Multiple sequence alignment - TraesCS3D01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G249900 chr3D 100.000 2714 0 0 1 2714 349861788 349864501 0.000000e+00 5012
1 TraesCS3D01G249900 chr3D 84.780 841 105 13 897 1725 350673618 350672789 0.000000e+00 822
2 TraesCS3D01G249900 chr3D 100.000 434 0 0 2206 2639 349869483 349869916 0.000000e+00 802
3 TraesCS3D01G249900 chr3B 91.622 1313 75 16 471 1754 448778313 448779619 0.000000e+00 1783
4 TraesCS3D01G249900 chr3B 85.290 809 95 14 929 1725 449016451 449015655 0.000000e+00 813
5 TraesCS3D01G249900 chr3B 87.810 484 36 7 1 469 448777569 448778044 1.840000e-151 545
6 TraesCS3D01G249900 chr3A 92.724 1127 51 16 740 1842 468006591 468007710 0.000000e+00 1598
7 TraesCS3D01G249900 chr3A 88.462 754 61 15 16 753 468004251 468004994 0.000000e+00 887
8 TraesCS3D01G249900 chr3A 84.888 847 103 14 893 1725 468299344 468298509 0.000000e+00 832
9 TraesCS3D01G249900 chr3A 92.927 509 35 1 2206 2714 28862875 28862368 0.000000e+00 739
10 TraesCS3D01G249900 chr3A 93.287 432 29 0 2208 2639 28786015 28785584 2.950000e-179 638
11 TraesCS3D01G249900 chr4D 98.035 509 10 0 2206 2714 214344299 214343791 0.000000e+00 885
12 TraesCS3D01G249900 chr4D 98.391 435 7 0 2206 2640 214338802 214338368 0.000000e+00 765
13 TraesCS3D01G249900 chr5D 95.622 434 19 0 2206 2639 35851038 35851471 0.000000e+00 697
14 TraesCS3D01G249900 chr7B 85.249 522 67 8 2198 2714 698011668 698012184 1.850000e-146 529
15 TraesCS3D01G249900 chr7B 85.057 522 68 8 2198 2714 698106048 698106564 8.610000e-145 523
16 TraesCS3D01G249900 chrUn 85.057 522 68 8 2198 2714 170468306 170468822 8.610000e-145 523


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G249900 chr3D 349861788 349864501 2713 False 5012.0 5012 100.000 1 2714 1 chr3D.!!$F1 2713
1 TraesCS3D01G249900 chr3D 350672789 350673618 829 True 822.0 822 84.780 897 1725 1 chr3D.!!$R1 828
2 TraesCS3D01G249900 chr3B 448777569 448779619 2050 False 1164.0 1783 89.716 1 1754 2 chr3B.!!$F1 1753
3 TraesCS3D01G249900 chr3B 449015655 449016451 796 True 813.0 813 85.290 929 1725 1 chr3B.!!$R1 796
4 TraesCS3D01G249900 chr3A 468004251 468007710 3459 False 1242.5 1598 90.593 16 1842 2 chr3A.!!$F1 1826
5 TraesCS3D01G249900 chr3A 468298509 468299344 835 True 832.0 832 84.888 893 1725 1 chr3A.!!$R3 832
6 TraesCS3D01G249900 chr3A 28862368 28862875 507 True 739.0 739 92.927 2206 2714 1 chr3A.!!$R2 508
7 TraesCS3D01G249900 chr4D 214343791 214344299 508 True 885.0 885 98.035 2206 2714 1 chr4D.!!$R2 508
8 TraesCS3D01G249900 chr7B 698011668 698012184 516 False 529.0 529 85.249 2198 2714 1 chr7B.!!$F1 516
9 TraesCS3D01G249900 chr7B 698106048 698106564 516 False 523.0 523 85.057 2198 2714 1 chr7B.!!$F2 516
10 TraesCS3D01G249900 chrUn 170468306 170468822 516 False 523.0 523 85.057 2198 2714 1 chrUn.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 2731 0.107703 TGCACACTTCATCGGGATCC 60.108 55.0 1.92 1.92 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 4047 0.108396 TGCAGTTCTGCAGGTGCTAA 59.892 50.0 26.43 12.63 40.23 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.851720 CATGTAGAGTCATGCAGAGGTTAT 58.148 41.667 0.00 0.00 38.65 1.89
64 65 8.035394 ACACTCATTATGTGTCGTATCTCTTTT 58.965 33.333 0.00 0.00 44.24 2.27
167 169 8.746922 TTTTTGAATTACAGAATGACTCATGC 57.253 30.769 0.00 0.00 39.69 4.06
212 215 5.220681 GGTTGTGACTTTCTCAAGAAGTGAC 60.221 44.000 0.64 0.64 35.21 3.67
285 298 2.108566 CTCTCATCCTGCCGCTGG 59.891 66.667 9.98 9.98 0.00 4.85
316 329 2.501128 CGACCTCCATCGGTGCAT 59.499 61.111 0.00 0.00 37.42 3.96
322 335 1.012086 CTCCATCGGTGCATGACAAG 58.988 55.000 0.00 0.00 0.00 3.16
324 337 0.448990 CCATCGGTGCATGACAAGTG 59.551 55.000 0.00 0.00 0.00 3.16
422 440 1.160137 GAGGAGCGACAGTTTGCAAT 58.840 50.000 0.00 0.00 34.03 3.56
491 776 5.938322 ACTAAGCATATGTGTTGTTTTCCG 58.062 37.500 4.29 0.00 0.00 4.30
535 820 6.158598 GCTTTCAAATGGTGAATTAAGAGCA 58.841 36.000 5.32 0.00 45.71 4.26
609 894 8.702163 AATTATAAAAGGACAATTTTGAGGCG 57.298 30.769 0.00 0.00 34.35 5.52
623 908 1.599071 TGAGGCGTATAACCGTAGTCG 59.401 52.381 0.00 0.00 0.00 4.18
664 949 6.770542 TGTGTATGTGTGTTCAATTACCCTA 58.229 36.000 0.00 0.00 0.00 3.53
741 1032 3.523564 TGGAAATAGAAGGAGAAGGGGTG 59.476 47.826 0.00 0.00 0.00 4.61
759 2662 2.028748 GGTGAAAGAACGTGGGCTACTA 60.029 50.000 0.00 0.00 0.00 1.82
828 2731 0.107703 TGCACACTTCATCGGGATCC 60.108 55.000 1.92 1.92 0.00 3.36
913 2836 6.016024 TCGGTCTTTATATATTGGCGTACTGT 60.016 38.462 0.00 0.00 0.00 3.55
921 2844 0.806868 TTGGCGTACTGTCCTAGTCG 59.193 55.000 0.00 0.00 40.89 4.18
1044 2967 1.405463 GGGCGATCCTTGTGGAATTTC 59.595 52.381 0.00 0.00 46.80 2.17
1186 3124 2.237393 ATTCGCTCTCTTGATCTGGC 57.763 50.000 0.00 0.00 0.00 4.85
1210 3148 2.103736 GGACGGCGTACTGCTACC 59.896 66.667 16.54 5.35 45.43 3.18
1483 3421 3.311110 GGCTGTCGTGGGACTGGA 61.311 66.667 3.81 0.00 43.79 3.86
1507 3448 4.373116 GCGTTGGTCTGCCGGAGA 62.373 66.667 5.05 1.90 37.67 3.71
1570 3511 2.997897 AGGTCGAGGTCCAGGTGC 60.998 66.667 0.00 0.00 0.00 5.01
1735 3682 1.388547 GCCTCCGGTAATGCAATCAA 58.611 50.000 0.00 0.00 0.00 2.57
1738 3685 3.058224 GCCTCCGGTAATGCAATCAATAC 60.058 47.826 0.00 0.00 0.00 1.89
1739 3686 4.389374 CCTCCGGTAATGCAATCAATACT 58.611 43.478 0.00 0.00 0.00 2.12
1740 3687 5.547465 CCTCCGGTAATGCAATCAATACTA 58.453 41.667 0.00 0.00 0.00 1.82
1741 3688 5.408604 CCTCCGGTAATGCAATCAATACTAC 59.591 44.000 0.00 0.00 0.00 2.73
1759 3706 8.451748 CAATACTACTTCTTTTCTTTACCTGGC 58.548 37.037 0.00 0.00 0.00 4.85
1760 3707 6.189036 ACTACTTCTTTTCTTTACCTGGCT 57.811 37.500 0.00 0.00 0.00 4.75
1761 3708 7.312415 ACTACTTCTTTTCTTTACCTGGCTA 57.688 36.000 0.00 0.00 0.00 3.93
1762 3709 7.160049 ACTACTTCTTTTCTTTACCTGGCTAC 58.840 38.462 0.00 0.00 0.00 3.58
1763 3710 5.937111 ACTTCTTTTCTTTACCTGGCTACA 58.063 37.500 0.00 0.00 0.00 2.74
1764 3711 6.362248 ACTTCTTTTCTTTACCTGGCTACAA 58.638 36.000 0.00 0.00 0.00 2.41
1765 3712 6.486993 ACTTCTTTTCTTTACCTGGCTACAAG 59.513 38.462 0.00 0.00 0.00 3.16
1766 3713 5.937111 TCTTTTCTTTACCTGGCTACAAGT 58.063 37.500 0.00 0.00 0.00 3.16
1767 3714 7.069877 TCTTTTCTTTACCTGGCTACAAGTA 57.930 36.000 0.00 0.00 0.00 2.24
1770 3717 9.444600 CTTTTCTTTACCTGGCTACAAGTATAA 57.555 33.333 0.00 0.00 0.00 0.98
1771 3718 9.444600 TTTTCTTTACCTGGCTACAAGTATAAG 57.555 33.333 0.00 0.00 0.00 1.73
1772 3719 7.966339 TCTTTACCTGGCTACAAGTATAAGA 57.034 36.000 0.00 0.00 0.00 2.10
1773 3720 8.548880 TCTTTACCTGGCTACAAGTATAAGAT 57.451 34.615 0.00 0.00 0.00 2.40
1774 3721 8.989131 TCTTTACCTGGCTACAAGTATAAGATT 58.011 33.333 0.00 0.00 0.00 2.40
1775 3722 8.958119 TTTACCTGGCTACAAGTATAAGATTG 57.042 34.615 0.00 0.00 0.00 2.67
1778 3725 8.492415 ACCTGGCTACAAGTATAAGATTGATA 57.508 34.615 0.00 0.00 0.00 2.15
1780 3727 7.547370 CCTGGCTACAAGTATAAGATTGATAGC 59.453 40.741 13.02 13.02 36.45 2.97
1781 3728 7.962441 TGGCTACAAGTATAAGATTGATAGCA 58.038 34.615 17.62 0.00 37.54 3.49
1808 3767 7.468922 CTTGATTCTAAGCATGACACGATAA 57.531 36.000 0.00 0.00 0.00 1.75
1820 3779 6.147656 GCATGACACGATAATATCAATGTCCA 59.852 38.462 21.89 14.71 41.14 4.02
1842 3801 2.698855 TCTCAAATGACCTGCCTAGC 57.301 50.000 0.00 0.00 0.00 3.42
1843 3802 1.908619 TCTCAAATGACCTGCCTAGCA 59.091 47.619 0.00 0.00 36.92 3.49
1844 3803 2.507058 TCTCAAATGACCTGCCTAGCAT 59.493 45.455 0.00 0.00 38.13 3.79
1845 3804 2.877168 CTCAAATGACCTGCCTAGCATC 59.123 50.000 0.00 0.00 38.13 3.91
1846 3805 2.239402 TCAAATGACCTGCCTAGCATCA 59.761 45.455 0.00 0.00 38.13 3.07
1847 3806 2.617308 CAAATGACCTGCCTAGCATCAG 59.383 50.000 0.00 0.00 38.13 2.90
1860 3819 1.964552 GCATCAGGCTGCTAATCTGT 58.035 50.000 10.34 0.00 39.12 3.41
1861 3820 2.295885 GCATCAGGCTGCTAATCTGTT 58.704 47.619 10.34 0.00 39.12 3.16
1862 3821 2.686915 GCATCAGGCTGCTAATCTGTTT 59.313 45.455 10.34 0.00 39.12 2.83
1863 3822 3.488721 GCATCAGGCTGCTAATCTGTTTG 60.489 47.826 10.34 3.00 39.12 2.93
1864 3823 2.715046 TCAGGCTGCTAATCTGTTTGG 58.285 47.619 10.34 0.00 0.00 3.28
1865 3824 1.747355 CAGGCTGCTAATCTGTTTGGG 59.253 52.381 0.00 0.00 0.00 4.12
1866 3825 1.355720 AGGCTGCTAATCTGTTTGGGT 59.644 47.619 0.00 0.00 0.00 4.51
1867 3826 1.474077 GGCTGCTAATCTGTTTGGGTG 59.526 52.381 0.00 0.00 0.00 4.61
1868 3827 1.135286 GCTGCTAATCTGTTTGGGTGC 60.135 52.381 0.00 0.00 0.00 5.01
1869 3828 1.474077 CTGCTAATCTGTTTGGGTGCC 59.526 52.381 0.00 0.00 0.00 5.01
1870 3829 1.202989 TGCTAATCTGTTTGGGTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
1871 3830 1.474077 GCTAATCTGTTTGGGTGCCAG 59.526 52.381 0.00 0.00 33.81 4.85
1872 3831 2.879756 GCTAATCTGTTTGGGTGCCAGA 60.880 50.000 0.00 0.00 39.38 3.86
1873 3832 1.915141 AATCTGTTTGGGTGCCAGAG 58.085 50.000 0.00 0.00 38.52 3.35
1874 3833 1.067295 ATCTGTTTGGGTGCCAGAGA 58.933 50.000 0.00 0.00 38.52 3.10
1875 3834 0.843309 TCTGTTTGGGTGCCAGAGAA 59.157 50.000 0.00 0.00 33.81 2.87
1876 3835 1.214175 TCTGTTTGGGTGCCAGAGAAA 59.786 47.619 0.00 0.00 33.81 2.52
1877 3836 2.031120 CTGTTTGGGTGCCAGAGAAAA 58.969 47.619 0.00 0.00 33.81 2.29
1878 3837 2.629617 CTGTTTGGGTGCCAGAGAAAAT 59.370 45.455 0.00 0.00 33.81 1.82
1879 3838 3.826157 CTGTTTGGGTGCCAGAGAAAATA 59.174 43.478 0.00 0.00 33.81 1.40
1880 3839 4.415596 TGTTTGGGTGCCAGAGAAAATAT 58.584 39.130 0.00 0.00 33.81 1.28
1881 3840 4.837860 TGTTTGGGTGCCAGAGAAAATATT 59.162 37.500 0.00 0.00 33.81 1.28
1882 3841 5.170748 GTTTGGGTGCCAGAGAAAATATTG 58.829 41.667 0.00 0.00 33.81 1.90
1883 3842 3.364549 TGGGTGCCAGAGAAAATATTGG 58.635 45.455 0.00 0.00 0.00 3.16
1884 3843 3.011144 TGGGTGCCAGAGAAAATATTGGA 59.989 43.478 0.00 0.00 32.34 3.53
1885 3844 3.633986 GGGTGCCAGAGAAAATATTGGAG 59.366 47.826 0.00 0.00 32.34 3.86
1886 3845 4.526970 GGTGCCAGAGAAAATATTGGAGA 58.473 43.478 0.00 0.00 32.34 3.71
1887 3846 5.136105 GGTGCCAGAGAAAATATTGGAGAT 58.864 41.667 0.00 0.00 32.34 2.75
1888 3847 5.595952 GGTGCCAGAGAAAATATTGGAGATT 59.404 40.000 0.00 0.00 32.34 2.40
1889 3848 6.097412 GGTGCCAGAGAAAATATTGGAGATTT 59.903 38.462 0.00 0.00 32.34 2.17
1890 3849 7.364144 GGTGCCAGAGAAAATATTGGAGATTTT 60.364 37.037 0.00 0.00 38.81 1.82
1891 3850 7.704047 GTGCCAGAGAAAATATTGGAGATTTTC 59.296 37.037 10.99 10.99 46.62 2.29
1908 3867 9.561270 GGAGATTTTCTAGTTTGAAAACATAGC 57.439 33.333 8.53 0.00 45.08 2.97
1937 3896 5.835113 TTTCCCTTTATGCTTATGACAGC 57.165 39.130 0.00 0.00 40.55 4.40
1938 3897 4.778213 TCCCTTTATGCTTATGACAGCT 57.222 40.909 0.00 0.00 40.79 4.24
1939 3898 5.116084 TCCCTTTATGCTTATGACAGCTT 57.884 39.130 0.00 0.00 40.79 3.74
1940 3899 5.509498 TCCCTTTATGCTTATGACAGCTTT 58.491 37.500 0.00 0.00 40.79 3.51
1941 3900 5.357878 TCCCTTTATGCTTATGACAGCTTTG 59.642 40.000 0.00 0.00 40.79 2.77
1942 3901 5.450965 CCCTTTATGCTTATGACAGCTTTGG 60.451 44.000 0.00 0.00 40.79 3.28
1943 3902 5.357878 CCTTTATGCTTATGACAGCTTTGGA 59.642 40.000 0.00 0.00 40.79 3.53
1944 3903 6.040166 CCTTTATGCTTATGACAGCTTTGGAT 59.960 38.462 0.00 0.00 40.79 3.41
1945 3904 7.408756 TTTATGCTTATGACAGCTTTGGATT 57.591 32.000 0.00 0.00 40.79 3.01
1946 3905 8.518430 TTTATGCTTATGACAGCTTTGGATTA 57.482 30.769 0.00 0.00 40.79 1.75
1947 3906 6.630444 ATGCTTATGACAGCTTTGGATTAG 57.370 37.500 0.00 0.00 40.79 1.73
1948 3907 5.744171 TGCTTATGACAGCTTTGGATTAGA 58.256 37.500 0.00 0.00 40.79 2.10
1949 3908 6.179756 TGCTTATGACAGCTTTGGATTAGAA 58.820 36.000 0.00 0.00 40.79 2.10
1950 3909 6.658816 TGCTTATGACAGCTTTGGATTAGAAA 59.341 34.615 0.00 0.00 40.79 2.52
1951 3910 7.340232 TGCTTATGACAGCTTTGGATTAGAAAT 59.660 33.333 0.00 0.00 40.79 2.17
1952 3911 8.193438 GCTTATGACAGCTTTGGATTAGAAATT 58.807 33.333 0.00 0.00 36.79 1.82
1956 3915 8.862325 TGACAGCTTTGGATTAGAAATTTAGA 57.138 30.769 0.00 0.00 0.00 2.10
1957 3916 9.295825 TGACAGCTTTGGATTAGAAATTTAGAA 57.704 29.630 0.00 0.00 0.00 2.10
1958 3917 9.561270 GACAGCTTTGGATTAGAAATTTAGAAC 57.439 33.333 0.00 0.00 0.00 3.01
1959 3918 9.077885 ACAGCTTTGGATTAGAAATTTAGAACA 57.922 29.630 0.00 0.00 0.00 3.18
1960 3919 9.912634 CAGCTTTGGATTAGAAATTTAGAACAA 57.087 29.630 0.00 0.00 0.00 2.83
1965 3924 7.703328 TGGATTAGAAATTTAGAACAATCGGC 58.297 34.615 0.00 0.00 0.00 5.54
1966 3925 7.556275 TGGATTAGAAATTTAGAACAATCGGCT 59.444 33.333 0.00 0.00 0.00 5.52
1967 3926 8.070769 GGATTAGAAATTTAGAACAATCGGCTC 58.929 37.037 0.00 0.00 0.00 4.70
1968 3927 8.738645 ATTAGAAATTTAGAACAATCGGCTCT 57.261 30.769 0.00 0.00 0.00 4.09
1969 3928 9.832445 ATTAGAAATTTAGAACAATCGGCTCTA 57.168 29.630 0.00 0.00 0.00 2.43
1970 3929 7.541122 AGAAATTTAGAACAATCGGCTCTAC 57.459 36.000 0.00 0.00 0.00 2.59
1971 3930 7.103641 AGAAATTTAGAACAATCGGCTCTACA 58.896 34.615 0.00 0.00 0.00 2.74
1972 3931 7.770897 AGAAATTTAGAACAATCGGCTCTACAT 59.229 33.333 0.00 0.00 0.00 2.29
1973 3932 6.851222 ATTTAGAACAATCGGCTCTACATG 57.149 37.500 0.00 0.00 0.00 3.21
1974 3933 5.592104 TTAGAACAATCGGCTCTACATGA 57.408 39.130 0.00 0.00 0.00 3.07
1975 3934 4.471904 AGAACAATCGGCTCTACATGAA 57.528 40.909 0.00 0.00 0.00 2.57
1976 3935 4.184629 AGAACAATCGGCTCTACATGAAC 58.815 43.478 0.00 0.00 0.00 3.18
1977 3936 2.906354 ACAATCGGCTCTACATGAACC 58.094 47.619 0.00 0.00 0.00 3.62
1978 3937 2.213499 CAATCGGCTCTACATGAACCC 58.787 52.381 0.00 0.00 0.00 4.11
1979 3938 1.496060 ATCGGCTCTACATGAACCCA 58.504 50.000 0.00 0.00 0.00 4.51
1980 3939 1.496060 TCGGCTCTACATGAACCCAT 58.504 50.000 0.00 0.00 0.00 4.00
1992 3951 4.398319 CATGAACCCATGGTCCTTATACC 58.602 47.826 11.73 0.00 44.88 2.73
1993 3952 3.743132 TGAACCCATGGTCCTTATACCT 58.257 45.455 11.73 0.00 40.44 3.08
1994 3953 3.714798 TGAACCCATGGTCCTTATACCTC 59.285 47.826 11.73 0.00 40.44 3.85
1995 3954 2.326428 ACCCATGGTCCTTATACCTCG 58.674 52.381 11.73 0.00 40.44 4.63
1996 3955 2.090943 ACCCATGGTCCTTATACCTCGA 60.091 50.000 11.73 0.00 40.44 4.04
1997 3956 2.299297 CCCATGGTCCTTATACCTCGAC 59.701 54.545 11.73 0.00 40.44 4.20
1998 3957 2.963101 CCATGGTCCTTATACCTCGACA 59.037 50.000 2.57 0.00 40.44 4.35
1999 3958 3.005897 CCATGGTCCTTATACCTCGACAG 59.994 52.174 2.57 0.00 40.44 3.51
2000 3959 3.657398 TGGTCCTTATACCTCGACAGA 57.343 47.619 0.00 0.00 40.44 3.41
2001 3960 3.552875 TGGTCCTTATACCTCGACAGAG 58.447 50.000 0.00 0.00 43.98 3.35
2033 3992 8.723942 TCCTTCTAAGAAGAAAGAATACATGC 57.276 34.615 0.00 0.00 41.19 4.06
2034 3993 8.543774 TCCTTCTAAGAAGAAAGAATACATGCT 58.456 33.333 0.00 0.00 41.19 3.79
2035 3994 9.823647 CCTTCTAAGAAGAAAGAATACATGCTA 57.176 33.333 0.00 0.00 41.19 3.49
2037 3996 8.879342 TCTAAGAAGAAAGAATACATGCTAGC 57.121 34.615 8.10 8.10 0.00 3.42
2038 3997 8.700051 TCTAAGAAGAAAGAATACATGCTAGCT 58.300 33.333 17.23 0.00 0.00 3.32
2039 3998 9.973450 CTAAGAAGAAAGAATACATGCTAGCTA 57.027 33.333 17.23 2.58 0.00 3.32
2040 3999 8.655651 AAGAAGAAAGAATACATGCTAGCTAC 57.344 34.615 17.23 0.00 0.00 3.58
2041 4000 7.213678 AGAAGAAAGAATACATGCTAGCTACC 58.786 38.462 17.23 0.00 0.00 3.18
2042 4001 6.739331 AGAAAGAATACATGCTAGCTACCT 57.261 37.500 17.23 0.79 0.00 3.08
2043 4002 6.520272 AGAAAGAATACATGCTAGCTACCTG 58.480 40.000 17.23 10.46 0.00 4.00
2044 4003 4.264460 AGAATACATGCTAGCTACCTGC 57.736 45.455 17.23 0.00 43.29 4.85
2055 4014 2.086054 GCTACCTGCGGGAGATTATG 57.914 55.000 21.41 0.90 36.25 1.90
2056 4015 1.941668 GCTACCTGCGGGAGATTATGC 60.942 57.143 21.41 7.42 36.25 3.14
2057 4016 1.344438 CTACCTGCGGGAGATTATGCA 59.656 52.381 21.41 0.00 36.25 3.96
2058 4017 0.767375 ACCTGCGGGAGATTATGCAT 59.233 50.000 21.41 3.79 36.64 3.96
2059 4018 1.143684 ACCTGCGGGAGATTATGCATT 59.856 47.619 21.41 0.00 36.64 3.56
2060 4019 1.808945 CCTGCGGGAGATTATGCATTC 59.191 52.381 5.28 0.00 36.64 2.67
2061 4020 1.462283 CTGCGGGAGATTATGCATTCG 59.538 52.381 3.54 0.00 36.64 3.34
2062 4021 1.202639 TGCGGGAGATTATGCATTCGT 60.203 47.619 3.54 0.00 31.31 3.85
2063 4022 2.036604 TGCGGGAGATTATGCATTCGTA 59.963 45.455 3.54 0.00 31.31 3.43
2064 4023 3.262420 GCGGGAGATTATGCATTCGTAT 58.738 45.455 3.54 0.00 0.00 3.06
2065 4024 3.307242 GCGGGAGATTATGCATTCGTATC 59.693 47.826 3.54 3.73 0.00 2.24
2066 4025 3.547868 CGGGAGATTATGCATTCGTATCG 59.452 47.826 3.54 0.00 0.00 2.92
2067 4026 4.674362 CGGGAGATTATGCATTCGTATCGA 60.674 45.833 3.54 0.00 0.00 3.59
2068 4027 4.563184 GGGAGATTATGCATTCGTATCGAC 59.437 45.833 3.54 4.14 34.89 4.20
2082 4041 4.715520 GTATCGACGATCATGCATTTGT 57.284 40.909 14.80 0.00 0.00 2.83
2083 4042 5.822584 GTATCGACGATCATGCATTTGTA 57.177 39.130 14.80 0.00 0.00 2.41
2084 4043 6.210396 GTATCGACGATCATGCATTTGTAA 57.790 37.500 14.80 0.00 0.00 2.41
2085 4044 5.733226 ATCGACGATCATGCATTTGTAAA 57.267 34.783 4.05 0.00 0.00 2.01
2086 4045 4.892655 TCGACGATCATGCATTTGTAAAC 58.107 39.130 0.00 0.00 0.00 2.01
2087 4046 4.629634 TCGACGATCATGCATTTGTAAACT 59.370 37.500 0.00 0.00 0.00 2.66
2088 4047 5.121611 TCGACGATCATGCATTTGTAAACTT 59.878 36.000 0.00 0.00 0.00 2.66
2089 4048 5.794945 CGACGATCATGCATTTGTAAACTTT 59.205 36.000 0.00 0.00 0.00 2.66
2090 4049 6.958752 CGACGATCATGCATTTGTAAACTTTA 59.041 34.615 0.00 0.00 0.00 1.85
2091 4050 7.162546 CGACGATCATGCATTTGTAAACTTTAG 59.837 37.037 0.00 0.00 0.00 1.85
2092 4051 6.747280 ACGATCATGCATTTGTAAACTTTAGC 59.253 34.615 0.00 0.00 0.00 3.09
2093 4052 6.746822 CGATCATGCATTTGTAAACTTTAGCA 59.253 34.615 0.00 0.00 35.03 3.49
2094 4053 7.253420 CGATCATGCATTTGTAAACTTTAGCAC 60.253 37.037 0.00 0.00 33.18 4.40
2095 4054 6.155827 TCATGCATTTGTAAACTTTAGCACC 58.844 36.000 0.00 0.00 33.18 5.01
2096 4055 5.782893 TGCATTTGTAAACTTTAGCACCT 57.217 34.783 0.00 0.00 0.00 4.00
2097 4056 5.527951 TGCATTTGTAAACTTTAGCACCTG 58.472 37.500 0.00 0.00 0.00 4.00
2098 4057 4.385748 GCATTTGTAAACTTTAGCACCTGC 59.614 41.667 0.00 0.00 42.49 4.85
2099 4058 5.527951 CATTTGTAAACTTTAGCACCTGCA 58.472 37.500 0.00 0.00 45.16 4.41
2100 4059 4.829064 TTGTAAACTTTAGCACCTGCAG 57.171 40.909 6.78 6.78 45.16 4.41
2101 4060 4.079980 TGTAAACTTTAGCACCTGCAGA 57.920 40.909 17.39 0.00 45.16 4.26
2102 4061 4.456535 TGTAAACTTTAGCACCTGCAGAA 58.543 39.130 17.39 0.00 45.16 3.02
2103 4062 3.990318 AAACTTTAGCACCTGCAGAAC 57.010 42.857 17.39 3.67 45.16 3.01
2104 4063 2.938956 ACTTTAGCACCTGCAGAACT 57.061 45.000 17.39 11.65 45.16 3.01
2105 4064 2.498167 ACTTTAGCACCTGCAGAACTG 58.502 47.619 17.39 8.44 45.16 3.16
2118 4077 3.921119 CAGAACTGCATGCTTACCAAA 57.079 42.857 20.33 0.00 0.00 3.28
2119 4078 3.568538 CAGAACTGCATGCTTACCAAAC 58.431 45.455 20.33 2.61 0.00 2.93
2120 4079 3.004629 CAGAACTGCATGCTTACCAAACA 59.995 43.478 20.33 0.00 0.00 2.83
2121 4080 3.828451 AGAACTGCATGCTTACCAAACAT 59.172 39.130 20.33 0.00 0.00 2.71
2122 4081 5.009631 AGAACTGCATGCTTACCAAACATA 58.990 37.500 20.33 0.00 0.00 2.29
2123 4082 4.701956 ACTGCATGCTTACCAAACATAC 57.298 40.909 20.33 0.00 0.00 2.39
2124 4083 4.078537 ACTGCATGCTTACCAAACATACA 58.921 39.130 20.33 0.00 0.00 2.29
2125 4084 4.156556 ACTGCATGCTTACCAAACATACAG 59.843 41.667 20.33 4.80 39.85 2.74
2126 4085 3.443329 TGCATGCTTACCAAACATACAGG 59.557 43.478 20.33 0.00 0.00 4.00
2127 4086 3.734902 GCATGCTTACCAAACATACAGGC 60.735 47.826 11.37 0.00 0.00 4.85
2128 4087 3.147553 TGCTTACCAAACATACAGGCA 57.852 42.857 0.00 0.00 0.00 4.75
2129 4088 3.491342 TGCTTACCAAACATACAGGCAA 58.509 40.909 0.00 0.00 0.00 4.52
2130 4089 3.505680 TGCTTACCAAACATACAGGCAAG 59.494 43.478 0.00 0.00 0.00 4.01
2131 4090 3.506067 GCTTACCAAACATACAGGCAAGT 59.494 43.478 0.00 0.00 30.17 3.16
2132 4091 4.022329 GCTTACCAAACATACAGGCAAGTT 60.022 41.667 0.00 0.00 30.17 2.66
2133 4092 5.508994 GCTTACCAAACATACAGGCAAGTTT 60.509 40.000 0.00 0.00 34.78 2.66
2134 4093 6.472686 TTACCAAACATACAGGCAAGTTTT 57.527 33.333 0.00 0.00 32.34 2.43
2135 4094 4.944048 ACCAAACATACAGGCAAGTTTTC 58.056 39.130 0.00 0.00 32.34 2.29
2136 4095 4.202212 ACCAAACATACAGGCAAGTTTTCC 60.202 41.667 0.00 0.00 32.34 3.13
2137 4096 4.039124 CCAAACATACAGGCAAGTTTTCCT 59.961 41.667 0.00 0.00 32.34 3.36
2138 4097 5.242838 CCAAACATACAGGCAAGTTTTCCTA 59.757 40.000 0.00 0.00 32.34 2.94
2139 4098 5.959618 AACATACAGGCAAGTTTTCCTAC 57.040 39.130 0.00 0.00 0.00 3.18
2140 4099 4.980573 ACATACAGGCAAGTTTTCCTACA 58.019 39.130 0.00 0.00 0.00 2.74
2141 4100 5.003804 ACATACAGGCAAGTTTTCCTACAG 58.996 41.667 0.00 0.00 0.00 2.74
2142 4101 3.577805 ACAGGCAAGTTTTCCTACAGT 57.422 42.857 0.00 0.00 0.00 3.55
2143 4102 4.699925 ACAGGCAAGTTTTCCTACAGTA 57.300 40.909 0.00 0.00 0.00 2.74
2144 4103 5.242795 ACAGGCAAGTTTTCCTACAGTAT 57.757 39.130 0.00 0.00 0.00 2.12
2145 4104 5.003804 ACAGGCAAGTTTTCCTACAGTATG 58.996 41.667 0.00 0.00 46.00 2.39
2146 4105 5.221843 ACAGGCAAGTTTTCCTACAGTATGA 60.222 40.000 0.00 0.00 39.69 2.15
2147 4106 5.882557 CAGGCAAGTTTTCCTACAGTATGAT 59.117 40.000 0.00 0.00 39.69 2.45
2148 4107 6.375455 CAGGCAAGTTTTCCTACAGTATGATT 59.625 38.462 0.00 0.00 39.69 2.57
2149 4108 6.375455 AGGCAAGTTTTCCTACAGTATGATTG 59.625 38.462 0.00 0.00 39.69 2.67
2150 4109 6.374333 GGCAAGTTTTCCTACAGTATGATTGA 59.626 38.462 2.70 0.00 39.69 2.57
2151 4110 7.067494 GGCAAGTTTTCCTACAGTATGATTGAT 59.933 37.037 2.70 0.00 39.69 2.57
2152 4111 7.912250 GCAAGTTTTCCTACAGTATGATTGATG 59.088 37.037 2.70 0.00 39.69 3.07
2153 4112 9.166173 CAAGTTTTCCTACAGTATGATTGATGA 57.834 33.333 0.00 0.00 39.69 2.92
2154 4113 8.954950 AGTTTTCCTACAGTATGATTGATGAG 57.045 34.615 0.00 0.00 39.69 2.90
2155 4114 8.762645 AGTTTTCCTACAGTATGATTGATGAGA 58.237 33.333 0.00 0.00 39.69 3.27
2156 4115 9.039870 GTTTTCCTACAGTATGATTGATGAGAG 57.960 37.037 0.00 0.00 39.69 3.20
2157 4116 8.539117 TTTCCTACAGTATGATTGATGAGAGA 57.461 34.615 0.00 0.00 39.69 3.10
2158 4117 8.718158 TTCCTACAGTATGATTGATGAGAGAT 57.282 34.615 0.00 0.00 39.69 2.75
2159 4118 8.718158 TCCTACAGTATGATTGATGAGAGATT 57.282 34.615 0.00 0.00 39.69 2.40
2160 4119 9.813826 TCCTACAGTATGATTGATGAGAGATTA 57.186 33.333 0.00 0.00 39.69 1.75
2161 4120 9.853555 CCTACAGTATGATTGATGAGAGATTAC 57.146 37.037 0.00 0.00 39.69 1.89
2162 4121 9.853555 CTACAGTATGATTGATGAGAGATTACC 57.146 37.037 0.00 0.00 39.69 2.85
2163 4122 7.675062 ACAGTATGATTGATGAGAGATTACCC 58.325 38.462 0.00 0.00 39.69 3.69
2164 4123 7.290948 ACAGTATGATTGATGAGAGATTACCCA 59.709 37.037 0.00 0.00 39.69 4.51
2165 4124 7.601886 CAGTATGATTGATGAGAGATTACCCAC 59.398 40.741 0.00 0.00 39.69 4.61
2166 4125 5.296151 TGATTGATGAGAGATTACCCACC 57.704 43.478 0.00 0.00 0.00 4.61
2167 4126 4.971282 TGATTGATGAGAGATTACCCACCT 59.029 41.667 0.00 0.00 0.00 4.00
2168 4127 6.143206 TGATTGATGAGAGATTACCCACCTA 58.857 40.000 0.00 0.00 0.00 3.08
2169 4128 6.789457 TGATTGATGAGAGATTACCCACCTAT 59.211 38.462 0.00 0.00 0.00 2.57
2170 4129 7.955750 TGATTGATGAGAGATTACCCACCTATA 59.044 37.037 0.00 0.00 0.00 1.31
2171 4130 8.923838 ATTGATGAGAGATTACCCACCTATAT 57.076 34.615 0.00 0.00 0.00 0.86
2174 4133 9.426534 TGATGAGAGATTACCCACCTATATATG 57.573 37.037 0.00 0.00 0.00 1.78
2175 4134 9.427821 GATGAGAGATTACCCACCTATATATGT 57.572 37.037 0.00 0.00 0.00 2.29
2181 4140 9.584008 AGATTACCCACCTATATATGTATACCG 57.416 37.037 0.00 0.00 0.00 4.02
2182 4141 9.359653 GATTACCCACCTATATATGTATACCGT 57.640 37.037 0.00 0.00 0.00 4.83
2183 4142 8.523915 TTACCCACCTATATATGTATACCGTG 57.476 38.462 0.00 5.56 0.00 4.94
2184 4143 6.496743 ACCCACCTATATATGTATACCGTGT 58.503 40.000 0.00 0.00 0.00 4.49
2185 4144 6.379133 ACCCACCTATATATGTATACCGTGTG 59.621 42.308 0.00 0.00 0.00 3.82
2186 4145 6.183360 CCCACCTATATATGTATACCGTGTGG 60.183 46.154 0.00 0.00 42.84 4.17
2202 4161 3.058501 CGTGTGGTTAATTGAACTGACCC 60.059 47.826 0.00 0.00 38.21 4.46
2203 4162 3.254903 GTGTGGTTAATTGAACTGACCCC 59.745 47.826 0.00 0.00 38.21 4.95
2365 4325 6.293244 GGTTTATACCCAGTTACAATCATCGC 60.293 42.308 0.00 0.00 38.60 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 148 6.408869 TGAGCATGAGTCATTCTGTAATTCA 58.591 36.000 10.17 0.00 0.00 2.57
147 149 6.915544 TGAGCATGAGTCATTCTGTAATTC 57.084 37.500 10.17 0.00 0.00 2.17
150 152 5.045872 CGATGAGCATGAGTCATTCTGTAA 58.954 41.667 10.17 0.00 0.00 2.41
164 166 4.012374 AGTGTTGAAAATCCGATGAGCAT 58.988 39.130 0.00 0.00 0.00 3.79
167 169 3.062639 CCGAGTGTTGAAAATCCGATGAG 59.937 47.826 0.00 0.00 0.00 2.90
285 298 2.835895 GTCGGGAGGAGGAGAGGC 60.836 72.222 0.00 0.00 0.00 4.70
288 301 2.691779 GGAGGTCGGGAGGAGGAGA 61.692 68.421 0.00 0.00 0.00 3.71
316 329 1.555075 GGGACAGATAGCCACTTGTCA 59.445 52.381 10.09 0.00 0.00 3.58
422 440 0.544357 ACTTCACCCACGAGATCCCA 60.544 55.000 0.00 0.00 0.00 4.37
535 820 3.751479 TGCATAGTGTCATAATCGGCT 57.249 42.857 0.00 0.00 0.00 5.52
582 867 9.651913 GCCTCAAAATTGTCCTTTTATAATTCA 57.348 29.630 0.00 0.00 0.00 2.57
583 868 8.807581 CGCCTCAAAATTGTCCTTTTATAATTC 58.192 33.333 0.00 0.00 0.00 2.17
584 869 8.311109 ACGCCTCAAAATTGTCCTTTTATAATT 58.689 29.630 0.00 0.00 0.00 1.40
586 871 7.222000 ACGCCTCAAAATTGTCCTTTTATAA 57.778 32.000 0.00 0.00 0.00 0.98
587 872 6.827586 ACGCCTCAAAATTGTCCTTTTATA 57.172 33.333 0.00 0.00 0.00 0.98
591 876 6.349860 GGTTATACGCCTCAAAATTGTCCTTT 60.350 38.462 0.00 0.00 0.00 3.11
597 882 4.609691 ACGGTTATACGCCTCAAAATTG 57.390 40.909 0.00 0.00 37.37 2.32
609 894 8.527567 AATAGAGACTACGACTACGGTTATAC 57.472 38.462 0.00 0.00 44.46 1.47
645 930 8.713971 TCAGATATAGGGTAATTGAACACACAT 58.286 33.333 0.00 0.00 0.00 3.21
646 931 8.084985 TCAGATATAGGGTAATTGAACACACA 57.915 34.615 0.00 0.00 0.00 3.72
713 1003 7.180946 CCCCTTCTCCTTCTATTTCCAATTTTT 59.819 37.037 0.00 0.00 0.00 1.94
741 1032 3.863142 TCTAGTAGCCCACGTTCTTTC 57.137 47.619 0.00 0.00 0.00 2.62
759 2662 1.668419 GTGTGTGAGGCTTGTGTTCT 58.332 50.000 0.00 0.00 0.00 3.01
881 2784 8.073768 CGCCAATATATAAAGACCGATGTTTTT 58.926 33.333 0.00 0.00 33.74 1.94
882 2785 7.227910 ACGCCAATATATAAAGACCGATGTTTT 59.772 33.333 0.00 0.00 0.00 2.43
891 2813 7.376615 AGGACAGTACGCCAATATATAAAGAC 58.623 38.462 5.47 0.00 0.00 3.01
913 2836 5.860182 CGAATTTGTTGTAGTTCGACTAGGA 59.140 40.000 0.49 0.00 44.37 2.94
921 2844 5.319232 TCACGACGAATTTGTTGTAGTTC 57.681 39.130 16.93 0.00 34.69 3.01
1083 3009 1.153901 GACGGGAAGATTGCGTCGA 60.154 57.895 0.00 0.00 0.00 4.20
1084 3010 2.165301 GGACGGGAAGATTGCGTCG 61.165 63.158 0.00 0.00 0.00 5.12
1085 3011 0.391263 AAGGACGGGAAGATTGCGTC 60.391 55.000 0.00 0.00 0.00 5.19
1186 3124 2.505557 GTACGCCGTCCCGAACAG 60.506 66.667 0.00 0.00 0.00 3.16
1210 3148 1.215647 GTGGCAGGTCGTAGGTCAG 59.784 63.158 0.00 0.00 0.00 3.51
1345 3283 3.450115 GTAGCACCTCTCCGCGGT 61.450 66.667 27.15 5.29 34.38 5.68
1471 3409 2.911484 CGTCGTTCCAGTCCCACGA 61.911 63.158 0.00 0.00 40.53 4.35
1555 3496 4.436998 CCGCACCTGGACCTCGAC 62.437 72.222 0.00 0.00 0.00 4.20
1721 3668 7.715265 AGAAGTAGTATTGATTGCATTACCG 57.285 36.000 0.00 0.00 33.46 4.02
1735 3682 7.919151 AGCCAGGTAAAGAAAAGAAGTAGTAT 58.081 34.615 0.00 0.00 0.00 2.12
1738 3685 7.159372 TGTAGCCAGGTAAAGAAAAGAAGTAG 58.841 38.462 0.00 0.00 0.00 2.57
1739 3686 7.069877 TGTAGCCAGGTAAAGAAAAGAAGTA 57.930 36.000 0.00 0.00 0.00 2.24
1740 3687 5.937111 TGTAGCCAGGTAAAGAAAAGAAGT 58.063 37.500 0.00 0.00 0.00 3.01
1741 3688 6.486993 ACTTGTAGCCAGGTAAAGAAAAGAAG 59.513 38.462 0.00 0.00 0.00 2.85
1759 3706 9.703892 AGCTTGCTATCAATCTTATACTTGTAG 57.296 33.333 0.00 0.00 0.00 2.74
1761 3708 8.834465 CAAGCTTGCTATCAATCTTATACTTGT 58.166 33.333 14.65 0.00 36.75 3.16
1762 3709 9.049523 TCAAGCTTGCTATCAATCTTATACTTG 57.950 33.333 21.99 0.00 36.75 3.16
1763 3710 9.790344 ATCAAGCTTGCTATCAATCTTATACTT 57.210 29.630 21.99 0.00 36.75 2.24
1764 3711 9.790344 AATCAAGCTTGCTATCAATCTTATACT 57.210 29.630 21.99 0.00 36.75 2.12
1767 3714 8.921353 AGAATCAAGCTTGCTATCAATCTTAT 57.079 30.769 21.99 2.35 36.75 1.73
1770 3717 7.041235 GCTTAGAATCAAGCTTGCTATCAATCT 60.041 37.037 21.99 13.58 46.04 2.40
1771 3718 7.076983 GCTTAGAATCAAGCTTGCTATCAATC 58.923 38.462 21.99 6.80 46.04 2.67
1772 3719 6.968250 GCTTAGAATCAAGCTTGCTATCAAT 58.032 36.000 21.99 5.91 46.04 2.57
1773 3720 6.369059 GCTTAGAATCAAGCTTGCTATCAA 57.631 37.500 21.99 11.15 46.04 2.57
1774 3721 5.998454 GCTTAGAATCAAGCTTGCTATCA 57.002 39.130 21.99 4.27 46.04 2.15
1792 3751 8.831715 ACATTGATATTATCGTGTCATGCTTA 57.168 30.769 8.08 0.00 0.00 3.09
1807 3766 8.680903 GTCATTTGAGAAGTGGACATTGATATT 58.319 33.333 0.00 0.00 0.00 1.28
1808 3767 7.284034 GGTCATTTGAGAAGTGGACATTGATAT 59.716 37.037 0.00 0.00 0.00 1.63
1820 3779 3.620966 GCTAGGCAGGTCATTTGAGAAGT 60.621 47.826 0.00 0.00 0.00 3.01
1842 3801 3.066342 CCAAACAGATTAGCAGCCTGATG 59.934 47.826 0.00 2.88 0.00 3.07
1843 3802 3.285484 CCAAACAGATTAGCAGCCTGAT 58.715 45.455 0.00 0.00 0.00 2.90
1844 3803 2.618816 CCCAAACAGATTAGCAGCCTGA 60.619 50.000 0.00 0.00 0.00 3.86
1845 3804 1.747355 CCCAAACAGATTAGCAGCCTG 59.253 52.381 0.00 0.00 0.00 4.85
1846 3805 1.355720 ACCCAAACAGATTAGCAGCCT 59.644 47.619 0.00 0.00 0.00 4.58
1847 3806 1.474077 CACCCAAACAGATTAGCAGCC 59.526 52.381 0.00 0.00 0.00 4.85
1848 3807 1.135286 GCACCCAAACAGATTAGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
1849 3808 1.474077 GGCACCCAAACAGATTAGCAG 59.526 52.381 0.00 0.00 0.00 4.24
1850 3809 1.202989 TGGCACCCAAACAGATTAGCA 60.203 47.619 0.00 0.00 0.00 3.49
1851 3810 1.474077 CTGGCACCCAAACAGATTAGC 59.526 52.381 0.00 0.00 34.21 3.09
1852 3811 3.012518 CTCTGGCACCCAAACAGATTAG 58.987 50.000 0.00 0.00 40.16 1.73
1853 3812 2.642311 TCTCTGGCACCCAAACAGATTA 59.358 45.455 0.00 0.00 40.16 1.75
1854 3813 1.425066 TCTCTGGCACCCAAACAGATT 59.575 47.619 0.00 0.00 40.16 2.40
1855 3814 1.067295 TCTCTGGCACCCAAACAGAT 58.933 50.000 0.00 0.00 40.16 2.90
1856 3815 0.843309 TTCTCTGGCACCCAAACAGA 59.157 50.000 0.00 0.00 38.80 3.41
1857 3816 1.691196 TTTCTCTGGCACCCAAACAG 58.309 50.000 0.00 0.00 30.80 3.16
1858 3817 2.151502 TTTTCTCTGGCACCCAAACA 57.848 45.000 0.00 0.00 30.80 2.83
1859 3818 5.170748 CAATATTTTCTCTGGCACCCAAAC 58.829 41.667 0.00 0.00 30.80 2.93
1860 3819 4.222588 CCAATATTTTCTCTGGCACCCAAA 59.777 41.667 0.00 0.00 30.80 3.28
1861 3820 3.768757 CCAATATTTTCTCTGGCACCCAA 59.231 43.478 0.00 0.00 30.80 4.12
1862 3821 3.011144 TCCAATATTTTCTCTGGCACCCA 59.989 43.478 0.00 0.00 0.00 4.51
1863 3822 3.631250 TCCAATATTTTCTCTGGCACCC 58.369 45.455 0.00 0.00 0.00 4.61
1864 3823 4.526970 TCTCCAATATTTTCTCTGGCACC 58.473 43.478 0.00 0.00 0.00 5.01
1865 3824 6.705863 AATCTCCAATATTTTCTCTGGCAC 57.294 37.500 0.00 0.00 0.00 5.01
1866 3825 7.722949 AAAATCTCCAATATTTTCTCTGGCA 57.277 32.000 0.00 0.00 32.43 4.92
1882 3841 9.561270 GCTATGTTTTCAAACTAGAAAATCTCC 57.439 33.333 0.00 0.00 45.86 3.71
1913 3872 6.437162 AGCTGTCATAAGCATAAAGGGAAAAA 59.563 34.615 0.00 0.00 46.08 1.94
1914 3873 5.951747 AGCTGTCATAAGCATAAAGGGAAAA 59.048 36.000 0.00 0.00 46.08 2.29
1915 3874 5.509498 AGCTGTCATAAGCATAAAGGGAAA 58.491 37.500 0.00 0.00 46.08 3.13
1916 3875 5.116084 AGCTGTCATAAGCATAAAGGGAA 57.884 39.130 0.00 0.00 46.08 3.97
1917 3876 4.778213 AGCTGTCATAAGCATAAAGGGA 57.222 40.909 0.00 0.00 46.08 4.20
1918 3877 5.450965 CCAAAGCTGTCATAAGCATAAAGGG 60.451 44.000 0.00 0.00 46.08 3.95
1919 3878 5.357878 TCCAAAGCTGTCATAAGCATAAAGG 59.642 40.000 0.00 0.00 46.08 3.11
1920 3879 6.441093 TCCAAAGCTGTCATAAGCATAAAG 57.559 37.500 0.00 0.00 46.08 1.85
1921 3880 7.408756 AATCCAAAGCTGTCATAAGCATAAA 57.591 32.000 0.00 0.00 46.08 1.40
1922 3881 7.992608 TCTAATCCAAAGCTGTCATAAGCATAA 59.007 33.333 0.00 0.00 46.08 1.90
1923 3882 7.508687 TCTAATCCAAAGCTGTCATAAGCATA 58.491 34.615 0.00 0.00 46.08 3.14
1924 3883 6.359804 TCTAATCCAAAGCTGTCATAAGCAT 58.640 36.000 0.00 0.00 46.08 3.79
1925 3884 5.744171 TCTAATCCAAAGCTGTCATAAGCA 58.256 37.500 0.00 0.00 46.08 3.91
1926 3885 6.683974 TTCTAATCCAAAGCTGTCATAAGC 57.316 37.500 0.00 0.00 43.88 3.09
1930 3889 9.466497 TCTAAATTTCTAATCCAAAGCTGTCAT 57.534 29.630 0.00 0.00 0.00 3.06
1931 3890 8.862325 TCTAAATTTCTAATCCAAAGCTGTCA 57.138 30.769 0.00 0.00 0.00 3.58
1932 3891 9.561270 GTTCTAAATTTCTAATCCAAAGCTGTC 57.439 33.333 0.00 0.00 0.00 3.51
1933 3892 9.077885 TGTTCTAAATTTCTAATCCAAAGCTGT 57.922 29.630 0.00 0.00 0.00 4.40
1934 3893 9.912634 TTGTTCTAAATTTCTAATCCAAAGCTG 57.087 29.630 0.00 0.00 0.00 4.24
1939 3898 8.188139 GCCGATTGTTCTAAATTTCTAATCCAA 58.812 33.333 0.00 0.00 0.00 3.53
1940 3899 7.556275 AGCCGATTGTTCTAAATTTCTAATCCA 59.444 33.333 0.00 0.00 0.00 3.41
1941 3900 7.931275 AGCCGATTGTTCTAAATTTCTAATCC 58.069 34.615 0.00 0.00 0.00 3.01
1942 3901 8.831550 AGAGCCGATTGTTCTAAATTTCTAATC 58.168 33.333 0.00 0.00 32.04 1.75
1943 3902 8.738645 AGAGCCGATTGTTCTAAATTTCTAAT 57.261 30.769 0.00 0.00 32.04 1.73
1944 3903 9.095065 GTAGAGCCGATTGTTCTAAATTTCTAA 57.905 33.333 0.00 0.00 38.35 2.10
1945 3904 8.255206 TGTAGAGCCGATTGTTCTAAATTTCTA 58.745 33.333 0.00 0.00 38.35 2.10
1946 3905 7.103641 TGTAGAGCCGATTGTTCTAAATTTCT 58.896 34.615 0.00 0.00 38.35 2.52
1947 3906 7.303634 TGTAGAGCCGATTGTTCTAAATTTC 57.696 36.000 0.00 0.00 38.35 2.17
1948 3907 7.552687 TCATGTAGAGCCGATTGTTCTAAATTT 59.447 33.333 0.00 0.00 38.35 1.82
1949 3908 7.047891 TCATGTAGAGCCGATTGTTCTAAATT 58.952 34.615 0.00 0.00 38.35 1.82
1950 3909 6.582636 TCATGTAGAGCCGATTGTTCTAAAT 58.417 36.000 0.00 0.00 38.35 1.40
1951 3910 5.972935 TCATGTAGAGCCGATTGTTCTAAA 58.027 37.500 0.00 0.00 38.35 1.85
1952 3911 5.592104 TCATGTAGAGCCGATTGTTCTAA 57.408 39.130 0.00 0.00 38.35 2.10
1953 3912 5.348986 GTTCATGTAGAGCCGATTGTTCTA 58.651 41.667 0.00 0.00 35.89 2.10
1954 3913 4.184629 GTTCATGTAGAGCCGATTGTTCT 58.815 43.478 0.00 0.00 38.24 3.01
1955 3914 3.309954 GGTTCATGTAGAGCCGATTGTTC 59.690 47.826 0.00 0.00 37.90 3.18
1956 3915 3.270877 GGTTCATGTAGAGCCGATTGTT 58.729 45.455 0.00 0.00 37.90 2.83
1957 3916 2.906354 GGTTCATGTAGAGCCGATTGT 58.094 47.619 0.00 0.00 37.90 2.71
1963 3922 1.212935 ACCATGGGTTCATGTAGAGCC 59.787 52.381 18.09 0.27 46.96 4.70
1964 3923 2.565841 GACCATGGGTTCATGTAGAGC 58.434 52.381 18.09 0.00 46.96 4.09
1965 3924 2.774234 AGGACCATGGGTTCATGTAGAG 59.226 50.000 18.09 0.00 46.96 2.43
1966 3925 2.845659 AGGACCATGGGTTCATGTAGA 58.154 47.619 18.09 0.00 46.96 2.59
1967 3926 3.652057 AAGGACCATGGGTTCATGTAG 57.348 47.619 18.09 0.00 46.96 2.74
1968 3927 5.072600 GGTATAAGGACCATGGGTTCATGTA 59.927 44.000 18.09 0.00 46.96 2.29
1969 3928 4.141251 GGTATAAGGACCATGGGTTCATGT 60.141 45.833 18.09 0.00 46.96 3.21
1971 3930 4.315993 AGGTATAAGGACCATGGGTTCAT 58.684 43.478 18.09 0.00 42.47 2.57
1972 3931 3.714798 GAGGTATAAGGACCATGGGTTCA 59.285 47.826 18.09 0.00 42.47 3.18
1973 3932 3.244112 CGAGGTATAAGGACCATGGGTTC 60.244 52.174 18.09 5.13 42.47 3.62
1974 3933 2.704065 CGAGGTATAAGGACCATGGGTT 59.296 50.000 18.09 9.03 42.47 4.11
1975 3934 2.090943 TCGAGGTATAAGGACCATGGGT 60.091 50.000 18.09 0.99 42.47 4.51
1976 3935 2.299297 GTCGAGGTATAAGGACCATGGG 59.701 54.545 18.09 0.00 42.47 4.00
1977 3936 2.963101 TGTCGAGGTATAAGGACCATGG 59.037 50.000 11.19 11.19 42.47 3.66
1978 3937 3.889538 TCTGTCGAGGTATAAGGACCATG 59.110 47.826 0.00 0.00 42.47 3.66
1979 3938 4.141228 TCTCTGTCGAGGTATAAGGACCAT 60.141 45.833 0.00 0.00 42.47 3.55
1980 3939 3.201487 TCTCTGTCGAGGTATAAGGACCA 59.799 47.826 0.00 0.00 42.47 4.02
1981 3940 3.818180 TCTCTGTCGAGGTATAAGGACC 58.182 50.000 0.00 0.00 40.08 4.46
1982 3941 5.124645 TCTTCTCTGTCGAGGTATAAGGAC 58.875 45.833 0.00 0.00 37.86 3.85
1983 3942 5.130643 TCTCTTCTCTGTCGAGGTATAAGGA 59.869 44.000 0.00 0.00 37.86 3.36
1984 3943 5.369833 TCTCTTCTCTGTCGAGGTATAAGG 58.630 45.833 0.00 0.00 37.86 2.69
1985 3944 6.148811 GGATCTCTTCTCTGTCGAGGTATAAG 59.851 46.154 0.00 0.00 37.86 1.73
1986 3945 5.998981 GGATCTCTTCTCTGTCGAGGTATAA 59.001 44.000 0.00 0.00 37.86 0.98
1987 3946 5.308497 AGGATCTCTTCTCTGTCGAGGTATA 59.692 44.000 0.00 0.00 37.86 1.47
1988 3947 4.104102 AGGATCTCTTCTCTGTCGAGGTAT 59.896 45.833 0.00 0.00 37.86 2.73
1989 3948 3.456644 AGGATCTCTTCTCTGTCGAGGTA 59.543 47.826 0.00 0.00 37.86 3.08
1990 3949 2.241176 AGGATCTCTTCTCTGTCGAGGT 59.759 50.000 0.00 0.00 37.86 3.85
1991 3950 2.930950 AGGATCTCTTCTCTGTCGAGG 58.069 52.381 0.00 0.00 37.86 4.63
1992 3951 4.552166 GAAGGATCTCTTCTCTGTCGAG 57.448 50.000 13.60 0.00 46.30 4.04
2007 3966 9.336171 GCATGTATTCTTTCTTCTTAGAAGGAT 57.664 33.333 20.29 10.20 43.47 3.24
2008 3967 8.543774 AGCATGTATTCTTTCTTCTTAGAAGGA 58.456 33.333 20.29 10.53 42.66 3.36
2009 3968 8.729805 AGCATGTATTCTTTCTTCTTAGAAGG 57.270 34.615 20.29 6.30 41.25 3.46
2011 3970 9.319143 GCTAGCATGTATTCTTTCTTCTTAGAA 57.681 33.333 10.63 0.00 38.61 2.10
2012 3971 8.700051 AGCTAGCATGTATTCTTTCTTCTTAGA 58.300 33.333 18.83 0.00 0.00 2.10
2013 3972 8.885494 AGCTAGCATGTATTCTTTCTTCTTAG 57.115 34.615 18.83 0.00 0.00 2.18
2014 3973 9.751542 GTAGCTAGCATGTATTCTTTCTTCTTA 57.248 33.333 18.83 0.00 0.00 2.10
2015 3974 7.713073 GGTAGCTAGCATGTATTCTTTCTTCTT 59.287 37.037 18.83 0.00 0.00 2.52
2016 3975 7.070571 AGGTAGCTAGCATGTATTCTTTCTTCT 59.929 37.037 24.01 0.00 0.00 2.85
2017 3976 7.170658 CAGGTAGCTAGCATGTATTCTTTCTTC 59.829 40.741 24.01 0.00 0.00 2.87
2018 3977 6.989169 CAGGTAGCTAGCATGTATTCTTTCTT 59.011 38.462 24.01 0.00 0.00 2.52
2019 3978 6.520272 CAGGTAGCTAGCATGTATTCTTTCT 58.480 40.000 24.01 0.00 0.00 2.52
2020 3979 5.178438 GCAGGTAGCTAGCATGTATTCTTTC 59.822 44.000 24.01 2.38 41.15 2.62
2021 3980 5.059833 GCAGGTAGCTAGCATGTATTCTTT 58.940 41.667 24.01 0.00 41.15 2.52
2022 3981 4.636249 GCAGGTAGCTAGCATGTATTCTT 58.364 43.478 24.01 0.00 41.15 2.52
2023 3982 3.305676 CGCAGGTAGCTAGCATGTATTCT 60.306 47.826 24.01 1.41 42.61 2.40
2024 3983 2.989840 CGCAGGTAGCTAGCATGTATTC 59.010 50.000 24.01 6.67 42.61 1.75
2025 3984 3.032017 CGCAGGTAGCTAGCATGTATT 57.968 47.619 24.01 0.00 42.61 1.89
2026 3985 2.732412 CGCAGGTAGCTAGCATGTAT 57.268 50.000 24.01 0.61 42.61 2.29
2041 4000 1.462283 CGAATGCATAATCTCCCGCAG 59.538 52.381 0.00 0.00 37.88 5.18
2042 4001 1.202639 ACGAATGCATAATCTCCCGCA 60.203 47.619 0.00 0.00 39.01 5.69
2043 4002 1.512926 ACGAATGCATAATCTCCCGC 58.487 50.000 0.00 0.00 0.00 6.13
2044 4003 3.547868 CGATACGAATGCATAATCTCCCG 59.452 47.826 0.00 0.00 0.00 5.14
2045 4004 4.563184 GTCGATACGAATGCATAATCTCCC 59.437 45.833 0.00 0.00 37.72 4.30
2046 4005 5.688348 GTCGATACGAATGCATAATCTCC 57.312 43.478 0.00 0.00 37.72 3.71
2061 4020 4.715520 ACAAATGCATGATCGTCGATAC 57.284 40.909 7.93 2.94 0.00 2.24
2062 4021 6.478673 AGTTTACAAATGCATGATCGTCGATA 59.521 34.615 7.93 0.00 0.00 2.92
2063 4022 5.294306 AGTTTACAAATGCATGATCGTCGAT 59.706 36.000 7.63 7.63 0.00 3.59
2064 4023 4.629634 AGTTTACAAATGCATGATCGTCGA 59.370 37.500 0.00 0.00 0.00 4.20
2065 4024 4.897224 AGTTTACAAATGCATGATCGTCG 58.103 39.130 0.00 0.00 0.00 5.12
2066 4025 7.044706 GCTAAAGTTTACAAATGCATGATCGTC 60.045 37.037 0.00 0.00 0.00 4.20
2067 4026 6.747280 GCTAAAGTTTACAAATGCATGATCGT 59.253 34.615 0.00 0.00 0.00 3.73
2068 4027 6.746822 TGCTAAAGTTTACAAATGCATGATCG 59.253 34.615 0.00 0.00 0.00 3.69
2069 4028 7.009540 GGTGCTAAAGTTTACAAATGCATGATC 59.990 37.037 0.00 0.00 0.00 2.92
2070 4029 6.813152 GGTGCTAAAGTTTACAAATGCATGAT 59.187 34.615 0.00 0.00 0.00 2.45
2071 4030 6.015519 AGGTGCTAAAGTTTACAAATGCATGA 60.016 34.615 0.00 0.00 0.00 3.07
2072 4031 6.089820 CAGGTGCTAAAGTTTACAAATGCATG 59.910 38.462 0.00 0.00 0.00 4.06
2073 4032 6.158598 CAGGTGCTAAAGTTTACAAATGCAT 58.841 36.000 9.04 0.00 0.00 3.96
2074 4033 5.527951 CAGGTGCTAAAGTTTACAAATGCA 58.472 37.500 0.00 0.00 0.00 3.96
2075 4034 4.385748 GCAGGTGCTAAAGTTTACAAATGC 59.614 41.667 13.59 13.59 38.21 3.56
2076 4035 5.527951 TGCAGGTGCTAAAGTTTACAAATG 58.472 37.500 3.18 0.72 42.66 2.32
2077 4036 5.534654 TCTGCAGGTGCTAAAGTTTACAAAT 59.465 36.000 15.13 0.00 42.66 2.32
2078 4037 4.884744 TCTGCAGGTGCTAAAGTTTACAAA 59.115 37.500 15.13 0.00 42.66 2.83
2079 4038 4.456535 TCTGCAGGTGCTAAAGTTTACAA 58.543 39.130 15.13 0.00 42.66 2.41
2080 4039 4.079980 TCTGCAGGTGCTAAAGTTTACA 57.920 40.909 15.13 0.00 42.66 2.41
2081 4040 4.515567 AGTTCTGCAGGTGCTAAAGTTTAC 59.484 41.667 15.13 0.00 42.66 2.01
2082 4041 4.515191 CAGTTCTGCAGGTGCTAAAGTTTA 59.485 41.667 15.13 0.00 42.66 2.01
2083 4042 3.316308 CAGTTCTGCAGGTGCTAAAGTTT 59.684 43.478 15.13 0.00 42.66 2.66
2084 4043 2.880890 CAGTTCTGCAGGTGCTAAAGTT 59.119 45.455 15.13 0.00 42.66 2.66
2085 4044 2.498167 CAGTTCTGCAGGTGCTAAAGT 58.502 47.619 15.13 0.00 42.66 2.66
2086 4045 1.198637 GCAGTTCTGCAGGTGCTAAAG 59.801 52.381 22.04 5.72 42.66 1.85
2087 4046 1.238439 GCAGTTCTGCAGGTGCTAAA 58.762 50.000 22.04 4.59 42.66 1.85
2088 4047 0.108396 TGCAGTTCTGCAGGTGCTAA 59.892 50.000 26.43 12.63 40.23 3.09
2089 4048 1.754107 TGCAGTTCTGCAGGTGCTA 59.246 52.632 26.43 15.90 40.23 3.49
2090 4049 2.512397 TGCAGTTCTGCAGGTGCT 59.488 55.556 26.43 15.52 40.23 4.40
2097 4056 1.167851 TGGTAAGCATGCAGTTCTGC 58.832 50.000 21.98 16.65 38.69 4.26
2098 4057 3.004629 TGTTTGGTAAGCATGCAGTTCTG 59.995 43.478 21.98 0.00 0.00 3.02
2099 4058 3.221771 TGTTTGGTAAGCATGCAGTTCT 58.778 40.909 21.98 0.00 0.00 3.01
2100 4059 3.641437 TGTTTGGTAAGCATGCAGTTC 57.359 42.857 21.98 7.30 0.00 3.01
2101 4060 4.522405 TGTATGTTTGGTAAGCATGCAGTT 59.478 37.500 21.98 9.05 32.04 3.16
2102 4061 4.078537 TGTATGTTTGGTAAGCATGCAGT 58.921 39.130 21.98 9.94 32.04 4.40
2103 4062 4.439153 CCTGTATGTTTGGTAAGCATGCAG 60.439 45.833 21.98 20.79 45.95 4.41
2104 4063 3.443329 CCTGTATGTTTGGTAAGCATGCA 59.557 43.478 21.98 0.00 34.87 3.96
2105 4064 3.734902 GCCTGTATGTTTGGTAAGCATGC 60.735 47.826 10.51 10.51 0.00 4.06
2106 4065 3.443329 TGCCTGTATGTTTGGTAAGCATG 59.557 43.478 1.83 0.00 0.00 4.06
2107 4066 3.696045 TGCCTGTATGTTTGGTAAGCAT 58.304 40.909 0.00 0.00 0.00 3.79
2108 4067 3.147553 TGCCTGTATGTTTGGTAAGCA 57.852 42.857 0.00 0.00 0.00 3.91
2109 4068 3.506067 ACTTGCCTGTATGTTTGGTAAGC 59.494 43.478 8.56 0.00 43.94 3.09
2110 4069 5.705609 AACTTGCCTGTATGTTTGGTAAG 57.294 39.130 7.37 7.37 45.04 2.34
2111 4070 6.461788 GGAAAACTTGCCTGTATGTTTGGTAA 60.462 38.462 0.00 0.00 33.61 2.85
2112 4071 5.010213 GGAAAACTTGCCTGTATGTTTGGTA 59.990 40.000 0.00 0.00 33.61 3.25
2113 4072 4.202212 GGAAAACTTGCCTGTATGTTTGGT 60.202 41.667 0.00 0.00 33.61 3.67
2114 4073 4.039124 AGGAAAACTTGCCTGTATGTTTGG 59.961 41.667 0.00 0.00 33.61 3.28
2115 4074 5.200368 AGGAAAACTTGCCTGTATGTTTG 57.800 39.130 0.00 0.00 33.61 2.93
2116 4075 5.830991 TGTAGGAAAACTTGCCTGTATGTTT 59.169 36.000 0.00 0.00 35.73 2.83
2117 4076 5.381757 TGTAGGAAAACTTGCCTGTATGTT 58.618 37.500 0.00 0.00 35.73 2.71
2118 4077 4.980573 TGTAGGAAAACTTGCCTGTATGT 58.019 39.130 0.00 0.00 35.73 2.29
2119 4078 5.003804 ACTGTAGGAAAACTTGCCTGTATG 58.996 41.667 0.00 0.00 35.73 2.39
2120 4079 5.242795 ACTGTAGGAAAACTTGCCTGTAT 57.757 39.130 0.00 0.00 35.73 2.29
2121 4080 4.699925 ACTGTAGGAAAACTTGCCTGTA 57.300 40.909 0.00 0.00 35.73 2.74
2122 4081 3.577805 ACTGTAGGAAAACTTGCCTGT 57.422 42.857 0.00 0.00 35.73 4.00
2123 4082 5.245531 TCATACTGTAGGAAAACTTGCCTG 58.754 41.667 0.00 0.00 35.73 4.85
2124 4083 5.499004 TCATACTGTAGGAAAACTTGCCT 57.501 39.130 0.00 0.00 38.31 4.75
2125 4084 6.374333 TCAATCATACTGTAGGAAAACTTGCC 59.626 38.462 6.25 0.00 0.00 4.52
2126 4085 7.377766 TCAATCATACTGTAGGAAAACTTGC 57.622 36.000 6.25 0.00 0.00 4.01
2127 4086 9.166173 TCATCAATCATACTGTAGGAAAACTTG 57.834 33.333 6.25 6.72 0.00 3.16
2128 4087 9.388506 CTCATCAATCATACTGTAGGAAAACTT 57.611 33.333 6.25 0.00 0.00 2.66
2129 4088 8.762645 TCTCATCAATCATACTGTAGGAAAACT 58.237 33.333 6.25 0.00 0.00 2.66
2130 4089 8.948631 TCTCATCAATCATACTGTAGGAAAAC 57.051 34.615 6.25 0.00 0.00 2.43
2131 4090 8.981659 TCTCTCATCAATCATACTGTAGGAAAA 58.018 33.333 6.25 0.00 0.00 2.29
2132 4091 8.539117 TCTCTCATCAATCATACTGTAGGAAA 57.461 34.615 6.25 0.00 0.00 3.13
2133 4092 8.718158 ATCTCTCATCAATCATACTGTAGGAA 57.282 34.615 6.25 0.00 0.00 3.36
2134 4093 8.718158 AATCTCTCATCAATCATACTGTAGGA 57.282 34.615 4.51 4.51 0.00 2.94
2135 4094 9.853555 GTAATCTCTCATCAATCATACTGTAGG 57.146 37.037 0.00 0.00 0.00 3.18
2136 4095 9.853555 GGTAATCTCTCATCAATCATACTGTAG 57.146 37.037 0.00 0.00 0.00 2.74
2137 4096 8.807118 GGGTAATCTCTCATCAATCATACTGTA 58.193 37.037 0.00 0.00 0.00 2.74
2138 4097 7.290948 TGGGTAATCTCTCATCAATCATACTGT 59.709 37.037 0.00 0.00 0.00 3.55
2139 4098 7.601886 GTGGGTAATCTCTCATCAATCATACTG 59.398 40.741 0.00 0.00 0.00 2.74
2140 4099 7.256475 GGTGGGTAATCTCTCATCAATCATACT 60.256 40.741 0.00 0.00 0.00 2.12
2141 4100 6.876257 GGTGGGTAATCTCTCATCAATCATAC 59.124 42.308 0.00 0.00 0.00 2.39
2142 4101 6.789457 AGGTGGGTAATCTCTCATCAATCATA 59.211 38.462 0.00 0.00 0.00 2.15
2143 4102 5.610132 AGGTGGGTAATCTCTCATCAATCAT 59.390 40.000 0.00 0.00 0.00 2.45
2144 4103 4.971282 AGGTGGGTAATCTCTCATCAATCA 59.029 41.667 0.00 0.00 0.00 2.57
2145 4104 5.559148 AGGTGGGTAATCTCTCATCAATC 57.441 43.478 0.00 0.00 0.00 2.67
2146 4105 8.923838 ATATAGGTGGGTAATCTCTCATCAAT 57.076 34.615 0.00 0.00 0.00 2.57
2148 4107 9.426534 CATATATAGGTGGGTAATCTCTCATCA 57.573 37.037 0.00 0.00 0.00 3.07
2149 4108 9.427821 ACATATATAGGTGGGTAATCTCTCATC 57.572 37.037 0.00 0.00 0.00 2.92
2155 4114 9.584008 CGGTATACATATATAGGTGGGTAATCT 57.416 37.037 10.24 0.00 0.00 2.40
2156 4115 9.359653 ACGGTATACATATATAGGTGGGTAATC 57.640 37.037 10.24 0.00 0.00 1.75
2157 4116 9.139734 CACGGTATACATATATAGGTGGGTAAT 57.860 37.037 10.24 0.00 31.34 1.89
2158 4117 8.115384 ACACGGTATACATATATAGGTGGGTAA 58.885 37.037 10.24 0.00 35.30 2.85
2159 4118 7.557358 CACACGGTATACATATATAGGTGGGTA 59.443 40.741 10.24 0.00 35.30 3.69
2160 4119 6.379133 CACACGGTATACATATATAGGTGGGT 59.621 42.308 10.24 0.00 35.30 4.51
2161 4120 6.183360 CCACACGGTATACATATATAGGTGGG 60.183 46.154 10.24 0.00 35.30 4.61
2162 4121 6.379133 ACCACACGGTATACATATATAGGTGG 59.621 42.308 10.24 11.68 46.71 4.61
2163 4122 7.400599 ACCACACGGTATACATATATAGGTG 57.599 40.000 10.24 0.00 46.71 4.00
2179 4138 3.058501 GGTCAGTTCAATTAACCACACGG 60.059 47.826 0.00 0.00 39.03 4.94
2180 4139 3.058501 GGGTCAGTTCAATTAACCACACG 60.059 47.826 0.00 0.00 39.03 4.49
2181 4140 3.254903 GGGGTCAGTTCAATTAACCACAC 59.745 47.826 0.00 0.00 39.03 3.82
2182 4141 3.492337 GGGGTCAGTTCAATTAACCACA 58.508 45.455 0.00 0.00 39.03 4.17
2183 4142 2.823747 GGGGGTCAGTTCAATTAACCAC 59.176 50.000 0.00 0.00 39.03 4.16
2184 4143 2.719705 AGGGGGTCAGTTCAATTAACCA 59.280 45.455 0.00 0.00 39.03 3.67
2185 4144 3.089284 CAGGGGGTCAGTTCAATTAACC 58.911 50.000 0.00 0.00 39.03 2.85
2186 4145 3.756963 GACAGGGGGTCAGTTCAATTAAC 59.243 47.826 0.00 0.00 46.19 2.01
2187 4146 4.028993 GACAGGGGGTCAGTTCAATTAA 57.971 45.455 0.00 0.00 46.19 1.40
2188 4147 3.713826 GACAGGGGGTCAGTTCAATTA 57.286 47.619 0.00 0.00 46.19 1.40
2189 4148 2.586648 GACAGGGGGTCAGTTCAATT 57.413 50.000 0.00 0.00 46.19 2.32
2238 4197 3.580731 TGAATTCGCATCGTTGAGTGTA 58.419 40.909 0.04 0.00 0.00 2.90
2365 4325 1.472376 GCTCCTTCTCCATTCTGGACG 60.472 57.143 0.00 0.00 42.67 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.