Multiple sequence alignment - TraesCS3D01G250400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G250400 chr3D 100.000 2594 0 0 1 2594 350794176 350791583 0.000000e+00 4791.0
1 TraesCS3D01G250400 chr3D 94.024 753 37 4 858 1602 349974575 349973823 0.000000e+00 1134.0
2 TraesCS3D01G250400 chr3D 76.754 228 48 4 7 232 576255696 576255472 3.510000e-24 122.0
3 TraesCS3D01G250400 chr3B 91.228 1368 103 11 928 2290 449203706 449202351 0.000000e+00 1845.0
4 TraesCS3D01G250400 chr3B 91.899 753 41 5 858 1602 448864587 448863847 0.000000e+00 1035.0
5 TraesCS3D01G250400 chr3B 76.964 560 94 23 7 548 27929754 27930296 1.170000e-73 287.0
6 TraesCS3D01G250400 chr3B 92.000 175 14 0 2289 2463 299601627 299601453 1.990000e-61 246.0
7 TraesCS3D01G250400 chr3B 90.741 54 5 0 864 917 449203812 449203759 3.580000e-09 73.1
8 TraesCS3D01G250400 chr3A 94.432 916 39 7 712 1615 468517261 468516346 0.000000e+00 1399.0
9 TraesCS3D01G250400 chr3A 92.975 726 43 4 885 1602 468251839 468251114 0.000000e+00 1051.0
10 TraesCS3D01G250400 chr3A 89.142 746 73 6 1 740 468518012 468517269 0.000000e+00 922.0
11 TraesCS3D01G250400 chr1D 96.417 307 10 1 2289 2594 471608031 471608337 2.980000e-139 505.0
12 TraesCS3D01G250400 chr5D 95.752 306 12 1 2289 2594 310573839 310573535 2.320000e-135 492.0
13 TraesCS3D01G250400 chr2D 90.190 316 20 2 2289 2593 21235128 21234813 4.020000e-108 401.0
14 TraesCS3D01G250400 chr2D 86.859 312 33 3 2290 2594 520555878 520556188 2.470000e-90 342.0
15 TraesCS3D01G250400 chr2D 87.273 55 7 0 324 378 392519130 392519184 2.160000e-06 63.9
16 TraesCS3D01G250400 chr5A 77.385 650 124 16 4 636 144931401 144932044 5.280000e-97 364.0
17 TraesCS3D01G250400 chr7A 76.614 697 139 22 113 793 157203324 157204012 1.900000e-96 363.0
18 TraesCS3D01G250400 chr4D 86.129 310 34 4 2290 2592 95120669 95120976 2.490000e-85 326.0
19 TraesCS3D01G250400 chr2B 83.793 290 35 11 2288 2571 707260130 707259847 5.500000e-67 265.0
20 TraesCS3D01G250400 chr2B 84.133 271 37 5 2289 2558 250516860 250517125 9.210000e-65 257.0
21 TraesCS3D01G250400 chr2B 89.617 183 15 4 2285 2463 443268799 443268981 2.010000e-56 230.0
22 TraesCS3D01G250400 chr1B 83.764 271 37 6 2289 2558 679325755 679325491 1.540000e-62 250.0
23 TraesCS3D01G250400 chr1B 91.124 169 12 2 2298 2463 65692856 65693024 2.600000e-55 226.0
24 TraesCS3D01G250400 chr5B 83.273 275 36 8 2289 2558 321200325 321200594 7.170000e-61 244.0
25 TraesCS3D01G250400 chr6A 72.289 581 132 23 7 582 53885602 53885046 1.240000e-33 154.0
26 TraesCS3D01G250400 chr6A 75.983 229 48 7 7 232 565584037 565583813 7.590000e-21 111.0
27 TraesCS3D01G250400 chr6B 72.941 425 82 22 300 716 102456656 102457055 1.630000e-22 117.0
28 TraesCS3D01G250400 chr4A 86.735 98 13 0 455 552 58848346 58848443 2.730000e-20 110.0
29 TraesCS3D01G250400 chr4A 77.576 165 30 7 71 232 59315426 59315266 2.750000e-15 93.5
30 TraesCS3D01G250400 chr6D 76.995 213 29 11 341 551 378395005 378394811 1.270000e-18 104.0
31 TraesCS3D01G250400 chr6D 70.598 602 136 25 132 720 69294655 69295228 2.750000e-15 93.5
32 TraesCS3D01G250400 chr7B 77.439 164 32 5 72 233 664617011 664617171 2.750000e-15 93.5
33 TraesCS3D01G250400 chr2A 100.000 29 0 0 346 374 718830704 718830732 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G250400 chr3D 350791583 350794176 2593 True 4791.00 4791 100.0000 1 2594 1 chr3D.!!$R2 2593
1 TraesCS3D01G250400 chr3D 349973823 349974575 752 True 1134.00 1134 94.0240 858 1602 1 chr3D.!!$R1 744
2 TraesCS3D01G250400 chr3B 448863847 448864587 740 True 1035.00 1035 91.8990 858 1602 1 chr3B.!!$R2 744
3 TraesCS3D01G250400 chr3B 449202351 449203812 1461 True 959.05 1845 90.9845 864 2290 2 chr3B.!!$R3 1426
4 TraesCS3D01G250400 chr3B 27929754 27930296 542 False 287.00 287 76.9640 7 548 1 chr3B.!!$F1 541
5 TraesCS3D01G250400 chr3A 468516346 468518012 1666 True 1160.50 1399 91.7870 1 1615 2 chr3A.!!$R2 1614
6 TraesCS3D01G250400 chr3A 468251114 468251839 725 True 1051.00 1051 92.9750 885 1602 1 chr3A.!!$R1 717
7 TraesCS3D01G250400 chr5A 144931401 144932044 643 False 364.00 364 77.3850 4 636 1 chr5A.!!$F1 632
8 TraesCS3D01G250400 chr7A 157203324 157204012 688 False 363.00 363 76.6140 113 793 1 chr7A.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 488 0.107703 CGATGGCTAGGGTTTGCTCA 60.108 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2109 0.109532 TTCTCCGGCATGTTGGTTCA 59.89 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.458579 CGGCGAGTCGAACGTGTG 61.459 66.667 18.61 0.00 0.00 3.82
55 56 3.028019 GCGAGTCGAACGTGTGCA 61.028 61.111 18.61 0.00 0.00 4.57
256 262 2.632377 CAGATGTTGGCCTTCACGTAT 58.368 47.619 3.32 0.00 0.00 3.06
268 274 2.125431 ACGTATGGGCGGTTTCGG 60.125 61.111 0.00 0.00 36.79 4.30
329 348 4.767255 GAGGTGGAGTGGCTGCGG 62.767 72.222 0.00 0.00 0.00 5.69
423 442 4.608774 ACGGTGAGGACGGGGTGA 62.609 66.667 0.00 0.00 35.23 4.02
468 488 0.107703 CGATGGCTAGGGTTTGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
490 510 2.205022 TCGGGTTTCGAGAAGGTAGA 57.795 50.000 0.00 0.00 43.74 2.59
518 538 1.174783 GGAGTGGAAGCGTAGACTGA 58.825 55.000 0.00 0.00 0.00 3.41
548 568 4.082245 CACGGCTTCCACATTAAAAAGGAT 60.082 41.667 0.00 0.00 0.00 3.24
552 573 5.105063 GCTTCCACATTAAAAAGGATGAGC 58.895 41.667 9.21 6.16 29.79 4.26
556 577 3.023832 ACATTAAAAAGGATGAGCCCCG 58.976 45.455 0.00 0.00 37.37 5.73
587 608 4.392166 TCTGACAGGCGGGGGCTA 62.392 66.667 1.81 0.00 36.44 3.93
649 670 2.034532 CAGCTGCCATGTGTCCCA 59.965 61.111 0.00 0.00 0.00 4.37
650 671 1.379443 CAGCTGCCATGTGTCCCAT 60.379 57.895 0.00 0.00 0.00 4.00
681 703 3.732892 CGGGCGGCGTTCATGTTT 61.733 61.111 9.37 0.00 0.00 2.83
693 715 2.254546 TCATGTTTGTTCGCTGTCCT 57.745 45.000 0.00 0.00 0.00 3.85
701 723 0.784778 GTTCGCTGTCCTTCTGAACG 59.215 55.000 0.00 0.00 30.87 3.95
709 731 1.673920 GTCCTTCTGAACGCAAACCAA 59.326 47.619 0.00 0.00 0.00 3.67
710 732 2.098443 GTCCTTCTGAACGCAAACCAAA 59.902 45.455 0.00 0.00 0.00 3.28
735 793 1.895131 AGTTTGCTCCCGAAATGCAAT 59.105 42.857 0.00 0.00 44.55 3.56
759 817 2.222953 GCCGAACGCGAAACAGATAAAT 60.223 45.455 15.93 0.00 40.82 1.40
763 821 5.341196 CCGAACGCGAAACAGATAAATTTTT 59.659 36.000 15.93 0.00 40.82 1.94
797 864 2.357034 TCTGTCCGTTTGGCTCGC 60.357 61.111 0.00 0.00 34.14 5.03
820 887 2.048222 ACACACGCGGACCAGATG 60.048 61.111 12.47 0.00 0.00 2.90
831 898 2.307768 GGACCAGATGAGGTACGATCA 58.692 52.381 2.28 2.28 43.38 2.92
903 973 1.316266 CCCACCTGGATCCTCCTCT 59.684 63.158 14.23 0.00 37.46 3.69
954 1063 4.457834 TTTCCTTTTGAGCGGAAAAACA 57.542 36.364 1.29 0.00 44.04 2.83
1473 1588 2.419297 GGATTTGTCTCGCCTCATGACT 60.419 50.000 0.00 0.00 0.00 3.41
1676 1794 3.006967 AGCTACGGAAGAACACACAAGAT 59.993 43.478 0.00 0.00 0.00 2.40
1756 1876 5.811399 TGACAGTGTTAGTTTTGAGGTTG 57.189 39.130 0.00 0.00 0.00 3.77
1761 1881 7.438564 ACAGTGTTAGTTTTGAGGTTGTTTTT 58.561 30.769 0.00 0.00 0.00 1.94
1762 1882 7.383843 ACAGTGTTAGTTTTGAGGTTGTTTTTG 59.616 33.333 0.00 0.00 0.00 2.44
1763 1883 7.383843 CAGTGTTAGTTTTGAGGTTGTTTTTGT 59.616 33.333 0.00 0.00 0.00 2.83
1764 1884 7.929245 AGTGTTAGTTTTGAGGTTGTTTTTGTT 59.071 29.630 0.00 0.00 0.00 2.83
1765 1885 8.552865 GTGTTAGTTTTGAGGTTGTTTTTGTTT 58.447 29.630 0.00 0.00 0.00 2.83
1766 1886 9.110502 TGTTAGTTTTGAGGTTGTTTTTGTTTT 57.889 25.926 0.00 0.00 0.00 2.43
1767 1887 9.588774 GTTAGTTTTGAGGTTGTTTTTGTTTTC 57.411 29.630 0.00 0.00 0.00 2.29
1773 1893 4.561105 AGGTTGTTTTTGTTTTCTTGCGA 58.439 34.783 0.00 0.00 0.00 5.10
1795 1915 4.600692 AAAACACCCCAGCTCAATAAAC 57.399 40.909 0.00 0.00 0.00 2.01
1807 1927 5.584649 CAGCTCAATAAACAAGGATAACCGA 59.415 40.000 0.00 0.00 41.83 4.69
1808 1928 6.260936 CAGCTCAATAAACAAGGATAACCGAT 59.739 38.462 0.00 0.00 41.83 4.18
1810 1930 6.260050 GCTCAATAAACAAGGATAACCGATGA 59.740 38.462 5.15 0.00 41.83 2.92
1824 1944 3.734463 ACCGATGATACACAACACACAA 58.266 40.909 0.00 0.00 0.00 3.33
1848 1968 3.244911 ACAGGTTGAGAATTACACCCAGG 60.245 47.826 2.59 0.00 0.00 4.45
1850 1970 3.397955 AGGTTGAGAATTACACCCAGGTT 59.602 43.478 0.00 0.00 0.00 3.50
1853 1973 2.027561 TGAGAATTACACCCAGGTTCCG 60.028 50.000 0.00 0.00 0.00 4.30
1873 1993 0.251341 GAGGAGCCAACCCAACACAT 60.251 55.000 0.00 0.00 0.00 3.21
1878 1998 1.112315 GCCAACCCAACACATCCACA 61.112 55.000 0.00 0.00 0.00 4.17
1879 1999 1.407936 CCAACCCAACACATCCACAA 58.592 50.000 0.00 0.00 0.00 3.33
1942 2062 0.179119 CCGACCTGACCGTGTTATCC 60.179 60.000 0.00 0.00 0.00 2.59
1943 2063 0.524816 CGACCTGACCGTGTTATCCG 60.525 60.000 0.00 0.00 0.00 4.18
1945 2065 1.216977 CCTGACCGTGTTATCCGCA 59.783 57.895 0.00 0.00 0.00 5.69
1964 2084 1.226018 GGCAGGATTTTCGCGAACG 60.226 57.895 23.33 7.09 42.01 3.95
1989 2109 4.553330 AGTCGACAACTTTGGTCCATAT 57.447 40.909 19.50 0.00 33.03 1.78
1991 2111 4.020573 AGTCGACAACTTTGGTCCATATGA 60.021 41.667 19.50 0.00 33.03 2.15
1993 2113 4.693566 TCGACAACTTTGGTCCATATGAAC 59.306 41.667 3.65 0.00 31.55 3.18
1998 2118 4.735369 ACTTTGGTCCATATGAACCAACA 58.265 39.130 24.63 14.98 41.35 3.33
1999 2119 5.332743 ACTTTGGTCCATATGAACCAACAT 58.667 37.500 24.63 13.61 41.35 2.71
2001 2121 3.023119 TGGTCCATATGAACCAACATGC 58.977 45.455 11.99 0.00 0.00 4.06
2018 2138 1.382522 TGCCGGAGAAGCATTGAATC 58.617 50.000 5.05 0.00 34.69 2.52
2052 2172 3.190118 GGTTTGAAAGCATCACCTCTCTG 59.810 47.826 1.74 0.00 37.92 3.35
2058 2178 3.474570 ATCACCTCTCTGGCCGGC 61.475 66.667 21.18 21.18 40.22 6.13
2077 2197 1.744114 GCGACAGGAGGGAGGAAAATC 60.744 57.143 0.00 0.00 0.00 2.17
2084 2204 1.485066 GAGGGAGGAAAATCTGGCGTA 59.515 52.381 0.00 0.00 0.00 4.42
2085 2205 1.486726 AGGGAGGAAAATCTGGCGTAG 59.513 52.381 0.00 0.00 0.00 3.51
2087 2207 2.552031 GGAGGAAAATCTGGCGTAGAC 58.448 52.381 0.00 0.00 38.49 2.59
2088 2208 2.168728 GGAGGAAAATCTGGCGTAGACT 59.831 50.000 0.00 0.00 38.49 3.24
2090 2210 3.600388 AGGAAAATCTGGCGTAGACTTG 58.400 45.455 0.00 0.00 38.49 3.16
2096 2216 0.603569 CTGGCGTAGACTTGACCACT 59.396 55.000 0.00 0.00 34.59 4.00
2100 2220 1.669211 GCGTAGACTTGACCACTCACC 60.669 57.143 0.00 0.00 0.00 4.02
2106 2226 3.259374 AGACTTGACCACTCACCAGTATG 59.741 47.826 0.00 0.00 0.00 2.39
2157 2277 0.532573 TGTAGAAGCTCCAAGGCTCG 59.467 55.000 0.00 0.00 42.24 5.03
2161 2281 3.618780 AAGCTCCAAGGCTCGGCAG 62.619 63.158 0.00 0.00 42.24 4.85
2206 2326 3.214328 ACTACCAGAGCACAAAACCAAG 58.786 45.455 0.00 0.00 0.00 3.61
2216 2336 0.177604 CAAAACCAAGCACAAGGCCA 59.822 50.000 5.01 0.00 46.50 5.36
2220 2340 1.529010 CCAAGCACAAGGCCACTGA 60.529 57.895 5.01 0.00 46.50 3.41
2263 2383 2.736670 AACCTGCTTCCATATCCACC 57.263 50.000 0.00 0.00 0.00 4.61
2267 2387 1.942657 CTGCTTCCATATCCACCAACG 59.057 52.381 0.00 0.00 0.00 4.10
2272 2392 1.157870 CCATATCCACCAACGACCGC 61.158 60.000 0.00 0.00 0.00 5.68
2273 2393 1.145377 ATATCCACCAACGACCGCC 59.855 57.895 0.00 0.00 0.00 6.13
2290 2410 1.795170 GCCGCACACCACATTTCACT 61.795 55.000 0.00 0.00 0.00 3.41
2291 2411 1.518325 CCGCACACCACATTTCACTA 58.482 50.000 0.00 0.00 0.00 2.74
2292 2412 1.464608 CCGCACACCACATTTCACTAG 59.535 52.381 0.00 0.00 0.00 2.57
2293 2413 2.412870 CGCACACCACATTTCACTAGA 58.587 47.619 0.00 0.00 0.00 2.43
2294 2414 3.002791 CGCACACCACATTTCACTAGAT 58.997 45.455 0.00 0.00 0.00 1.98
2295 2415 3.062639 CGCACACCACATTTCACTAGATC 59.937 47.826 0.00 0.00 0.00 2.75
2296 2416 3.062639 GCACACCACATTTCACTAGATCG 59.937 47.826 0.00 0.00 0.00 3.69
2297 2417 3.618594 CACACCACATTTCACTAGATCGG 59.381 47.826 0.00 0.00 0.00 4.18
2298 2418 2.609459 CACCACATTTCACTAGATCGGC 59.391 50.000 0.00 0.00 0.00 5.54
2299 2419 2.236146 ACCACATTTCACTAGATCGGCA 59.764 45.455 0.00 0.00 0.00 5.69
2300 2420 2.868583 CCACATTTCACTAGATCGGCAG 59.131 50.000 0.00 0.00 0.00 4.85
2301 2421 2.286294 CACATTTCACTAGATCGGCAGC 59.714 50.000 0.00 0.00 0.00 5.25
2302 2422 1.524355 CATTTCACTAGATCGGCAGCG 59.476 52.381 0.00 0.00 0.00 5.18
2303 2423 0.806102 TTTCACTAGATCGGCAGCGC 60.806 55.000 0.00 0.00 0.00 5.92
2304 2424 2.936829 TTCACTAGATCGGCAGCGCG 62.937 60.000 0.00 0.00 0.00 6.86
2305 2425 4.933064 ACTAGATCGGCAGCGCGC 62.933 66.667 26.66 26.66 41.28 6.86
2330 2450 4.762825 CGAGGGTGTCGGTTTCAA 57.237 55.556 0.00 0.00 45.58 2.69
2331 2451 2.231820 CGAGGGTGTCGGTTTCAAC 58.768 57.895 0.00 0.00 45.58 3.18
2332 2452 1.554042 CGAGGGTGTCGGTTTCAACG 61.554 60.000 0.00 0.00 45.58 4.10
2333 2453 0.249573 GAGGGTGTCGGTTTCAACGA 60.250 55.000 0.00 0.00 38.13 3.85
2334 2454 0.395312 AGGGTGTCGGTTTCAACGAT 59.605 50.000 0.00 0.00 42.82 3.73
2335 2455 0.515564 GGGTGTCGGTTTCAACGATG 59.484 55.000 0.00 0.00 42.82 3.84
2336 2456 1.223187 GGTGTCGGTTTCAACGATGT 58.777 50.000 0.00 0.00 42.82 3.06
2337 2457 2.406130 GGTGTCGGTTTCAACGATGTA 58.594 47.619 0.00 0.00 42.82 2.29
2338 2458 2.156310 GGTGTCGGTTTCAACGATGTAC 59.844 50.000 0.00 0.00 42.82 2.90
2339 2459 2.156310 GTGTCGGTTTCAACGATGTACC 59.844 50.000 8.80 8.80 42.82 3.34
2340 2460 1.728425 GTCGGTTTCAACGATGTACCC 59.272 52.381 11.78 0.00 42.82 3.69
2341 2461 1.343789 TCGGTTTCAACGATGTACCCA 59.656 47.619 11.78 0.46 35.12 4.51
2342 2462 2.027929 TCGGTTTCAACGATGTACCCAT 60.028 45.455 11.78 0.00 35.12 4.00
2343 2463 2.095213 CGGTTTCAACGATGTACCCATG 59.905 50.000 11.78 0.00 32.36 3.66
2344 2464 3.078837 GGTTTCAACGATGTACCCATGT 58.921 45.455 7.98 0.00 0.00 3.21
2345 2465 4.255301 GGTTTCAACGATGTACCCATGTA 58.745 43.478 7.98 0.00 0.00 2.29
2346 2466 4.879545 GGTTTCAACGATGTACCCATGTAT 59.120 41.667 7.98 0.00 0.00 2.29
2347 2467 5.220777 GGTTTCAACGATGTACCCATGTATG 60.221 44.000 7.98 0.00 0.00 2.39
2348 2468 4.746535 TCAACGATGTACCCATGTATGT 57.253 40.909 0.00 0.00 0.00 2.29
2349 2469 5.855740 TCAACGATGTACCCATGTATGTA 57.144 39.130 0.00 0.00 0.00 2.29
2350 2470 6.223351 TCAACGATGTACCCATGTATGTAA 57.777 37.500 0.00 0.00 0.00 2.41
2351 2471 6.822442 TCAACGATGTACCCATGTATGTAAT 58.178 36.000 0.00 0.00 0.00 1.89
2352 2472 6.704050 TCAACGATGTACCCATGTATGTAATG 59.296 38.462 0.00 0.00 0.00 1.90
2353 2473 5.547465 ACGATGTACCCATGTATGTAATGG 58.453 41.667 0.00 0.00 43.66 3.16
2354 2474 5.071250 ACGATGTACCCATGTATGTAATGGT 59.929 40.000 0.00 0.00 42.68 3.55
2355 2475 5.408299 CGATGTACCCATGTATGTAATGGTG 59.592 44.000 2.02 0.00 42.68 4.17
2356 2476 5.959583 TGTACCCATGTATGTAATGGTGA 57.040 39.130 2.02 0.00 42.68 4.02
2357 2477 6.314899 TGTACCCATGTATGTAATGGTGAA 57.685 37.500 2.02 0.00 42.68 3.18
2358 2478 6.353323 TGTACCCATGTATGTAATGGTGAAG 58.647 40.000 2.02 0.00 42.68 3.02
2359 2479 5.450818 ACCCATGTATGTAATGGTGAAGT 57.549 39.130 2.02 0.00 42.68 3.01
2360 2480 5.826643 ACCCATGTATGTAATGGTGAAGTT 58.173 37.500 2.02 0.00 42.68 2.66
2361 2481 6.964464 ACCCATGTATGTAATGGTGAAGTTA 58.036 36.000 2.02 0.00 42.68 2.24
2362 2482 7.054124 ACCCATGTATGTAATGGTGAAGTTAG 58.946 38.462 2.02 0.00 42.68 2.34
2363 2483 7.054124 CCCATGTATGTAATGGTGAAGTTAGT 58.946 38.462 2.02 0.00 42.68 2.24
2364 2484 8.208224 CCCATGTATGTAATGGTGAAGTTAGTA 58.792 37.037 2.02 0.00 42.68 1.82
2365 2485 9.261180 CCATGTATGTAATGGTGAAGTTAGTAG 57.739 37.037 0.00 0.00 39.87 2.57
2370 2490 7.900782 TGTAATGGTGAAGTTAGTAGAAAGC 57.099 36.000 0.00 0.00 0.00 3.51
2371 2491 6.877322 TGTAATGGTGAAGTTAGTAGAAAGCC 59.123 38.462 0.00 0.00 0.00 4.35
2372 2492 4.967084 TGGTGAAGTTAGTAGAAAGCCA 57.033 40.909 0.00 0.00 0.00 4.75
2373 2493 4.894784 TGGTGAAGTTAGTAGAAAGCCAG 58.105 43.478 0.00 0.00 0.00 4.85
2374 2494 4.591498 TGGTGAAGTTAGTAGAAAGCCAGA 59.409 41.667 0.00 0.00 0.00 3.86
2375 2495 4.930405 GGTGAAGTTAGTAGAAAGCCAGAC 59.070 45.833 0.00 0.00 0.00 3.51
2376 2496 5.279556 GGTGAAGTTAGTAGAAAGCCAGACT 60.280 44.000 0.00 0.00 0.00 3.24
2377 2497 6.224584 GTGAAGTTAGTAGAAAGCCAGACTT 58.775 40.000 0.00 0.00 41.70 3.01
2378 2498 7.376615 GTGAAGTTAGTAGAAAGCCAGACTTA 58.623 38.462 0.00 0.00 37.75 2.24
2379 2499 8.035984 GTGAAGTTAGTAGAAAGCCAGACTTAT 58.964 37.037 0.00 0.00 37.75 1.73
2380 2500 8.251721 TGAAGTTAGTAGAAAGCCAGACTTATC 58.748 37.037 0.00 0.00 37.75 1.75
2381 2501 7.719871 AGTTAGTAGAAAGCCAGACTTATCA 57.280 36.000 0.00 0.00 37.75 2.15
2382 2502 8.312669 AGTTAGTAGAAAGCCAGACTTATCAT 57.687 34.615 0.00 0.00 37.75 2.45
2383 2503 9.422681 AGTTAGTAGAAAGCCAGACTTATCATA 57.577 33.333 0.00 0.00 37.75 2.15
2384 2504 9.465985 GTTAGTAGAAAGCCAGACTTATCATAC 57.534 37.037 0.00 0.00 37.75 2.39
2385 2505 6.740110 AGTAGAAAGCCAGACTTATCATACG 58.260 40.000 0.00 0.00 37.75 3.06
2386 2506 5.599999 AGAAAGCCAGACTTATCATACGT 57.400 39.130 0.00 0.00 37.75 3.57
2387 2507 6.710597 AGAAAGCCAGACTTATCATACGTA 57.289 37.500 0.00 0.00 37.75 3.57
2388 2508 7.291411 AGAAAGCCAGACTTATCATACGTAT 57.709 36.000 1.14 1.14 37.75 3.06
2389 2509 7.727181 AGAAAGCCAGACTTATCATACGTATT 58.273 34.615 5.03 0.00 37.75 1.89
2390 2510 7.868415 AGAAAGCCAGACTTATCATACGTATTC 59.132 37.037 5.03 0.00 37.75 1.75
2391 2511 6.650427 AGCCAGACTTATCATACGTATTCA 57.350 37.500 5.03 0.00 0.00 2.57
2392 2512 7.050970 AGCCAGACTTATCATACGTATTCAA 57.949 36.000 5.03 0.00 0.00 2.69
2393 2513 7.671302 AGCCAGACTTATCATACGTATTCAAT 58.329 34.615 5.03 2.97 0.00 2.57
2394 2514 7.815068 AGCCAGACTTATCATACGTATTCAATC 59.185 37.037 5.03 0.00 0.00 2.67
2395 2515 7.598869 GCCAGACTTATCATACGTATTCAATCA 59.401 37.037 5.03 0.00 0.00 2.57
2396 2516 9.133627 CCAGACTTATCATACGTATTCAATCAG 57.866 37.037 5.03 4.11 0.00 2.90
2397 2517 9.133627 CAGACTTATCATACGTATTCAATCAGG 57.866 37.037 5.03 0.00 0.00 3.86
2398 2518 9.078990 AGACTTATCATACGTATTCAATCAGGA 57.921 33.333 5.03 0.00 0.00 3.86
2399 2519 9.862371 GACTTATCATACGTATTCAATCAGGAT 57.138 33.333 5.03 5.75 0.00 3.24
2409 2529 9.667107 ACGTATTCAATCAGGATAAGAAAAAGA 57.333 29.630 0.00 0.00 0.00 2.52
2420 2540 9.971922 CAGGATAAGAAAAAGAAACATTCAAGT 57.028 29.630 0.00 0.00 0.00 3.16
2421 2541 9.971922 AGGATAAGAAAAAGAAACATTCAAGTG 57.028 29.630 0.00 0.00 0.00 3.16
2422 2542 9.750125 GGATAAGAAAAAGAAACATTCAAGTGT 57.250 29.630 0.00 0.00 0.00 3.55
2427 2547 9.450807 AGAAAAAGAAACATTCAAGTGTAATCG 57.549 29.630 0.00 0.00 0.00 3.34
2428 2548 8.574196 AAAAAGAAACATTCAAGTGTAATCGG 57.426 30.769 0.00 0.00 0.00 4.18
2429 2549 7.504924 AAAGAAACATTCAAGTGTAATCGGA 57.495 32.000 0.00 0.00 0.00 4.55
2430 2550 6.727824 AGAAACATTCAAGTGTAATCGGAG 57.272 37.500 0.00 0.00 0.00 4.63
2431 2551 4.946784 AACATTCAAGTGTAATCGGAGC 57.053 40.909 0.00 0.00 0.00 4.70
2432 2552 3.937814 ACATTCAAGTGTAATCGGAGCA 58.062 40.909 0.00 0.00 0.00 4.26
2433 2553 4.323417 ACATTCAAGTGTAATCGGAGCAA 58.677 39.130 0.00 0.00 0.00 3.91
2434 2554 4.393062 ACATTCAAGTGTAATCGGAGCAAG 59.607 41.667 0.00 0.00 0.00 4.01
2435 2555 3.953712 TCAAGTGTAATCGGAGCAAGA 57.046 42.857 0.00 0.00 0.00 3.02
2436 2556 3.585862 TCAAGTGTAATCGGAGCAAGAC 58.414 45.455 0.00 0.00 0.00 3.01
2437 2557 3.006430 TCAAGTGTAATCGGAGCAAGACA 59.994 43.478 0.00 0.00 0.00 3.41
2438 2558 3.895232 AGTGTAATCGGAGCAAGACAT 57.105 42.857 0.00 0.00 0.00 3.06
2439 2559 3.786635 AGTGTAATCGGAGCAAGACATC 58.213 45.455 0.00 0.00 0.00 3.06
2440 2560 3.195610 AGTGTAATCGGAGCAAGACATCA 59.804 43.478 0.00 0.00 0.00 3.07
2441 2561 4.122776 GTGTAATCGGAGCAAGACATCAT 58.877 43.478 0.00 0.00 0.00 2.45
2442 2562 4.210120 GTGTAATCGGAGCAAGACATCATC 59.790 45.833 0.00 0.00 0.00 2.92
2443 2563 3.548745 AATCGGAGCAAGACATCATCA 57.451 42.857 0.00 0.00 0.00 3.07
2444 2564 2.591571 TCGGAGCAAGACATCATCAG 57.408 50.000 0.00 0.00 0.00 2.90
2445 2565 1.827344 TCGGAGCAAGACATCATCAGT 59.173 47.619 0.00 0.00 0.00 3.41
2446 2566 1.931841 CGGAGCAAGACATCATCAGTG 59.068 52.381 0.00 0.00 0.00 3.66
2447 2567 2.286872 GGAGCAAGACATCATCAGTGG 58.713 52.381 0.00 0.00 0.00 4.00
2448 2568 2.093288 GGAGCAAGACATCATCAGTGGA 60.093 50.000 0.00 0.00 0.00 4.02
2449 2569 3.433314 GGAGCAAGACATCATCAGTGGAT 60.433 47.826 0.00 0.00 0.00 3.41
2450 2570 4.202295 GGAGCAAGACATCATCAGTGGATA 60.202 45.833 0.00 0.00 30.87 2.59
2451 2571 4.701765 AGCAAGACATCATCAGTGGATAC 58.298 43.478 0.00 0.00 30.87 2.24
2452 2572 3.812053 GCAAGACATCATCAGTGGATACC 59.188 47.826 0.00 0.00 30.87 2.73
2453 2573 4.684214 GCAAGACATCATCAGTGGATACCA 60.684 45.833 0.00 0.00 30.87 3.25
2454 2574 5.430886 CAAGACATCATCAGTGGATACCAA 58.569 41.667 0.00 0.00 34.18 3.67
2455 2575 5.698741 AGACATCATCAGTGGATACCAAA 57.301 39.130 0.00 0.00 34.18 3.28
2456 2576 6.065976 AGACATCATCAGTGGATACCAAAA 57.934 37.500 0.00 0.00 34.18 2.44
2457 2577 5.882557 AGACATCATCAGTGGATACCAAAAC 59.117 40.000 0.00 0.00 34.18 2.43
2458 2578 5.819991 ACATCATCAGTGGATACCAAAACT 58.180 37.500 0.00 0.00 34.18 2.66
2459 2579 6.957631 ACATCATCAGTGGATACCAAAACTA 58.042 36.000 0.00 0.00 34.18 2.24
2460 2580 6.823689 ACATCATCAGTGGATACCAAAACTAC 59.176 38.462 0.00 0.00 34.18 2.73
2461 2581 6.367374 TCATCAGTGGATACCAAAACTACA 57.633 37.500 0.00 0.00 34.18 2.74
2462 2582 6.406370 TCATCAGTGGATACCAAAACTACAG 58.594 40.000 0.00 0.00 34.18 2.74
2463 2583 5.818678 TCAGTGGATACCAAAACTACAGT 57.181 39.130 0.00 0.00 34.18 3.55
2464 2584 6.921486 TCAGTGGATACCAAAACTACAGTA 57.079 37.500 0.00 0.00 34.18 2.74
2465 2585 6.694447 TCAGTGGATACCAAAACTACAGTAC 58.306 40.000 0.00 0.00 34.18 2.73
2466 2586 6.268158 TCAGTGGATACCAAAACTACAGTACA 59.732 38.462 0.00 0.00 34.18 2.90
2467 2587 6.932400 CAGTGGATACCAAAACTACAGTACAA 59.068 38.462 0.00 0.00 34.18 2.41
2468 2588 6.932960 AGTGGATACCAAAACTACAGTACAAC 59.067 38.462 0.00 0.00 34.18 3.32
2469 2589 6.707161 GTGGATACCAAAACTACAGTACAACA 59.293 38.462 0.00 0.00 34.18 3.33
2470 2590 6.707161 TGGATACCAAAACTACAGTACAACAC 59.293 38.462 0.00 0.00 0.00 3.32
2471 2591 6.707161 GGATACCAAAACTACAGTACAACACA 59.293 38.462 0.00 0.00 0.00 3.72
2472 2592 7.389607 GGATACCAAAACTACAGTACAACACAT 59.610 37.037 0.00 0.00 0.00 3.21
2473 2593 6.613755 ACCAAAACTACAGTACAACACATC 57.386 37.500 0.00 0.00 0.00 3.06
2474 2594 6.354130 ACCAAAACTACAGTACAACACATCT 58.646 36.000 0.00 0.00 0.00 2.90
2475 2595 6.482308 ACCAAAACTACAGTACAACACATCTC 59.518 38.462 0.00 0.00 0.00 2.75
2476 2596 6.073222 CCAAAACTACAGTACAACACATCTCC 60.073 42.308 0.00 0.00 0.00 3.71
2477 2597 5.801531 AACTACAGTACAACACATCTCCA 57.198 39.130 0.00 0.00 0.00 3.86
2478 2598 6.360370 AACTACAGTACAACACATCTCCAT 57.640 37.500 0.00 0.00 0.00 3.41
2479 2599 7.476540 AACTACAGTACAACACATCTCCATA 57.523 36.000 0.00 0.00 0.00 2.74
2480 2600 7.101652 ACTACAGTACAACACATCTCCATAG 57.898 40.000 0.00 0.00 0.00 2.23
2481 2601 4.759782 ACAGTACAACACATCTCCATAGC 58.240 43.478 0.00 0.00 0.00 2.97
2482 2602 4.122776 CAGTACAACACATCTCCATAGCC 58.877 47.826 0.00 0.00 0.00 3.93
2483 2603 3.774766 AGTACAACACATCTCCATAGCCA 59.225 43.478 0.00 0.00 0.00 4.75
2484 2604 2.991250 ACAACACATCTCCATAGCCAC 58.009 47.619 0.00 0.00 0.00 5.01
2485 2605 2.292267 CAACACATCTCCATAGCCACC 58.708 52.381 0.00 0.00 0.00 4.61
2486 2606 1.583556 ACACATCTCCATAGCCACCA 58.416 50.000 0.00 0.00 0.00 4.17
2487 2607 1.487976 ACACATCTCCATAGCCACCAG 59.512 52.381 0.00 0.00 0.00 4.00
2488 2608 1.764723 CACATCTCCATAGCCACCAGA 59.235 52.381 0.00 0.00 0.00 3.86
2489 2609 2.171237 CACATCTCCATAGCCACCAGAA 59.829 50.000 0.00 0.00 0.00 3.02
2490 2610 2.171448 ACATCTCCATAGCCACCAGAAC 59.829 50.000 0.00 0.00 0.00 3.01
2491 2611 0.824109 TCTCCATAGCCACCAGAACG 59.176 55.000 0.00 0.00 0.00 3.95
2492 2612 0.824109 CTCCATAGCCACCAGAACGA 59.176 55.000 0.00 0.00 0.00 3.85
2493 2613 1.414181 CTCCATAGCCACCAGAACGAT 59.586 52.381 0.00 0.00 0.00 3.73
2494 2614 2.628178 CTCCATAGCCACCAGAACGATA 59.372 50.000 0.00 0.00 0.00 2.92
2495 2615 2.628178 TCCATAGCCACCAGAACGATAG 59.372 50.000 0.00 0.00 46.19 2.08
2515 2635 8.811794 CGATAGTACAACACATTTGAAGAATG 57.188 34.615 0.00 0.00 0.00 2.67
2516 2636 8.655970 CGATAGTACAACACATTTGAAGAATGA 58.344 33.333 5.82 0.00 0.00 2.57
2520 2640 9.467258 AGTACAACACATTTGAAGAATGAAATG 57.533 29.630 5.82 0.00 42.71 2.32
2522 2642 8.721019 ACAACACATTTGAAGAATGAAATGTT 57.279 26.923 0.00 3.83 45.99 2.71
2523 2643 8.819974 ACAACACATTTGAAGAATGAAATGTTC 58.180 29.630 0.00 0.00 45.99 3.18
2524 2644 8.819015 CAACACATTTGAAGAATGAAATGTTCA 58.181 29.630 0.00 0.00 45.99 3.18
2548 2668 9.515226 TCATATACAGGGTAAATTAAAGGATGC 57.485 33.333 0.00 0.00 0.00 3.91
2549 2669 9.295825 CATATACAGGGTAAATTAAAGGATGCA 57.704 33.333 0.00 0.00 0.00 3.96
2550 2670 9.875708 ATATACAGGGTAAATTAAAGGATGCAA 57.124 29.630 0.00 0.00 0.00 4.08
2551 2671 8.782137 ATACAGGGTAAATTAAAGGATGCAAT 57.218 30.769 0.00 0.00 0.00 3.56
2552 2672 6.877236 ACAGGGTAAATTAAAGGATGCAATG 58.123 36.000 0.00 0.00 0.00 2.82
2553 2673 6.440328 ACAGGGTAAATTAAAGGATGCAATGT 59.560 34.615 0.00 0.00 0.00 2.71
2554 2674 7.038373 ACAGGGTAAATTAAAGGATGCAATGTT 60.038 33.333 0.00 0.00 0.00 2.71
2555 2675 7.492344 CAGGGTAAATTAAAGGATGCAATGTTC 59.508 37.037 0.00 0.00 0.00 3.18
2556 2676 7.180051 AGGGTAAATTAAAGGATGCAATGTTCA 59.820 33.333 0.00 0.00 0.00 3.18
2557 2677 7.986889 GGGTAAATTAAAGGATGCAATGTTCAT 59.013 33.333 0.00 0.00 0.00 2.57
2561 2681 8.931385 AATTAAAGGATGCAATGTTCATACAC 57.069 30.769 0.00 0.00 37.03 2.90
2562 2682 4.621068 AAGGATGCAATGTTCATACACG 57.379 40.909 0.00 0.00 37.03 4.49
2563 2683 2.945008 AGGATGCAATGTTCATACACGG 59.055 45.455 0.00 0.00 37.03 4.94
2564 2684 2.682856 GGATGCAATGTTCATACACGGT 59.317 45.455 0.00 0.00 37.03 4.83
2565 2685 3.874543 GGATGCAATGTTCATACACGGTA 59.125 43.478 0.00 0.00 37.03 4.02
2566 2686 4.024893 GGATGCAATGTTCATACACGGTAG 60.025 45.833 0.00 0.00 37.03 3.18
2567 2687 4.195225 TGCAATGTTCATACACGGTAGA 57.805 40.909 0.00 0.00 37.03 2.59
2568 2688 4.765273 TGCAATGTTCATACACGGTAGAT 58.235 39.130 0.00 0.00 37.03 1.98
2569 2689 5.908341 TGCAATGTTCATACACGGTAGATA 58.092 37.500 0.00 0.00 37.03 1.98
2570 2690 6.521162 TGCAATGTTCATACACGGTAGATAT 58.479 36.000 0.00 0.00 37.03 1.63
2571 2691 6.989759 TGCAATGTTCATACACGGTAGATATT 59.010 34.615 0.00 0.00 37.03 1.28
2572 2692 7.042119 TGCAATGTTCATACACGGTAGATATTG 60.042 37.037 0.00 0.00 37.03 1.90
2573 2693 7.042051 GCAATGTTCATACACGGTAGATATTGT 60.042 37.037 0.00 0.00 37.03 2.71
2574 2694 8.487970 CAATGTTCATACACGGTAGATATTGTC 58.512 37.037 0.00 0.00 37.03 3.18
2575 2695 6.203647 TGTTCATACACGGTAGATATTGTCG 58.796 40.000 0.00 0.00 0.00 4.35
2576 2696 6.183360 TGTTCATACACGGTAGATATTGTCGT 60.183 38.462 0.00 0.00 34.19 4.34
2577 2697 6.381481 TCATACACGGTAGATATTGTCGTT 57.619 37.500 0.00 0.00 31.35 3.85
2578 2698 6.203647 TCATACACGGTAGATATTGTCGTTG 58.796 40.000 0.00 0.00 31.35 4.10
2579 2699 3.777478 ACACGGTAGATATTGTCGTTGG 58.223 45.455 0.00 0.00 31.35 3.77
2580 2700 3.444742 ACACGGTAGATATTGTCGTTGGA 59.555 43.478 0.00 0.00 31.35 3.53
2581 2701 4.042398 CACGGTAGATATTGTCGTTGGAG 58.958 47.826 0.00 0.00 31.35 3.86
2582 2702 3.067742 ACGGTAGATATTGTCGTTGGAGG 59.932 47.826 0.00 0.00 0.00 4.30
2583 2703 3.317149 CGGTAGATATTGTCGTTGGAGGA 59.683 47.826 0.00 0.00 0.00 3.71
2584 2704 4.618965 GGTAGATATTGTCGTTGGAGGAC 58.381 47.826 0.00 0.00 33.90 3.85
2585 2705 4.341520 GGTAGATATTGTCGTTGGAGGACT 59.658 45.833 2.96 0.00 34.37 3.85
2586 2706 4.392921 AGATATTGTCGTTGGAGGACTG 57.607 45.455 2.96 0.00 34.37 3.51
2587 2707 4.023980 AGATATTGTCGTTGGAGGACTGA 58.976 43.478 2.96 0.00 34.37 3.41
2588 2708 4.466370 AGATATTGTCGTTGGAGGACTGAA 59.534 41.667 2.96 0.00 34.37 3.02
2589 2709 2.234300 TTGTCGTTGGAGGACTGAAC 57.766 50.000 2.96 0.00 34.37 3.18
2590 2710 1.116308 TGTCGTTGGAGGACTGAACA 58.884 50.000 2.96 0.00 34.37 3.18
2591 2711 1.202486 TGTCGTTGGAGGACTGAACAC 60.202 52.381 2.96 0.00 34.37 3.32
2592 2712 0.391597 TCGTTGGAGGACTGAACACC 59.608 55.000 0.00 0.00 0.00 4.16
2593 2713 0.105964 CGTTGGAGGACTGAACACCA 59.894 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.872021 CCTCCTCGACAACGCTATGC 60.872 60.000 0.00 0.00 39.58 3.14
55 56 0.739561 GACCTCCTCGACAACGCTAT 59.260 55.000 0.00 0.00 39.58 2.97
62 63 2.675423 CCCACGACCTCCTCGACA 60.675 66.667 0.00 0.00 46.14 4.35
97 103 2.989881 TTGCGACGAGATCCAGCGT 61.990 57.895 0.00 5.68 44.33 5.07
256 262 4.192453 AACACCCGAAACCGCCCA 62.192 61.111 0.00 0.00 0.00 5.36
349 368 0.175760 GAAGCACGACCATGAGGCTA 59.824 55.000 0.00 0.00 39.06 3.93
423 442 2.108601 CCGTAGATCTACCCCTCTCCTT 59.891 54.545 24.01 0.00 32.61 3.36
468 488 0.974383 ACCTTCTCGAAACCCGACAT 59.026 50.000 0.00 0.00 43.23 3.06
548 568 4.812476 CAATCGCGTCGGGGCTCA 62.812 66.667 5.77 0.00 0.00 4.26
552 573 4.891727 CTCCCAATCGCGTCGGGG 62.892 72.222 23.51 22.06 40.68 5.73
556 577 0.802607 GTCAGACTCCCAATCGCGTC 60.803 60.000 5.77 0.00 0.00 5.19
562 583 1.599047 CGCCTGTCAGACTCCCAAT 59.401 57.895 0.00 0.00 0.00 3.16
649 670 4.514577 CCGCTTCTCGTCCGCCAT 62.515 66.667 0.00 0.00 36.19 4.40
669 691 0.040425 AGCGAACAAACATGAACGCC 60.040 50.000 0.00 0.00 45.66 5.68
676 698 2.549754 CAGAAGGACAGCGAACAAACAT 59.450 45.455 0.00 0.00 0.00 2.71
680 702 2.210116 GTTCAGAAGGACAGCGAACAA 58.790 47.619 0.00 0.00 36.75 2.83
681 703 1.865865 GTTCAGAAGGACAGCGAACA 58.134 50.000 0.00 0.00 36.75 3.18
693 715 2.094494 TGCTTTTGGTTTGCGTTCAGAA 60.094 40.909 0.00 0.00 0.00 3.02
725 783 0.801836 GTTCGGCCCATTGCATTTCG 60.802 55.000 0.00 0.00 43.89 3.46
735 793 4.912485 TGTTTCGCGTTCGGCCCA 62.912 61.111 5.77 0.00 38.94 5.36
773 831 1.564622 CAAACGGACAGACACGCAG 59.435 57.895 0.00 0.00 0.00 5.18
774 832 1.885388 CCAAACGGACAGACACGCA 60.885 57.895 0.00 0.00 0.00 5.24
797 864 3.698463 GTCCGCGTGTGTCCGTTG 61.698 66.667 4.92 0.00 0.00 4.10
820 887 2.029244 CACAACGCATTGATCGTACCTC 59.971 50.000 0.00 0.00 39.48 3.85
903 973 4.649977 CGTACACGTTTTGTTTTTCCTGA 58.350 39.130 0.00 0.00 39.91 3.86
954 1063 5.007823 CCGTCACGTTCTATGTATCTCTTCT 59.992 44.000 0.00 0.00 0.00 2.85
1408 1523 4.920112 CACGTTCACCGCCCACCA 62.920 66.667 0.00 0.00 41.42 4.17
1640 1758 6.375736 TCTTCCGTAGCTCCATATGAATCTAG 59.624 42.308 3.65 0.00 0.00 2.43
1676 1794 8.279800 CACTCAAACGTGAATCTATTGTGTAAA 58.720 33.333 0.00 0.00 37.06 2.01
1739 1859 7.646446 ACAAAAACAACCTCAAAACTAACAC 57.354 32.000 0.00 0.00 0.00 3.32
1744 1864 8.341903 CAAGAAAACAAAAACAACCTCAAAACT 58.658 29.630 0.00 0.00 0.00 2.66
1767 1887 0.597377 GCTGGGGTGTTTTTCGCAAG 60.597 55.000 0.00 0.00 0.00 4.01
1773 1893 4.407296 TGTTTATTGAGCTGGGGTGTTTTT 59.593 37.500 0.00 0.00 0.00 1.94
1795 1915 5.815222 TGTTGTGTATCATCGGTTATCCTTG 59.185 40.000 0.00 0.00 0.00 3.61
1807 1927 4.275689 CCTGTGTTGTGTGTTGTGTATCAT 59.724 41.667 0.00 0.00 0.00 2.45
1808 1928 3.625313 CCTGTGTTGTGTGTTGTGTATCA 59.375 43.478 0.00 0.00 0.00 2.15
1810 1930 3.616219 ACCTGTGTTGTGTGTTGTGTAT 58.384 40.909 0.00 0.00 0.00 2.29
1824 1944 3.137544 TGGGTGTAATTCTCAACCTGTGT 59.862 43.478 15.54 0.00 42.57 3.72
1835 1955 1.279846 TCCGGAACCTGGGTGTAATTC 59.720 52.381 0.00 0.00 0.00 2.17
1842 1962 2.284699 CTCCTCCGGAACCTGGGT 60.285 66.667 5.23 0.00 0.00 4.51
1848 1968 2.046217 GGTTGGCTCCTCCGGAAC 60.046 66.667 5.23 0.00 37.80 3.62
1850 1970 4.649705 TGGGTTGGCTCCTCCGGA 62.650 66.667 2.93 2.93 37.80 5.14
1853 1973 1.603739 GTGTTGGGTTGGCTCCTCC 60.604 63.158 0.00 0.00 0.00 4.30
1920 2040 1.466025 TAACACGGTCAGGTCGGCTT 61.466 55.000 0.00 0.00 0.00 4.35
1926 2046 1.217244 GCGGATAACACGGTCAGGT 59.783 57.895 0.00 0.00 0.00 4.00
1928 2048 0.806102 CCTGCGGATAACACGGTCAG 60.806 60.000 0.00 0.00 0.00 3.51
1934 2054 0.179045 ATCCTGCCTGCGGATAACAC 60.179 55.000 11.88 0.00 39.44 3.32
1942 2062 2.100991 GCGAAAATCCTGCCTGCG 59.899 61.111 0.00 0.00 0.00 5.18
1943 2063 1.922135 TTCGCGAAAATCCTGCCTGC 61.922 55.000 21.14 0.00 0.00 4.85
1945 2065 1.635663 CGTTCGCGAAAATCCTGCCT 61.636 55.000 25.24 0.00 44.71 4.75
1954 2074 2.017783 CGACTTCCCGTTCGCGAAA 61.018 57.895 25.24 4.71 44.71 3.46
1957 2077 3.170585 GTCGACTTCCCGTTCGCG 61.171 66.667 8.70 0.00 40.93 5.87
1983 2103 2.296792 CGGCATGTTGGTTCATATGGA 58.703 47.619 2.13 0.00 0.00 3.41
1989 2109 0.109532 TTCTCCGGCATGTTGGTTCA 59.890 50.000 0.00 0.00 0.00 3.18
1991 2111 1.244019 GCTTCTCCGGCATGTTGGTT 61.244 55.000 0.00 0.00 0.00 3.67
1993 2113 1.033746 ATGCTTCTCCGGCATGTTGG 61.034 55.000 0.00 0.00 46.85 3.77
1999 2119 1.382522 GATTCAATGCTTCTCCGGCA 58.617 50.000 0.00 0.00 44.05 5.69
2001 2121 0.940126 CCGATTCAATGCTTCTCCGG 59.060 55.000 0.00 0.00 0.00 5.14
2015 2135 0.399075 AAACCGGTGGTTCTCCGATT 59.601 50.000 8.52 0.00 46.20 3.34
2018 2138 0.533308 TTCAAACCGGTGGTTCTCCG 60.533 55.000 8.52 1.92 46.20 4.63
2058 2178 1.834263 AGATTTTCCTCCCTCCTGTCG 59.166 52.381 0.00 0.00 0.00 4.35
2062 2182 0.922626 GCCAGATTTTCCTCCCTCCT 59.077 55.000 0.00 0.00 0.00 3.69
2067 2187 2.168728 AGTCTACGCCAGATTTTCCTCC 59.831 50.000 0.00 0.00 35.17 4.30
2077 2197 0.603569 AGTGGTCAAGTCTACGCCAG 59.396 55.000 0.00 0.00 0.00 4.85
2084 2204 1.794714 ACTGGTGAGTGGTCAAGTCT 58.205 50.000 0.00 0.00 33.27 3.24
2085 2205 3.006967 ACATACTGGTGAGTGGTCAAGTC 59.993 47.826 0.00 0.00 33.27 3.01
2087 2207 3.329386 CACATACTGGTGAGTGGTCAAG 58.671 50.000 0.00 0.00 41.32 3.02
2088 2208 2.549992 GCACATACTGGTGAGTGGTCAA 60.550 50.000 0.00 0.00 41.32 3.18
2090 2210 1.001974 TGCACATACTGGTGAGTGGTC 59.998 52.381 0.00 0.00 41.32 4.02
2096 2216 2.028420 GCATCTGCACATACTGGTGA 57.972 50.000 0.00 0.00 41.32 4.02
2139 2259 0.179097 CCGAGCCTTGGAGCTTCTAC 60.179 60.000 0.00 0.00 45.15 2.59
2142 2262 2.821810 GCCGAGCCTTGGAGCTTC 60.822 66.667 0.80 0.00 45.15 3.86
2185 2305 3.214328 CTTGGTTTTGTGCTCTGGTAGT 58.786 45.455 0.00 0.00 0.00 2.73
2190 2310 1.134753 TGTGCTTGGTTTTGTGCTCTG 59.865 47.619 0.00 0.00 0.00 3.35
2206 2326 4.030452 GCGTCAGTGGCCTTGTGC 62.030 66.667 3.32 8.01 40.16 4.57
2225 2345 3.830192 CCCATTCAAGGCAGGCGC 61.830 66.667 0.00 0.00 37.44 6.53
2230 2350 1.631405 CAGGTTTCCCATTCAAGGCA 58.369 50.000 0.00 0.00 0.00 4.75
2235 2355 1.146774 TGGAAGCAGGTTTCCCATTCA 59.853 47.619 11.67 0.00 44.93 2.57
2238 2358 3.437052 GGATATGGAAGCAGGTTTCCCAT 60.437 47.826 11.67 10.67 44.93 4.00
2248 2368 1.557371 TCGTTGGTGGATATGGAAGCA 59.443 47.619 0.00 0.00 0.00 3.91
2249 2369 1.940613 GTCGTTGGTGGATATGGAAGC 59.059 52.381 0.00 0.00 0.00 3.86
2250 2370 2.561569 GGTCGTTGGTGGATATGGAAG 58.438 52.381 0.00 0.00 0.00 3.46
2251 2371 1.134640 CGGTCGTTGGTGGATATGGAA 60.135 52.381 0.00 0.00 0.00 3.53
2252 2372 0.462375 CGGTCGTTGGTGGATATGGA 59.538 55.000 0.00 0.00 0.00 3.41
2253 2373 1.157870 GCGGTCGTTGGTGGATATGG 61.158 60.000 0.00 0.00 0.00 2.74
2254 2374 1.157870 GGCGGTCGTTGGTGGATATG 61.158 60.000 0.00 0.00 0.00 1.78
2255 2375 1.145377 GGCGGTCGTTGGTGGATAT 59.855 57.895 0.00 0.00 0.00 1.63
2256 2376 2.580276 GGCGGTCGTTGGTGGATA 59.420 61.111 0.00 0.00 0.00 2.59
2272 2392 1.464608 CTAGTGAAATGTGGTGTGCGG 59.535 52.381 0.00 0.00 0.00 5.69
2273 2393 2.412870 TCTAGTGAAATGTGGTGTGCG 58.587 47.619 0.00 0.00 0.00 5.34
2282 2402 1.524355 CGCTGCCGATCTAGTGAAATG 59.476 52.381 0.00 0.00 36.29 2.32
2311 2431 3.110178 GAAACCGACACCCTCGCG 61.110 66.667 0.00 0.00 41.46 5.87
2312 2432 1.595929 TTGAAACCGACACCCTCGC 60.596 57.895 0.00 0.00 41.46 5.03
2313 2433 1.554042 CGTTGAAACCGACACCCTCG 61.554 60.000 0.00 0.00 42.54 4.63
2314 2434 0.249573 TCGTTGAAACCGACACCCTC 60.250 55.000 0.00 0.00 0.00 4.30
2315 2435 0.395312 ATCGTTGAAACCGACACCCT 59.605 50.000 0.00 0.00 37.12 4.34
2316 2436 0.515564 CATCGTTGAAACCGACACCC 59.484 55.000 0.00 0.00 37.12 4.61
2317 2437 1.223187 ACATCGTTGAAACCGACACC 58.777 50.000 0.00 0.00 37.12 4.16
2318 2438 2.156310 GGTACATCGTTGAAACCGACAC 59.844 50.000 0.00 0.00 37.12 3.67
2319 2439 2.406130 GGTACATCGTTGAAACCGACA 58.594 47.619 0.00 0.00 37.12 4.35
2320 2440 1.728425 GGGTACATCGTTGAAACCGAC 59.272 52.381 0.00 0.00 37.12 4.79
2321 2441 1.343789 TGGGTACATCGTTGAAACCGA 59.656 47.619 0.00 2.47 38.89 4.69
2322 2442 1.798283 TGGGTACATCGTTGAAACCG 58.202 50.000 0.00 0.00 34.95 4.44
2323 2443 3.078837 ACATGGGTACATCGTTGAAACC 58.921 45.455 0.00 7.25 34.35 3.27
2324 2444 5.353123 ACATACATGGGTACATCGTTGAAAC 59.647 40.000 0.00 0.00 34.35 2.78
2325 2445 5.492895 ACATACATGGGTACATCGTTGAAA 58.507 37.500 0.00 0.00 34.35 2.69
2326 2446 5.092554 ACATACATGGGTACATCGTTGAA 57.907 39.130 0.00 0.00 34.35 2.69
2327 2447 4.746535 ACATACATGGGTACATCGTTGA 57.253 40.909 0.00 0.00 34.35 3.18
2328 2448 6.073276 CCATTACATACATGGGTACATCGTTG 60.073 42.308 0.00 0.00 38.05 4.10
2329 2449 5.995282 CCATTACATACATGGGTACATCGTT 59.005 40.000 0.00 0.00 38.05 3.85
2330 2450 5.071250 ACCATTACATACATGGGTACATCGT 59.929 40.000 0.00 0.00 45.05 3.73
2331 2451 5.408299 CACCATTACATACATGGGTACATCG 59.592 44.000 0.00 0.00 45.05 3.84
2332 2452 6.530120 TCACCATTACATACATGGGTACATC 58.470 40.000 0.00 0.00 45.05 3.06
2333 2453 6.508030 TCACCATTACATACATGGGTACAT 57.492 37.500 0.00 0.00 45.05 2.29
2334 2454 5.959583 TCACCATTACATACATGGGTACA 57.040 39.130 0.00 0.00 45.05 2.90
2335 2455 6.354130 ACTTCACCATTACATACATGGGTAC 58.646 40.000 0.00 0.00 45.05 3.34
2336 2456 6.569127 ACTTCACCATTACATACATGGGTA 57.431 37.500 0.00 0.00 45.05 3.69
2337 2457 5.450818 ACTTCACCATTACATACATGGGT 57.549 39.130 0.00 0.00 45.05 4.51
2338 2458 7.054124 ACTAACTTCACCATTACATACATGGG 58.946 38.462 0.00 0.00 45.05 4.00
2339 2459 9.261180 CTACTAACTTCACCATTACATACATGG 57.739 37.037 0.00 0.00 46.07 3.66
2344 2464 9.595823 GCTTTCTACTAACTTCACCATTACATA 57.404 33.333 0.00 0.00 0.00 2.29
2345 2465 7.553044 GGCTTTCTACTAACTTCACCATTACAT 59.447 37.037 0.00 0.00 0.00 2.29
2346 2466 6.877322 GGCTTTCTACTAACTTCACCATTACA 59.123 38.462 0.00 0.00 0.00 2.41
2347 2467 6.877322 TGGCTTTCTACTAACTTCACCATTAC 59.123 38.462 0.00 0.00 0.00 1.89
2348 2468 7.011499 TGGCTTTCTACTAACTTCACCATTA 57.989 36.000 0.00 0.00 0.00 1.90
2349 2469 5.876357 TGGCTTTCTACTAACTTCACCATT 58.124 37.500 0.00 0.00 0.00 3.16
2350 2470 5.248477 TCTGGCTTTCTACTAACTTCACCAT 59.752 40.000 0.00 0.00 0.00 3.55
2351 2471 4.591498 TCTGGCTTTCTACTAACTTCACCA 59.409 41.667 0.00 0.00 0.00 4.17
2352 2472 4.930405 GTCTGGCTTTCTACTAACTTCACC 59.070 45.833 0.00 0.00 0.00 4.02
2353 2473 5.785243 AGTCTGGCTTTCTACTAACTTCAC 58.215 41.667 0.00 0.00 0.00 3.18
2354 2474 6.420913 AAGTCTGGCTTTCTACTAACTTCA 57.579 37.500 0.00 0.00 32.57 3.02
2355 2475 8.251721 TGATAAGTCTGGCTTTCTACTAACTTC 58.748 37.037 0.00 0.00 38.57 3.01
2356 2476 8.135382 TGATAAGTCTGGCTTTCTACTAACTT 57.865 34.615 0.00 0.00 38.57 2.66
2357 2477 7.719871 TGATAAGTCTGGCTTTCTACTAACT 57.280 36.000 0.00 0.00 38.57 2.24
2358 2478 9.465985 GTATGATAAGTCTGGCTTTCTACTAAC 57.534 37.037 0.00 0.00 38.57 2.34
2359 2479 8.350722 CGTATGATAAGTCTGGCTTTCTACTAA 58.649 37.037 0.00 0.00 38.57 2.24
2360 2480 7.501559 ACGTATGATAAGTCTGGCTTTCTACTA 59.498 37.037 0.00 0.00 38.57 1.82
2361 2481 6.321690 ACGTATGATAAGTCTGGCTTTCTACT 59.678 38.462 0.00 0.00 38.57 2.57
2362 2482 6.505272 ACGTATGATAAGTCTGGCTTTCTAC 58.495 40.000 0.00 0.00 38.57 2.59
2363 2483 6.710597 ACGTATGATAAGTCTGGCTTTCTA 57.289 37.500 0.00 0.00 38.57 2.10
2364 2484 5.599999 ACGTATGATAAGTCTGGCTTTCT 57.400 39.130 0.00 0.00 38.57 2.52
2365 2485 7.652105 TGAATACGTATGATAAGTCTGGCTTTC 59.348 37.037 9.24 0.00 38.57 2.62
2366 2486 7.497595 TGAATACGTATGATAAGTCTGGCTTT 58.502 34.615 9.24 0.00 38.57 3.51
2367 2487 7.050970 TGAATACGTATGATAAGTCTGGCTT 57.949 36.000 9.24 0.00 41.05 4.35
2368 2488 6.650427 TGAATACGTATGATAAGTCTGGCT 57.350 37.500 9.24 0.00 0.00 4.75
2369 2489 7.598869 TGATTGAATACGTATGATAAGTCTGGC 59.401 37.037 9.24 0.00 0.00 4.85
2370 2490 9.133627 CTGATTGAATACGTATGATAAGTCTGG 57.866 37.037 9.24 0.00 0.00 3.86
2371 2491 9.133627 CCTGATTGAATACGTATGATAAGTCTG 57.866 37.037 9.24 7.18 0.00 3.51
2372 2492 9.078990 TCCTGATTGAATACGTATGATAAGTCT 57.921 33.333 9.24 0.00 0.00 3.24
2373 2493 9.862371 ATCCTGATTGAATACGTATGATAAGTC 57.138 33.333 9.24 2.28 0.00 3.01
2383 2503 9.667107 TCTTTTTCTTATCCTGATTGAATACGT 57.333 29.630 0.00 0.00 0.00 3.57
2394 2514 9.971922 ACTTGAATGTTTCTTTTTCTTATCCTG 57.028 29.630 0.00 0.00 0.00 3.86
2395 2515 9.971922 CACTTGAATGTTTCTTTTTCTTATCCT 57.028 29.630 0.00 0.00 0.00 3.24
2396 2516 9.750125 ACACTTGAATGTTTCTTTTTCTTATCC 57.250 29.630 0.00 0.00 0.00 2.59
2401 2521 9.450807 CGATTACACTTGAATGTTTCTTTTTCT 57.549 29.630 0.00 0.00 33.85 2.52
2402 2522 8.690840 CCGATTACACTTGAATGTTTCTTTTTC 58.309 33.333 0.00 0.00 33.85 2.29
2403 2523 8.410141 TCCGATTACACTTGAATGTTTCTTTTT 58.590 29.630 0.00 0.00 33.85 1.94
2404 2524 7.936584 TCCGATTACACTTGAATGTTTCTTTT 58.063 30.769 0.00 0.00 33.85 2.27
2405 2525 7.504924 TCCGATTACACTTGAATGTTTCTTT 57.495 32.000 0.00 0.00 33.85 2.52
2406 2526 6.348540 GCTCCGATTACACTTGAATGTTTCTT 60.349 38.462 0.00 0.00 33.85 2.52
2407 2527 5.122396 GCTCCGATTACACTTGAATGTTTCT 59.878 40.000 0.00 0.00 33.85 2.52
2408 2528 5.106712 TGCTCCGATTACACTTGAATGTTTC 60.107 40.000 0.00 0.00 33.85 2.78
2409 2529 4.759693 TGCTCCGATTACACTTGAATGTTT 59.240 37.500 0.00 0.00 33.85 2.83
2410 2530 4.323417 TGCTCCGATTACACTTGAATGTT 58.677 39.130 0.00 0.00 33.85 2.71
2411 2531 3.937814 TGCTCCGATTACACTTGAATGT 58.062 40.909 0.00 0.00 36.56 2.71
2412 2532 4.631377 TCTTGCTCCGATTACACTTGAATG 59.369 41.667 0.00 0.00 0.00 2.67
2413 2533 4.631813 GTCTTGCTCCGATTACACTTGAAT 59.368 41.667 0.00 0.00 0.00 2.57
2414 2534 3.994392 GTCTTGCTCCGATTACACTTGAA 59.006 43.478 0.00 0.00 0.00 2.69
2415 2535 3.006430 TGTCTTGCTCCGATTACACTTGA 59.994 43.478 0.00 0.00 0.00 3.02
2416 2536 3.325870 TGTCTTGCTCCGATTACACTTG 58.674 45.455 0.00 0.00 0.00 3.16
2417 2537 3.678056 TGTCTTGCTCCGATTACACTT 57.322 42.857 0.00 0.00 0.00 3.16
2418 2538 3.195610 TGATGTCTTGCTCCGATTACACT 59.804 43.478 0.00 0.00 0.00 3.55
2419 2539 3.521560 TGATGTCTTGCTCCGATTACAC 58.478 45.455 0.00 0.00 0.00 2.90
2420 2540 3.885724 TGATGTCTTGCTCCGATTACA 57.114 42.857 0.00 0.00 0.00 2.41
2421 2541 4.371786 TGATGATGTCTTGCTCCGATTAC 58.628 43.478 0.00 0.00 0.00 1.89
2422 2542 4.100035 ACTGATGATGTCTTGCTCCGATTA 59.900 41.667 0.00 0.00 0.00 1.75
2423 2543 3.118482 ACTGATGATGTCTTGCTCCGATT 60.118 43.478 0.00 0.00 0.00 3.34
2424 2544 2.433604 ACTGATGATGTCTTGCTCCGAT 59.566 45.455 0.00 0.00 0.00 4.18
2425 2545 1.827344 ACTGATGATGTCTTGCTCCGA 59.173 47.619 0.00 0.00 0.00 4.55
2426 2546 1.931841 CACTGATGATGTCTTGCTCCG 59.068 52.381 0.00 0.00 0.00 4.63
2427 2547 2.093288 TCCACTGATGATGTCTTGCTCC 60.093 50.000 0.00 0.00 0.00 4.70
2428 2548 3.257469 TCCACTGATGATGTCTTGCTC 57.743 47.619 0.00 0.00 0.00 4.26
2429 2549 3.928005 ATCCACTGATGATGTCTTGCT 57.072 42.857 0.00 0.00 0.00 3.91
2430 2550 3.812053 GGTATCCACTGATGATGTCTTGC 59.188 47.826 0.00 0.00 32.18 4.01
2431 2551 5.027293 TGGTATCCACTGATGATGTCTTG 57.973 43.478 0.00 0.00 32.18 3.02
2432 2552 5.698741 TTGGTATCCACTGATGATGTCTT 57.301 39.130 0.00 0.00 30.78 3.01
2433 2553 5.698741 TTTGGTATCCACTGATGATGTCT 57.301 39.130 0.00 0.00 30.78 3.41
2434 2554 5.882557 AGTTTTGGTATCCACTGATGATGTC 59.117 40.000 0.00 0.00 30.78 3.06
2435 2555 5.819991 AGTTTTGGTATCCACTGATGATGT 58.180 37.500 0.00 0.00 30.78 3.06
2436 2556 6.823182 TGTAGTTTTGGTATCCACTGATGATG 59.177 38.462 0.00 0.00 30.78 3.07
2437 2557 6.957631 TGTAGTTTTGGTATCCACTGATGAT 58.042 36.000 0.00 0.00 30.78 2.45
2438 2558 6.013725 ACTGTAGTTTTGGTATCCACTGATGA 60.014 38.462 0.00 0.00 30.78 2.92
2439 2559 6.173339 ACTGTAGTTTTGGTATCCACTGATG 58.827 40.000 0.00 0.00 30.78 3.07
2440 2560 6.374417 ACTGTAGTTTTGGTATCCACTGAT 57.626 37.500 0.00 0.00 30.78 2.90
2441 2561 5.818678 ACTGTAGTTTTGGTATCCACTGA 57.181 39.130 0.00 0.00 30.78 3.41
2442 2562 6.460781 TGTACTGTAGTTTTGGTATCCACTG 58.539 40.000 0.00 0.00 30.78 3.66
2443 2563 6.675413 TGTACTGTAGTTTTGGTATCCACT 57.325 37.500 0.00 0.00 30.78 4.00
2444 2564 6.707161 TGTTGTACTGTAGTTTTGGTATCCAC 59.293 38.462 0.00 0.00 30.78 4.02
2445 2565 6.707161 GTGTTGTACTGTAGTTTTGGTATCCA 59.293 38.462 0.00 0.00 0.00 3.41
2446 2566 6.707161 TGTGTTGTACTGTAGTTTTGGTATCC 59.293 38.462 0.00 0.00 0.00 2.59
2447 2567 7.718272 TGTGTTGTACTGTAGTTTTGGTATC 57.282 36.000 0.00 0.00 0.00 2.24
2448 2568 8.154856 AGATGTGTTGTACTGTAGTTTTGGTAT 58.845 33.333 0.00 0.00 0.00 2.73
2449 2569 7.502696 AGATGTGTTGTACTGTAGTTTTGGTA 58.497 34.615 0.00 0.00 0.00 3.25
2450 2570 6.354130 AGATGTGTTGTACTGTAGTTTTGGT 58.646 36.000 0.00 0.00 0.00 3.67
2451 2571 6.073222 GGAGATGTGTTGTACTGTAGTTTTGG 60.073 42.308 0.00 0.00 0.00 3.28
2452 2572 6.481976 TGGAGATGTGTTGTACTGTAGTTTTG 59.518 38.462 0.00 0.00 0.00 2.44
2453 2573 6.588204 TGGAGATGTGTTGTACTGTAGTTTT 58.412 36.000 0.00 0.00 0.00 2.43
2454 2574 6.169557 TGGAGATGTGTTGTACTGTAGTTT 57.830 37.500 0.00 0.00 0.00 2.66
2455 2575 5.801531 TGGAGATGTGTTGTACTGTAGTT 57.198 39.130 0.00 0.00 0.00 2.24
2456 2576 6.405953 GCTATGGAGATGTGTTGTACTGTAGT 60.406 42.308 0.00 0.00 0.00 2.73
2457 2577 5.980116 GCTATGGAGATGTGTTGTACTGTAG 59.020 44.000 0.00 0.00 0.00 2.74
2458 2578 5.163447 GGCTATGGAGATGTGTTGTACTGTA 60.163 44.000 0.00 0.00 0.00 2.74
2459 2579 4.383118 GGCTATGGAGATGTGTTGTACTGT 60.383 45.833 0.00 0.00 0.00 3.55
2460 2580 4.122776 GGCTATGGAGATGTGTTGTACTG 58.877 47.826 0.00 0.00 0.00 2.74
2461 2581 3.774766 TGGCTATGGAGATGTGTTGTACT 59.225 43.478 0.00 0.00 0.00 2.73
2462 2582 3.871594 GTGGCTATGGAGATGTGTTGTAC 59.128 47.826 0.00 0.00 0.00 2.90
2463 2583 3.118408 GGTGGCTATGGAGATGTGTTGTA 60.118 47.826 0.00 0.00 0.00 2.41
2464 2584 2.356125 GGTGGCTATGGAGATGTGTTGT 60.356 50.000 0.00 0.00 0.00 3.32
2465 2585 2.292267 GGTGGCTATGGAGATGTGTTG 58.708 52.381 0.00 0.00 0.00 3.33
2466 2586 1.915489 TGGTGGCTATGGAGATGTGTT 59.085 47.619 0.00 0.00 0.00 3.32
2467 2587 1.487976 CTGGTGGCTATGGAGATGTGT 59.512 52.381 0.00 0.00 0.00 3.72
2468 2588 1.764723 TCTGGTGGCTATGGAGATGTG 59.235 52.381 0.00 0.00 0.00 3.21
2469 2589 2.171448 GTTCTGGTGGCTATGGAGATGT 59.829 50.000 0.00 0.00 0.00 3.06
2470 2590 2.804572 CGTTCTGGTGGCTATGGAGATG 60.805 54.545 0.00 0.00 0.00 2.90
2471 2591 1.414181 CGTTCTGGTGGCTATGGAGAT 59.586 52.381 0.00 0.00 0.00 2.75
2472 2592 0.824109 CGTTCTGGTGGCTATGGAGA 59.176 55.000 0.00 0.00 0.00 3.71
2473 2593 0.824109 TCGTTCTGGTGGCTATGGAG 59.176 55.000 0.00 0.00 0.00 3.86
2474 2594 1.496060 ATCGTTCTGGTGGCTATGGA 58.504 50.000 0.00 0.00 0.00 3.41
2475 2595 2.365617 ACTATCGTTCTGGTGGCTATGG 59.634 50.000 0.00 0.00 0.00 2.74
2476 2596 3.735237 ACTATCGTTCTGGTGGCTATG 57.265 47.619 0.00 0.00 0.00 2.23
2477 2597 4.212716 TGTACTATCGTTCTGGTGGCTAT 58.787 43.478 0.00 0.00 0.00 2.97
2478 2598 3.623703 TGTACTATCGTTCTGGTGGCTA 58.376 45.455 0.00 0.00 0.00 3.93
2479 2599 2.453521 TGTACTATCGTTCTGGTGGCT 58.546 47.619 0.00 0.00 0.00 4.75
2480 2600 2.928116 GTTGTACTATCGTTCTGGTGGC 59.072 50.000 0.00 0.00 0.00 5.01
2481 2601 3.924686 GTGTTGTACTATCGTTCTGGTGG 59.075 47.826 0.00 0.00 0.00 4.61
2482 2602 4.552355 TGTGTTGTACTATCGTTCTGGTG 58.448 43.478 0.00 0.00 0.00 4.17
2483 2603 4.859304 TGTGTTGTACTATCGTTCTGGT 57.141 40.909 0.00 0.00 0.00 4.00
2484 2604 6.367695 TCAAATGTGTTGTACTATCGTTCTGG 59.632 38.462 0.00 0.00 0.00 3.86
2485 2605 7.346208 TCAAATGTGTTGTACTATCGTTCTG 57.654 36.000 0.00 0.00 0.00 3.02
2486 2606 7.870954 TCTTCAAATGTGTTGTACTATCGTTCT 59.129 33.333 0.00 0.00 0.00 3.01
2487 2607 8.014322 TCTTCAAATGTGTTGTACTATCGTTC 57.986 34.615 0.00 0.00 0.00 3.95
2488 2608 7.956420 TCTTCAAATGTGTTGTACTATCGTT 57.044 32.000 0.00 0.00 0.00 3.85
2489 2609 7.956420 TTCTTCAAATGTGTTGTACTATCGT 57.044 32.000 0.00 0.00 0.00 3.73
2490 2610 8.655970 TCATTCTTCAAATGTGTTGTACTATCG 58.344 33.333 0.00 0.00 0.00 2.92
2494 2614 9.467258 CATTTCATTCTTCAAATGTGTTGTACT 57.533 29.630 0.00 0.00 35.91 2.73
2495 2615 9.248291 ACATTTCATTCTTCAAATGTGTTGTAC 57.752 29.630 8.79 0.00 46.62 2.90
2522 2642 9.515226 GCATCCTTTAATTTACCCTGTATATGA 57.485 33.333 0.00 0.00 0.00 2.15
2523 2643 9.295825 TGCATCCTTTAATTTACCCTGTATATG 57.704 33.333 0.00 0.00 0.00 1.78
2524 2644 9.875708 TTGCATCCTTTAATTTACCCTGTATAT 57.124 29.630 0.00 0.00 0.00 0.86
2525 2645 9.875708 ATTGCATCCTTTAATTTACCCTGTATA 57.124 29.630 0.00 0.00 0.00 1.47
2526 2646 8.641541 CATTGCATCCTTTAATTTACCCTGTAT 58.358 33.333 0.00 0.00 0.00 2.29
2527 2647 7.617723 ACATTGCATCCTTTAATTTACCCTGTA 59.382 33.333 0.00 0.00 0.00 2.74
2528 2648 6.440328 ACATTGCATCCTTTAATTTACCCTGT 59.560 34.615 0.00 0.00 0.00 4.00
2529 2649 6.877236 ACATTGCATCCTTTAATTTACCCTG 58.123 36.000 0.00 0.00 0.00 4.45
2530 2650 7.180051 TGAACATTGCATCCTTTAATTTACCCT 59.820 33.333 0.00 0.00 0.00 4.34
2531 2651 7.327214 TGAACATTGCATCCTTTAATTTACCC 58.673 34.615 0.00 0.00 0.00 3.69
2532 2652 8.947055 ATGAACATTGCATCCTTTAATTTACC 57.053 30.769 0.00 0.00 0.00 2.85
2535 2655 9.369904 GTGTATGAACATTGCATCCTTTAATTT 57.630 29.630 0.00 0.00 38.08 1.82
2536 2656 7.701924 CGTGTATGAACATTGCATCCTTTAATT 59.298 33.333 0.00 0.00 38.08 1.40
2537 2657 7.195646 CGTGTATGAACATTGCATCCTTTAAT 58.804 34.615 0.00 0.00 38.08 1.40
2538 2658 6.404184 CCGTGTATGAACATTGCATCCTTTAA 60.404 38.462 0.00 0.00 38.08 1.52
2539 2659 5.065859 CCGTGTATGAACATTGCATCCTTTA 59.934 40.000 0.00 0.00 38.08 1.85
2540 2660 4.142403 CCGTGTATGAACATTGCATCCTTT 60.142 41.667 0.00 0.00 38.08 3.11
2541 2661 3.378112 CCGTGTATGAACATTGCATCCTT 59.622 43.478 0.00 0.00 38.08 3.36
2542 2662 2.945008 CCGTGTATGAACATTGCATCCT 59.055 45.455 0.00 0.00 38.08 3.24
2543 2663 2.682856 ACCGTGTATGAACATTGCATCC 59.317 45.455 0.00 0.00 38.08 3.51
2544 2664 4.808895 TCTACCGTGTATGAACATTGCATC 59.191 41.667 0.00 0.00 38.08 3.91
2545 2665 4.765273 TCTACCGTGTATGAACATTGCAT 58.235 39.130 0.00 0.00 38.08 3.96
2546 2666 4.195225 TCTACCGTGTATGAACATTGCA 57.805 40.909 0.00 0.00 38.08 4.08
2547 2667 7.042051 ACAATATCTACCGTGTATGAACATTGC 60.042 37.037 0.00 0.00 38.08 3.56
2548 2668 8.365399 ACAATATCTACCGTGTATGAACATTG 57.635 34.615 0.00 0.00 38.08 2.82
2549 2669 7.381408 CGACAATATCTACCGTGTATGAACATT 59.619 37.037 0.00 0.00 38.08 2.71
2550 2670 6.861572 CGACAATATCTACCGTGTATGAACAT 59.138 38.462 0.00 0.00 38.08 2.71
2551 2671 6.183360 ACGACAATATCTACCGTGTATGAACA 60.183 38.462 0.00 0.00 31.85 3.18
2552 2672 6.204359 ACGACAATATCTACCGTGTATGAAC 58.796 40.000 0.00 0.00 31.85 3.18
2553 2673 6.381481 ACGACAATATCTACCGTGTATGAA 57.619 37.500 0.00 0.00 31.85 2.57
2554 2674 6.203647 CAACGACAATATCTACCGTGTATGA 58.796 40.000 0.00 0.00 33.48 2.15
2555 2675 5.401376 CCAACGACAATATCTACCGTGTATG 59.599 44.000 0.00 0.00 33.48 2.39
2556 2676 5.300034 TCCAACGACAATATCTACCGTGTAT 59.700 40.000 0.00 0.00 33.48 2.29
2557 2677 4.639755 TCCAACGACAATATCTACCGTGTA 59.360 41.667 0.00 0.00 33.48 2.90
2558 2678 3.444742 TCCAACGACAATATCTACCGTGT 59.555 43.478 0.00 0.00 33.48 4.49
2559 2679 4.036567 TCCAACGACAATATCTACCGTG 57.963 45.455 0.00 0.00 33.48 4.94
2560 2680 3.067742 CCTCCAACGACAATATCTACCGT 59.932 47.826 0.00 0.00 34.74 4.83
2561 2681 3.317149 TCCTCCAACGACAATATCTACCG 59.683 47.826 0.00 0.00 0.00 4.02
2562 2682 4.341520 AGTCCTCCAACGACAATATCTACC 59.658 45.833 0.00 0.00 32.41 3.18
2563 2683 5.067413 TCAGTCCTCCAACGACAATATCTAC 59.933 44.000 0.00 0.00 32.41 2.59
2564 2684 5.198207 TCAGTCCTCCAACGACAATATCTA 58.802 41.667 0.00 0.00 32.41 1.98
2565 2685 4.023980 TCAGTCCTCCAACGACAATATCT 58.976 43.478 0.00 0.00 32.41 1.98
2566 2686 4.386867 TCAGTCCTCCAACGACAATATC 57.613 45.455 0.00 0.00 32.41 1.63
2567 2687 4.020573 TGTTCAGTCCTCCAACGACAATAT 60.021 41.667 0.00 0.00 32.41 1.28
2568 2688 3.322541 TGTTCAGTCCTCCAACGACAATA 59.677 43.478 0.00 0.00 32.41 1.90
2569 2689 2.104111 TGTTCAGTCCTCCAACGACAAT 59.896 45.455 0.00 0.00 32.41 2.71
2570 2690 1.483004 TGTTCAGTCCTCCAACGACAA 59.517 47.619 0.00 0.00 32.41 3.18
2571 2691 1.116308 TGTTCAGTCCTCCAACGACA 58.884 50.000 0.00 0.00 32.41 4.35
2572 2692 1.499049 GTGTTCAGTCCTCCAACGAC 58.501 55.000 0.00 0.00 0.00 4.34
2573 2693 0.391597 GGTGTTCAGTCCTCCAACGA 59.608 55.000 0.00 0.00 0.00 3.85
2574 2694 0.105964 TGGTGTTCAGTCCTCCAACG 59.894 55.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.