 0.00 33.95 4.81
2610 3459 2.286523 CGTGAGAACCTGCTCCCCT 61.287 63.158 0.00 0.00 33.95 4.79
2611 3460 1.298014 GTGAGAACCTGCTCCCCTG 59.702 63.158 0.00 0.00 33.95 4.45
2612 3461 1.158466 TGAGAACCTGCTCCCCTGA 59.842 57.895 0.00 0.00 33.95 3.86
2613 3462 1.194781 TGAGAACCTGCTCCCCTGAC 61.195 60.000 0.00 0.00 33.95 3.51
2614 3463 1.152030 AGAACCTGCTCCCCTGACA 60.152 57.895 0.00 0.00 0.00 3.58
2615 3464 0.548682 AGAACCTGCTCCCCTGACAT 60.549 55.000 0.00 0.00 0.00 3.06
2616 3465 1.204146 GAACCTGCTCCCCTGACATA 58.796 55.000 0.00 0.00 0.00 2.29
2617 3466 1.139853 GAACCTGCTCCCCTGACATAG 59.860 57.143 0.00 0.00 0.00 2.23
2618 3467 1.341156 ACCTGCTCCCCTGACATAGC 61.341 60.000 0.00 0.00 35.51 2.97
2619 3468 1.053264 CCTGCTCCCCTGACATAGCT 61.053 60.000 0.00 0.00 35.95 3.32
2620 3469 0.106335 CTGCTCCCCTGACATAGCTG 59.894 60.000 0.00 0.00 35.95 4.24
2621 3470 1.227793 GCTCCCCTGACATAGCTGC 60.228 63.158 0.00 0.00 32.18 5.25
2622 3471 1.694133 GCTCCCCTGACATAGCTGCT 61.694 60.000 7.57 7.57 32.18 4.24
2623 3472 0.835941 CTCCCCTGACATAGCTGCTT 59.164 55.000 7.79 0.00 0.00 3.91
2624 3473 2.042464 CTCCCCTGACATAGCTGCTTA 58.958 52.381 7.79 0.00 0.00 3.09
2625 3474 2.435805 CTCCCCTGACATAGCTGCTTAA 59.564 50.000 7.79 0.00 0.00 1.85
2626 3475 3.048600 TCCCCTGACATAGCTGCTTAAT 58.951 45.455 7.79 0.00 0.00 1.40
2627 3476 3.071602 TCCCCTGACATAGCTGCTTAATC 59.928 47.826 7.79 3.61 0.00 1.75
2628 3477 3.406764 CCCTGACATAGCTGCTTAATCC 58.593 50.000 7.79 0.00 0.00 3.01
2629 3478 3.072184 CCCTGACATAGCTGCTTAATCCT 59.928 47.826 7.79 0.00 0.00 3.24
2630 3479 4.063689 CCTGACATAGCTGCTTAATCCTG 58.936 47.826 7.79 0.00 0.00 3.86
2631 3480 4.202295 CCTGACATAGCTGCTTAATCCTGA 60.202 45.833 7.79 0.00 0.00 3.86
2632 3481 5.357742 TGACATAGCTGCTTAATCCTGAA 57.642 39.130 7.79 0.00 0.00 3.02
2633 3482 5.363101 TGACATAGCTGCTTAATCCTGAAG 58.637 41.667 7.79 0.00 0.00 3.02
2634 3483 4.712476 ACATAGCTGCTTAATCCTGAAGG 58.288 43.478 7.79 0.00 0.00 3.46
2635 3484 2.725221 AGCTGCTTAATCCTGAAGGG 57.275 50.000 0.00 0.00 35.41 3.95
2636 3485 1.213926 AGCTGCTTAATCCTGAAGGGG 59.786 52.381 0.00 0.00 35.41 4.79
2637 3486 1.212935 GCTGCTTAATCCTGAAGGGGA 59.787 52.381 0.00 0.00 39.95 4.81
2638 3487 2.158549 GCTGCTTAATCCTGAAGGGGAT 60.159 50.000 0.00 0.00 46.96 3.85
2639 3488 3.484407 CTGCTTAATCCTGAAGGGGATG 58.516 50.000 0.00 0.00 44.50 3.51
2640 3489 2.852449 TGCTTAATCCTGAAGGGGATGT 59.148 45.455 0.00 0.00 44.50 3.06
2641 3490 3.217626 GCTTAATCCTGAAGGGGATGTG 58.782 50.000 0.00 0.00 44.50 3.21
2642 3491 3.825328 CTTAATCCTGAAGGGGATGTGG 58.175 50.000 0.00 0.00 44.50 4.17
2643 3492 0.929244 AATCCTGAAGGGGATGTGGG 59.071 55.000 0.00 0.00 44.50 4.61
2644 3493 0.995675 ATCCTGAAGGGGATGTGGGG 60.996 60.000 0.00 0.00 43.70 4.96
2645 3494 2.693871 CCTGAAGGGGATGTGGGGG 61.694 68.421 0.00 0.00 0.00 5.40
2646 3495 1.930656 CTGAAGGGGATGTGGGGGT 60.931 63.158 0.00 0.00 0.00 4.95
2647 3496 0.623324 CTGAAGGGGATGTGGGGGTA 60.623 60.000 0.00 0.00 0.00 3.69
2648 3497 0.623324 TGAAGGGGATGTGGGGGTAG 60.623 60.000 0.00 0.00 0.00 3.18
2649 3498 0.327191 GAAGGGGATGTGGGGGTAGA 60.327 60.000 0.00 0.00 0.00 2.59
2650 3499 0.350541 AAGGGGATGTGGGGGTAGAT 59.649 55.000 0.00 0.00 0.00 1.98
2651 3500 0.104409 AGGGGATGTGGGGGTAGATC 60.104 60.000 0.00 0.00 0.00 2.75
2652 3501 0.104409 GGGGATGTGGGGGTAGATCT 60.104 60.000 0.00 0.00 0.00 2.75
2653 3502 1.059913 GGGATGTGGGGGTAGATCTG 58.940 60.000 5.18 0.00 0.00 2.90
2654 3503 1.059913 GGATGTGGGGGTAGATCTGG 58.940 60.000 5.18 0.00 0.00 3.86
2655 3504 0.398318 GATGTGGGGGTAGATCTGGC 59.602 60.000 5.18 0.00 0.00 4.85
2656 3505 1.410850 ATGTGGGGGTAGATCTGGCG 61.411 60.000 5.18 0.00 0.00 5.69
2657 3506 2.445845 TGGGGGTAGATCTGGCGG 60.446 66.667 5.18 0.00 0.00 6.13
2658 3507 2.122989 GGGGGTAGATCTGGCGGA 60.123 66.667 5.18 0.00 0.00 5.54
2659 3508 2.210711 GGGGGTAGATCTGGCGGAG 61.211 68.421 5.18 0.00 0.00 4.63
2660 3509 2.210711 GGGGTAGATCTGGCGGAGG 61.211 68.421 5.18 0.00 0.00 4.30
2661 3510 2.210711 GGGTAGATCTGGCGGAGGG 61.211 68.421 5.18 0.00 0.00 4.30
2662 3511 2.737830 GTAGATCTGGCGGAGGGC 59.262 66.667 5.18 0.00 42.51 5.19
2664 3513 2.134287 TAGATCTGGCGGAGGGCAC 61.134 63.158 5.18 0.00 44.78 5.01
2665 3514 4.899239 GATCTGGCGGAGGGCACG 62.899 72.222 1.04 0.00 44.78 5.34
2688 3537 2.830370 GGCAGAGGCGAAATGGGG 60.830 66.667 0.00 0.00 42.47 4.96
2689 3538 2.044946 GCAGAGGCGAAATGGGGT 60.045 61.111 0.00 0.00 0.00 4.95
2690 3539 1.678970 GCAGAGGCGAAATGGGGTT 60.679 57.895 0.00 0.00 0.00 4.11
2691 3540 0.393808 GCAGAGGCGAAATGGGGTTA 60.394 55.000 0.00 0.00 0.00 2.85
2692 3541 1.668419 CAGAGGCGAAATGGGGTTAG 58.332 55.000 0.00 0.00 0.00 2.34
2693 3542 1.065418 CAGAGGCGAAATGGGGTTAGT 60.065 52.381 0.00 0.00 0.00 2.24
2694 3543 1.065418 AGAGGCGAAATGGGGTTAGTG 60.065 52.381 0.00 0.00 0.00 2.74
2695 3544 0.034477 AGGCGAAATGGGGTTAGTGG 60.034 55.000 0.00 0.00 0.00 4.00
2696 3545 0.323087 GGCGAAATGGGGTTAGTGGT 60.323 55.000 0.00 0.00 0.00 4.16
2697 3546 1.541379 GCGAAATGGGGTTAGTGGTT 58.459 50.000 0.00 0.00 0.00 3.67
2698 3547 1.201414 GCGAAATGGGGTTAGTGGTTG 59.799 52.381 0.00 0.00 0.00 3.77
2699 3548 1.816224 CGAAATGGGGTTAGTGGTTGG 59.184 52.381 0.00 0.00 0.00 3.77
2700 3549 2.553466 CGAAATGGGGTTAGTGGTTGGA 60.553 50.000 0.00 0.00 0.00 3.53
2701 3550 2.899303 AATGGGGTTAGTGGTTGGAG 57.101 50.000 0.00 0.00 0.00 3.86
2702 3551 0.999712 ATGGGGTTAGTGGTTGGAGG 59.000 55.000 0.00 0.00 0.00 4.30
2703 3552 1.137594 TGGGGTTAGTGGTTGGAGGG 61.138 60.000 0.00 0.00 0.00 4.30
2704 3553 1.001269 GGGTTAGTGGTTGGAGGGC 60.001 63.158 0.00 0.00 0.00 5.19
2705 3554 1.765074 GGTTAGTGGTTGGAGGGCA 59.235 57.895 0.00 0.00 0.00 5.36
2706 3555 0.331616 GGTTAGTGGTTGGAGGGCAT 59.668 55.000 0.00 0.00 0.00 4.40
2707 3556 1.463674 GTTAGTGGTTGGAGGGCATG 58.536 55.000 0.00 0.00 0.00 4.06
2708 3557 1.004277 GTTAGTGGTTGGAGGGCATGA 59.996 52.381 0.00 0.00 0.00 3.07
2709 3558 0.618458 TAGTGGTTGGAGGGCATGAC 59.382 55.000 0.00 0.00 0.00 3.06
2710 3559 2.040544 GTGGTTGGAGGGCATGACG 61.041 63.158 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.261572 GCACAAGGATTTTAACAGCACAGA 60.262 41.667 0.00 0.00 0.00 3.41
1 2 3.983344 GCACAAGGATTTTAACAGCACAG 59.017 43.478 0.00 0.00 0.00 3.66
2 3 3.382865 TGCACAAGGATTTTAACAGCACA 59.617 39.130 0.00 0.00 0.00 4.57
3 4 3.976169 TGCACAAGGATTTTAACAGCAC 58.024 40.909 0.00 0.00 0.00 4.40
4 5 4.280425 TGATGCACAAGGATTTTAACAGCA 59.720 37.500 0.00 0.00 0.00 4.41
5 6 4.808558 TGATGCACAAGGATTTTAACAGC 58.191 39.130 0.00 0.00 0.00 4.40
6 7 6.258230 TCTGATGCACAAGGATTTTAACAG 57.742 37.500 0.00 0.00 0.00 3.16
7 8 6.839124 ATCTGATGCACAAGGATTTTAACA 57.161 33.333 0.00 0.00 0.00 2.41
8 9 9.294030 CTTAATCTGATGCACAAGGATTTTAAC 57.706 33.333 9.99 0.00 30.04 2.01
9 10 9.241919 TCTTAATCTGATGCACAAGGATTTTAA 57.758 29.630 9.99 4.67 30.04 1.52
10 11 8.806429 TCTTAATCTGATGCACAAGGATTTTA 57.194 30.769 9.99 2.06 30.04 1.52
11 12 7.147949 CCTCTTAATCTGATGCACAAGGATTTT 60.148 37.037 9.99 0.00 30.04 1.82
12 13 6.320672 CCTCTTAATCTGATGCACAAGGATTT 59.679 38.462 9.99 1.23 30.04 2.17
13 14 5.826737 CCTCTTAATCTGATGCACAAGGATT 59.173 40.000 0.00 0.00 31.49 3.01
14 15 5.104193 ACCTCTTAATCTGATGCACAAGGAT 60.104 40.000 11.17 0.00 0.00 3.24
15 16 4.225942 ACCTCTTAATCTGATGCACAAGGA 59.774 41.667 11.17 0.00 0.00 3.36
16 17 4.521146 ACCTCTTAATCTGATGCACAAGG 58.479 43.478 0.00 0.00 0.00 3.61
17 18 6.765036 ACATACCTCTTAATCTGATGCACAAG 59.235 38.462 0.00 0.00 0.00 3.16
18 19 6.539826 CACATACCTCTTAATCTGATGCACAA 59.460 38.462 0.00 0.00 0.00 3.33
19 20 6.051074 CACATACCTCTTAATCTGATGCACA 58.949 40.000 0.00 0.00 0.00 4.57
20 21 6.051717 ACACATACCTCTTAATCTGATGCAC 58.948 40.000 0.00 0.00 0.00 4.57
21 22 6.239217 ACACATACCTCTTAATCTGATGCA 57.761 37.500 0.00 0.00 0.00 3.96
22 23 7.437748 ACTACACATACCTCTTAATCTGATGC 58.562 38.462 0.00 0.00 0.00 3.91
30 31 9.577110 CACGAATTTACTACACATACCTCTTAA 57.423 33.333 0.00 0.00 0.00 1.85
31 32 7.703621 GCACGAATTTACTACACATACCTCTTA 59.296 37.037 0.00 0.00 0.00 2.10
32 33 6.534079 GCACGAATTTACTACACATACCTCTT 59.466 38.462 0.00 0.00 0.00 2.85
33 34 6.040878 GCACGAATTTACTACACATACCTCT 58.959 40.000 0.00 0.00 0.00 3.69
34 35 6.040878 AGCACGAATTTACTACACATACCTC 58.959 40.000 0.00 0.00 0.00 3.85
35 36 5.974108 AGCACGAATTTACTACACATACCT 58.026 37.500 0.00 0.00 0.00 3.08
36 37 6.238022 GGAAGCACGAATTTACTACACATACC 60.238 42.308 0.00 0.00 0.00 2.73
37 38 6.507456 CGGAAGCACGAATTTACTACACATAC 60.507 42.308 0.00 0.00 35.47 2.39
38 39 5.517411 CGGAAGCACGAATTTACTACACATA 59.483 40.000 0.00 0.00 35.47 2.29
39 40 4.328983 CGGAAGCACGAATTTACTACACAT 59.671 41.667 0.00 0.00 35.47 3.21
40 41 3.676172 CGGAAGCACGAATTTACTACACA 59.324 43.478 0.00 0.00 35.47 3.72
41 42 4.240883 CGGAAGCACGAATTTACTACAC 57.759 45.455 0.00 0.00 35.47 2.90
61 62 8.337532 TGTCAATCAATTATTCAGTAAGATGCG 58.662 33.333 0.00 0.00 0.00 4.73
72 73 7.267128 TGCCCTTCAATGTCAATCAATTATTC 58.733 34.615 0.00 0.00 0.00 1.75
79 80 3.972133 AGATGCCCTTCAATGTCAATCA 58.028 40.909 0.00 0.00 0.00 2.57
86 87 4.518211 GGACAAGATAGATGCCCTTCAATG 59.482 45.833 0.00 0.00 0.00 2.82
101 102 4.641989 GCACATCTTTACCATGGACAAGAT 59.358 41.667 25.41 25.41 36.59 2.40
164 165 0.457337 ATCCACCGCGACTTAACGTC 60.457 55.000 8.23 0.00 39.33 4.34
173 174 2.748647 TGACTCGATCCACCGCGA 60.749 61.111 8.23 0.00 35.01 5.87
192 193 3.723348 GAACCGCGGCAGGTCAAC 61.723 66.667 28.58 3.85 45.21 3.18
222 223 3.075005 GTGCCTCGACCTGCCCTA 61.075 66.667 0.00 0.00 0.00 3.53
260 261 1.577328 ATGGAAGTTCACTTGCCGCG 61.577 55.000 8.55 0.00 42.66 6.46
261 262 0.169009 GATGGAAGTTCACTTGCCGC 59.831 55.000 8.55 0.00 42.66 6.53
277 278 2.093973 AGAAACCGTCCAGCTAGTGATG 60.094 50.000 0.00 0.00 0.00 3.07
315 316 1.529152 GGTTTTAACAGCCGGGTGGG 61.529 60.000 34.98 14.06 39.58 4.61
317 318 0.596082 CAGGTTTTAACAGCCGGGTG 59.404 55.000 31.30 31.30 0.00 4.61
318 319 0.538746 CCAGGTTTTAACAGCCGGGT 60.539 55.000 0.00 0.00 33.79 5.28
319 320 0.250989 TCCAGGTTTTAACAGCCGGG 60.251 55.000 2.18 0.00 38.68 5.73
321 322 1.472480 CCATCCAGGTTTTAACAGCCG 59.528 52.381 0.00 0.00 0.00 5.52
322 323 1.204704 GCCATCCAGGTTTTAACAGCC 59.795 52.381 0.00 0.00 40.61 4.85
323 324 1.892474 TGCCATCCAGGTTTTAACAGC 59.108 47.619 0.00 0.00 40.61 4.40
324 325 6.469782 AATATGCCATCCAGGTTTTAACAG 57.530 37.500 0.00 0.00 40.61 3.16
325 326 6.040391 GCTAATATGCCATCCAGGTTTTAACA 59.960 38.462 0.00 0.00 40.61 2.41
326 327 6.265422 AGCTAATATGCCATCCAGGTTTTAAC 59.735 38.462 0.00 0.00 40.61 2.01
327 328 6.372931 AGCTAATATGCCATCCAGGTTTTAA 58.627 36.000 0.00 0.00 40.61 1.52
328 329 5.952387 AGCTAATATGCCATCCAGGTTTTA 58.048 37.500 0.00 0.00 40.61 1.52
329 330 4.808042 AGCTAATATGCCATCCAGGTTTT 58.192 39.130 0.00 0.00 40.61 2.43
330 331 4.459852 AGCTAATATGCCATCCAGGTTT 57.540 40.909 0.00 0.00 40.61 3.27
331 332 4.147321 CAAGCTAATATGCCATCCAGGTT 58.853 43.478 0.00 0.00 40.61 3.50
332 333 3.759581 CAAGCTAATATGCCATCCAGGT 58.240 45.455 0.00 0.00 40.61 4.00
333 334 2.490903 GCAAGCTAATATGCCATCCAGG 59.509 50.000 0.00 0.00 36.56 4.45
334 335 3.190744 CAGCAAGCTAATATGCCATCCAG 59.809 47.826 4.49 0.00 43.57 3.86
335 336 3.151554 CAGCAAGCTAATATGCCATCCA 58.848 45.455 4.49 0.00 43.57 3.41
336 337 2.094854 GCAGCAAGCTAATATGCCATCC 60.095 50.000 4.49 0.00 43.57 3.51
337 338 2.555325 TGCAGCAAGCTAATATGCCATC 59.445 45.455 4.49 0.00 45.94 3.51
338 339 2.589720 TGCAGCAAGCTAATATGCCAT 58.410 42.857 4.49 0.00 45.94 4.40
339 340 2.055684 TGCAGCAAGCTAATATGCCA 57.944 45.000 4.49 0.00 45.94 4.92
340 341 2.413765 CGATGCAGCAAGCTAATATGCC 60.414 50.000 1.53 0.00 45.94 4.40
341 342 2.413765 CCGATGCAGCAAGCTAATATGC 60.414 50.000 1.53 0.00 45.94 3.14
342 343 3.069289 TCCGATGCAGCAAGCTAATATG 58.931 45.455 1.53 0.00 45.94 1.78
343 344 3.407424 TCCGATGCAGCAAGCTAATAT 57.593 42.857 1.53 0.00 45.94 1.28
344 345 2.908688 TCCGATGCAGCAAGCTAATA 57.091 45.000 1.53 0.00 45.94 0.98
345 346 2.042686 TTCCGATGCAGCAAGCTAAT 57.957 45.000 1.53 0.00 45.94 1.73
346 347 1.672363 CATTCCGATGCAGCAAGCTAA 59.328 47.619 1.53 0.00 45.94 3.09
354 355 3.251729 CCTGGTTTATCATTCCGATGCAG 59.748 47.826 0.00 0.00 35.39 4.41
362 363 2.354821 GGTGACGCCTGGTTTATCATTC 59.645 50.000 0.00 0.00 0.00 2.67
375 376 4.643387 ACCAGCTTGGGTGACGCC 62.643 66.667 0.00 0.00 43.37 5.68
376 377 3.050275 GACCAGCTTGGGTGACGC 61.050 66.667 0.00 0.00 43.37 5.19
377 378 1.003355 ATGACCAGCTTGGGTGACG 60.003 57.895 0.00 0.00 43.37 4.35
378 379 0.962356 CCATGACCAGCTTGGGTGAC 60.962 60.000 0.00 0.00 43.37 3.67
379 380 1.379916 CCATGACCAGCTTGGGTGA 59.620 57.895 0.00 0.00 43.37 4.02
395 407 8.693120 TTTTACTTGTCACAACAATATACCCA 57.307 30.769 0.00 0.00 44.18 4.51
430 442 9.816354 TCGATTCATTCAATTATGTGTAGAGAA 57.184 29.630 0.00 0.00 0.00 2.87
434 446 9.254133 AGAGTCGATTCATTCAATTATGTGTAG 57.746 33.333 10.80 0.00 0.00 2.74
450 479 6.477360 GGAGGACTATTTGAAAGAGTCGATTC 59.523 42.308 21.89 18.39 40.46 2.52
467 496 5.130705 TGAGAGCTAGATTTGGAGGACTA 57.869 43.478 0.00 0.00 0.00 2.59
469 498 3.492482 GCTGAGAGCTAGATTTGGAGGAC 60.492 52.174 0.00 0.00 38.45 3.85
470 499 2.697751 GCTGAGAGCTAGATTTGGAGGA 59.302 50.000 0.00 0.00 38.45 3.71
471 500 3.110447 GCTGAGAGCTAGATTTGGAGG 57.890 52.381 0.00 0.00 38.45 4.30
488 527 3.486375 CGATGTATCCAAACAAGCAGCTG 60.486 47.826 10.11 10.11 32.02 4.24
489 528 2.679837 CGATGTATCCAAACAAGCAGCT 59.320 45.455 0.00 0.00 32.02 4.24
490 529 2.223340 CCGATGTATCCAAACAAGCAGC 60.223 50.000 0.00 0.00 32.02 5.25
491 530 2.355756 CCCGATGTATCCAAACAAGCAG 59.644 50.000 0.00 0.00 32.02 4.24
492 531 2.026729 TCCCGATGTATCCAAACAAGCA 60.027 45.455 0.00 0.00 32.02 3.91
493 532 2.639065 TCCCGATGTATCCAAACAAGC 58.361 47.619 0.00 0.00 32.02 4.01
506 545 3.884693 TCATCAATCCACATTTCCCGATG 59.115 43.478 0.00 0.00 0.00 3.84
514 553 5.449588 GCTCGTCATTTCATCAATCCACATT 60.450 40.000 0.00 0.00 0.00 2.71
526 565 2.493675 AGCACTCTAGCTCGTCATTTCA 59.506 45.455 0.00 0.00 42.18 2.69
529 568 3.885901 TGATAGCACTCTAGCTCGTCATT 59.114 43.478 0.00 0.00 45.26 2.57
530 569 3.481453 TGATAGCACTCTAGCTCGTCAT 58.519 45.455 0.00 0.00 45.26 3.06
532 571 4.225984 CAATGATAGCACTCTAGCTCGTC 58.774 47.826 0.00 0.00 45.26 4.20
564 681 2.633488 GATAGTGGCGCTCTCCTTTTT 58.367 47.619 7.64 0.00 0.00 1.94
566 683 0.103208 CGATAGTGGCGCTCTCCTTT 59.897 55.000 7.64 0.00 0.00 3.11
567 684 1.736586 CGATAGTGGCGCTCTCCTT 59.263 57.895 7.64 0.00 0.00 3.36
568 685 3.437867 CGATAGTGGCGCTCTCCT 58.562 61.111 7.64 0.30 0.00 3.69
583 700 9.377312 TCATCATCATAGTAACAAAATGAACGA 57.623 29.630 0.00 0.00 33.60 3.85
584 701 9.986833 TTCATCATCATAGTAACAAAATGAACG 57.013 29.630 0.00 0.00 33.60 3.95
587 704 9.986833 CGTTTCATCATCATAGTAACAAAATGA 57.013 29.630 0.00 0.00 34.35 2.57
588 705 8.736742 GCGTTTCATCATCATAGTAACAAAATG 58.263 33.333 0.00 0.00 0.00 2.32
589 706 8.677300 AGCGTTTCATCATCATAGTAACAAAAT 58.323 29.630 0.00 0.00 0.00 1.82
590 707 8.039603 AGCGTTTCATCATCATAGTAACAAAA 57.960 30.769 0.00 0.00 0.00 2.44
591 708 7.609760 AGCGTTTCATCATCATAGTAACAAA 57.390 32.000 0.00 0.00 0.00 2.83
592 709 7.438160 CCTAGCGTTTCATCATCATAGTAACAA 59.562 37.037 0.00 0.00 0.00 2.83
593 710 6.923508 CCTAGCGTTTCATCATCATAGTAACA 59.076 38.462 0.00 0.00 0.00 2.41
594 711 6.366332 CCCTAGCGTTTCATCATCATAGTAAC 59.634 42.308 0.00 0.00 0.00 2.50
595 712 6.455647 CCCTAGCGTTTCATCATCATAGTAA 58.544 40.000 0.00 0.00 0.00 2.24
596 713 5.566826 GCCCTAGCGTTTCATCATCATAGTA 60.567 44.000 0.00 0.00 0.00 1.82
597 714 4.800914 GCCCTAGCGTTTCATCATCATAGT 60.801 45.833 0.00 0.00 0.00 2.12
598 715 3.681897 GCCCTAGCGTTTCATCATCATAG 59.318 47.826 0.00 0.00 0.00 2.23
681 806 1.077005 CCAGGTTGGAGATCCCCAAAA 59.923 52.381 10.69 0.00 46.68 2.44
683 808 1.863155 GCCAGGTTGGAGATCCCCAA 61.863 60.000 4.27 4.27 40.96 4.12
824 949 3.827898 CACGAGGAGAGGCCGGAC 61.828 72.222 5.05 0.00 43.43 4.79
829 954 6.094061 GTGATAAATATACACGAGGAGAGGC 58.906 44.000 0.00 0.00 0.00 4.70
831 960 7.455641 AGGTGATAAATATACACGAGGAGAG 57.544 40.000 0.00 0.00 35.68 3.20
841 970 3.858238 GCTCGGCGAGGTGATAAATATAC 59.142 47.826 35.03 12.25 0.00 1.47
845 974 0.464036 TGCTCGGCGAGGTGATAAAT 59.536 50.000 35.03 0.00 0.00 1.40
846 975 0.179111 CTGCTCGGCGAGGTGATAAA 60.179 55.000 35.03 0.00 0.00 1.40
897 1026 1.663702 GAGACGTCGGTGTGTTGGG 60.664 63.158 10.46 0.00 0.00 4.12
903 1032 0.959372 CAGGTAGGAGACGTCGGTGT 60.959 60.000 10.46 0.00 0.00 4.16
996 1128 4.418328 TCCGGGGCGTCCATTTGG 62.418 66.667 9.07 3.63 34.36 3.28
1074 1206 2.789203 GCCGATGACGACGTTGAGC 61.789 63.158 10.51 1.54 42.66 4.26
1167 1308 1.153628 CCGGTCGTCATGGTCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
1457 1604 2.675423 TCACCTCCGTCTCCGTGG 60.675 66.667 0.00 0.00 33.68 4.94
1787 1934 0.531200 ACGGCAAGACCACTAGCTAC 59.469 55.000 0.00 0.00 39.03 3.58
1831 1986 2.598632 GCATCTCATACGCGGCACC 61.599 63.158 12.47 0.00 0.00 5.01
1848 2003 1.545582 TCCAAATTAACCTGCAGCAGC 59.454 47.619 17.81 0.00 42.57 5.25
1849 2004 3.181483 GGATCCAAATTAACCTGCAGCAG 60.181 47.826 16.23 16.23 0.00 4.24
1850 2005 2.760092 GGATCCAAATTAACCTGCAGCA 59.240 45.455 8.66 0.00 0.00 4.41
1958 2119 2.355193 GCTCTTCTCCCACGCCTCT 61.355 63.158 0.00 0.00 0.00 3.69
2064 2229 3.613432 GCTCCTTTTTGCAAGATGTCCTG 60.613 47.826 0.00 0.00 0.00 3.86
2195 2363 5.939883 AGGCAAAGCTTTCAAAAGAAAAACT 59.060 32.000 9.23 0.00 38.28 2.66
2196 2364 6.128309 TGAGGCAAAGCTTTCAAAAGAAAAAC 60.128 34.615 9.23 0.00 38.28 2.43
2269 2447 3.395639 CTTCCTGTGTTGTAGCGGTTTA 58.604 45.455 0.00 0.00 0.00 2.01
2332 2510 0.818040 GGACCCAGCTTCACAACGTT 60.818 55.000 0.00 0.00 0.00 3.99
2337 2515 0.984230 CTTAGGGACCCAGCTTCACA 59.016 55.000 14.60 0.00 0.00 3.58
2340 2518 1.628846 TGAACTTAGGGACCCAGCTTC 59.371 52.381 14.60 8.15 0.00 3.86
2456 3305 9.775854 AGATTATAATGAATGAGTTGTCCTCTG 57.224 33.333 1.78 0.00 41.11 3.35
2457 3306 9.995003 GAGATTATAATGAATGAGTTGTCCTCT 57.005 33.333 1.78 0.00 41.11 3.69
2458 3307 9.770097 TGAGATTATAATGAATGAGTTGTCCTC 57.230 33.333 1.78 0.00 40.89 3.71
2459 3308 9.775854 CTGAGATTATAATGAATGAGTTGTCCT 57.224 33.333 1.78 0.00 0.00 3.85
2460 3309 9.553064 ACTGAGATTATAATGAATGAGTTGTCC 57.447 33.333 1.78 0.00 0.00 4.02
2462 3311 9.334947 CCACTGAGATTATAATGAATGAGTTGT 57.665 33.333 1.78 0.00 0.00 3.32
2463 3312 9.551734 TCCACTGAGATTATAATGAATGAGTTG 57.448 33.333 1.78 0.00 0.00 3.16
2464 3313 9.553064 GTCCACTGAGATTATAATGAATGAGTT 57.447 33.333 1.78 0.00 0.00 3.01
2465 3314 8.932610 AGTCCACTGAGATTATAATGAATGAGT 58.067 33.333 1.78 0.00 0.00 3.41
2466 3315 9.775854 AAGTCCACTGAGATTATAATGAATGAG 57.224 33.333 1.78 0.00 0.00 2.90
2467 3316 9.770097 GAAGTCCACTGAGATTATAATGAATGA 57.230 33.333 1.78 0.00 0.00 2.57
2468 3317 8.997323 GGAAGTCCACTGAGATTATAATGAATG 58.003 37.037 1.78 0.00 35.64 2.67
2469 3318 8.717717 TGGAAGTCCACTGAGATTATAATGAAT 58.282 33.333 1.78 0.00 42.01 2.57
2470 3319 8.089625 TGGAAGTCCACTGAGATTATAATGAA 57.910 34.615 1.78 0.00 42.01 2.57
2471 3320 7.565029 TCTGGAAGTCCACTGAGATTATAATGA 59.435 37.037 1.78 0.00 42.01 2.57
2472 3321 7.655328 GTCTGGAAGTCCACTGAGATTATAATG 59.345 40.741 1.78 0.00 42.01 1.90
2473 3322 7.345653 TGTCTGGAAGTCCACTGAGATTATAAT 59.654 37.037 0.00 0.00 42.01 1.28
2474 3323 6.667848 TGTCTGGAAGTCCACTGAGATTATAA 59.332 38.462 0.00 0.00 42.01 0.98
2475 3324 6.194967 TGTCTGGAAGTCCACTGAGATTATA 58.805 40.000 0.00 0.00 42.01 0.98
2476 3325 5.026121 TGTCTGGAAGTCCACTGAGATTAT 58.974 41.667 0.00 0.00 42.01 1.28
2477 3326 4.416516 TGTCTGGAAGTCCACTGAGATTA 58.583 43.478 0.00 0.00 42.01 1.75
2478 3327 3.242867 TGTCTGGAAGTCCACTGAGATT 58.757 45.455 0.00 0.00 42.01 2.40
2479 3328 2.894731 TGTCTGGAAGTCCACTGAGAT 58.105 47.619 0.00 0.00 42.01 2.75
2480 3329 2.381752 TGTCTGGAAGTCCACTGAGA 57.618 50.000 0.00 0.00 42.01 3.27
2481 3330 2.289320 CCTTGTCTGGAAGTCCACTGAG 60.289 54.545 0.00 0.00 42.01 3.35
2482 3331 1.694150 CCTTGTCTGGAAGTCCACTGA 59.306 52.381 0.00 0.00 42.01 3.41
2483 3332 1.271054 CCCTTGTCTGGAAGTCCACTG 60.271 57.143 0.00 0.00 42.01 3.66
2484 3333 1.059913 CCCTTGTCTGGAAGTCCACT 58.940 55.000 0.00 0.00 42.01 4.00
2485 3334 1.002544 CTCCCTTGTCTGGAAGTCCAC 59.997 57.143 0.00 0.00 42.01 4.02
2486 3335 1.352083 CTCCCTTGTCTGGAAGTCCA 58.648 55.000 0.00 0.00 45.30 4.02
2487 3336 1.002544 CACTCCCTTGTCTGGAAGTCC 59.997 57.143 0.00 0.00 33.76 3.85
2488 3337 1.002544 CCACTCCCTTGTCTGGAAGTC 59.997 57.143 0.00 0.00 33.76 3.01
2489 3338 1.059913 CCACTCCCTTGTCTGGAAGT 58.940 55.000 0.00 0.00 33.76 3.01
2490 3339 0.326264 CCCACTCCCTTGTCTGGAAG 59.674 60.000 0.00 0.00 0.00 3.46
2491 3340 0.104672 TCCCACTCCCTTGTCTGGAA 60.105 55.000 0.00 0.00 0.00 3.53
2492 3341 0.104672 TTCCCACTCCCTTGTCTGGA 60.105 55.000 0.00 0.00 0.00 3.86
2493 3342 0.771127 TTTCCCACTCCCTTGTCTGG 59.229 55.000 0.00 0.00 0.00 3.86
2494 3343 2.656947 TTTTCCCACTCCCTTGTCTG 57.343 50.000 0.00 0.00 0.00 3.51
2495 3344 2.514160 ACTTTTTCCCACTCCCTTGTCT 59.486 45.455 0.00 0.00 0.00 3.41
2496 3345 2.623416 CACTTTTTCCCACTCCCTTGTC 59.377 50.000 0.00 0.00 0.00 3.18
2497 3346 2.243736 TCACTTTTTCCCACTCCCTTGT 59.756 45.455 0.00 0.00 0.00 3.16
2498 3347 2.887152 CTCACTTTTTCCCACTCCCTTG 59.113 50.000 0.00 0.00 0.00 3.61
2499 3348 2.753168 GCTCACTTTTTCCCACTCCCTT 60.753 50.000 0.00 0.00 0.00 3.95
2500 3349 1.202940 GCTCACTTTTTCCCACTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
2501 3350 1.248486 GCTCACTTTTTCCCACTCCC 58.752 55.000 0.00 0.00 0.00 4.30
2502 3351 1.981256 TGCTCACTTTTTCCCACTCC 58.019 50.000 0.00 0.00 0.00 3.85
2503 3352 4.142160 ACTTTTGCTCACTTTTTCCCACTC 60.142 41.667 0.00 0.00 0.00 3.51
2504 3353 3.769300 ACTTTTGCTCACTTTTTCCCACT 59.231 39.130 0.00 0.00 0.00 4.00
2505 3354 4.123497 ACTTTTGCTCACTTTTTCCCAC 57.877 40.909 0.00 0.00 0.00 4.61
2506 3355 4.817318 AACTTTTGCTCACTTTTTCCCA 57.183 36.364 0.00 0.00 0.00 4.37
2507 3356 7.603963 TTTTAACTTTTGCTCACTTTTTCCC 57.396 32.000 0.00 0.00 0.00 3.97
2508 3357 7.686529 CGTTTTTAACTTTTGCTCACTTTTTCC 59.313 33.333 0.00 0.00 0.00 3.13
2509 3358 8.218441 ACGTTTTTAACTTTTGCTCACTTTTTC 58.782 29.630 0.00 0.00 0.00 2.29
2510 3359 8.007152 CACGTTTTTAACTTTTGCTCACTTTTT 58.993 29.630 0.00 0.00 0.00 1.94
2511 3360 7.359681 CCACGTTTTTAACTTTTGCTCACTTTT 60.360 33.333 0.00 0.00 0.00 2.27
2512 3361 6.090223 CCACGTTTTTAACTTTTGCTCACTTT 59.910 34.615 0.00 0.00 0.00 2.66
2513 3362 5.575218 CCACGTTTTTAACTTTTGCTCACTT 59.425 36.000 0.00 0.00 0.00 3.16
2514 3363 5.099575 CCACGTTTTTAACTTTTGCTCACT 58.900 37.500 0.00 0.00 0.00 3.41
2515 3364 4.266739 CCCACGTTTTTAACTTTTGCTCAC 59.733 41.667 0.00 0.00 0.00 3.51
2516 3365 4.425520 CCCACGTTTTTAACTTTTGCTCA 58.574 39.130 0.00 0.00 0.00 4.26
2517 3366 3.799963 CCCCACGTTTTTAACTTTTGCTC 59.200 43.478 0.00 0.00 0.00 4.26
2518 3367 3.447944 TCCCCACGTTTTTAACTTTTGCT 59.552 39.130 0.00 0.00 0.00 3.91
2519 3368 3.552699 GTCCCCACGTTTTTAACTTTTGC 59.447 43.478 0.00 0.00 0.00 3.68
2520 3369 4.745649 TGTCCCCACGTTTTTAACTTTTG 58.254 39.130 0.00 0.00 0.00 2.44
2521 3370 5.402997 TTGTCCCCACGTTTTTAACTTTT 57.597 34.783 0.00 0.00 0.00 2.27
2522 3371 5.402997 TTTGTCCCCACGTTTTTAACTTT 57.597 34.783 0.00 0.00 0.00 2.66
2523 3372 5.601583 ATTTGTCCCCACGTTTTTAACTT 57.398 34.783 0.00 0.00 0.00 2.66
2524 3373 6.490721 TCATATTTGTCCCCACGTTTTTAACT 59.509 34.615 0.00 0.00 0.00 2.24
2525 3374 6.679843 TCATATTTGTCCCCACGTTTTTAAC 58.320 36.000 0.00 0.00 0.00 2.01
2526 3375 6.490721 ACTCATATTTGTCCCCACGTTTTTAA 59.509 34.615 0.00 0.00 0.00 1.52
2527 3376 6.005198 ACTCATATTTGTCCCCACGTTTTTA 58.995 36.000 0.00 0.00 0.00 1.52
2528 3377 4.830600 ACTCATATTTGTCCCCACGTTTTT 59.169 37.500 0.00 0.00 0.00 1.94
2529 3378 4.403734 ACTCATATTTGTCCCCACGTTTT 58.596 39.130 0.00 0.00 0.00 2.43
2530 3379 4.028993 ACTCATATTTGTCCCCACGTTT 57.971 40.909 0.00 0.00 0.00 3.60
2531 3380 3.713826 ACTCATATTTGTCCCCACGTT 57.286 42.857 0.00 0.00 0.00 3.99
2532 3381 4.028131 TCTACTCATATTTGTCCCCACGT 58.972 43.478 0.00 0.00 0.00 4.49
2533 3382 4.621991 CTCTACTCATATTTGTCCCCACG 58.378 47.826 0.00 0.00 0.00 4.94
2534 3383 4.101741 AGCTCTACTCATATTTGTCCCCAC 59.898 45.833 0.00 0.00 0.00 4.61
2535 3384 4.298626 AGCTCTACTCATATTTGTCCCCA 58.701 43.478 0.00 0.00 0.00 4.96
2536 3385 4.965200 AGCTCTACTCATATTTGTCCCC 57.035 45.455 0.00 0.00 0.00 4.81
2537 3386 6.870965 CACATAGCTCTACTCATATTTGTCCC 59.129 42.308 0.00 0.00 0.00 4.46
2538 3387 7.661968 TCACATAGCTCTACTCATATTTGTCC 58.338 38.462 0.00 0.00 0.00 4.02
2544 3393 8.412456 GCACATATCACATAGCTCTACTCATAT 58.588 37.037 0.00 0.00 0.00 1.78
2545 3394 7.613411 AGCACATATCACATAGCTCTACTCATA 59.387 37.037 0.00 0.00 0.00 2.15
2546 3395 6.436847 AGCACATATCACATAGCTCTACTCAT 59.563 38.462 0.00 0.00 0.00 2.90
2547 3396 5.772169 AGCACATATCACATAGCTCTACTCA 59.228 40.000 0.00 0.00 0.00 3.41
2548 3397 6.266168 AGCACATATCACATAGCTCTACTC 57.734 41.667 0.00 0.00 0.00 2.59
2549 3398 7.953005 ATAGCACATATCACATAGCTCTACT 57.047 36.000 0.00 0.00 33.83 2.57
2550 3399 8.465999 AGAATAGCACATATCACATAGCTCTAC 58.534 37.037 0.00 0.00 33.83 2.59
2551 3400 8.586879 AGAATAGCACATATCACATAGCTCTA 57.413 34.615 0.00 0.00 33.83 2.43
2552 3401 7.479352 AGAATAGCACATATCACATAGCTCT 57.521 36.000 0.00 0.00 33.83 4.09
2553 3402 9.645059 TTTAGAATAGCACATATCACATAGCTC 57.355 33.333 0.00 0.00 33.83 4.09
2567 3416 9.851043 CGCTCTTAACTTTATTTAGAATAGCAC 57.149 33.333 0.00 0.00 0.00 4.40
2568 3417 9.595823 ACGCTCTTAACTTTATTTAGAATAGCA 57.404 29.630 0.00 0.00 0.00 3.49
2569 3418 9.851043 CACGCTCTTAACTTTATTTAGAATAGC 57.149 33.333 0.00 0.00 0.00 2.97
2572 3421 9.871238 TCTCACGCTCTTAACTTTATTTAGAAT 57.129 29.630 0.00 0.00 0.00 2.40
2573 3422 9.701098 TTCTCACGCTCTTAACTTTATTTAGAA 57.299 29.630 0.00 0.00 0.00 2.10
2574 3423 9.136952 GTTCTCACGCTCTTAACTTTATTTAGA 57.863 33.333 0.00 0.00 0.00 2.10
2575 3424 8.381387 GGTTCTCACGCTCTTAACTTTATTTAG 58.619 37.037 0.00 0.00 0.00 1.85
2576 3425 8.092687 AGGTTCTCACGCTCTTAACTTTATTTA 58.907 33.333 0.00 0.00 0.00 1.40
2577 3426 6.935208 AGGTTCTCACGCTCTTAACTTTATTT 59.065 34.615 0.00 0.00 0.00 1.40
2578 3427 6.369065 CAGGTTCTCACGCTCTTAACTTTATT 59.631 38.462 0.00 0.00 0.00 1.40
2579 3428 5.869888 CAGGTTCTCACGCTCTTAACTTTAT 59.130 40.000 0.00 0.00 0.00 1.40
2580 3429 5.227908 CAGGTTCTCACGCTCTTAACTTTA 58.772 41.667 0.00 0.00 0.00 1.85
2581 3430 4.058817 CAGGTTCTCACGCTCTTAACTTT 58.941 43.478 0.00 0.00 0.00 2.66
2582 3431 3.654414 CAGGTTCTCACGCTCTTAACTT 58.346 45.455 0.00 0.00 0.00 2.66
2583 3432 2.610727 GCAGGTTCTCACGCTCTTAACT 60.611 50.000 0.00 0.00 0.00 2.24
2584 3433 1.727335 GCAGGTTCTCACGCTCTTAAC 59.273 52.381 0.00 0.00 0.00 2.01
2585 3434 1.618837 AGCAGGTTCTCACGCTCTTAA 59.381 47.619 0.00 0.00 0.00 1.85
2586 3435 1.202582 GAGCAGGTTCTCACGCTCTTA 59.797 52.381 0.00 0.00 45.86 2.10
2587 3436 0.037790 GAGCAGGTTCTCACGCTCTT 60.038 55.000 0.00 0.00 45.86 2.85
2588 3437 1.589113 GAGCAGGTTCTCACGCTCT 59.411 57.895 0.00 0.00 45.86 4.09
2589 3438 4.177229 GAGCAGGTTCTCACGCTC 57.823 61.111 0.00 0.00 43.60 5.03
2590 3439 2.659610 GGAGCAGGTTCTCACGCT 59.340 61.111 0.00 0.00 37.44 5.07
2591 3440 2.435059 GGGAGCAGGTTCTCACGC 60.435 66.667 0.00 0.00 34.84 5.34
2592 3441 2.266055 GGGGAGCAGGTTCTCACG 59.734 66.667 0.00 0.00 37.37 4.35
2593 3442 1.194781 TCAGGGGAGCAGGTTCTCAC 61.195 60.000 0.00 0.00 35.79 3.51
2594 3443 1.158466 TCAGGGGAGCAGGTTCTCA 59.842 57.895 0.00 0.00 34.84 3.27
2595 3444 1.194781 TGTCAGGGGAGCAGGTTCTC 61.195 60.000 0.00 0.00 0.00 2.87
2596 3445 0.548682 ATGTCAGGGGAGCAGGTTCT 60.549 55.000 0.00 0.00 0.00 3.01
2597 3446 1.139853 CTATGTCAGGGGAGCAGGTTC 59.860 57.143 0.00 0.00 0.00 3.62
2598 3447 1.207791 CTATGTCAGGGGAGCAGGTT 58.792 55.000 0.00 0.00 0.00 3.50
2599 3448 1.341156 GCTATGTCAGGGGAGCAGGT 61.341 60.000 0.00 0.00 34.96 4.00
2600 3449 1.053264 AGCTATGTCAGGGGAGCAGG 61.053 60.000 0.00 0.00 37.40 4.85
2601 3450 0.106335 CAGCTATGTCAGGGGAGCAG 59.894 60.000 0.00 0.00 37.40 4.24
2602 3451 1.976132 GCAGCTATGTCAGGGGAGCA 61.976 60.000 0.00 0.00 37.40 4.26
2603 3452 1.227793 GCAGCTATGTCAGGGGAGC 60.228 63.158 0.00 0.00 35.07 4.70
2604 3453 0.835941 AAGCAGCTATGTCAGGGGAG 59.164 55.000 0.00 0.00 0.00 4.30
2605 3454 2.174685 TAAGCAGCTATGTCAGGGGA 57.825 50.000 0.00 0.00 0.00 4.81
2606 3455 3.406764 GATTAAGCAGCTATGTCAGGGG 58.593 50.000 0.00 0.00 0.00 4.79
2607 3456 3.072184 AGGATTAAGCAGCTATGTCAGGG 59.928 47.826 0.00 0.00 0.00 4.45
2608 3457 4.063689 CAGGATTAAGCAGCTATGTCAGG 58.936 47.826 0.00 0.00 0.00 3.86
2609 3458 4.953667 TCAGGATTAAGCAGCTATGTCAG 58.046 43.478 0.00 0.00 0.00 3.51
2610 3459 5.357742 TTCAGGATTAAGCAGCTATGTCA 57.642 39.130 0.00 0.00 0.00 3.58
2611 3460 4.754114 CCTTCAGGATTAAGCAGCTATGTC 59.246 45.833 0.00 0.00 37.39 3.06
2612 3461 4.445448 CCCTTCAGGATTAAGCAGCTATGT 60.445 45.833 0.00 0.00 38.24 2.29
2613 3462 4.070716 CCCTTCAGGATTAAGCAGCTATG 58.929 47.826 0.00 0.00 38.24 2.23
2614 3463 3.073650 CCCCTTCAGGATTAAGCAGCTAT 59.926 47.826 0.00 0.00 38.24 2.97
2615 3464 2.439507 CCCCTTCAGGATTAAGCAGCTA 59.560 50.000 0.00 0.00 38.24 3.32
2616 3465 1.213926 CCCCTTCAGGATTAAGCAGCT 59.786 52.381 0.00 0.00 38.24 4.24
2617 3466 1.212935 TCCCCTTCAGGATTAAGCAGC 59.787 52.381 0.00 0.00 38.24 5.25
2618 3467 3.117738 ACATCCCCTTCAGGATTAAGCAG 60.118 47.826 0.00 0.00 44.61 4.24
2619 3468 2.852449 ACATCCCCTTCAGGATTAAGCA 59.148 45.455 0.00 0.00 44.61 3.91
2620 3469 3.217626 CACATCCCCTTCAGGATTAAGC 58.782 50.000 0.00 0.00 44.61 3.09
2621 3470 3.435601 CCCACATCCCCTTCAGGATTAAG 60.436 52.174 0.00 0.00 44.61 1.85
2622 3471 2.513738 CCCACATCCCCTTCAGGATTAA 59.486 50.000 0.00 0.00 44.61 1.40
2623 3472 2.135189 CCCACATCCCCTTCAGGATTA 58.865 52.381 0.00 0.00 44.61 1.75
2624 3473 0.929244 CCCACATCCCCTTCAGGATT 59.071 55.000 0.00 0.00 44.61 3.01
2626 3475 1.619363 CCCCACATCCCCTTCAGGA 60.619 63.158 0.00 0.00 41.18 3.86
2627 3476 2.693871 CCCCCACATCCCCTTCAGG 61.694 68.421 0.00 0.00 0.00 3.86
2628 3477 0.623324 TACCCCCACATCCCCTTCAG 60.623 60.000 0.00 0.00 0.00 3.02
2629 3478 0.623324 CTACCCCCACATCCCCTTCA 60.623 60.000 0.00 0.00 0.00 3.02
2630 3479 0.327191 TCTACCCCCACATCCCCTTC 60.327 60.000 0.00 0.00 0.00 3.46
2631 3480 0.350541 ATCTACCCCCACATCCCCTT 59.649 55.000 0.00 0.00 0.00 3.95
2632 3481 0.104409 GATCTACCCCCACATCCCCT 60.104 60.000 0.00 0.00 0.00 4.79
2633 3482 0.104409 AGATCTACCCCCACATCCCC 60.104 60.000 0.00 0.00 0.00 4.81
2634 3483 1.059913 CAGATCTACCCCCACATCCC 58.940 60.000 0.00 0.00 0.00 3.85
2635 3484 1.059913 CCAGATCTACCCCCACATCC 58.940 60.000 0.00 0.00 0.00 3.51
2636 3485 0.398318 GCCAGATCTACCCCCACATC 59.602 60.000 0.00 0.00 0.00 3.06
2637 3486 1.410850 CGCCAGATCTACCCCCACAT 61.411 60.000 0.00 0.00 0.00 3.21
2638 3487 2.063979 CGCCAGATCTACCCCCACA 61.064 63.158 0.00 0.00 0.00 4.17
2639 3488 2.808206 CCGCCAGATCTACCCCCAC 61.808 68.421 0.00 0.00 0.00 4.61
2640 3489 2.445845 CCGCCAGATCTACCCCCA 60.446 66.667 0.00 0.00 0.00 4.96
2641 3490 2.122989 TCCGCCAGATCTACCCCC 60.123 66.667 0.00 0.00 0.00 5.40
2642 3491 2.210711 CCTCCGCCAGATCTACCCC 61.211 68.421 0.00 0.00 0.00 4.95
2643 3492 2.210711 CCCTCCGCCAGATCTACCC 61.211 68.421 0.00 0.00 0.00 3.69
2644 3493 2.873525 GCCCTCCGCCAGATCTACC 61.874 68.421 0.00 0.00 0.00 3.18
2645 3494 2.134287 TGCCCTCCGCCAGATCTAC 61.134 63.158 0.00 0.00 36.24 2.59
2646 3495 2.134287 GTGCCCTCCGCCAGATCTA 61.134 63.158 0.00 0.00 36.24 1.98
2647 3496 3.474570 GTGCCCTCCGCCAGATCT 61.475 66.667 0.00 0.00 36.24 2.75
2648 3497 4.899239 CGTGCCCTCCGCCAGATC 62.899 72.222 0.00 0.00 36.24 2.75
2665 3514 3.909258 TTTCGCCTCTGCCGTCGTC 62.909 63.158 0.00 0.00 0.00 4.20
2666 3515 3.296709 ATTTCGCCTCTGCCGTCGT 62.297 57.895 0.00 0.00 0.00 4.34
2667 3516 2.509336 ATTTCGCCTCTGCCGTCG 60.509 61.111 0.00 0.00 0.00 5.12
2668 3517 2.464459 CCATTTCGCCTCTGCCGTC 61.464 63.158 0.00 0.00 0.00 4.79
2669 3518 2.436646 CCATTTCGCCTCTGCCGT 60.437 61.111 0.00 0.00 0.00 5.68
2670 3519 3.204827 CCCATTTCGCCTCTGCCG 61.205 66.667 0.00 0.00 0.00 5.69
2671 3520 2.830370 CCCCATTTCGCCTCTGCC 60.830 66.667 0.00 0.00 0.00 4.85
2672 3521 0.393808 TAACCCCATTTCGCCTCTGC 60.394 55.000 0.00 0.00 0.00 4.26
2673 3522 1.065418 ACTAACCCCATTTCGCCTCTG 60.065 52.381 0.00 0.00 0.00 3.35
2674 3523 1.065418 CACTAACCCCATTTCGCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
2675 3524 1.379527 CACTAACCCCATTTCGCCTC 58.620 55.000 0.00 0.00 0.00 4.70
2676 3525 0.034477 CCACTAACCCCATTTCGCCT 60.034 55.000 0.00 0.00 0.00 5.52
2677 3526 0.323087 ACCACTAACCCCATTTCGCC 60.323 55.000 0.00 0.00 0.00 5.54
2678 3527 1.201414 CAACCACTAACCCCATTTCGC 59.799 52.381 0.00 0.00 0.00 4.70
2679 3528 1.816224 CCAACCACTAACCCCATTTCG 59.184 52.381 0.00 0.00 0.00 3.46
2680 3529 3.089284 CTCCAACCACTAACCCCATTTC 58.911 50.000 0.00 0.00 0.00 2.17
2681 3530 2.225267 CCTCCAACCACTAACCCCATTT 60.225 50.000 0.00 0.00 0.00 2.32
2682 3531 1.357761 CCTCCAACCACTAACCCCATT 59.642 52.381 0.00 0.00 0.00 3.16
2683 3532 0.999712 CCTCCAACCACTAACCCCAT 59.000 55.000 0.00 0.00 0.00 4.00
2684 3533 1.137594 CCCTCCAACCACTAACCCCA 61.138 60.000 0.00 0.00 0.00 4.96
2685 3534 1.689412 CCCTCCAACCACTAACCCC 59.311 63.158 0.00 0.00 0.00 4.95
2686 3535 1.001269 GCCCTCCAACCACTAACCC 60.001 63.158 0.00 0.00 0.00 4.11
2687 3536 0.331616 ATGCCCTCCAACCACTAACC 59.668 55.000 0.00 0.00 0.00 2.85
2688 3537 1.004277 TCATGCCCTCCAACCACTAAC 59.996 52.381 0.00 0.00 0.00 2.34
2689 3538 1.004277 GTCATGCCCTCCAACCACTAA 59.996 52.381 0.00 0.00 0.00 2.24
2690 3539 0.618458 GTCATGCCCTCCAACCACTA 59.382 55.000 0.00 0.00 0.00 2.74
2691 3540 1.380302 GTCATGCCCTCCAACCACT 59.620 57.895 0.00 0.00 0.00 4.00
2692 3541 2.040544 CGTCATGCCCTCCAACCAC 61.041 63.158 0.00 0.00 0.00 4.16
2693 3542 2.350895 CGTCATGCCCTCCAACCA 59.649 61.111 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.