Multiple sequence alignment - TraesCS3D01G250000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G250000 chr3D 100.000 2597 0 0 1 2597 349975429 349972833 0.000000e+00 4796.0
1 TraesCS3D01G250000 chr3D 94.024 753 37 4 855 1607 350793319 350792575 0.000000e+00 1134.0
2 TraesCS3D01G250000 chr3D 88.679 106 9 3 382 487 8993522 8993420 2.710000e-25 126.0
3 TraesCS3D01G250000 chr3D 83.544 79 9 4 519 596 182093318 182093393 1.290000e-08 71.3
4 TraesCS3D01G250000 chr3B 93.756 1041 50 3 597 1637 448864842 448863817 0.000000e+00 1548.0
5 TraesCS3D01G250000 chr3B 95.870 678 23 2 930 1607 449203704 449203032 0.000000e+00 1092.0
6 TraesCS3D01G250000 chr3B 94.162 668 25 7 1940 2597 448863725 448863062 0.000000e+00 1005.0
7 TraesCS3D01G250000 chr3B 92.188 128 10 0 1813 1940 637539463 637539336 5.710000e-42 182.0
8 TraesCS3D01G250000 chr3B 89.209 139 14 1 1805 1943 172724582 172724719 3.440000e-39 172.0
9 TraesCS3D01G250000 chr3B 88.667 150 4 4 776 917 449203903 449203759 1.240000e-38 171.0
10 TraesCS3D01G250000 chr3A 93.508 801 44 5 882 1678 468251839 468251043 0.000000e+00 1184.0
11 TraesCS3D01G250000 chr3A 93.899 754 39 4 855 1607 468517106 468516359 0.000000e+00 1131.0
12 TraesCS3D01G250000 chr3A 93.976 664 31 3 1940 2597 468250865 468250205 0.000000e+00 996.0
13 TraesCS3D01G250000 chr3A 92.254 284 19 2 597 880 468253847 468253567 1.450000e-107 399.0
14 TraesCS3D01G250000 chr3A 86.517 356 43 4 17 370 637605696 637605344 1.130000e-103 387.0
15 TraesCS3D01G250000 chr3A 94.776 134 7 0 1808 1941 593991291 593991158 2.620000e-50 209.0
16 TraesCS3D01G250000 chr3A 97.500 40 1 0 1640 1679 675182613 675182574 4.640000e-08 69.4
17 TraesCS3D01G250000 chr6A 91.515 495 38 3 1 493 58701075 58701567 0.000000e+00 678.0
18 TraesCS3D01G250000 chr6A 100.000 30 0 0 1715 1744 12080038 12080067 3.610000e-04 56.5
19 TraesCS3D01G250000 chr7D 90.361 498 39 6 9 499 47274548 47275043 0.000000e+00 645.0
20 TraesCS3D01G250000 chr7D 93.798 129 8 0 1812 1940 33995477 33995349 7.330000e-46 195.0
21 TraesCS3D01G250000 chr7B 89.558 498 46 5 1 496 746981750 746982243 6.100000e-176 627.0
22 TraesCS3D01G250000 chr1A 81.967 488 70 10 1 487 559884476 559884006 5.210000e-107 398.0
23 TraesCS3D01G250000 chr7A 93.571 140 8 1 1805 1943 85215258 85215397 9.420000e-50 207.0
24 TraesCS3D01G250000 chr7A 90.476 42 3 1 1632 1673 573093412 573093372 1.000000e-03 54.7
25 TraesCS3D01G250000 chr7A 100.000 29 0 0 1604 1632 721470320 721470348 1.000000e-03 54.7
26 TraesCS3D01G250000 chr1B 92.754 138 10 0 1809 1946 587986730 587986867 1.580000e-47 200.0
27 TraesCS3D01G250000 chr1D 92.537 134 10 0 1812 1945 204390188 204390321 2.640000e-45 193.0
28 TraesCS3D01G250000 chr1D 81.553 103 14 5 334 436 438997200 438997103 2.140000e-11 80.5
29 TraesCS3D01G250000 chr6D 91.045 134 12 0 1808 1941 63126972 63127105 5.710000e-42 182.0
30 TraesCS3D01G250000 chr6D 85.897 78 9 2 519 594 46943237 46943314 5.960000e-12 82.4
31 TraesCS3D01G250000 chr6D 96.970 33 1 0 1711 1743 36811685 36811717 3.610000e-04 56.5
32 TraesCS3D01G250000 chr5A 89.928 139 13 1 1805 1943 78959329 78959192 7.390000e-41 178.0
33 TraesCS3D01G250000 chr5A 88.000 75 6 3 519 592 607737898 607737970 4.600000e-13 86.1
34 TraesCS3D01G250000 chr5A 100.000 30 0 0 1715 1744 6521375 6521404 3.610000e-04 56.5
35 TraesCS3D01G250000 chr5D 91.892 74 3 3 519 591 505548296 505548225 1.640000e-17 100.0
36 TraesCS3D01G250000 chr5D 94.444 36 2 0 519 554 319311914 319311949 3.610000e-04 56.5
37 TraesCS3D01G250000 chr4D 89.333 75 6 2 519 592 498379364 498379437 2.750000e-15 93.5
38 TraesCS3D01G250000 chr4D 100.000 34 0 0 1711 1744 488741053 488741020 2.160000e-06 63.9
39 TraesCS3D01G250000 chr4D 97.143 35 1 0 1710 1744 394386469 394386503 2.790000e-05 60.2
40 TraesCS3D01G250000 chr4D 97.059 34 1 0 1711 1744 474951809 474951776 1.000000e-04 58.4
41 TraesCS3D01G250000 chr2B 89.189 74 7 1 519 591 768575188 768575261 9.900000e-15 91.6
42 TraesCS3D01G250000 chr2B 94.000 50 3 0 519 568 643187627 643187578 2.770000e-10 76.8
43 TraesCS3D01G250000 chr2B 93.023 43 3 0 1639 1681 541102066 541102024 2.160000e-06 63.9
44 TraesCS3D01G250000 chr2B 100.000 30 0 0 1715 1744 512624239 512624210 3.610000e-04 56.5
45 TraesCS3D01G250000 chr2B 96.875 32 1 0 1643 1674 729878898 729878867 1.000000e-03 54.7
46 TraesCS3D01G250000 chr4B 96.000 50 2 0 519 568 638370597 638370548 5.960000e-12 82.4
47 TraesCS3D01G250000 chr4B 90.000 50 4 1 1629 1678 573498113 573498065 2.160000e-06 63.9
48 TraesCS3D01G250000 chr2D 97.297 37 1 0 1645 1681 459838638 459838602 2.160000e-06 63.9
49 TraesCS3D01G250000 chr2D 96.970 33 1 0 1605 1637 566724633 566724601 3.610000e-04 56.5
50 TraesCS3D01G250000 chr5B 100.000 31 0 0 1711 1741 351865325 351865355 1.000000e-04 58.4
51 TraesCS3D01G250000 chrUn 96.970 33 1 0 1711 1743 349089860 349089892 3.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G250000 chr3D 349972833 349975429 2596 True 4796.000000 4796 100.0000 1 2597 1 chr3D.!!$R2 2596
1 TraesCS3D01G250000 chr3D 350792575 350793319 744 True 1134.000000 1134 94.0240 855 1607 1 chr3D.!!$R3 752
2 TraesCS3D01G250000 chr3B 448863062 448864842 1780 True 1276.500000 1548 93.9590 597 2597 2 chr3B.!!$R2 2000
3 TraesCS3D01G250000 chr3B 449203032 449203903 871 True 631.500000 1092 92.2685 776 1607 2 chr3B.!!$R3 831
4 TraesCS3D01G250000 chr3A 468516359 468517106 747 True 1131.000000 1131 93.8990 855 1607 1 chr3A.!!$R1 752
5 TraesCS3D01G250000 chr3A 468250205 468253847 3642 True 859.666667 1184 93.2460 597 2597 3 chr3A.!!$R5 2000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.035056 CTCCCATCACCACCTTGGAC 60.035 60.0 0.0 0.0 40.96 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 3695 0.037232 AACTACAGCTCCGCCAACTC 60.037 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.947147 GCCACCAACACCGCCAGA 62.947 66.667 0.00 0.00 0.00 3.86
18 19 2.978010 CCACCAACACCGCCAGAC 60.978 66.667 0.00 0.00 0.00 3.51
19 20 3.345808 CACCAACACCGCCAGACG 61.346 66.667 0.00 0.00 43.15 4.18
29 30 2.028484 GCCAGACGAACCACGACA 59.972 61.111 0.00 0.00 45.77 4.35
30 31 2.022129 GCCAGACGAACCACGACAG 61.022 63.158 0.00 0.00 45.77 3.51
31 32 2.022129 CCAGACGAACCACGACAGC 61.022 63.158 0.00 0.00 45.77 4.40
32 33 1.299850 CAGACGAACCACGACAGCA 60.300 57.895 0.00 0.00 45.77 4.41
33 34 1.299926 AGACGAACCACGACAGCAC 60.300 57.895 0.00 0.00 45.77 4.40
34 35 2.279918 ACGAACCACGACAGCACC 60.280 61.111 0.00 0.00 45.77 5.01
35 36 3.403057 CGAACCACGACAGCACCG 61.403 66.667 0.00 0.00 45.77 4.94
36 37 3.041940 GAACCACGACAGCACCGG 61.042 66.667 0.00 0.00 0.00 5.28
37 38 3.802418 GAACCACGACAGCACCGGT 62.802 63.158 0.00 0.00 0.00 5.28
38 39 3.802418 AACCACGACAGCACCGGTC 62.802 63.158 2.59 0.00 0.00 4.79
56 57 4.209866 GCCCATGGCCCCTACTGG 62.210 72.222 6.09 0.00 44.06 4.00
63 64 4.182433 GCCCCTACTGGCCTCAGC 62.182 72.222 3.32 0.00 46.11 4.26
119 120 2.806237 GGATCTGACCGGGTCGTC 59.194 66.667 21.52 17.73 34.95 4.20
120 121 2.408022 GATCTGACCGGGTCGTCG 59.592 66.667 21.52 12.65 34.95 5.12
121 122 2.360852 ATCTGACCGGGTCGTCGT 60.361 61.111 21.52 5.61 34.95 4.34
122 123 1.078214 ATCTGACCGGGTCGTCGTA 60.078 57.895 21.52 3.40 34.95 3.43
123 124 1.372087 ATCTGACCGGGTCGTCGTAC 61.372 60.000 21.52 0.00 34.95 3.67
124 125 2.281414 TGACCGGGTCGTCGTACA 60.281 61.111 21.52 0.36 34.95 2.90
125 126 2.176792 GACCGGGTCGTCGTACAC 59.823 66.667 12.12 0.00 0.00 2.90
133 134 3.832981 CGTCGTACACGGAACCAC 58.167 61.111 1.39 0.00 45.46 4.16
134 135 1.730547 CGTCGTACACGGAACCACC 60.731 63.158 1.39 0.00 45.46 4.61
135 136 1.373371 GTCGTACACGGAACCACCC 60.373 63.158 1.39 0.00 40.29 4.61
142 143 2.264794 CGGAACCACCCGGAGAAG 59.735 66.667 0.73 0.00 45.43 2.85
143 144 2.280552 CGGAACCACCCGGAGAAGA 61.281 63.158 0.73 0.00 45.43 2.87
144 145 1.823169 CGGAACCACCCGGAGAAGAA 61.823 60.000 0.73 0.00 45.43 2.52
145 146 0.036294 GGAACCACCCGGAGAAGAAG 60.036 60.000 0.73 0.00 35.59 2.85
146 147 0.673956 GAACCACCCGGAGAAGAAGC 60.674 60.000 0.73 0.00 35.59 3.86
147 148 1.128188 AACCACCCGGAGAAGAAGCT 61.128 55.000 0.73 0.00 35.59 3.74
148 149 1.219393 CCACCCGGAGAAGAAGCTC 59.781 63.158 0.73 0.00 0.00 4.09
156 157 2.323968 GAGAAGAAGCTCCCATCACC 57.676 55.000 0.00 0.00 0.00 4.02
157 158 1.556911 GAGAAGAAGCTCCCATCACCA 59.443 52.381 0.00 0.00 0.00 4.17
158 159 1.280421 AGAAGAAGCTCCCATCACCAC 59.720 52.381 0.00 0.00 0.00 4.16
159 160 0.329596 AAGAAGCTCCCATCACCACC 59.670 55.000 0.00 0.00 0.00 4.61
160 161 0.548682 AGAAGCTCCCATCACCACCT 60.549 55.000 0.00 0.00 0.00 4.00
161 162 0.329596 GAAGCTCCCATCACCACCTT 59.670 55.000 0.00 0.00 0.00 3.50
162 163 0.038744 AAGCTCCCATCACCACCTTG 59.961 55.000 0.00 0.00 0.00 3.61
163 164 1.379044 GCTCCCATCACCACCTTGG 60.379 63.158 0.00 0.00 45.02 3.61
164 165 1.852157 GCTCCCATCACCACCTTGGA 61.852 60.000 0.00 0.00 40.96 3.53
165 166 0.035056 CTCCCATCACCACCTTGGAC 60.035 60.000 0.00 0.00 40.96 4.02
166 167 1.000896 CCCATCACCACCTTGGACC 60.001 63.158 0.00 0.00 40.96 4.46
167 168 1.377202 CCATCACCACCTTGGACCG 60.377 63.158 0.00 0.00 40.96 4.79
168 169 2.040544 CATCACCACCTTGGACCGC 61.041 63.158 0.00 0.00 40.96 5.68
169 170 2.224159 ATCACCACCTTGGACCGCT 61.224 57.895 0.00 0.00 40.96 5.52
170 171 1.779061 ATCACCACCTTGGACCGCTT 61.779 55.000 0.00 0.00 40.96 4.68
171 172 1.966451 CACCACCTTGGACCGCTTC 60.966 63.158 0.00 0.00 40.96 3.86
172 173 2.429930 CCACCTTGGACCGCTTCA 59.570 61.111 0.00 0.00 40.96 3.02
173 174 1.966451 CCACCTTGGACCGCTTCAC 60.966 63.158 0.00 0.00 40.96 3.18
174 175 1.966451 CACCTTGGACCGCTTCACC 60.966 63.158 0.00 0.00 0.00 4.02
175 176 2.429930 CCTTGGACCGCTTCACCA 59.570 61.111 0.00 0.00 0.00 4.17
176 177 1.672356 CCTTGGACCGCTTCACCAG 60.672 63.158 0.00 0.00 35.08 4.00
177 178 2.281484 TTGGACCGCTTCACCAGC 60.281 61.111 0.00 0.00 46.31 4.85
208 209 3.052082 CCACCAAGCCGCACAGAG 61.052 66.667 0.00 0.00 0.00 3.35
209 210 2.031012 CACCAAGCCGCACAGAGA 59.969 61.111 0.00 0.00 0.00 3.10
210 211 2.031516 CACCAAGCCGCACAGAGAG 61.032 63.158 0.00 0.00 0.00 3.20
211 212 2.435586 CCAAGCCGCACAGAGAGG 60.436 66.667 0.00 0.00 40.66 3.69
282 283 3.631127 GCTAAGCCGCGCAGTAGC 61.631 66.667 8.75 14.58 37.31 3.58
283 284 2.962253 CTAAGCCGCGCAGTAGCC 60.962 66.667 8.75 0.00 37.52 3.93
284 285 4.524318 TAAGCCGCGCAGTAGCCC 62.524 66.667 8.75 0.00 37.52 5.19
293 294 3.465403 CAGTAGCCCAGCGCCTCT 61.465 66.667 2.29 0.00 38.78 3.69
294 295 3.465403 AGTAGCCCAGCGCCTCTG 61.465 66.667 2.29 0.00 42.49 3.35
332 333 3.866582 GGCTGGGGGATCCGTGAG 61.867 72.222 5.45 1.87 38.76 3.51
344 345 4.130255 CGTGAGGAGGGGAAAGGA 57.870 61.111 0.00 0.00 0.00 3.36
345 346 1.901085 CGTGAGGAGGGGAAAGGAG 59.099 63.158 0.00 0.00 0.00 3.69
346 347 1.604915 GTGAGGAGGGGAAAGGAGC 59.395 63.158 0.00 0.00 0.00 4.70
347 348 1.990060 TGAGGAGGGGAAAGGAGCG 60.990 63.158 0.00 0.00 0.00 5.03
348 349 2.689034 AGGAGGGGAAAGGAGCGG 60.689 66.667 0.00 0.00 0.00 5.52
349 350 4.491409 GGAGGGGAAAGGAGCGGC 62.491 72.222 0.00 0.00 0.00 6.53
350 351 4.491409 GAGGGGAAAGGAGCGGCC 62.491 72.222 0.00 0.00 0.00 6.13
407 408 3.905678 CCTCTAGGTGGCGGCGAG 61.906 72.222 12.98 4.07 0.00 5.03
408 409 3.905678 CTCTAGGTGGCGGCGAGG 61.906 72.222 12.98 0.00 0.00 4.63
422 423 4.144727 GAGGGAGAGGGAGCCGGA 62.145 72.222 5.05 0.00 0.00 5.14
423 424 4.150454 AGGGAGAGGGAGCCGGAG 62.150 72.222 5.05 0.00 0.00 4.63
437 438 4.026357 GGAGGAGAGGGGGTGGGT 62.026 72.222 0.00 0.00 0.00 4.51
438 439 2.689034 GAGGAGAGGGGGTGGGTG 60.689 72.222 0.00 0.00 0.00 4.61
439 440 4.354943 AGGAGAGGGGGTGGGTGG 62.355 72.222 0.00 0.00 0.00 4.61
489 490 3.231736 GAGCGGCTCGGGGGATAA 61.232 66.667 15.09 0.00 0.00 1.75
490 491 3.227792 GAGCGGCTCGGGGGATAAG 62.228 68.421 15.09 0.00 0.00 1.73
491 492 4.315941 GCGGCTCGGGGGATAAGG 62.316 72.222 0.00 0.00 0.00 2.69
492 493 2.842936 CGGCTCGGGGGATAAGGT 60.843 66.667 0.00 0.00 0.00 3.50
493 494 2.440817 CGGCTCGGGGGATAAGGTT 61.441 63.158 0.00 0.00 0.00 3.50
494 495 1.450642 GGCTCGGGGGATAAGGTTC 59.549 63.158 0.00 0.00 0.00 3.62
495 496 1.342672 GGCTCGGGGGATAAGGTTCA 61.343 60.000 0.00 0.00 0.00 3.18
496 497 0.765510 GCTCGGGGGATAAGGTTCAT 59.234 55.000 0.00 0.00 0.00 2.57
497 498 1.543429 GCTCGGGGGATAAGGTTCATG 60.543 57.143 0.00 0.00 0.00 3.07
498 499 1.072331 CTCGGGGGATAAGGTTCATGG 59.928 57.143 0.00 0.00 0.00 3.66
499 500 0.843984 CGGGGGATAAGGTTCATGGT 59.156 55.000 0.00 0.00 0.00 3.55
500 501 1.202770 CGGGGGATAAGGTTCATGGTC 60.203 57.143 0.00 0.00 0.00 4.02
501 502 1.850345 GGGGGATAAGGTTCATGGTCA 59.150 52.381 0.00 0.00 0.00 4.02
502 503 2.422945 GGGGGATAAGGTTCATGGTCAC 60.423 54.545 0.00 0.00 0.00 3.67
503 504 2.422945 GGGGATAAGGTTCATGGTCACC 60.423 54.545 0.00 0.00 0.00 4.02
504 505 2.561569 GGATAAGGTTCATGGTCACCG 58.438 52.381 0.00 0.00 38.21 4.94
505 506 1.940613 GATAAGGTTCATGGTCACCGC 59.059 52.381 0.00 0.00 38.21 5.68
506 507 0.687920 TAAGGTTCATGGTCACCGCA 59.312 50.000 0.00 0.00 38.21 5.69
507 508 0.889186 AAGGTTCATGGTCACCGCAC 60.889 55.000 0.00 0.00 38.21 5.34
508 509 1.302511 GGTTCATGGTCACCGCACT 60.303 57.895 0.00 0.00 0.00 4.40
509 510 0.889186 GGTTCATGGTCACCGCACTT 60.889 55.000 0.00 0.00 0.00 3.16
510 511 0.517316 GTTCATGGTCACCGCACTTC 59.483 55.000 0.00 0.00 0.00 3.01
511 512 0.948623 TTCATGGTCACCGCACTTCG 60.949 55.000 0.00 0.00 38.08 3.79
523 524 3.806316 CGCACTTCGGTGTTCTTTATT 57.194 42.857 0.00 0.00 46.81 1.40
524 525 4.914312 CGCACTTCGGTGTTCTTTATTA 57.086 40.909 0.00 0.00 46.81 0.98
525 526 5.464965 CGCACTTCGGTGTTCTTTATTAT 57.535 39.130 0.00 0.00 46.81 1.28
526 527 5.864986 CGCACTTCGGTGTTCTTTATTATT 58.135 37.500 0.00 0.00 46.81 1.40
527 528 6.311723 CGCACTTCGGTGTTCTTTATTATTT 58.688 36.000 0.00 0.00 46.81 1.40
528 529 6.464834 CGCACTTCGGTGTTCTTTATTATTTC 59.535 38.462 0.00 0.00 46.81 2.17
529 530 7.527457 GCACTTCGGTGTTCTTTATTATTTCT 58.473 34.615 0.00 0.00 46.81 2.52
530 531 7.481798 GCACTTCGGTGTTCTTTATTATTTCTG 59.518 37.037 0.00 0.00 46.81 3.02
531 532 7.962918 CACTTCGGTGTTCTTTATTATTTCTGG 59.037 37.037 0.00 0.00 40.78 3.86
532 533 7.664318 ACTTCGGTGTTCTTTATTATTTCTGGT 59.336 33.333 0.00 0.00 0.00 4.00
533 534 7.372451 TCGGTGTTCTTTATTATTTCTGGTG 57.628 36.000 0.00 0.00 0.00 4.17
534 535 6.027749 CGGTGTTCTTTATTATTTCTGGTGC 58.972 40.000 0.00 0.00 0.00 5.01
535 536 6.128007 CGGTGTTCTTTATTATTTCTGGTGCT 60.128 38.462 0.00 0.00 0.00 4.40
536 537 7.251281 GGTGTTCTTTATTATTTCTGGTGCTC 58.749 38.462 0.00 0.00 0.00 4.26
537 538 6.961554 GTGTTCTTTATTATTTCTGGTGCTCG 59.038 38.462 0.00 0.00 0.00 5.03
538 539 6.653320 TGTTCTTTATTATTTCTGGTGCTCGT 59.347 34.615 0.00 0.00 0.00 4.18
539 540 7.174253 TGTTCTTTATTATTTCTGGTGCTCGTT 59.826 33.333 0.00 0.00 0.00 3.85
540 541 7.072177 TCTTTATTATTTCTGGTGCTCGTTG 57.928 36.000 0.00 0.00 0.00 4.10
541 542 6.653320 TCTTTATTATTTCTGGTGCTCGTTGT 59.347 34.615 0.00 0.00 0.00 3.32
542 543 7.820386 TCTTTATTATTTCTGGTGCTCGTTGTA 59.180 33.333 0.00 0.00 0.00 2.41
543 544 5.796350 ATTATTTCTGGTGCTCGTTGTAC 57.204 39.130 0.00 0.00 0.00 2.90
544 545 2.902705 TTTCTGGTGCTCGTTGTACT 57.097 45.000 0.00 0.00 0.00 2.73
545 546 4.530710 ATTTCTGGTGCTCGTTGTACTA 57.469 40.909 0.00 0.00 0.00 1.82
546 547 3.293311 TTCTGGTGCTCGTTGTACTAC 57.707 47.619 0.00 0.00 0.00 2.73
547 548 2.511659 TCTGGTGCTCGTTGTACTACT 58.488 47.619 5.91 0.00 0.00 2.57
548 549 3.678289 TCTGGTGCTCGTTGTACTACTA 58.322 45.455 5.91 0.00 0.00 1.82
549 550 4.267536 TCTGGTGCTCGTTGTACTACTAT 58.732 43.478 5.91 0.00 0.00 2.12
550 551 5.430886 TCTGGTGCTCGTTGTACTACTATA 58.569 41.667 5.91 0.00 0.00 1.31
551 552 5.882000 TCTGGTGCTCGTTGTACTACTATAA 59.118 40.000 5.91 0.00 0.00 0.98
552 553 6.544931 TCTGGTGCTCGTTGTACTACTATAAT 59.455 38.462 5.91 0.00 0.00 1.28
553 554 7.067859 TCTGGTGCTCGTTGTACTACTATAATT 59.932 37.037 5.91 0.00 0.00 1.40
554 555 6.976349 TGGTGCTCGTTGTACTACTATAATTG 59.024 38.462 5.91 0.00 0.00 2.32
555 556 7.148035 TGGTGCTCGTTGTACTACTATAATTGA 60.148 37.037 5.91 0.00 0.00 2.57
556 557 7.703621 GGTGCTCGTTGTACTACTATAATTGAA 59.296 37.037 5.91 0.00 0.00 2.69
557 558 8.744011 GTGCTCGTTGTACTACTATAATTGAAG 58.256 37.037 5.91 0.00 0.00 3.02
558 559 8.680001 TGCTCGTTGTACTACTATAATTGAAGA 58.320 33.333 5.91 0.00 0.00 2.87
559 560 9.680315 GCTCGTTGTACTACTATAATTGAAGAT 57.320 33.333 5.91 0.00 0.00 2.40
574 575 9.887862 ATAATTGAAGATGAATAGATTGGGGTT 57.112 29.630 0.00 0.00 0.00 4.11
575 576 8.613922 AATTGAAGATGAATAGATTGGGGTTT 57.386 30.769 0.00 0.00 0.00 3.27
576 577 8.613922 ATTGAAGATGAATAGATTGGGGTTTT 57.386 30.769 0.00 0.00 0.00 2.43
577 578 8.434589 TTGAAGATGAATAGATTGGGGTTTTT 57.565 30.769 0.00 0.00 0.00 1.94
628 629 4.378046 CGGTATTCTCAAGTTTTGGAACCG 60.378 45.833 0.00 0.00 36.39 4.44
633 634 5.682943 TCTCAAGTTTTGGAACCGTATTG 57.317 39.130 0.00 0.00 36.39 1.90
683 684 3.900601 TGGACATTGCCACCAAGTTTAAT 59.099 39.130 0.00 0.00 33.80 1.40
764 765 3.095332 CTGACCAGAAGAGTCATGGAGA 58.905 50.000 14.07 1.99 43.04 3.71
765 766 3.510459 TGACCAGAAGAGTCATGGAGAA 58.490 45.455 14.07 0.00 39.29 2.87
769 770 5.885465 ACCAGAAGAGTCATGGAGAAAAAT 58.115 37.500 14.07 0.00 37.54 1.82
1118 2898 1.003580 GTCCTTCTGGCTGGTCATGAA 59.996 52.381 0.00 0.00 0.00 2.57
1302 3097 1.177895 TGCACGTTGACAATGGCCAT 61.178 50.000 14.09 14.09 0.00 4.40
1428 3223 4.360964 CGGTGGCCGGTGAACGTA 62.361 66.667 1.90 0.00 44.15 3.57
1596 3391 1.142748 AGCGTGCAGGCTAGCTTAG 59.857 57.895 31.10 5.97 42.62 2.18
1611 3406 2.737252 AGCTTAGCACACGTTTTAGAGC 59.263 45.455 7.07 0.00 0.00 4.09
1649 3444 6.677781 TTTGCTTCTTACATATTTCCTCCG 57.322 37.500 0.00 0.00 0.00 4.63
1652 3447 5.815740 TGCTTCTTACATATTTCCTCCGTTC 59.184 40.000 0.00 0.00 0.00 3.95
1661 3456 8.356000 ACATATTTCCTCCGTTCCAAAATAAA 57.644 30.769 0.00 0.00 0.00 1.40
1670 3465 6.908825 TCCGTTCCAAAATAAATGACTCAAG 58.091 36.000 0.00 0.00 0.00 3.02
1674 3469 8.479280 CGTTCCAAAATAAATGACTCAAGTTTG 58.521 33.333 0.00 0.00 0.00 2.93
1678 3473 9.743057 CCAAAATAAATGACTCAAGTTTGTACA 57.257 29.630 0.00 0.00 0.00 2.90
1683 3525 6.867662 AATGACTCAAGTTTGTACAAGGAG 57.132 37.500 18.85 18.85 0.00 3.69
1731 3573 9.597170 AAGGTCTTCGTTCCTAAATATAAGTTC 57.403 33.333 0.00 0.00 33.27 3.01
1754 3596 9.462606 GTTCTTTTAGAGATTTTGGAGGGAATA 57.537 33.333 0.00 0.00 33.49 1.75
1808 3650 4.989279 ACTCCACCAAATGCATTGTATC 57.011 40.909 13.82 0.00 37.32 2.24
1809 3651 4.603131 ACTCCACCAAATGCATTGTATCT 58.397 39.130 13.82 0.00 37.32 1.98
1810 3652 5.018809 ACTCCACCAAATGCATTGTATCTT 58.981 37.500 13.82 0.00 37.32 2.40
1811 3653 6.186957 ACTCCACCAAATGCATTGTATCTTA 58.813 36.000 13.82 0.00 37.32 2.10
1812 3654 6.319658 ACTCCACCAAATGCATTGTATCTTAG 59.680 38.462 13.82 8.26 37.32 2.18
1813 3655 5.593909 TCCACCAAATGCATTGTATCTTAGG 59.406 40.000 13.82 7.55 37.32 2.69
1814 3656 5.221303 CCACCAAATGCATTGTATCTTAGGG 60.221 44.000 13.82 6.31 37.32 3.53
1815 3657 4.895297 ACCAAATGCATTGTATCTTAGGGG 59.105 41.667 13.82 4.87 37.32 4.79
1816 3658 4.262164 CCAAATGCATTGTATCTTAGGGGC 60.262 45.833 13.82 0.00 37.32 5.80
1817 3659 4.459852 AATGCATTGTATCTTAGGGGCT 57.540 40.909 12.09 0.00 0.00 5.19
1818 3660 3.213206 TGCATTGTATCTTAGGGGCTG 57.787 47.619 0.00 0.00 0.00 4.85
1819 3661 2.509548 TGCATTGTATCTTAGGGGCTGT 59.490 45.455 0.00 0.00 0.00 4.40
1820 3662 3.053693 TGCATTGTATCTTAGGGGCTGTT 60.054 43.478 0.00 0.00 0.00 3.16
1821 3663 3.565902 GCATTGTATCTTAGGGGCTGTTC 59.434 47.826 0.00 0.00 0.00 3.18
1822 3664 3.536956 TTGTATCTTAGGGGCTGTTCG 57.463 47.619 0.00 0.00 0.00 3.95
1823 3665 1.760613 TGTATCTTAGGGGCTGTTCGG 59.239 52.381 0.00 0.00 0.00 4.30
1824 3666 0.756903 TATCTTAGGGGCTGTTCGGC 59.243 55.000 0.00 0.00 37.49 5.54
1825 3667 1.271840 ATCTTAGGGGCTGTTCGGCA 61.272 55.000 5.97 0.00 40.61 5.69
1826 3668 1.002624 CTTAGGGGCTGTTCGGCAA 60.003 57.895 5.97 0.00 40.61 4.52
1827 3669 1.302993 TTAGGGGCTGTTCGGCAAC 60.303 57.895 5.97 0.00 40.61 4.17
1841 3683 2.664851 CAACGCTCCGCTCCACAA 60.665 61.111 0.00 0.00 0.00 3.33
1842 3684 2.665185 AACGCTCCGCTCCACAAC 60.665 61.111 0.00 0.00 0.00 3.32
1843 3685 3.165160 AACGCTCCGCTCCACAACT 62.165 57.895 0.00 0.00 0.00 3.16
1844 3686 2.357517 CGCTCCGCTCCACAACTT 60.358 61.111 0.00 0.00 0.00 2.66
1845 3687 2.383527 CGCTCCGCTCCACAACTTC 61.384 63.158 0.00 0.00 0.00 3.01
1846 3688 2.035442 GCTCCGCTCCACAACTTCC 61.035 63.158 0.00 0.00 0.00 3.46
1847 3689 1.738099 CTCCGCTCCACAACTTCCG 60.738 63.158 0.00 0.00 0.00 4.30
1848 3690 2.154798 CTCCGCTCCACAACTTCCGA 62.155 60.000 0.00 0.00 0.00 4.55
1849 3691 1.301401 CCGCTCCACAACTTCCGAA 60.301 57.895 0.00 0.00 0.00 4.30
1850 3692 1.291877 CCGCTCCACAACTTCCGAAG 61.292 60.000 6.59 6.59 0.00 3.79
1851 3693 1.869690 GCTCCACAACTTCCGAAGC 59.130 57.895 8.11 0.00 0.00 3.86
1852 3694 1.901650 GCTCCACAACTTCCGAAGCG 61.902 60.000 8.11 2.59 0.00 4.68
1863 3705 4.735132 CGAAGCGGAGTTGGCGGA 62.735 66.667 0.00 0.00 35.00 5.54
1864 3706 2.815647 GAAGCGGAGTTGGCGGAG 60.816 66.667 0.00 0.00 35.00 4.63
1882 3724 4.969816 CGGAGCTGTAGTTTAAAATGGTG 58.030 43.478 0.00 0.00 0.00 4.17
1883 3725 4.142687 CGGAGCTGTAGTTTAAAATGGTGG 60.143 45.833 0.00 0.00 0.00 4.61
1884 3726 5.007682 GGAGCTGTAGTTTAAAATGGTGGA 58.992 41.667 0.00 0.00 0.00 4.02
1885 3727 5.123979 GGAGCTGTAGTTTAAAATGGTGGAG 59.876 44.000 0.00 0.00 0.00 3.86
1886 3728 5.631119 AGCTGTAGTTTAAAATGGTGGAGT 58.369 37.500 0.00 0.00 0.00 3.85
1887 3729 6.068670 AGCTGTAGTTTAAAATGGTGGAGTT 58.931 36.000 0.00 0.00 0.00 3.01
1888 3730 6.016276 AGCTGTAGTTTAAAATGGTGGAGTTG 60.016 38.462 0.00 0.00 0.00 3.16
1889 3731 6.079424 TGTAGTTTAAAATGGTGGAGTTGC 57.921 37.500 0.00 0.00 0.00 4.17
1890 3732 4.600692 AGTTTAAAATGGTGGAGTTGCC 57.399 40.909 0.00 0.00 37.10 4.52
1891 3733 3.964031 AGTTTAAAATGGTGGAGTTGCCA 59.036 39.130 0.00 0.00 46.96 4.92
1900 3742 1.544724 TGGAGTTGCCATTTAGCCAC 58.455 50.000 0.00 0.00 43.33 5.01
1901 3743 1.075374 TGGAGTTGCCATTTAGCCACT 59.925 47.619 0.00 0.00 43.33 4.00
1903 3745 2.716217 GAGTTGCCATTTAGCCACTCT 58.284 47.619 9.72 0.00 46.65 3.24
1904 3746 2.421424 GAGTTGCCATTTAGCCACTCTG 59.579 50.000 9.72 0.00 46.65 3.35
1905 3747 1.135286 GTTGCCATTTAGCCACTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
1906 3748 0.038021 TGCCATTTAGCCACTCTGCA 59.962 50.000 0.00 0.00 0.00 4.41
1907 3749 0.737219 GCCATTTAGCCACTCTGCAG 59.263 55.000 7.63 7.63 0.00 4.41
1908 3750 1.679944 GCCATTTAGCCACTCTGCAGA 60.680 52.381 17.19 17.19 0.00 4.26
1909 3751 2.928334 CCATTTAGCCACTCTGCAGAT 58.072 47.619 18.63 4.20 0.00 2.90
1910 3752 3.285484 CCATTTAGCCACTCTGCAGATT 58.715 45.455 18.63 9.19 0.00 2.40
1911 3753 3.314635 CCATTTAGCCACTCTGCAGATTC 59.685 47.826 18.63 6.70 0.00 2.52
1912 3754 3.988976 TTTAGCCACTCTGCAGATTCT 57.011 42.857 18.63 13.54 0.00 2.40
1913 3755 5.363101 CATTTAGCCACTCTGCAGATTCTA 58.637 41.667 18.63 12.58 0.00 2.10
1914 3756 4.662468 TTAGCCACTCTGCAGATTCTAG 57.338 45.455 18.63 7.67 0.00 2.43
1915 3757 1.761784 AGCCACTCTGCAGATTCTAGG 59.238 52.381 18.63 15.00 0.00 3.02
1916 3758 1.759445 GCCACTCTGCAGATTCTAGGA 59.241 52.381 18.63 0.00 0.00 2.94
1917 3759 2.224018 GCCACTCTGCAGATTCTAGGAG 60.224 54.545 18.63 5.27 0.00 3.69
1918 3760 2.224018 CCACTCTGCAGATTCTAGGAGC 60.224 54.545 18.63 0.00 0.00 4.70
1919 3761 2.429971 CACTCTGCAGATTCTAGGAGCA 59.570 50.000 18.63 3.84 0.00 4.26
1923 3765 2.744760 TGCAGATTCTAGGAGCAGACT 58.255 47.619 0.00 0.00 0.00 3.24
1924 3766 3.903467 TGCAGATTCTAGGAGCAGACTA 58.097 45.455 0.00 0.00 0.00 2.59
1925 3767 4.478203 TGCAGATTCTAGGAGCAGACTAT 58.522 43.478 0.00 0.00 0.00 2.12
1926 3768 4.898265 TGCAGATTCTAGGAGCAGACTATT 59.102 41.667 0.00 0.00 0.00 1.73
1927 3769 6.071320 TGCAGATTCTAGGAGCAGACTATTA 58.929 40.000 0.00 0.00 0.00 0.98
1928 3770 6.015856 TGCAGATTCTAGGAGCAGACTATTAC 60.016 42.308 0.00 0.00 0.00 1.89
1929 3771 6.571537 GCAGATTCTAGGAGCAGACTATTACC 60.572 46.154 0.00 0.00 0.00 2.85
1930 3772 5.708230 AGATTCTAGGAGCAGACTATTACCG 59.292 44.000 0.00 0.00 0.00 4.02
1931 3773 4.701651 TCTAGGAGCAGACTATTACCGA 57.298 45.455 0.00 0.00 0.00 4.69
1932 3774 5.045012 TCTAGGAGCAGACTATTACCGAA 57.955 43.478 0.00 0.00 0.00 4.30
1933 3775 4.820716 TCTAGGAGCAGACTATTACCGAAC 59.179 45.833 0.00 0.00 0.00 3.95
1934 3776 3.362706 AGGAGCAGACTATTACCGAACA 58.637 45.455 0.00 0.00 0.00 3.18
1935 3777 3.381908 AGGAGCAGACTATTACCGAACAG 59.618 47.826 0.00 0.00 0.00 3.16
1937 3779 2.431057 AGCAGACTATTACCGAACAGGG 59.569 50.000 0.00 0.00 46.96 4.45
1938 3780 2.822764 CAGACTATTACCGAACAGGGC 58.177 52.381 0.00 0.00 46.96 5.19
2106 3948 5.607477 ACAAGAGATTGACTTACGGAAACA 58.393 37.500 0.00 0.00 0.00 2.83
2115 3957 7.747155 TTGACTTACGGAAACAAATCCATAA 57.253 32.000 0.00 0.00 39.61 1.90
2235 4083 5.163854 GCAATCATGTTCGTAGCAGTTTACT 60.164 40.000 0.00 0.00 0.00 2.24
2238 4087 6.462073 TCATGTTCGTAGCAGTTTACTTTC 57.538 37.500 0.00 0.00 0.00 2.62
2352 4201 4.925054 CGCATGTTTGGTTCAATCAAATCT 59.075 37.500 0.00 0.00 36.64 2.40
2380 4229 8.088365 GCAAACTGATTTAGGAACTTGGTTAAT 58.912 33.333 0.00 0.00 41.75 1.40
2420 4271 6.036191 CAGTAAACTTAAGCAAGCTACTAGCC 59.964 42.308 1.29 0.00 43.77 3.93
2501 4354 1.146263 CCCATGTACGCTTCTCCCC 59.854 63.158 0.00 0.00 0.00 4.81
2521 4374 2.403259 CGCGAGGCATGTGATGTATTA 58.597 47.619 0.00 0.00 0.00 0.98
2523 4376 3.653344 GCGAGGCATGTGATGTATTAGA 58.347 45.455 0.00 0.00 0.00 2.10
2530 4383 5.509163 GGCATGTGATGTATTAGACGTAGGT 60.509 44.000 0.00 0.00 0.00 3.08
2560 4413 0.827089 CACCATGGTTGTTGGAGGCA 60.827 55.000 16.84 0.00 37.69 4.75
2565 4418 1.039068 TGGTTGTTGGAGGCAATGTG 58.961 50.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.947147 TCTGGCGGTGTTGGTGGC 62.947 66.667 0.00 0.00 0.00 5.01
1 2 2.978010 GTCTGGCGGTGTTGGTGG 60.978 66.667 0.00 0.00 0.00 4.61
2 3 3.345808 CGTCTGGCGGTGTTGGTG 61.346 66.667 0.00 0.00 36.85 4.17
3 4 3.096633 TTCGTCTGGCGGTGTTGGT 62.097 57.895 0.30 0.00 41.72 3.67
4 5 2.280524 TTCGTCTGGCGGTGTTGG 60.281 61.111 0.30 0.00 41.72 3.77
5 6 2.604174 GGTTCGTCTGGCGGTGTTG 61.604 63.158 0.30 0.00 41.72 3.33
6 7 2.280592 GGTTCGTCTGGCGGTGTT 60.281 61.111 0.30 0.00 41.72 3.32
7 8 3.542676 TGGTTCGTCTGGCGGTGT 61.543 61.111 0.30 0.00 41.72 4.16
8 9 3.041940 GTGGTTCGTCTGGCGGTG 61.042 66.667 0.30 0.00 41.72 4.94
9 10 4.657824 CGTGGTTCGTCTGGCGGT 62.658 66.667 0.30 0.00 41.72 5.68
10 11 4.351938 TCGTGGTTCGTCTGGCGG 62.352 66.667 0.30 0.00 41.72 6.13
11 12 3.103911 GTCGTGGTTCGTCTGGCG 61.104 66.667 0.00 0.00 40.80 5.69
12 13 2.022129 CTGTCGTGGTTCGTCTGGC 61.022 63.158 0.00 0.00 40.80 4.85
13 14 2.022129 GCTGTCGTGGTTCGTCTGG 61.022 63.158 0.00 0.00 40.80 3.86
14 15 1.299850 TGCTGTCGTGGTTCGTCTG 60.300 57.895 0.00 0.00 40.80 3.51
15 16 1.299926 GTGCTGTCGTGGTTCGTCT 60.300 57.895 0.00 0.00 40.80 4.18
16 17 2.308039 GGTGCTGTCGTGGTTCGTC 61.308 63.158 0.00 0.00 40.80 4.20
17 18 2.279918 GGTGCTGTCGTGGTTCGT 60.280 61.111 0.00 0.00 40.80 3.85
18 19 3.403057 CGGTGCTGTCGTGGTTCG 61.403 66.667 0.00 0.00 41.41 3.95
19 20 3.041940 CCGGTGCTGTCGTGGTTC 61.042 66.667 0.00 0.00 0.00 3.62
20 21 3.802418 GACCGGTGCTGTCGTGGTT 62.802 63.158 14.63 0.00 31.86 3.67
21 22 4.295119 GACCGGTGCTGTCGTGGT 62.295 66.667 14.63 0.00 35.14 4.16
102 103 2.806237 GACGACCCGGTCAGATCC 59.194 66.667 17.87 0.00 36.91 3.36
103 104 1.091771 TACGACGACCCGGTCAGATC 61.092 60.000 17.87 10.26 36.73 2.75
104 105 1.078214 TACGACGACCCGGTCAGAT 60.078 57.895 17.87 2.05 36.73 2.90
105 106 2.034879 GTACGACGACCCGGTCAGA 61.035 63.158 17.87 0.00 36.73 3.27
106 107 2.327343 TGTACGACGACCCGGTCAG 61.327 63.158 17.87 12.17 36.73 3.51
107 108 2.281414 TGTACGACGACCCGGTCA 60.281 61.111 17.87 0.00 36.73 4.02
108 109 2.176792 GTGTACGACGACCCGGTC 59.823 66.667 7.59 7.59 0.00 4.79
117 118 1.373371 GGGTGGTTCCGTGTACGAC 60.373 63.158 5.91 0.00 43.02 4.34
118 119 2.918345 CGGGTGGTTCCGTGTACGA 61.918 63.158 5.91 0.00 44.60 3.43
119 120 2.431260 CGGGTGGTTCCGTGTACG 60.431 66.667 0.00 0.00 44.60 3.67
126 127 0.036294 CTTCTTCTCCGGGTGGTTCC 60.036 60.000 0.00 0.00 36.30 3.62
127 128 0.673956 GCTTCTTCTCCGGGTGGTTC 60.674 60.000 0.00 0.00 36.30 3.62
128 129 1.128188 AGCTTCTTCTCCGGGTGGTT 61.128 55.000 0.00 0.00 36.30 3.67
129 130 1.536662 AGCTTCTTCTCCGGGTGGT 60.537 57.895 0.00 0.00 36.30 4.16
130 131 1.219393 GAGCTTCTTCTCCGGGTGG 59.781 63.158 0.00 0.00 0.00 4.61
131 132 1.219393 GGAGCTTCTTCTCCGGGTG 59.781 63.158 0.00 0.00 42.74 4.61
132 133 3.715015 GGAGCTTCTTCTCCGGGT 58.285 61.111 0.00 0.00 42.74 5.28
137 138 1.556911 TGGTGATGGGAGCTTCTTCTC 59.443 52.381 0.00 0.00 0.00 2.87
138 139 1.280421 GTGGTGATGGGAGCTTCTTCT 59.720 52.381 0.00 0.00 0.00 2.85
139 140 1.680249 GGTGGTGATGGGAGCTTCTTC 60.680 57.143 0.00 0.00 0.00 2.87
140 141 0.329596 GGTGGTGATGGGAGCTTCTT 59.670 55.000 0.00 0.00 0.00 2.52
141 142 0.548682 AGGTGGTGATGGGAGCTTCT 60.549 55.000 0.00 0.00 0.00 2.85
142 143 0.329596 AAGGTGGTGATGGGAGCTTC 59.670 55.000 0.00 0.00 0.00 3.86
143 144 0.038744 CAAGGTGGTGATGGGAGCTT 59.961 55.000 0.00 0.00 0.00 3.74
144 145 1.687612 CAAGGTGGTGATGGGAGCT 59.312 57.895 0.00 0.00 0.00 4.09
145 146 1.379044 CCAAGGTGGTGATGGGAGC 60.379 63.158 0.00 0.00 31.35 4.70
146 147 0.035056 GTCCAAGGTGGTGATGGGAG 60.035 60.000 0.00 0.00 39.03 4.30
147 148 1.497309 GGTCCAAGGTGGTGATGGGA 61.497 60.000 0.00 0.00 39.03 4.37
148 149 1.000896 GGTCCAAGGTGGTGATGGG 60.001 63.158 0.00 0.00 39.03 4.00
149 150 1.377202 CGGTCCAAGGTGGTGATGG 60.377 63.158 0.00 0.00 39.03 3.51
150 151 2.040544 GCGGTCCAAGGTGGTGATG 61.041 63.158 0.00 0.00 39.03 3.07
151 152 1.779061 AAGCGGTCCAAGGTGGTGAT 61.779 55.000 0.00 0.00 39.03 3.06
152 153 2.391724 GAAGCGGTCCAAGGTGGTGA 62.392 60.000 0.00 0.00 39.03 4.02
153 154 1.966451 GAAGCGGTCCAAGGTGGTG 60.966 63.158 0.00 0.00 39.03 4.17
154 155 2.430367 GAAGCGGTCCAAGGTGGT 59.570 61.111 0.00 0.00 39.03 4.16
155 156 1.966451 GTGAAGCGGTCCAAGGTGG 60.966 63.158 0.00 0.00 39.43 4.61
156 157 1.966451 GGTGAAGCGGTCCAAGGTG 60.966 63.158 0.00 0.00 0.00 4.00
157 158 2.397413 CTGGTGAAGCGGTCCAAGGT 62.397 60.000 0.00 0.00 0.00 3.50
158 159 1.672356 CTGGTGAAGCGGTCCAAGG 60.672 63.158 0.00 0.00 0.00 3.61
159 160 2.328099 GCTGGTGAAGCGGTCCAAG 61.328 63.158 0.00 0.00 43.45 3.61
160 161 2.281484 GCTGGTGAAGCGGTCCAA 60.281 61.111 0.00 0.00 43.45 3.53
191 192 3.052082 CTCTGTGCGGCTTGGTGG 61.052 66.667 0.00 0.00 0.00 4.61
192 193 2.031012 TCTCTGTGCGGCTTGGTG 59.969 61.111 0.00 0.00 0.00 4.17
193 194 2.345244 CTCTCTGTGCGGCTTGGT 59.655 61.111 0.00 0.00 0.00 3.67
194 195 2.435586 CCTCTCTGTGCGGCTTGG 60.436 66.667 0.00 0.00 0.00 3.61
195 196 3.123620 GCCTCTCTGTGCGGCTTG 61.124 66.667 0.00 0.00 40.62 4.01
196 197 4.400961 GGCCTCTCTGTGCGGCTT 62.401 66.667 10.18 0.00 43.29 4.35
265 266 3.631127 GCTACTGCGCGGCTTAGC 61.631 66.667 18.15 18.91 35.18 3.09
266 267 2.962253 GGCTACTGCGCGGCTTAG 60.962 66.667 18.15 12.76 40.82 2.18
267 268 4.524318 GGGCTACTGCGCGGCTTA 62.524 66.667 18.15 0.57 42.10 3.09
315 316 3.866582 CTCACGGATCCCCCAGCC 61.867 72.222 6.06 0.00 34.14 4.85
316 317 3.866582 CCTCACGGATCCCCCAGC 61.867 72.222 6.06 0.00 34.14 4.85
317 318 2.041922 TCCTCACGGATCCCCCAG 60.042 66.667 6.06 0.00 33.30 4.45
318 319 2.041922 CTCCTCACGGATCCCCCA 60.042 66.667 6.06 0.00 39.01 4.96
319 320 2.844839 CCTCCTCACGGATCCCCC 60.845 72.222 6.06 0.00 39.01 5.40
320 321 2.844839 CCCTCCTCACGGATCCCC 60.845 72.222 6.06 0.00 39.01 4.81
321 322 2.844839 CCCCTCCTCACGGATCCC 60.845 72.222 6.06 0.00 39.01 3.85
322 323 0.981277 TTTCCCCTCCTCACGGATCC 60.981 60.000 0.00 0.00 39.01 3.36
323 324 0.466124 CTTTCCCCTCCTCACGGATC 59.534 60.000 0.00 0.00 39.01 3.36
324 325 0.983378 CCTTTCCCCTCCTCACGGAT 60.983 60.000 0.00 0.00 39.01 4.18
325 326 1.612442 CCTTTCCCCTCCTCACGGA 60.612 63.158 0.00 0.00 37.82 4.69
326 327 1.612442 TCCTTTCCCCTCCTCACGG 60.612 63.158 0.00 0.00 0.00 4.94
327 328 1.901085 CTCCTTTCCCCTCCTCACG 59.099 63.158 0.00 0.00 0.00 4.35
328 329 1.604915 GCTCCTTTCCCCTCCTCAC 59.395 63.158 0.00 0.00 0.00 3.51
329 330 1.990060 CGCTCCTTTCCCCTCCTCA 60.990 63.158 0.00 0.00 0.00 3.86
330 331 2.736826 CCGCTCCTTTCCCCTCCTC 61.737 68.421 0.00 0.00 0.00 3.71
331 332 2.689034 CCGCTCCTTTCCCCTCCT 60.689 66.667 0.00 0.00 0.00 3.69
332 333 4.491409 GCCGCTCCTTTCCCCTCC 62.491 72.222 0.00 0.00 0.00 4.30
333 334 4.491409 GGCCGCTCCTTTCCCCTC 62.491 72.222 0.00 0.00 0.00 4.30
390 391 3.905678 CTCGCCGCCACCTAGAGG 61.906 72.222 0.00 0.00 42.17 3.69
391 392 3.905678 CCTCGCCGCCACCTAGAG 61.906 72.222 0.00 0.00 0.00 2.43
405 406 4.144727 TCCGGCTCCCTCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
406 407 4.150454 CTCCGGCTCCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
408 409 4.144727 TCCTCCGGCTCCCTCTCC 62.145 72.222 0.00 0.00 0.00 3.71
409 410 2.520741 CTCCTCCGGCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
410 411 3.024356 TCTCCTCCGGCTCCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
411 412 2.520741 CTCTCCTCCGGCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
412 413 4.150454 CCTCTCCTCCGGCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
420 421 4.026357 ACCCACCCCCTCTCCTCC 62.026 72.222 0.00 0.00 0.00 4.30
421 422 2.689034 CACCCACCCCCTCTCCTC 60.689 72.222 0.00 0.00 0.00 3.71
422 423 4.354943 CCACCCACCCCCTCTCCT 62.355 72.222 0.00 0.00 0.00 3.69
472 473 3.227792 CTTATCCCCCGAGCCGCTC 62.228 68.421 10.59 10.59 0.00 5.03
473 474 3.234730 CTTATCCCCCGAGCCGCT 61.235 66.667 0.00 0.00 0.00 5.52
474 475 4.315941 CCTTATCCCCCGAGCCGC 62.316 72.222 0.00 0.00 0.00 6.53
475 476 2.379030 GAACCTTATCCCCCGAGCCG 62.379 65.000 0.00 0.00 0.00 5.52
476 477 1.342672 TGAACCTTATCCCCCGAGCC 61.343 60.000 0.00 0.00 0.00 4.70
477 478 0.765510 ATGAACCTTATCCCCCGAGC 59.234 55.000 0.00 0.00 0.00 5.03
478 479 1.072331 CCATGAACCTTATCCCCCGAG 59.928 57.143 0.00 0.00 0.00 4.63
479 480 1.136828 CCATGAACCTTATCCCCCGA 58.863 55.000 0.00 0.00 0.00 5.14
480 481 0.843984 ACCATGAACCTTATCCCCCG 59.156 55.000 0.00 0.00 0.00 5.73
481 482 1.850345 TGACCATGAACCTTATCCCCC 59.150 52.381 0.00 0.00 0.00 5.40
482 483 2.422945 GGTGACCATGAACCTTATCCCC 60.423 54.545 0.00 0.00 33.40 4.81
483 484 2.745152 CGGTGACCATGAACCTTATCCC 60.745 54.545 1.11 0.00 34.06 3.85
484 485 2.561569 CGGTGACCATGAACCTTATCC 58.438 52.381 1.11 0.00 34.06 2.59
485 486 1.940613 GCGGTGACCATGAACCTTATC 59.059 52.381 1.11 0.00 34.06 1.75
486 487 1.280710 TGCGGTGACCATGAACCTTAT 59.719 47.619 1.11 0.00 34.06 1.73
487 488 0.687920 TGCGGTGACCATGAACCTTA 59.312 50.000 1.11 0.00 34.06 2.69
488 489 0.889186 GTGCGGTGACCATGAACCTT 60.889 55.000 1.11 0.00 34.06 3.50
489 490 1.302511 GTGCGGTGACCATGAACCT 60.303 57.895 1.11 0.00 34.06 3.50
490 491 0.889186 AAGTGCGGTGACCATGAACC 60.889 55.000 1.11 0.00 0.00 3.62
491 492 0.517316 GAAGTGCGGTGACCATGAAC 59.483 55.000 1.11 0.00 0.00 3.18
492 493 0.948623 CGAAGTGCGGTGACCATGAA 60.949 55.000 1.11 0.00 36.03 2.57
493 494 1.374125 CGAAGTGCGGTGACCATGA 60.374 57.895 1.11 0.00 36.03 3.07
494 495 3.168271 CGAAGTGCGGTGACCATG 58.832 61.111 1.11 0.00 36.03 3.66
506 507 7.664318 ACCAGAAATAATAAAGAACACCGAAGT 59.336 33.333 0.00 0.00 0.00 3.01
507 508 7.962918 CACCAGAAATAATAAAGAACACCGAAG 59.037 37.037 0.00 0.00 0.00 3.79
508 509 7.574217 GCACCAGAAATAATAAAGAACACCGAA 60.574 37.037 0.00 0.00 0.00 4.30
509 510 6.128117 GCACCAGAAATAATAAAGAACACCGA 60.128 38.462 0.00 0.00 0.00 4.69
510 511 6.027749 GCACCAGAAATAATAAAGAACACCG 58.972 40.000 0.00 0.00 0.00 4.94
511 512 7.158099 AGCACCAGAAATAATAAAGAACACC 57.842 36.000 0.00 0.00 0.00 4.16
512 513 6.961554 CGAGCACCAGAAATAATAAAGAACAC 59.038 38.462 0.00 0.00 0.00 3.32
513 514 6.653320 ACGAGCACCAGAAATAATAAAGAACA 59.347 34.615 0.00 0.00 0.00 3.18
514 515 7.073342 ACGAGCACCAGAAATAATAAAGAAC 57.927 36.000 0.00 0.00 0.00 3.01
515 516 7.174253 ACAACGAGCACCAGAAATAATAAAGAA 59.826 33.333 0.00 0.00 0.00 2.52
516 517 6.653320 ACAACGAGCACCAGAAATAATAAAGA 59.347 34.615 0.00 0.00 0.00 2.52
517 518 6.842163 ACAACGAGCACCAGAAATAATAAAG 58.158 36.000 0.00 0.00 0.00 1.85
518 519 6.811253 ACAACGAGCACCAGAAATAATAAA 57.189 33.333 0.00 0.00 0.00 1.40
519 520 7.101054 AGTACAACGAGCACCAGAAATAATAA 58.899 34.615 0.00 0.00 0.00 1.40
520 521 6.636705 AGTACAACGAGCACCAGAAATAATA 58.363 36.000 0.00 0.00 0.00 0.98
521 522 5.488341 AGTACAACGAGCACCAGAAATAAT 58.512 37.500 0.00 0.00 0.00 1.28
522 523 4.890088 AGTACAACGAGCACCAGAAATAA 58.110 39.130 0.00 0.00 0.00 1.40
523 524 4.530710 AGTACAACGAGCACCAGAAATA 57.469 40.909 0.00 0.00 0.00 1.40
524 525 3.402628 AGTACAACGAGCACCAGAAAT 57.597 42.857 0.00 0.00 0.00 2.17
525 526 2.902705 AGTACAACGAGCACCAGAAA 57.097 45.000 0.00 0.00 0.00 2.52
526 527 2.889045 AGTAGTACAACGAGCACCAGAA 59.111 45.455 2.52 0.00 0.00 3.02
527 528 2.511659 AGTAGTACAACGAGCACCAGA 58.488 47.619 2.52 0.00 0.00 3.86
528 529 4.634184 ATAGTAGTACAACGAGCACCAG 57.366 45.455 2.52 0.00 0.00 4.00
529 530 6.704289 ATTATAGTAGTACAACGAGCACCA 57.296 37.500 2.52 0.00 0.00 4.17
530 531 7.198390 TCAATTATAGTAGTACAACGAGCACC 58.802 38.462 2.52 0.00 0.00 5.01
531 532 8.624701 TTCAATTATAGTAGTACAACGAGCAC 57.375 34.615 2.52 0.00 0.00 4.40
532 533 8.680001 TCTTCAATTATAGTAGTACAACGAGCA 58.320 33.333 2.52 0.00 0.00 4.26
533 534 9.680315 ATCTTCAATTATAGTAGTACAACGAGC 57.320 33.333 2.52 0.00 0.00 5.03
548 549 9.887862 AACCCCAATCTATTCATCTTCAATTAT 57.112 29.630 0.00 0.00 0.00 1.28
549 550 9.713684 AAACCCCAATCTATTCATCTTCAATTA 57.286 29.630 0.00 0.00 0.00 1.40
550 551 8.613922 AAACCCCAATCTATTCATCTTCAATT 57.386 30.769 0.00 0.00 0.00 2.32
551 552 8.613922 AAAACCCCAATCTATTCATCTTCAAT 57.386 30.769 0.00 0.00 0.00 2.57
552 553 8.434589 AAAAACCCCAATCTATTCATCTTCAA 57.565 30.769 0.00 0.00 0.00 2.69
574 575 9.872721 AATACGGTCCTTTTCTTTTTACAAAAA 57.127 25.926 0.36 0.36 36.53 1.94
579 580 9.121517 GCTTTAATACGGTCCTTTTCTTTTTAC 57.878 33.333 0.00 0.00 0.00 2.01
580 581 8.016801 CGCTTTAATACGGTCCTTTTCTTTTTA 58.983 33.333 0.00 0.00 0.00 1.52
581 582 6.859508 CGCTTTAATACGGTCCTTTTCTTTTT 59.140 34.615 0.00 0.00 0.00 1.94
582 583 6.376177 CGCTTTAATACGGTCCTTTTCTTTT 58.624 36.000 0.00 0.00 0.00 2.27
583 584 5.106436 CCGCTTTAATACGGTCCTTTTCTTT 60.106 40.000 8.19 0.00 44.46 2.52
584 585 4.393990 CCGCTTTAATACGGTCCTTTTCTT 59.606 41.667 8.19 0.00 44.46 2.52
585 586 3.937079 CCGCTTTAATACGGTCCTTTTCT 59.063 43.478 8.19 0.00 44.46 2.52
586 587 4.268767 CCGCTTTAATACGGTCCTTTTC 57.731 45.455 8.19 0.00 44.46 2.29
595 596 6.823678 ACTTGAGAATACCGCTTTAATACG 57.176 37.500 0.00 0.00 0.00 3.06
601 602 4.825085 TCCAAAACTTGAGAATACCGCTTT 59.175 37.500 0.00 0.00 0.00 3.51
628 629 6.183360 CCTCAAACTCGGAAACTGATCAATAC 60.183 42.308 0.00 0.00 0.00 1.89
633 634 3.680458 GTCCTCAAACTCGGAAACTGATC 59.320 47.826 0.00 0.00 0.00 2.92
683 684 7.125659 TCAGAGGAGTAAATGAATGTATGGTCA 59.874 37.037 0.00 0.00 0.00 4.02
764 765 2.693074 AGACAACCTGACGGCAATTTTT 59.307 40.909 0.00 0.00 0.00 1.94
765 766 2.034558 CAGACAACCTGACGGCAATTTT 59.965 45.455 0.00 0.00 45.78 1.82
769 770 1.826709 TCAGACAACCTGACGGCAA 59.173 52.632 0.00 0.00 46.38 4.52
992 2769 0.886490 CTTGGATGCCATCGGTAGCC 60.886 60.000 0.00 0.00 44.04 3.93
1118 2898 3.849951 CCATCGGCGGCAGGTACT 61.850 66.667 10.53 0.00 43.88 2.73
1290 3085 1.552792 TCGTAGACATGGCCATTGTCA 59.447 47.619 31.95 21.95 35.23 3.58
1302 3097 3.771978 TGGCACAGCTCGTAGACA 58.228 55.556 0.00 0.00 0.00 3.41
1596 3391 2.322161 TCTACGCTCTAAAACGTGTGC 58.678 47.619 0.00 0.00 43.44 4.57
1637 3432 9.248291 CATTTATTTTGGAACGGAGGAAATATG 57.752 33.333 0.00 0.00 0.00 1.78
1638 3433 9.196139 TCATTTATTTTGGAACGGAGGAAATAT 57.804 29.630 0.00 0.00 0.00 1.28
1641 3436 6.492087 AGTCATTTATTTTGGAACGGAGGAAA 59.508 34.615 0.00 0.00 0.00 3.13
1644 3439 5.414454 TGAGTCATTTATTTTGGAACGGAGG 59.586 40.000 0.00 0.00 0.00 4.30
1645 3440 6.494893 TGAGTCATTTATTTTGGAACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
1647 3442 6.677913 ACTTGAGTCATTTATTTTGGAACGG 58.322 36.000 0.00 0.00 0.00 4.44
1649 3444 9.313118 ACAAACTTGAGTCATTTATTTTGGAAC 57.687 29.630 9.57 0.00 0.00 3.62
1652 3447 9.743057 TGTACAAACTTGAGTCATTTATTTTGG 57.257 29.630 0.00 0.00 0.00 3.28
1661 3456 5.930135 ACTCCTTGTACAAACTTGAGTCAT 58.070 37.500 17.34 3.54 0.00 3.06
1705 3547 9.597170 GAACTTATATTTAGGAACGAAGACCTT 57.403 33.333 0.00 0.00 38.45 3.50
1731 3573 9.413734 ACATATTCCCTCCAAAATCTCTAAAAG 57.586 33.333 0.00 0.00 0.00 2.27
1769 3611 9.806448 TGGTGGAGTTGCATATAAATACATATT 57.194 29.630 0.00 0.00 0.00 1.28
1773 3615 7.946381 TTTGGTGGAGTTGCATATAAATACA 57.054 32.000 0.00 0.00 0.00 2.29
1808 3650 1.002624 TTGCCGAACAGCCCCTAAG 60.003 57.895 0.00 0.00 0.00 2.18
1809 3651 1.302993 GTTGCCGAACAGCCCCTAA 60.303 57.895 0.00 0.00 31.78 2.69
1810 3652 2.349755 GTTGCCGAACAGCCCCTA 59.650 61.111 0.00 0.00 31.78 3.53
1814 3656 4.090057 GAGCGTTGCCGAACAGCC 62.090 66.667 0.00 0.00 34.29 4.85
1815 3657 4.090057 GGAGCGTTGCCGAACAGC 62.090 66.667 0.00 0.00 35.63 4.40
1829 3671 1.738099 CGGAAGTTGTGGAGCGGAG 60.738 63.158 0.00 0.00 0.00 4.63
1830 3672 1.750341 TTCGGAAGTTGTGGAGCGGA 61.750 55.000 0.00 0.00 0.00 5.54
1831 3673 1.291877 CTTCGGAAGTTGTGGAGCGG 61.292 60.000 9.61 0.00 0.00 5.52
1832 3674 1.901650 GCTTCGGAAGTTGTGGAGCG 61.902 60.000 18.32 0.00 0.00 5.03
1833 3675 1.869690 GCTTCGGAAGTTGTGGAGC 59.130 57.895 18.32 0.00 0.00 4.70
1834 3676 2.153913 CGCTTCGGAAGTTGTGGAG 58.846 57.895 18.32 0.00 0.00 3.86
1835 3677 4.354155 CGCTTCGGAAGTTGTGGA 57.646 55.556 18.32 0.00 0.00 4.02
1846 3688 4.735132 TCCGCCAACTCCGCTTCG 62.735 66.667 0.00 0.00 0.00 3.79
1847 3689 2.815647 CTCCGCCAACTCCGCTTC 60.816 66.667 0.00 0.00 0.00 3.86
1851 3693 2.890847 CTACAGCTCCGCCAACTCCG 62.891 65.000 0.00 0.00 0.00 4.63
1852 3694 1.153549 CTACAGCTCCGCCAACTCC 60.154 63.158 0.00 0.00 0.00 3.85
1853 3695 0.037232 AACTACAGCTCCGCCAACTC 60.037 55.000 0.00 0.00 0.00 3.01
1854 3696 0.396811 AAACTACAGCTCCGCCAACT 59.603 50.000 0.00 0.00 0.00 3.16
1855 3697 2.088950 TAAACTACAGCTCCGCCAAC 57.911 50.000 0.00 0.00 0.00 3.77
1856 3698 2.843401 TTAAACTACAGCTCCGCCAA 57.157 45.000 0.00 0.00 0.00 4.52
1857 3699 2.843401 TTTAAACTACAGCTCCGCCA 57.157 45.000 0.00 0.00 0.00 5.69
1858 3700 3.181500 CCATTTTAAACTACAGCTCCGCC 60.181 47.826 0.00 0.00 0.00 6.13
1859 3701 3.439129 ACCATTTTAAACTACAGCTCCGC 59.561 43.478 0.00 0.00 0.00 5.54
1860 3702 4.142687 CCACCATTTTAAACTACAGCTCCG 60.143 45.833 0.00 0.00 0.00 4.63
1861 3703 5.007682 TCCACCATTTTAAACTACAGCTCC 58.992 41.667 0.00 0.00 0.00 4.70
1862 3704 5.705905 ACTCCACCATTTTAAACTACAGCTC 59.294 40.000 0.00 0.00 0.00 4.09
1863 3705 5.631119 ACTCCACCATTTTAAACTACAGCT 58.369 37.500 0.00 0.00 0.00 4.24
1864 3706 5.959618 ACTCCACCATTTTAAACTACAGC 57.040 39.130 0.00 0.00 0.00 4.40
1865 3707 6.149633 GCAACTCCACCATTTTAAACTACAG 58.850 40.000 0.00 0.00 0.00 2.74
1866 3708 5.010213 GGCAACTCCACCATTTTAAACTACA 59.990 40.000 0.00 0.00 34.01 2.74
1867 3709 5.010213 TGGCAACTCCACCATTTTAAACTAC 59.990 40.000 0.00 0.00 40.72 2.73
1868 3710 5.141182 TGGCAACTCCACCATTTTAAACTA 58.859 37.500 0.00 0.00 40.72 2.24
1869 3711 3.964031 TGGCAACTCCACCATTTTAAACT 59.036 39.130 0.00 0.00 40.72 2.66
1870 3712 4.329462 TGGCAACTCCACCATTTTAAAC 57.671 40.909 0.00 0.00 40.72 2.01
1888 3730 0.737219 CTGCAGAGTGGCTAAATGGC 59.263 55.000 8.42 0.00 42.18 4.40
1889 3731 2.408271 TCTGCAGAGTGGCTAAATGG 57.592 50.000 13.74 0.00 34.04 3.16
1890 3732 4.197750 AGAATCTGCAGAGTGGCTAAATG 58.802 43.478 23.25 0.00 34.04 2.32
1891 3733 4.500499 AGAATCTGCAGAGTGGCTAAAT 57.500 40.909 23.25 0.00 34.04 1.40
1892 3734 3.988976 AGAATCTGCAGAGTGGCTAAA 57.011 42.857 23.25 0.00 34.04 1.85
1893 3735 3.386078 CCTAGAATCTGCAGAGTGGCTAA 59.614 47.826 23.25 2.20 34.04 3.09
1894 3736 2.961741 CCTAGAATCTGCAGAGTGGCTA 59.038 50.000 23.25 15.81 34.04 3.93
1895 3737 1.761784 CCTAGAATCTGCAGAGTGGCT 59.238 52.381 23.25 15.50 34.04 4.75
1896 3738 1.759445 TCCTAGAATCTGCAGAGTGGC 59.241 52.381 23.25 8.15 0.00 5.01
1897 3739 2.224018 GCTCCTAGAATCTGCAGAGTGG 60.224 54.545 23.25 16.59 0.00 4.00
1898 3740 2.429971 TGCTCCTAGAATCTGCAGAGTG 59.570 50.000 23.25 7.17 0.00 3.51
1899 3741 2.744760 TGCTCCTAGAATCTGCAGAGT 58.255 47.619 22.96 20.63 0.00 3.24
1903 3745 2.744760 AGTCTGCTCCTAGAATCTGCA 58.255 47.619 0.00 0.00 0.00 4.41
1904 3746 5.467035 AATAGTCTGCTCCTAGAATCTGC 57.533 43.478 0.00 0.00 0.00 4.26
1905 3747 6.348950 CGGTAATAGTCTGCTCCTAGAATCTG 60.349 46.154 0.00 0.00 0.00 2.90
1906 3748 5.708230 CGGTAATAGTCTGCTCCTAGAATCT 59.292 44.000 0.00 0.00 0.00 2.40
1907 3749 5.706369 TCGGTAATAGTCTGCTCCTAGAATC 59.294 44.000 0.00 0.00 0.00 2.52
1908 3750 5.632118 TCGGTAATAGTCTGCTCCTAGAAT 58.368 41.667 0.00 0.00 0.00 2.40
1909 3751 5.045012 TCGGTAATAGTCTGCTCCTAGAA 57.955 43.478 0.00 0.00 0.00 2.10
1910 3752 4.701651 TCGGTAATAGTCTGCTCCTAGA 57.298 45.455 0.00 0.00 0.00 2.43
1911 3753 4.579340 TGTTCGGTAATAGTCTGCTCCTAG 59.421 45.833 0.00 0.00 0.00 3.02
1912 3754 4.529897 TGTTCGGTAATAGTCTGCTCCTA 58.470 43.478 0.00 0.00 0.00 2.94
1913 3755 3.362706 TGTTCGGTAATAGTCTGCTCCT 58.637 45.455 0.00 0.00 0.00 3.69
1914 3756 3.491104 CCTGTTCGGTAATAGTCTGCTCC 60.491 52.174 0.00 0.00 0.00 4.70
1915 3757 3.491104 CCCTGTTCGGTAATAGTCTGCTC 60.491 52.174 0.00 0.00 0.00 4.26
1916 3758 2.431057 CCCTGTTCGGTAATAGTCTGCT 59.569 50.000 0.00 0.00 0.00 4.24
1917 3759 2.822764 CCCTGTTCGGTAATAGTCTGC 58.177 52.381 0.00 0.00 0.00 4.26
1918 3760 2.483188 GGCCCTGTTCGGTAATAGTCTG 60.483 54.545 0.00 0.00 0.00 3.51
1919 3761 1.761198 GGCCCTGTTCGGTAATAGTCT 59.239 52.381 0.00 0.00 0.00 3.24
1920 3762 1.761198 AGGCCCTGTTCGGTAATAGTC 59.239 52.381 0.00 0.00 0.00 2.59
1921 3763 1.875488 AGGCCCTGTTCGGTAATAGT 58.125 50.000 0.00 0.00 0.00 2.12
1922 3764 3.387050 ACTAAGGCCCTGTTCGGTAATAG 59.613 47.826 0.00 0.00 0.00 1.73
1923 3765 3.377573 ACTAAGGCCCTGTTCGGTAATA 58.622 45.455 0.00 0.00 0.00 0.98
1924 3766 2.169978 GACTAAGGCCCTGTTCGGTAAT 59.830 50.000 0.00 0.00 0.00 1.89
1925 3767 1.551883 GACTAAGGCCCTGTTCGGTAA 59.448 52.381 0.00 0.00 0.00 2.85
1926 3768 1.188863 GACTAAGGCCCTGTTCGGTA 58.811 55.000 0.00 0.00 0.00 4.02
1927 3769 0.544595 AGACTAAGGCCCTGTTCGGT 60.545 55.000 0.00 0.00 0.00 4.69
1928 3770 0.613777 AAGACTAAGGCCCTGTTCGG 59.386 55.000 0.00 0.00 0.00 4.30
1929 3771 1.002087 ACAAGACTAAGGCCCTGTTCG 59.998 52.381 0.00 0.00 0.00 3.95
1930 3772 2.861147 ACAAGACTAAGGCCCTGTTC 57.139 50.000 0.00 0.00 0.00 3.18
1931 3773 4.104831 AGATACAAGACTAAGGCCCTGTT 58.895 43.478 0.00 0.00 0.00 3.16
1932 3774 3.725634 AGATACAAGACTAAGGCCCTGT 58.274 45.455 0.00 0.00 0.00 4.00
1933 3775 5.740513 GCTTAGATACAAGACTAAGGCCCTG 60.741 48.000 0.00 0.00 43.04 4.45
1934 3776 4.345547 GCTTAGATACAAGACTAAGGCCCT 59.654 45.833 0.00 0.00 43.04 5.19
1935 3777 4.101119 TGCTTAGATACAAGACTAAGGCCC 59.899 45.833 0.00 0.00 43.04 5.80
1936 3778 5.277857 TGCTTAGATACAAGACTAAGGCC 57.722 43.478 0.00 0.00 43.04 5.19
1937 3779 6.986817 TGAATGCTTAGATACAAGACTAAGGC 59.013 38.462 0.00 0.00 43.04 4.35
1938 3780 9.553064 AATGAATGCTTAGATACAAGACTAAGG 57.447 33.333 0.00 0.00 43.04 2.69
2265 4114 9.236006 ACTAGTGAAAAATTCAGTCATTATGCT 57.764 29.630 0.00 0.00 42.16 3.79
2352 4201 6.303839 ACCAAGTTCCTAAATCAGTTTGCTA 58.696 36.000 0.00 0.00 0.00 3.49
2501 4354 1.220529 AATACATCACATGCCTCGCG 58.779 50.000 0.00 0.00 0.00 5.87
2521 4374 1.160137 GTCGTGTACCACCTACGTCT 58.840 55.000 0.00 0.00 38.80 4.18
2560 4413 1.675641 GCCTCAAGTCGCCCACATT 60.676 57.895 0.00 0.00 0.00 2.71
2565 4418 3.296709 TTCTCGCCTCAAGTCGCCC 62.297 63.158 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.