Multiple sequence alignment - TraesCS3D01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G249500 chr3D 100.000 4479 0 0 1 4479 349645158 349640680 0.000000e+00 8272.0
1 TraesCS3D01G249500 chr3D 74.948 966 198 36 2311 3257 480969241 480970181 1.940000e-108 403.0
2 TraesCS3D01G249500 chr3D 79.221 308 54 8 5 306 419823691 419823388 5.870000e-49 206.0
3 TraesCS3D01G249500 chr3D 78.896 308 55 8 5 306 419834823 419834520 2.730000e-47 200.0
4 TraesCS3D01G249500 chr3D 78.896 308 54 9 5 306 419833261 419832959 9.830000e-47 198.0
5 TraesCS3D01G249500 chr3D 86.667 75 6 4 4351 4421 167037047 167036973 3.710000e-11 80.5
6 TraesCS3D01G249500 chr3A 91.087 3164 132 44 384 3476 467880310 467877226 0.000000e+00 4143.0
7 TraesCS3D01G249500 chr3A 75.026 965 199 35 2311 3257 623776831 623777771 4.170000e-110 409.0
8 TraesCS3D01G249500 chr3A 87.889 289 32 3 3962 4249 467875388 467875102 2.000000e-88 337.0
9 TraesCS3D01G249500 chr3A 98.113 53 0 1 3620 3671 467876977 467876925 1.720000e-14 91.6
10 TraesCS3D01G249500 chr3B 89.985 2626 137 50 1356 3914 448578840 448576274 0.000000e+00 3277.0
11 TraesCS3D01G249500 chr3B 82.731 886 78 36 391 1236 448579974 448579124 0.000000e+00 719.0
12 TraesCS3D01G249500 chr3B 90.506 316 28 2 1 315 448580331 448580017 2.490000e-112 416.0
13 TraesCS3D01G249500 chr3B 74.922 961 207 29 2311 3257 641804498 641805438 4.170000e-110 409.0
14 TraesCS3D01G249500 chr3B 86.486 74 5 3 4352 4421 505266322 505266250 4.800000e-10 76.8
15 TraesCS3D01G249500 chr2A 87.071 990 123 4 2303 3291 507388953 507389938 0.000000e+00 1114.0
16 TraesCS3D01G249500 chr2A 80.287 279 51 2 1 276 673026130 673026407 1.630000e-49 207.0
17 TraesCS3D01G249500 chr2A 85.135 74 7 3 4352 4421 1954528 1954601 6.210000e-09 73.1
18 TraesCS3D01G249500 chr2B 86.647 996 129 3 2296 3291 445176455 445177446 0.000000e+00 1099.0
19 TraesCS3D01G249500 chr2B 90.123 81 5 2 4263 4342 10772960 10772882 7.930000e-18 102.0
20 TraesCS3D01G249500 chr2B 100.000 30 0 0 4419 4448 26565742 26565713 6.260000e-04 56.5
21 TraesCS3D01G249500 chr2B 96.774 31 1 0 4421 4451 597252947 597252917 8.000000e-03 52.8
22 TraesCS3D01G249500 chr2D 86.446 996 131 3 2296 3291 375032180 375033171 0.000000e+00 1088.0
23 TraesCS3D01G249500 chr2D 80.797 276 48 4 5 276 619468165 619468439 1.260000e-50 211.0
24 TraesCS3D01G249500 chr2D 100.000 33 0 0 4421 4453 98269050 98269018 1.350000e-05 62.1
25 TraesCS3D01G249500 chr2D 100.000 30 0 0 4420 4449 646351803 646351832 6.260000e-04 56.5
26 TraesCS3D01G249500 chr2D 100.000 28 0 0 4424 4451 625585112 625585139 8.000000e-03 52.8
27 TraesCS3D01G249500 chr6A 87.760 384 34 10 3543 3914 106502574 106502192 1.910000e-118 436.0
28 TraesCS3D01G249500 chr6A 100.000 30 0 0 4421 4450 228519177 228519206 6.260000e-04 56.5
29 TraesCS3D01G249500 chr7B 83.333 276 39 6 5 276 334303042 334302770 9.620000e-62 248.0
30 TraesCS3D01G249500 chr7B 84.536 97 13 2 4260 4356 104003186 104003092 1.330000e-15 95.3
31 TraesCS3D01G249500 chr6B 83.026 271 41 4 5 271 632431873 632431604 1.610000e-59 241.0
32 TraesCS3D01G249500 chr6B 87.879 99 8 3 4258 4354 64000114 64000210 3.660000e-21 113.0
33 TraesCS3D01G249500 chrUn 80.144 277 47 6 5 276 341973956 341974229 2.730000e-47 200.0
34 TraesCS3D01G249500 chr6D 87.234 94 9 2 4264 4356 21668333 21668242 2.200000e-18 104.0
35 TraesCS3D01G249500 chr6D 100.000 31 0 0 4421 4451 156761466 156761496 1.740000e-04 58.4
36 TraesCS3D01G249500 chr1D 87.097 93 11 1 4263 4355 299275360 299275269 2.200000e-18 104.0
37 TraesCS3D01G249500 chr1D 87.838 74 5 3 4352 4421 93124877 93124804 2.870000e-12 84.2
38 TraesCS3D01G249500 chr1D 85.333 75 5 5 4352 4421 444854262 444854189 6.210000e-09 73.1
39 TraesCS3D01G249500 chr5D 86.316 95 10 3 4257 4350 474749192 474749284 2.850000e-17 100.0
40 TraesCS3D01G249500 chr5D 83.516 91 14 1 4263 4353 400411827 400411916 2.870000e-12 84.2
41 TraesCS3D01G249500 chr4B 86.957 92 9 3 4259 4350 15600047 15599959 2.850000e-17 100.0
42 TraesCS3D01G249500 chr4B 82.105 95 12 4 4263 4356 24662758 24662848 4.800000e-10 76.8
43 TraesCS3D01G249500 chr4B 100.000 30 0 0 4419 4448 340651690 340651661 6.260000e-04 56.5
44 TraesCS3D01G249500 chr7A 83.505 97 9 6 4355 4449 42306430 42306339 2.870000e-12 84.2
45 TraesCS3D01G249500 chr7D 87.143 70 5 2 4352 4421 177987448 177987513 4.800000e-10 76.8
46 TraesCS3D01G249500 chr5A 85.333 75 7 2 4351 4421 184466761 184466835 1.730000e-09 75.0
47 TraesCS3D01G249500 chr1B 86.111 72 4 4 4352 4421 392878988 392878921 6.210000e-09 73.1
48 TraesCS3D01G249500 chr1A 83.333 78 3 6 4351 4421 52458329 52458255 3.740000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G249500 chr3D 349640680 349645158 4478 True 8272.000000 8272 100.000000 1 4479 1 chr3D.!!$R2 4478
1 TraesCS3D01G249500 chr3D 480969241 480970181 940 False 403.000000 403 74.948000 2311 3257 1 chr3D.!!$F1 946
2 TraesCS3D01G249500 chr3A 467875102 467880310 5208 True 1523.866667 4143 92.363000 384 4249 3 chr3A.!!$R1 3865
3 TraesCS3D01G249500 chr3A 623776831 623777771 940 False 409.000000 409 75.026000 2311 3257 1 chr3A.!!$F1 946
4 TraesCS3D01G249500 chr3B 448576274 448580331 4057 True 1470.666667 3277 87.740667 1 3914 3 chr3B.!!$R2 3913
5 TraesCS3D01G249500 chr3B 641804498 641805438 940 False 409.000000 409 74.922000 2311 3257 1 chr3B.!!$F1 946
6 TraesCS3D01G249500 chr2A 507388953 507389938 985 False 1114.000000 1114 87.071000 2303 3291 1 chr2A.!!$F2 988
7 TraesCS3D01G249500 chr2B 445176455 445177446 991 False 1099.000000 1099 86.647000 2296 3291 1 chr2B.!!$F1 995
8 TraesCS3D01G249500 chr2D 375032180 375033171 991 False 1088.000000 1088 86.446000 2296 3291 1 chr2D.!!$F1 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 697 0.108804 CTTCTTACGCTCGGCTTCCA 60.109 55.0 0.0 0.0 0.00 3.53 F
1135 1194 0.532862 CGCTGCCAACCCCAGTATAG 60.533 60.0 0.0 0.0 32.93 1.31 F
1932 2194 0.035439 ATTGGTAGGGTTCAGCCACG 60.035 55.0 0.0 0.0 39.65 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 2058 0.804364 CCAAGTTGCGAGCATGCTAA 59.196 50.0 22.74 8.96 35.36 3.09 R
2088 2355 0.882927 TTGTGTAGCCAGCACGAACC 60.883 55.0 0.00 0.00 39.53 3.62 R
3489 3768 0.094216 CTCTGTTCAATCACAGCGCG 59.906 55.0 0.00 0.00 43.51 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.940994 TGGGAAAGACAAACGGATCA 57.059 45.000 0.00 0.00 0.00 2.92
57 58 1.468914 GGGAAAGACAAACGGATCAGC 59.531 52.381 0.00 0.00 0.00 4.26
59 60 2.814336 GGAAAGACAAACGGATCAGCTT 59.186 45.455 0.00 0.00 0.00 3.74
60 61 3.365364 GGAAAGACAAACGGATCAGCTTG 60.365 47.826 7.35 7.35 0.00 4.01
63 64 0.110486 ACAAACGGATCAGCTTGGGT 59.890 50.000 12.58 0.00 0.00 4.51
69 70 2.361610 ATCAGCTTGGGTTGGCCG 60.362 61.111 0.00 0.00 34.97 6.13
73 74 4.966787 GCTTGGGTTGGCCGTGGA 62.967 66.667 0.00 0.00 34.97 4.02
99 100 1.134907 GTAGTGTATCCGTGTGGTGGG 60.135 57.143 0.00 0.00 36.30 4.61
105 106 3.238497 CCGTGTGGTGGGAGTGGA 61.238 66.667 0.00 0.00 0.00 4.02
108 109 3.249189 TGTGGTGGGAGTGGAGGC 61.249 66.667 0.00 0.00 0.00 4.70
139 140 7.460296 CAATCGTACATGCACATAGTTTTACA 58.540 34.615 0.00 0.00 0.00 2.41
180 181 6.574350 TGTCCAAAATGTAACCGTTTTCATT 58.426 32.000 7.90 7.90 37.62 2.57
206 207 7.704899 TCGATTTGTATGAACTACGTCATGATT 59.295 33.333 0.00 0.00 38.69 2.57
214 215 7.905604 TGAACTACGTCATGATTTGAAATCT 57.094 32.000 17.76 2.39 35.70 2.40
229 230 3.831333 TGAAATCTGGGCTTGTTTGCATA 59.169 39.130 0.00 0.00 34.04 3.14
236 237 3.993081 TGGGCTTGTTTGCATAAATTTCG 59.007 39.130 0.00 0.00 34.04 3.46
251 252 5.942325 AAATTTCGTTCGGTTTGTTGAAG 57.058 34.783 0.00 0.00 0.00 3.02
260 261 6.853872 CGTTCGGTTTGTTGAAGATGAATTTA 59.146 34.615 0.00 0.00 0.00 1.40
266 267 9.597999 GGTTTGTTGAAGATGAATTTAAAATGC 57.402 29.630 0.00 0.00 0.00 3.56
279 280 1.994916 AAAATGCATGCGGCTACAAC 58.005 45.000 14.09 0.00 45.15 3.32
282 283 1.378882 ATGCATGCGGCTACAACTGG 61.379 55.000 14.09 0.00 45.15 4.00
290 291 1.370064 GCTACAACTGGACGGTGGT 59.630 57.895 0.00 0.00 0.00 4.16
291 292 0.250166 GCTACAACTGGACGGTGGTT 60.250 55.000 0.00 0.00 0.00 3.67
315 316 2.957576 GCATCAATGTATGCGGAGTC 57.042 50.000 0.00 0.00 42.57 3.36
316 317 1.532868 GCATCAATGTATGCGGAGTCC 59.467 52.381 0.00 0.00 42.57 3.85
317 318 2.837498 CATCAATGTATGCGGAGTCCA 58.163 47.619 10.49 0.00 0.00 4.02
319 320 0.930310 CAATGTATGCGGAGTCCACG 59.070 55.000 10.49 0.00 0.00 4.94
320 321 0.179084 AATGTATGCGGAGTCCACGG 60.179 55.000 10.49 0.00 0.00 4.94
321 322 1.040893 ATGTATGCGGAGTCCACGGA 61.041 55.000 10.49 0.00 35.80 4.69
322 323 1.226888 GTATGCGGAGTCCACGGAC 60.227 63.158 10.49 8.23 44.86 4.79
330 331 4.937781 GTCCACGGACGGATATCG 57.062 61.111 0.00 0.00 45.88 2.92
331 332 2.324215 GTCCACGGACGGATATCGA 58.676 57.895 0.00 0.00 42.43 3.59
344 345 6.649557 GGACGGATATCGAAGGAAATTTACAT 59.350 38.462 2.58 0.00 42.43 2.29
347 348 8.145767 ACGGATATCGAAGGAAATTTACATGTA 58.854 33.333 0.08 0.08 42.43 2.29
349 350 9.706691 GGATATCGAAGGAAATTTACATGTAGA 57.293 33.333 5.56 1.61 0.00 2.59
352 353 7.246674 TCGAAGGAAATTTACATGTAGATGC 57.753 36.000 9.49 5.56 32.14 3.91
353 354 6.260050 TCGAAGGAAATTTACATGTAGATGCC 59.740 38.462 9.49 13.03 32.14 4.40
354 355 6.513393 CGAAGGAAATTTACATGTAGATGCCC 60.513 42.308 17.82 16.18 32.14 5.36
355 356 6.018433 AGGAAATTTACATGTAGATGCCCT 57.982 37.500 17.24 17.24 32.14 5.19
357 358 7.582719 AGGAAATTTACATGTAGATGCCCTTA 58.417 34.615 17.24 0.00 32.14 2.69
358 359 7.721399 AGGAAATTTACATGTAGATGCCCTTAG 59.279 37.037 17.24 0.00 32.14 2.18
359 360 7.502561 GGAAATTTACATGTAGATGCCCTTAGT 59.497 37.037 9.49 0.00 32.14 2.24
360 361 8.823220 AAATTTACATGTAGATGCCCTTAGTT 57.177 30.769 9.49 0.00 32.14 2.24
361 362 8.823220 AATTTACATGTAGATGCCCTTAGTTT 57.177 30.769 9.49 0.00 32.14 2.66
362 363 8.823220 ATTTACATGTAGATGCCCTTAGTTTT 57.177 30.769 8.04 0.00 32.14 2.43
363 364 8.644374 TTTACATGTAGATGCCCTTAGTTTTT 57.356 30.769 5.56 0.00 32.14 1.94
428 429 0.896940 CTTCTTGGTGCAGCCCATGT 60.897 55.000 14.36 0.00 33.60 3.21
517 518 0.666374 CGGGGTCGTTGAAAAGCTTT 59.334 50.000 5.69 5.69 0.00 3.51
534 535 1.792949 CTTTGGACAGACAGTACGTGC 59.207 52.381 0.00 0.00 31.81 5.34
655 671 1.775344 GACGACGCACACTGTCATG 59.225 57.895 0.00 0.00 36.11 3.07
659 675 0.319900 GACGCACACTGTCATGTCCT 60.320 55.000 0.00 0.00 36.37 3.85
664 680 3.664107 GCACACTGTCATGTCCTTCTTA 58.336 45.455 0.00 0.00 0.00 2.10
666 682 3.675225 CACACTGTCATGTCCTTCTTACG 59.325 47.826 0.00 0.00 0.00 3.18
667 683 2.668457 CACTGTCATGTCCTTCTTACGC 59.332 50.000 0.00 0.00 0.00 4.42
668 684 2.563179 ACTGTCATGTCCTTCTTACGCT 59.437 45.455 0.00 0.00 0.00 5.07
671 691 1.134367 TCATGTCCTTCTTACGCTCGG 59.866 52.381 0.00 0.00 0.00 4.63
677 697 0.108804 CTTCTTACGCTCGGCTTCCA 60.109 55.000 0.00 0.00 0.00 3.53
757 777 1.472878 CTCAACATTGCAGCAGAGCAT 59.527 47.619 0.00 0.00 45.19 3.79
758 778 1.201414 TCAACATTGCAGCAGAGCATG 59.799 47.619 0.00 0.00 45.19 4.06
799 821 4.319766 CGCTGCTTAAATACTAGGCCATTG 60.320 45.833 5.01 0.00 0.00 2.82
1135 1194 0.532862 CGCTGCCAACCCCAGTATAG 60.533 60.000 0.00 0.00 32.93 1.31
1178 1241 2.089936 TACGCGTCGTCACAATGGC 61.090 57.895 18.63 0.00 41.54 4.40
1214 1278 4.023365 GCTTCTGTGCTCTGTTCTTTCAAT 60.023 41.667 0.00 0.00 0.00 2.57
1216 1280 5.679734 TCTGTGCTCTGTTCTTTCAATTC 57.320 39.130 0.00 0.00 0.00 2.17
1226 1290 5.475719 TGTTCTTTCAATTCTATCGTCGGT 58.524 37.500 0.00 0.00 0.00 4.69
1242 1441 1.199327 TCGGTCATCTTCTGTGTCGAC 59.801 52.381 9.11 9.11 0.00 4.20
1248 1447 1.318576 TCTTCTGTGTCGACTGCTCA 58.681 50.000 17.92 9.63 0.00 4.26
1251 1450 3.696548 TCTTCTGTGTCGACTGCTCATAT 59.303 43.478 17.92 0.00 0.00 1.78
1252 1451 4.881850 TCTTCTGTGTCGACTGCTCATATA 59.118 41.667 17.92 0.00 0.00 0.86
1299 1498 9.840427 GCAAAGAGCATTTTACTATTTACAAGA 57.160 29.630 0.00 0.00 44.79 3.02
1437 1678 2.922740 TGTCTAGGTGTTGGTGGTTC 57.077 50.000 0.00 0.00 0.00 3.62
1446 1687 1.202758 TGTTGGTGGTTCTGGCTACTG 60.203 52.381 0.00 0.00 0.00 2.74
1527 1780 0.584396 CACTGCGGCGACAAAAAGTA 59.416 50.000 12.98 0.00 0.00 2.24
1549 1802 7.630924 AGTATGAACTTTAAATGATACGCTGC 58.369 34.615 0.00 0.00 29.00 5.25
1550 1803 4.892655 TGAACTTTAAATGATACGCTGCG 58.107 39.130 21.91 21.91 0.00 5.18
1551 1804 4.627900 TGAACTTTAAATGATACGCTGCGA 59.372 37.500 30.47 12.81 0.00 5.10
1552 1805 5.120986 TGAACTTTAAATGATACGCTGCGAA 59.879 36.000 30.47 11.29 0.00 4.70
1553 1806 5.539582 ACTTTAAATGATACGCTGCGAAA 57.460 34.783 30.47 16.41 0.00 3.46
1554 1807 5.933790 ACTTTAAATGATACGCTGCGAAAA 58.066 33.333 30.47 13.74 0.00 2.29
1555 1808 6.375377 ACTTTAAATGATACGCTGCGAAAAA 58.625 32.000 30.47 11.66 0.00 1.94
1556 1809 7.027161 ACTTTAAATGATACGCTGCGAAAAAT 58.973 30.769 30.47 15.38 0.00 1.82
1557 1810 8.178964 ACTTTAAATGATACGCTGCGAAAAATA 58.821 29.630 30.47 10.55 0.00 1.40
1558 1811 8.897457 TTTAAATGATACGCTGCGAAAAATAA 57.103 26.923 30.47 14.46 0.00 1.40
1559 1812 9.509855 TTTAAATGATACGCTGCGAAAAATAAT 57.490 25.926 30.47 11.47 0.00 1.28
1560 1813 6.974677 AATGATACGCTGCGAAAAATAATG 57.025 33.333 30.47 0.00 0.00 1.90
1561 1814 5.726729 TGATACGCTGCGAAAAATAATGA 57.273 34.783 30.47 1.76 0.00 2.57
1562 1815 6.299023 TGATACGCTGCGAAAAATAATGAT 57.701 33.333 30.47 3.66 0.00 2.45
1563 1816 7.414814 TGATACGCTGCGAAAAATAATGATA 57.585 32.000 30.47 6.04 0.00 2.15
1564 1817 7.287950 TGATACGCTGCGAAAAATAATGATAC 58.712 34.615 30.47 3.70 0.00 2.24
1565 1818 4.514506 ACGCTGCGAAAAATAATGATACG 58.485 39.130 30.47 0.00 0.00 3.06
1566 1819 3.354920 CGCTGCGAAAAATAATGATACGC 59.645 43.478 18.66 0.00 43.79 4.42
1567 1820 4.527564 GCTGCGAAAAATAATGATACGCT 58.472 39.130 0.00 0.00 43.85 5.07
1619 1872 4.560819 CGTATCAGCTTTCACTCACTCTTC 59.439 45.833 0.00 0.00 0.00 2.87
1634 1890 6.155221 ACTCACTCTTCACAAGCATATAGGAA 59.845 38.462 0.00 0.00 0.00 3.36
1637 1893 8.363390 TCACTCTTCACAAGCATATAGGAATAG 58.637 37.037 0.00 0.00 0.00 1.73
1640 1896 7.901029 TCTTCACAAGCATATAGGAATAGGAG 58.099 38.462 0.00 0.00 0.00 3.69
1641 1897 7.510685 TCTTCACAAGCATATAGGAATAGGAGT 59.489 37.037 0.00 0.00 0.00 3.85
1642 1898 8.721133 TTCACAAGCATATAGGAATAGGAGTA 57.279 34.615 0.00 0.00 0.00 2.59
1643 1899 8.901472 TCACAAGCATATAGGAATAGGAGTAT 57.099 34.615 0.00 0.00 0.00 2.12
1644 1900 8.753133 TCACAAGCATATAGGAATAGGAGTATG 58.247 37.037 0.00 0.00 0.00 2.39
1645 1901 8.753133 CACAAGCATATAGGAATAGGAGTATGA 58.247 37.037 0.00 0.00 0.00 2.15
1646 1902 9.499369 ACAAGCATATAGGAATAGGAGTATGAT 57.501 33.333 0.00 0.00 0.00 2.45
1792 2054 5.007626 CCGCAGTCTGCAGCTAATTAAATTA 59.992 40.000 24.13 0.00 45.36 1.40
1793 2055 6.458206 CCGCAGTCTGCAGCTAATTAAATTAA 60.458 38.462 24.13 0.00 45.36 1.40
1794 2056 6.630443 CGCAGTCTGCAGCTAATTAAATTAAG 59.370 38.462 24.13 0.00 45.36 1.85
1795 2057 7.475840 GCAGTCTGCAGCTAATTAAATTAAGT 58.524 34.615 20.16 0.00 44.26 2.24
1796 2058 7.970614 GCAGTCTGCAGCTAATTAAATTAAGTT 59.029 33.333 20.16 0.00 44.26 2.66
1848 2110 0.794473 GTAAAGGGTTCGCCACTTCG 59.206 55.000 0.00 0.00 39.65 3.79
1899 2161 9.487442 AATAATTGGATTTTAGTATGGTGGTGT 57.513 29.630 0.00 0.00 0.00 4.16
1906 2168 7.148306 GGATTTTAGTATGGTGGTGTTACTGTG 60.148 40.741 0.00 0.00 0.00 3.66
1932 2194 0.035439 ATTGGTAGGGTTCAGCCACG 60.035 55.000 0.00 0.00 39.65 4.94
1992 2259 2.311688 GATCACGCACCCCCTCGATT 62.312 60.000 0.00 0.00 0.00 3.34
2062 2329 4.909696 TGCTTTTCTTTTGTTCCGATCA 57.090 36.364 0.00 0.00 0.00 2.92
2088 2355 2.416747 CACTGATGGCATACGGTATGG 58.583 52.381 25.08 12.52 36.68 2.74
2147 2420 6.255670 TGACACACTGATAAATCGCTATGTTC 59.744 38.462 0.00 0.00 0.00 3.18
2237 2513 0.589708 CCGATCGCCGTGTATGTAGA 59.410 55.000 10.32 0.00 36.31 2.59
2282 2558 5.572896 GGAACAACGATTAATTTTGCAGAGG 59.427 40.000 9.55 0.00 0.00 3.69
3331 3610 3.071479 GCAGGTACGGTTTCTTGATTCA 58.929 45.455 0.00 0.00 0.00 2.57
3371 3650 9.821662 CACATGTTCATATGCATTTACATAGAG 57.178 33.333 3.54 1.88 36.03 2.43
3372 3651 9.783081 ACATGTTCATATGCATTTACATAGAGA 57.217 29.630 3.54 0.00 36.03 3.10
3392 3671 2.281070 CCGTGACAAGCCAGCACT 60.281 61.111 0.00 0.00 0.00 4.40
3476 3755 1.834263 GCCTTGTCCTGACAGTATCCT 59.166 52.381 0.93 0.00 42.94 3.24
3477 3756 2.419297 GCCTTGTCCTGACAGTATCCTG 60.419 54.545 0.93 0.00 42.94 3.86
3478 3757 3.099905 CCTTGTCCTGACAGTATCCTGA 58.900 50.000 0.93 0.00 42.94 3.86
3480 3759 4.382470 CCTTGTCCTGACAGTATCCTGAAG 60.382 50.000 0.93 0.00 42.94 3.02
3481 3760 3.099905 TGTCCTGACAGTATCCTGAAGG 58.900 50.000 0.93 0.00 42.50 3.46
3482 3761 2.432510 GTCCTGACAGTATCCTGAAGGG 59.567 54.545 10.37 2.00 41.95 3.95
3483 3762 2.044492 TCCTGACAGTATCCTGAAGGGT 59.956 50.000 10.37 0.00 41.95 4.34
3484 3763 2.840651 CCTGACAGTATCCTGAAGGGTT 59.159 50.000 0.93 0.00 41.50 4.11
3485 3764 4.030913 CCTGACAGTATCCTGAAGGGTTA 58.969 47.826 0.93 0.00 41.50 2.85
3486 3765 4.656112 CCTGACAGTATCCTGAAGGGTTAT 59.344 45.833 0.93 0.00 41.50 1.89
3487 3766 5.453903 CCTGACAGTATCCTGAAGGGTTATG 60.454 48.000 0.93 0.00 41.50 1.90
3489 3768 3.136626 ACAGTATCCTGAAGGGTTATGGC 59.863 47.826 0.00 0.00 41.50 4.40
3490 3769 2.368875 AGTATCCTGAAGGGTTATGGCG 59.631 50.000 0.00 0.00 36.25 5.69
3491 3770 0.179018 ATCCTGAAGGGTTATGGCGC 60.179 55.000 0.00 0.00 36.25 6.53
3546 3853 4.130118 TCAACTCCTTGAAAGAAGACAGC 58.870 43.478 0.00 0.00 33.20 4.40
3570 3879 5.114764 TGATCATTCTCTTGGGTTATGCA 57.885 39.130 0.00 0.00 0.00 3.96
3575 3884 7.953005 TCATTCTCTTGGGTTATGCATAAAA 57.047 32.000 20.46 10.73 0.00 1.52
3576 3885 7.771183 TCATTCTCTTGGGTTATGCATAAAAC 58.229 34.615 20.46 15.81 0.00 2.43
3577 3886 7.615365 TCATTCTCTTGGGTTATGCATAAAACT 59.385 33.333 20.46 0.00 0.00 2.66
3578 3887 6.757897 TCTCTTGGGTTATGCATAAAACTG 57.242 37.500 20.46 12.51 0.00 3.16
3579 3888 5.652014 TCTCTTGGGTTATGCATAAAACTGG 59.348 40.000 20.46 11.10 0.00 4.00
3580 3889 4.159506 TCTTGGGTTATGCATAAAACTGGC 59.840 41.667 20.46 7.27 0.00 4.85
3581 3890 2.763448 TGGGTTATGCATAAAACTGGCC 59.237 45.455 20.46 15.26 0.00 5.36
3582 3891 2.102420 GGGTTATGCATAAAACTGGCCC 59.898 50.000 20.46 19.80 0.00 5.80
3583 3892 3.031013 GGTTATGCATAAAACTGGCCCT 58.969 45.455 20.46 0.00 0.00 5.19
3584 3893 3.068165 GGTTATGCATAAAACTGGCCCTC 59.932 47.826 20.46 4.50 0.00 4.30
3585 3894 2.834638 ATGCATAAAACTGGCCCTCT 57.165 45.000 0.00 0.00 0.00 3.69
3586 3895 2.128771 TGCATAAAACTGGCCCTCTC 57.871 50.000 0.00 0.00 0.00 3.20
3587 3896 1.340991 TGCATAAAACTGGCCCTCTCC 60.341 52.381 0.00 0.00 0.00 3.71
3588 3897 1.064389 GCATAAAACTGGCCCTCTCCT 60.064 52.381 0.00 0.00 0.00 3.69
3589 3898 2.924421 CATAAAACTGGCCCTCTCCTC 58.076 52.381 0.00 0.00 0.00 3.71
3590 3899 1.286248 TAAAACTGGCCCTCTCCTCC 58.714 55.000 0.00 0.00 0.00 4.30
3591 3900 1.501654 AAAACTGGCCCTCTCCTCCC 61.502 60.000 0.00 0.00 0.00 4.30
3592 3901 3.952799 AACTGGCCCTCTCCTCCCC 62.953 68.421 0.00 0.00 0.00 4.81
3595 3904 4.565850 GGCCCTCTCCTCCCCGAT 62.566 72.222 0.00 0.00 0.00 4.18
3614 3923 5.395214 CCCGATAAAAATCCCCCTCTTTTTG 60.395 44.000 0.00 0.00 35.82 2.44
3615 3924 5.186992 CCGATAAAAATCCCCCTCTTTTTGT 59.813 40.000 0.00 0.00 35.82 2.83
3616 3925 6.099341 CGATAAAAATCCCCCTCTTTTTGTG 58.901 40.000 0.00 0.00 35.82 3.33
3617 3926 4.705110 AAAAATCCCCCTCTTTTTGTGG 57.295 40.909 0.00 0.00 34.26 4.17
3692 4158 2.611224 GGTGGCCTTCAGAATTTGCAAG 60.611 50.000 3.32 0.00 0.00 4.01
3743 4209 1.274167 ACCGAAGCTTGGACGTCATTA 59.726 47.619 18.91 0.00 0.00 1.90
3744 4210 2.289195 ACCGAAGCTTGGACGTCATTAA 60.289 45.455 18.91 8.31 0.00 1.40
3745 4211 2.093783 CCGAAGCTTGGACGTCATTAAC 59.906 50.000 18.91 2.25 0.00 2.01
3746 4212 2.993899 CGAAGCTTGGACGTCATTAACT 59.006 45.455 18.91 4.72 0.00 2.24
3747 4213 3.060895 CGAAGCTTGGACGTCATTAACTC 59.939 47.826 18.91 5.91 0.00 3.01
3748 4214 3.678056 AGCTTGGACGTCATTAACTCA 57.322 42.857 18.91 0.65 0.00 3.41
3749 4215 4.002906 AGCTTGGACGTCATTAACTCAA 57.997 40.909 18.91 9.24 0.00 3.02
3751 4217 5.730550 AGCTTGGACGTCATTAACTCAATA 58.269 37.500 18.91 0.00 0.00 1.90
3752 4218 6.170506 AGCTTGGACGTCATTAACTCAATAA 58.829 36.000 18.91 0.00 0.00 1.40
3753 4219 6.313905 AGCTTGGACGTCATTAACTCAATAAG 59.686 38.462 18.91 0.29 0.00 1.73
3755 4221 7.277098 GCTTGGACGTCATTAACTCAATAAGTA 59.723 37.037 18.91 0.00 37.17 2.24
3756 4222 8.697846 TTGGACGTCATTAACTCAATAAGTAG 57.302 34.615 18.91 0.00 37.17 2.57
3757 4223 7.833786 TGGACGTCATTAACTCAATAAGTAGT 58.166 34.615 18.91 0.00 37.17 2.73
3758 4224 8.959548 TGGACGTCATTAACTCAATAAGTAGTA 58.040 33.333 18.91 0.00 37.17 1.82
3759 4225 9.230932 GGACGTCATTAACTCAATAAGTAGTAC 57.769 37.037 18.91 0.00 37.17 2.73
3779 4255 6.641474 AGTACTACTTCTATTTTGTCCTGCC 58.359 40.000 0.00 0.00 0.00 4.85
3806 4282 4.697352 GGAGAAACAATAGTGCAGACATGT 59.303 41.667 0.00 0.00 0.00 3.21
3880 4357 6.869695 ACAAGGTTTTAACGAAAAGGAACAT 58.130 32.000 0.00 0.00 35.21 2.71
3886 4364 8.111836 GGTTTTAACGAAAAGGAACATCAAAAC 58.888 33.333 0.00 0.00 35.21 2.43
3905 4383 7.279615 TCAAAACACAAGAGAGAAGTCCATAA 58.720 34.615 0.00 0.00 0.00 1.90
3908 4386 9.965902 AAAACACAAGAGAGAAGTCCATAATAT 57.034 29.630 0.00 0.00 0.00 1.28
3946 5674 5.880332 TCAATTTCTCTAAGATTCAACCCCG 59.120 40.000 0.00 0.00 0.00 5.73
3949 5677 3.437213 TCTCTAAGATTCAACCCCGACA 58.563 45.455 0.00 0.00 0.00 4.35
3973 5701 9.838339 ACATCTAAAATCGGATAAGATTCAACT 57.162 29.630 7.37 0.00 39.69 3.16
4011 5769 1.819903 GCTACGACTCAACCCTTCTCT 59.180 52.381 0.00 0.00 0.00 3.10
4015 5773 0.533032 GACTCAACCCTTCTCTCCCG 59.467 60.000 0.00 0.00 0.00 5.14
4025 5783 2.283966 CTCTCCCGTGACCCTGGT 60.284 66.667 0.00 0.00 0.00 4.00
4045 5803 0.107800 TTTGACCCGTTGACCGTTGA 60.108 50.000 0.00 0.00 33.66 3.18
4048 5806 0.314935 GACCCGTTGACCGTTGAGTA 59.685 55.000 0.00 0.00 33.66 2.59
4050 5808 1.269936 ACCCGTTGACCGTTGAGTAAG 60.270 52.381 0.00 0.00 33.66 2.34
4051 5809 0.788391 CCGTTGACCGTTGAGTAAGC 59.212 55.000 0.00 0.00 33.66 3.09
4064 5822 0.325933 AGTAAGCAGCCATGTCAGCA 59.674 50.000 0.00 0.00 0.00 4.41
4117 5875 8.975410 TTCAATGCTATTCTTGATTTTGTCAG 57.025 30.769 0.00 0.00 38.29 3.51
4120 5878 8.461222 CAATGCTATTCTTGATTTTGTCAGGTA 58.539 33.333 0.00 0.00 38.29 3.08
4234 5993 6.200808 CAAAATTTGACCAAAATTGTGGCTC 58.799 36.000 15.07 11.56 45.73 4.70
4241 6000 3.565063 ACCAAAATTGTGGCTCAAAATGC 59.435 39.130 15.07 0.00 43.00 3.56
4293 6052 9.078990 ACCTAATAATAAAAGGGCTATTGCTTC 57.921 33.333 0.00 0.00 39.59 3.86
4294 6053 9.301897 CCTAATAATAAAAGGGCTATTGCTTCT 57.698 33.333 0.00 0.00 39.59 2.85
4296 6055 5.859205 AATAAAAGGGCTATTGCTTCTGG 57.141 39.130 0.00 0.00 39.59 3.86
4297 6056 1.478631 AAAGGGCTATTGCTTCTGGC 58.521 50.000 0.00 0.00 39.59 4.85
4298 6057 0.749454 AAGGGCTATTGCTTCTGGCG 60.749 55.000 0.00 0.00 45.43 5.69
4299 6058 1.153168 GGGCTATTGCTTCTGGCGA 60.153 57.895 0.00 0.00 45.43 5.54
4300 6059 0.536006 GGGCTATTGCTTCTGGCGAT 60.536 55.000 0.00 0.00 46.07 4.58
4301 6060 1.270839 GGGCTATTGCTTCTGGCGATA 60.271 52.381 0.00 0.00 42.81 2.92
4302 6061 1.801178 GGCTATTGCTTCTGGCGATAC 59.199 52.381 0.00 0.00 42.81 2.24
4303 6062 1.457303 GCTATTGCTTCTGGCGATACG 59.543 52.381 0.00 0.00 42.81 3.06
4304 6063 2.743938 CTATTGCTTCTGGCGATACGT 58.256 47.619 0.00 0.00 42.81 3.57
4305 6064 1.571919 ATTGCTTCTGGCGATACGTC 58.428 50.000 0.00 0.00 42.81 4.34
4306 6065 0.245266 TTGCTTCTGGCGATACGTCA 59.755 50.000 0.00 0.00 45.43 4.35
4307 6066 0.457853 TGCTTCTGGCGATACGTCAC 60.458 55.000 0.00 0.00 45.43 3.67
4308 6067 1.472276 GCTTCTGGCGATACGTCACG 61.472 60.000 0.00 0.00 36.25 4.35
4309 6068 0.866061 CTTCTGGCGATACGTCACGG 60.866 60.000 0.35 0.00 36.25 4.94
4310 6069 1.307355 TTCTGGCGATACGTCACGGA 61.307 55.000 0.35 0.00 36.25 4.69
4311 6070 1.138036 CTGGCGATACGTCACGGAA 59.862 57.895 0.35 0.00 36.25 4.30
4312 6071 0.457166 CTGGCGATACGTCACGGAAA 60.457 55.000 0.35 0.00 36.25 3.13
4313 6072 0.173935 TGGCGATACGTCACGGAAAT 59.826 50.000 0.35 0.00 36.25 2.17
4314 6073 1.283736 GGCGATACGTCACGGAAATT 58.716 50.000 0.35 0.00 0.00 1.82
4315 6074 1.005347 GGCGATACGTCACGGAAATTG 60.005 52.381 0.35 0.00 0.00 2.32
4316 6075 1.591394 GCGATACGTCACGGAAATTGC 60.591 52.381 0.35 4.03 0.00 3.56
4317 6076 1.005347 CGATACGTCACGGAAATTGCC 60.005 52.381 0.35 0.00 0.00 4.52
4318 6077 1.329599 GATACGTCACGGAAATTGCCC 59.670 52.381 0.35 0.00 0.00 5.36
4319 6078 0.674269 TACGTCACGGAAATTGCCCC 60.674 55.000 0.35 0.00 0.00 5.80
4320 6079 2.696759 CGTCACGGAAATTGCCCCC 61.697 63.158 0.00 0.00 0.00 5.40
4342 6101 7.761608 CCCCCTAAATTGTAAGATATTACCCA 58.238 38.462 7.73 0.00 0.00 4.51
4343 6102 8.228905 CCCCCTAAATTGTAAGATATTACCCAA 58.771 37.037 7.73 0.00 0.00 4.12
4344 6103 9.074576 CCCCTAAATTGTAAGATATTACCCAAC 57.925 37.037 7.73 0.00 0.00 3.77
4345 6104 9.635404 CCCTAAATTGTAAGATATTACCCAACA 57.365 33.333 7.73 0.00 0.00 3.33
4349 6108 9.816354 AAATTGTAAGATATTACCCAACAATGC 57.184 29.630 7.73 0.00 36.50 3.56
4350 6109 6.952773 TGTAAGATATTACCCAACAATGCC 57.047 37.500 7.73 0.00 0.00 4.40
4351 6110 6.427441 TGTAAGATATTACCCAACAATGCCA 58.573 36.000 7.73 0.00 0.00 4.92
4352 6111 5.852282 AAGATATTACCCAACAATGCCAC 57.148 39.130 0.00 0.00 0.00 5.01
4353 6112 4.215109 AGATATTACCCAACAATGCCACC 58.785 43.478 0.00 0.00 0.00 4.61
4354 6113 2.621556 ATTACCCAACAATGCCACCT 57.378 45.000 0.00 0.00 0.00 4.00
4355 6114 3.748645 ATTACCCAACAATGCCACCTA 57.251 42.857 0.00 0.00 0.00 3.08
4356 6115 2.500392 TACCCAACAATGCCACCTAC 57.500 50.000 0.00 0.00 0.00 3.18
4357 6116 0.777446 ACCCAACAATGCCACCTACT 59.223 50.000 0.00 0.00 0.00 2.57
4358 6117 1.271926 ACCCAACAATGCCACCTACTC 60.272 52.381 0.00 0.00 0.00 2.59
4359 6118 1.463674 CCAACAATGCCACCTACTCC 58.536 55.000 0.00 0.00 0.00 3.85
4360 6119 1.463674 CAACAATGCCACCTACTCCC 58.536 55.000 0.00 0.00 0.00 4.30
4361 6120 1.004745 CAACAATGCCACCTACTCCCT 59.995 52.381 0.00 0.00 0.00 4.20
4362 6121 0.912486 ACAATGCCACCTACTCCCTC 59.088 55.000 0.00 0.00 0.00 4.30
4363 6122 0.181350 CAATGCCACCTACTCCCTCC 59.819 60.000 0.00 0.00 0.00 4.30
4364 6123 1.338136 AATGCCACCTACTCCCTCCG 61.338 60.000 0.00 0.00 0.00 4.63
4365 6124 2.363925 GCCACCTACTCCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
4366 6125 2.424733 GCCACCTACTCCCTCCGTC 61.425 68.421 0.00 0.00 0.00 4.79
4367 6126 1.757340 CCACCTACTCCCTCCGTCC 60.757 68.421 0.00 0.00 0.00 4.79
4368 6127 1.757340 CACCTACTCCCTCCGTCCC 60.757 68.421 0.00 0.00 0.00 4.46
4369 6128 2.243888 ACCTACTCCCTCCGTCCCA 61.244 63.158 0.00 0.00 0.00 4.37
4370 6129 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
4371 6130 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
4372 6131 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
4373 6132 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
4374 6133 3.245514 CCTACTCCCTCCGTCCCATAATA 60.246 52.174 0.00 0.00 0.00 0.98
4375 6134 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4376 6135 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4377 6136 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4378 6137 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4379 6138 4.359105 TCCCTCCGTCCCATAATATAAGG 58.641 47.826 0.00 0.00 0.00 2.69
4380 6139 3.454812 CCCTCCGTCCCATAATATAAGGG 59.545 52.174 0.00 0.00 44.22 3.95
4381 6140 4.101856 CCTCCGTCCCATAATATAAGGGT 58.898 47.826 6.87 0.00 43.31 4.34
4382 6141 4.081087 CCTCCGTCCCATAATATAAGGGTG 60.081 50.000 6.87 2.60 43.31 4.61
4383 6142 4.495565 TCCGTCCCATAATATAAGGGTGT 58.504 43.478 6.87 0.00 43.31 4.16
4384 6143 4.909088 TCCGTCCCATAATATAAGGGTGTT 59.091 41.667 6.87 0.00 43.31 3.32
4385 6144 5.370289 TCCGTCCCATAATATAAGGGTGTTT 59.630 40.000 6.87 0.00 43.31 2.83
4386 6145 5.472137 CCGTCCCATAATATAAGGGTGTTTG 59.528 44.000 6.87 0.00 43.31 2.93
4387 6146 6.292923 CGTCCCATAATATAAGGGTGTTTGA 58.707 40.000 6.87 0.00 43.31 2.69
4388 6147 6.426937 CGTCCCATAATATAAGGGTGTTTGAG 59.573 42.308 6.87 0.00 43.31 3.02
4389 6148 6.206829 GTCCCATAATATAAGGGTGTTTGAGC 59.793 42.308 6.87 0.00 43.31 4.26
4390 6149 5.181245 CCCATAATATAAGGGTGTTTGAGCG 59.819 44.000 0.00 0.00 37.81 5.03
4391 6150 5.334879 CCATAATATAAGGGTGTTTGAGCGC 60.335 44.000 0.00 0.00 0.00 5.92
4392 6151 2.772077 TATAAGGGTGTTTGAGCGCA 57.228 45.000 11.47 0.00 0.00 6.09
4393 6152 1.165270 ATAAGGGTGTTTGAGCGCAC 58.835 50.000 11.47 3.13 35.07 5.34
4394 6153 0.107831 TAAGGGTGTTTGAGCGCACT 59.892 50.000 11.47 0.00 36.03 4.40
4395 6154 0.107831 AAGGGTGTTTGAGCGCACTA 59.892 50.000 11.47 0.00 36.03 2.74
4396 6155 0.320771 AGGGTGTTTGAGCGCACTAG 60.321 55.000 11.47 0.00 36.03 2.57
4397 6156 0.602905 GGGTGTTTGAGCGCACTAGT 60.603 55.000 11.47 0.00 36.03 2.57
4398 6157 0.512952 GGTGTTTGAGCGCACTAGTG 59.487 55.000 18.93 18.93 36.03 2.74
4399 6158 1.497991 GTGTTTGAGCGCACTAGTGA 58.502 50.000 27.08 1.65 33.22 3.41
4400 6159 2.069273 GTGTTTGAGCGCACTAGTGAT 58.931 47.619 27.08 11.07 33.22 3.06
4401 6160 3.250744 GTGTTTGAGCGCACTAGTGATA 58.749 45.455 27.08 4.12 33.22 2.15
4402 6161 3.678072 GTGTTTGAGCGCACTAGTGATAA 59.322 43.478 27.08 9.82 33.22 1.75
4403 6162 4.151689 GTGTTTGAGCGCACTAGTGATAAA 59.848 41.667 27.08 14.63 33.22 1.40
4404 6163 4.752604 TGTTTGAGCGCACTAGTGATAAAA 59.247 37.500 27.08 13.11 0.00 1.52
4405 6164 5.237561 TGTTTGAGCGCACTAGTGATAAAAA 59.762 36.000 27.08 15.09 0.00 1.94
4406 6165 4.921470 TGAGCGCACTAGTGATAAAAAC 57.079 40.909 27.08 5.72 0.00 2.43
4407 6166 3.366724 TGAGCGCACTAGTGATAAAAACG 59.633 43.478 27.08 17.99 0.00 3.60
4408 6167 2.093783 AGCGCACTAGTGATAAAAACGC 59.906 45.455 27.08 25.72 43.79 4.84
4409 6168 2.093783 GCGCACTAGTGATAAAAACGCT 59.906 45.455 27.08 0.00 40.57 5.07
4410 6169 3.781280 GCGCACTAGTGATAAAAACGCTC 60.781 47.826 27.08 2.99 40.57 5.03
4411 6170 3.612860 CGCACTAGTGATAAAAACGCTCT 59.387 43.478 27.08 0.00 0.00 4.09
4412 6171 4.091509 CGCACTAGTGATAAAAACGCTCTT 59.908 41.667 27.08 0.00 0.00 2.85
4413 6172 5.287752 CGCACTAGTGATAAAAACGCTCTTA 59.712 40.000 27.08 0.00 0.00 2.10
4414 6173 6.019801 CGCACTAGTGATAAAAACGCTCTTAT 60.020 38.462 27.08 0.00 0.00 1.73
4415 6174 7.166970 CGCACTAGTGATAAAAACGCTCTTATA 59.833 37.037 27.08 0.00 0.00 0.98
4416 6175 8.979574 GCACTAGTGATAAAAACGCTCTTATAT 58.020 33.333 27.08 0.00 0.00 0.86
4442 6201 6.525578 TGCTCTTATATTATGGGACGTAGG 57.474 41.667 0.00 0.00 0.00 3.18
4443 6202 5.421056 TGCTCTTATATTATGGGACGTAGGG 59.579 44.000 0.00 0.00 0.00 3.53
4444 6203 5.655532 GCTCTTATATTATGGGACGTAGGGA 59.344 44.000 0.00 0.00 0.00 4.20
4445 6204 6.183360 GCTCTTATATTATGGGACGTAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
4446 6205 6.797707 TCTTATATTATGGGACGTAGGGAGT 58.202 40.000 0.00 0.00 0.00 3.85
4447 6206 7.932134 TCTTATATTATGGGACGTAGGGAGTA 58.068 38.462 0.00 0.00 0.00 2.59
4448 6207 8.563502 TCTTATATTATGGGACGTAGGGAGTAT 58.436 37.037 0.00 0.00 0.00 2.12
4449 6208 9.857656 CTTATATTATGGGACGTAGGGAGTATA 57.142 37.037 0.00 0.00 0.00 1.47
4452 6211 9.725206 ATATTATGGGACGTAGGGAGTATAATT 57.275 33.333 0.00 0.00 0.00 1.40
4453 6212 5.740290 ATGGGACGTAGGGAGTATAATTG 57.260 43.478 0.00 0.00 0.00 2.32
4454 6213 4.806892 TGGGACGTAGGGAGTATAATTGA 58.193 43.478 0.00 0.00 0.00 2.57
4455 6214 5.399991 TGGGACGTAGGGAGTATAATTGAT 58.600 41.667 0.00 0.00 0.00 2.57
4456 6215 6.554784 TGGGACGTAGGGAGTATAATTGATA 58.445 40.000 0.00 0.00 0.00 2.15
4457 6216 7.011994 TGGGACGTAGGGAGTATAATTGATAA 58.988 38.462 0.00 0.00 0.00 1.75
4458 6217 7.510001 TGGGACGTAGGGAGTATAATTGATAAA 59.490 37.037 0.00 0.00 0.00 1.40
4459 6218 8.537858 GGGACGTAGGGAGTATAATTGATAAAT 58.462 37.037 0.00 0.00 0.00 1.40
4475 6234 9.849166 AATTGATAAATAACGTTTTACACAGGG 57.151 29.630 5.91 0.00 0.00 4.45
4476 6235 7.380431 TGATAAATAACGTTTTACACAGGGG 57.620 36.000 5.91 0.00 0.00 4.79
4477 6236 7.166851 TGATAAATAACGTTTTACACAGGGGA 58.833 34.615 5.91 0.00 0.00 4.81
4478 6237 7.664731 TGATAAATAACGTTTTACACAGGGGAA 59.335 33.333 5.91 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.974721 CCACGGCCAACCCAAGCT 62.975 66.667 2.24 0.00 0.00 3.74
57 58 2.119484 TAGTCCACGGCCAACCCAAG 62.119 60.000 2.24 0.00 0.00 3.61
59 60 2.527123 TAGTCCACGGCCAACCCA 60.527 61.111 2.24 0.00 0.00 4.51
60 61 2.267961 CTAGTCCACGGCCAACCC 59.732 66.667 2.24 0.00 0.00 4.11
63 64 0.892755 CTACACTAGTCCACGGCCAA 59.107 55.000 2.24 0.00 0.00 4.52
69 70 3.944015 ACGGATACACTACACTAGTCCAC 59.056 47.826 0.00 0.00 36.76 4.02
73 74 3.693085 CCACACGGATACACTACACTAGT 59.307 47.826 0.00 0.00 40.28 2.57
108 109 2.625906 CATGTACGATTGCGCGGG 59.374 61.111 8.83 0.00 42.48 6.13
112 113 2.539688 ACTATGTGCATGTACGATTGCG 59.460 45.455 9.48 0.00 41.80 4.85
115 116 7.603963 TGTAAAACTATGTGCATGTACGATT 57.396 32.000 9.48 0.00 0.00 3.34
117 118 7.603963 AATGTAAAACTATGTGCATGTACGA 57.396 32.000 9.48 0.00 0.00 3.43
206 207 2.433604 TGCAAACAAGCCCAGATTTCAA 59.566 40.909 0.00 0.00 0.00 2.69
214 215 3.993081 CGAAATTTATGCAAACAAGCCCA 59.007 39.130 0.00 0.00 0.00 5.36
229 230 5.642686 TCTTCAACAAACCGAACGAAATTT 58.357 33.333 0.00 0.00 0.00 1.82
236 237 8.568732 TTAAATTCATCTTCAACAAACCGAAC 57.431 30.769 0.00 0.00 0.00 3.95
251 252 4.508861 AGCCGCATGCATTTTAAATTCATC 59.491 37.500 19.57 0.00 44.83 2.92
260 261 1.545582 AGTTGTAGCCGCATGCATTTT 59.454 42.857 19.57 2.29 44.83 1.82
266 267 1.695893 CGTCCAGTTGTAGCCGCATG 61.696 60.000 0.00 0.00 0.00 4.06
279 280 3.650369 CGGAAAACCACCGTCCAG 58.350 61.111 0.00 0.00 44.57 3.86
302 303 1.040893 TCCGTGGACTCCGCATACAT 61.041 55.000 9.35 0.00 32.88 2.29
315 316 0.039437 CCTTCGATATCCGTCCGTGG 60.039 60.000 0.00 0.00 39.75 4.94
316 317 0.949397 TCCTTCGATATCCGTCCGTG 59.051 55.000 0.00 0.00 39.75 4.94
317 318 1.683943 TTCCTTCGATATCCGTCCGT 58.316 50.000 0.00 0.00 39.75 4.69
319 320 5.987347 TGTAAATTTCCTTCGATATCCGTCC 59.013 40.000 0.00 0.00 39.75 4.79
320 321 7.170998 ACATGTAAATTTCCTTCGATATCCGTC 59.829 37.037 0.00 0.00 39.75 4.79
321 322 6.990349 ACATGTAAATTTCCTTCGATATCCGT 59.010 34.615 0.00 0.00 39.75 4.69
322 323 7.421530 ACATGTAAATTTCCTTCGATATCCG 57.578 36.000 0.00 0.00 40.25 4.18
326 327 8.988934 GCATCTACATGTAAATTTCCTTCGATA 58.011 33.333 7.06 0.00 31.86 2.92
327 328 7.041098 GGCATCTACATGTAAATTTCCTTCGAT 60.041 37.037 7.06 0.00 31.86 3.59
328 329 6.260050 GGCATCTACATGTAAATTTCCTTCGA 59.740 38.462 7.06 0.00 31.86 3.71
329 330 6.430451 GGCATCTACATGTAAATTTCCTTCG 58.570 40.000 7.06 0.00 31.86 3.79
330 331 6.547510 AGGGCATCTACATGTAAATTTCCTTC 59.452 38.462 7.06 0.00 31.86 3.46
331 332 6.435164 AGGGCATCTACATGTAAATTTCCTT 58.565 36.000 7.06 0.00 31.86 3.36
368 369 0.100682 CTTCACATGCTGCATCTGGC 59.899 55.000 13.10 0.00 45.13 4.85
369 370 0.738975 CCTTCACATGCTGCATCTGG 59.261 55.000 13.10 4.46 0.00 3.86
370 371 1.400846 GTCCTTCACATGCTGCATCTG 59.599 52.381 13.10 11.98 0.00 2.90
371 372 1.747709 GTCCTTCACATGCTGCATCT 58.252 50.000 13.10 0.00 0.00 2.90
372 373 0.376152 CGTCCTTCACATGCTGCATC 59.624 55.000 13.10 0.00 0.00 3.91
373 374 1.651240 GCGTCCTTCACATGCTGCAT 61.651 55.000 9.81 9.81 0.00 3.96
374 375 2.327343 GCGTCCTTCACATGCTGCA 61.327 57.895 4.13 4.13 0.00 4.41
375 376 1.975363 GAGCGTCCTTCACATGCTGC 61.975 60.000 0.00 0.00 36.19 5.25
376 377 0.671472 TGAGCGTCCTTCACATGCTG 60.671 55.000 0.00 0.00 36.19 4.41
377 378 0.390866 CTGAGCGTCCTTCACATGCT 60.391 55.000 0.00 0.00 38.89 3.79
378 379 0.671781 ACTGAGCGTCCTTCACATGC 60.672 55.000 0.00 0.00 0.00 4.06
379 380 1.462283 CAACTGAGCGTCCTTCACATG 59.538 52.381 0.00 0.00 0.00 3.21
380 381 1.800805 CAACTGAGCGTCCTTCACAT 58.199 50.000 0.00 0.00 0.00 3.21
381 382 0.880278 GCAACTGAGCGTCCTTCACA 60.880 55.000 0.00 0.00 0.00 3.58
382 383 0.601311 AGCAACTGAGCGTCCTTCAC 60.601 55.000 0.00 0.00 40.15 3.18
428 429 1.214175 TGGGCTCTGGTGAAGTGAAAA 59.786 47.619 0.00 0.00 0.00 2.29
517 518 1.663739 GGCACGTACTGTCTGTCCA 59.336 57.895 0.00 0.00 0.00 4.02
655 671 0.108756 AAGCCGAGCGTAAGAAGGAC 60.109 55.000 0.00 0.00 43.02 3.85
659 675 0.389426 GTGGAAGCCGAGCGTAAGAA 60.389 55.000 0.00 0.00 43.02 2.52
671 691 3.056328 GGGAAGCACGGTGGAAGC 61.056 66.667 10.60 0.00 0.00 3.86
769 791 1.947456 GTATTTAAGCAGCGGAAGGGG 59.053 52.381 0.00 0.00 0.00 4.79
799 821 1.079336 GACTGGCGTAGGGTTCACC 60.079 63.158 0.00 0.00 40.67 4.02
895 945 0.405585 AAAAGCTAGCAAGGCCTCCA 59.594 50.000 18.83 0.00 0.00 3.86
1122 1179 1.068741 GCTCGGACTATACTGGGGTTG 59.931 57.143 0.00 0.00 0.00 3.77
1178 1241 0.745845 CAGAAGCAGGGAATGGACGG 60.746 60.000 0.00 0.00 0.00 4.79
1214 1278 3.945921 ACAGAAGATGACCGACGATAGAA 59.054 43.478 0.00 0.00 41.38 2.10
1216 1280 3.065510 ACACAGAAGATGACCGACGATAG 59.934 47.826 0.00 0.00 46.19 2.08
1226 1290 1.889170 AGCAGTCGACACAGAAGATGA 59.111 47.619 19.50 0.00 0.00 2.92
1248 1447 8.458843 GCACGCACAGGGAAAATAAATATATAT 58.541 33.333 0.00 0.00 0.00 0.86
1251 1450 5.590663 TGCACGCACAGGGAAAATAAATATA 59.409 36.000 0.00 0.00 0.00 0.86
1252 1451 4.400884 TGCACGCACAGGGAAAATAAATAT 59.599 37.500 0.00 0.00 0.00 1.28
1293 1492 9.016438 AGCCCGTTTATTTATTTTCTTCTTGTA 57.984 29.630 0.00 0.00 0.00 2.41
1294 1493 7.812669 CAGCCCGTTTATTTATTTTCTTCTTGT 59.187 33.333 0.00 0.00 0.00 3.16
1295 1494 7.812669 ACAGCCCGTTTATTTATTTTCTTCTTG 59.187 33.333 0.00 0.00 0.00 3.02
1299 1498 6.072342 ACGACAGCCCGTTTATTTATTTTCTT 60.072 34.615 0.00 0.00 40.17 2.52
1301 1500 5.633927 ACGACAGCCCGTTTATTTATTTTC 58.366 37.500 0.00 0.00 40.17 2.29
1419 1660 2.550208 CCAGAACCACCAACACCTAGAC 60.550 54.545 0.00 0.00 0.00 2.59
1437 1678 0.740164 CTCAGCTGTGCAGTAGCCAG 60.740 60.000 14.67 7.92 42.07 4.85
1446 1687 2.435586 ATGTCGGCTCAGCTGTGC 60.436 61.111 28.30 28.30 36.18 4.57
1527 1780 5.293324 TCGCAGCGTATCATTTAAAGTTCAT 59.707 36.000 15.93 0.00 0.00 2.57
1548 1801 5.974300 TCTCAGCGTATCATTATTTTTCGC 58.026 37.500 0.00 0.00 41.96 4.70
1549 1802 8.886080 CAAATCTCAGCGTATCATTATTTTTCG 58.114 33.333 0.00 0.00 0.00 3.46
1550 1803 9.722056 ACAAATCTCAGCGTATCATTATTTTTC 57.278 29.630 0.00 0.00 0.00 2.29
1556 1809 8.699749 CGAATAACAAATCTCAGCGTATCATTA 58.300 33.333 0.00 0.00 0.00 1.90
1557 1810 7.438160 TCGAATAACAAATCTCAGCGTATCATT 59.562 33.333 0.00 0.00 0.00 2.57
1558 1811 6.923508 TCGAATAACAAATCTCAGCGTATCAT 59.076 34.615 0.00 0.00 0.00 2.45
1559 1812 6.198403 GTCGAATAACAAATCTCAGCGTATCA 59.802 38.462 0.00 0.00 0.00 2.15
1560 1813 6.198403 TGTCGAATAACAAATCTCAGCGTATC 59.802 38.462 0.00 0.00 0.00 2.24
1561 1814 6.040247 TGTCGAATAACAAATCTCAGCGTAT 58.960 36.000 0.00 0.00 0.00 3.06
1562 1815 5.404096 TGTCGAATAACAAATCTCAGCGTA 58.596 37.500 0.00 0.00 0.00 4.42
1563 1816 4.242475 TGTCGAATAACAAATCTCAGCGT 58.758 39.130 0.00 0.00 0.00 5.07
1564 1817 4.840401 TGTCGAATAACAAATCTCAGCG 57.160 40.909 0.00 0.00 0.00 5.18
1565 1818 7.851822 TTTTTGTCGAATAACAAATCTCAGC 57.148 32.000 3.32 0.00 45.70 4.26
1619 1872 8.753133 TCATACTCCTATTCCTATATGCTTGTG 58.247 37.037 0.00 0.00 0.00 3.33
1634 1890 4.283467 TGCCAACGCTTATCATACTCCTAT 59.717 41.667 0.00 0.00 35.36 2.57
1637 1893 2.833794 TGCCAACGCTTATCATACTCC 58.166 47.619 0.00 0.00 35.36 3.85
1640 1896 4.036262 TGGAAATGCCAACGCTTATCATAC 59.964 41.667 0.00 0.00 45.87 2.39
1641 1897 4.203226 TGGAAATGCCAACGCTTATCATA 58.797 39.130 0.00 0.00 45.87 2.15
1642 1898 3.023119 TGGAAATGCCAACGCTTATCAT 58.977 40.909 0.00 0.00 45.87 2.45
1643 1899 2.441410 TGGAAATGCCAACGCTTATCA 58.559 42.857 0.00 0.00 45.87 2.15
1754 2012 5.745514 CAGACTGCGGAATAAGAAATGATG 58.254 41.667 0.00 0.00 0.00 3.07
1792 2054 2.154462 AGTTGCGAGCATGCTAAACTT 58.846 42.857 25.85 15.88 35.36 2.66
1793 2055 1.813513 AGTTGCGAGCATGCTAAACT 58.186 45.000 25.85 25.85 35.36 2.66
1794 2056 2.245096 CAAGTTGCGAGCATGCTAAAC 58.755 47.619 22.74 23.06 35.36 2.01
1795 2057 1.199789 CCAAGTTGCGAGCATGCTAAA 59.800 47.619 22.74 12.87 35.36 1.85
1796 2058 0.804364 CCAAGTTGCGAGCATGCTAA 59.196 50.000 22.74 8.96 35.36 3.09
1800 2062 2.180017 GCCCAAGTTGCGAGCATG 59.820 61.111 0.00 0.00 0.00 4.06
1822 2084 2.882137 TGGCGAACCCTTTACTTTCAAG 59.118 45.455 0.00 0.00 33.59 3.02
1848 2110 1.094785 ATTCCACGTGCATTACTGGC 58.905 50.000 10.91 0.00 31.57 4.85
1888 2150 5.544650 ACTAACACAGTAACACCACCATAC 58.455 41.667 0.00 0.00 34.98 2.39
1899 2161 7.557875 ACCCTACCAATAACTAACACAGTAA 57.442 36.000 0.00 0.00 36.04 2.24
1906 2168 4.880120 GGCTGAACCCTACCAATAACTAAC 59.120 45.833 0.00 0.00 0.00 2.34
1992 2259 6.653020 AGCATACAGTTACATTCAGATGGAA 58.347 36.000 0.00 0.00 40.46 3.53
2062 2329 1.755179 GTATGCCATCAGTGCAAGGT 58.245 50.000 0.00 0.00 42.92 3.50
2088 2355 0.882927 TTGTGTAGCCAGCACGAACC 60.883 55.000 0.00 0.00 39.53 3.62
2237 2513 3.691118 CCGTGTCATCCATCAGTCATTTT 59.309 43.478 0.00 0.00 0.00 1.82
2282 2558 1.718757 GCATCCGCCACAATCACCTC 61.719 60.000 0.00 0.00 0.00 3.85
2824 3103 2.674796 AGAACGGGTAGCAGTTGATC 57.325 50.000 15.16 1.42 0.00 2.92
3346 3625 9.783081 TCTCTATGTAAATGCATATGAACATGT 57.217 29.630 18.80 0.00 31.74 3.21
3351 3630 7.814587 CGGTCTCTCTATGTAAATGCATATGAA 59.185 37.037 6.97 0.00 31.74 2.57
3352 3631 7.039714 ACGGTCTCTCTATGTAAATGCATATGA 60.040 37.037 6.97 0.00 31.74 2.15
3371 3650 2.029844 GCTGGCTTGTCACGGTCTC 61.030 63.158 0.00 0.00 0.00 3.36
3372 3651 2.031163 GCTGGCTTGTCACGGTCT 59.969 61.111 0.00 0.00 0.00 3.85
3373 3652 2.280797 TGCTGGCTTGTCACGGTC 60.281 61.111 0.00 0.00 0.00 4.79
3374 3653 2.591715 GTGCTGGCTTGTCACGGT 60.592 61.111 0.00 0.00 0.00 4.83
3392 3671 1.025812 CCTGCGTAAACACAACCCAA 58.974 50.000 0.00 0.00 0.00 4.12
3476 3755 2.822255 GCGCGCCATAACCCTTCA 60.822 61.111 23.24 0.00 0.00 3.02
3477 3756 2.513897 AGCGCGCCATAACCCTTC 60.514 61.111 30.33 0.00 0.00 3.46
3478 3757 2.824041 CAGCGCGCCATAACCCTT 60.824 61.111 30.33 1.73 0.00 3.95
3480 3759 3.876198 CACAGCGCGCCATAACCC 61.876 66.667 30.33 0.00 0.00 4.11
3481 3760 1.714899 AATCACAGCGCGCCATAACC 61.715 55.000 30.33 0.00 0.00 2.85
3482 3761 0.589729 CAATCACAGCGCGCCATAAC 60.590 55.000 30.33 0.00 0.00 1.89
3483 3762 0.742635 TCAATCACAGCGCGCCATAA 60.743 50.000 30.33 12.27 0.00 1.90
3484 3763 0.742635 TTCAATCACAGCGCGCCATA 60.743 50.000 30.33 11.84 0.00 2.74
3485 3764 2.039974 TTCAATCACAGCGCGCCAT 61.040 52.632 30.33 14.16 0.00 4.40
3486 3765 2.667874 TTCAATCACAGCGCGCCA 60.668 55.556 30.33 10.10 0.00 5.69
3487 3766 2.202349 GTTCAATCACAGCGCGCC 60.202 61.111 30.33 10.31 0.00 6.53
3489 3768 0.094216 CTCTGTTCAATCACAGCGCG 59.906 55.000 0.00 0.00 43.51 6.86
3490 3769 0.179205 GCTCTGTTCAATCACAGCGC 60.179 55.000 0.00 0.00 45.51 5.92
3491 3770 1.128136 CAGCTCTGTTCAATCACAGCG 59.872 52.381 0.00 0.00 43.51 5.18
3546 3853 5.533528 TGCATAACCCAAGAGAATGATCATG 59.466 40.000 9.46 0.00 0.00 3.07
3570 3879 1.847088 GGAGGAGAGGGCCAGTTTTAT 59.153 52.381 6.18 0.00 0.00 1.40
3575 3884 4.423209 GGGGAGGAGAGGGCCAGT 62.423 72.222 6.18 0.00 0.00 4.00
3578 3887 2.674672 TTATCGGGGAGGAGAGGGCC 62.675 65.000 0.00 0.00 0.00 5.80
3579 3888 0.763223 TTTATCGGGGAGGAGAGGGC 60.763 60.000 0.00 0.00 0.00 5.19
3580 3889 1.802553 TTTTATCGGGGAGGAGAGGG 58.197 55.000 0.00 0.00 0.00 4.30
3581 3890 3.244596 GGATTTTTATCGGGGAGGAGAGG 60.245 52.174 0.00 0.00 0.00 3.69
3582 3891 3.244596 GGGATTTTTATCGGGGAGGAGAG 60.245 52.174 0.00 0.00 0.00 3.20
3583 3892 2.709397 GGGATTTTTATCGGGGAGGAGA 59.291 50.000 0.00 0.00 0.00 3.71
3584 3893 2.224793 GGGGATTTTTATCGGGGAGGAG 60.225 54.545 0.00 0.00 0.00 3.69
3585 3894 1.778484 GGGGATTTTTATCGGGGAGGA 59.222 52.381 0.00 0.00 0.00 3.71
3586 3895 1.203013 GGGGGATTTTTATCGGGGAGG 60.203 57.143 0.00 0.00 0.00 4.30
3587 3896 1.780919 AGGGGGATTTTTATCGGGGAG 59.219 52.381 0.00 0.00 0.00 4.30
3588 3897 1.778484 GAGGGGGATTTTTATCGGGGA 59.222 52.381 0.00 0.00 0.00 4.81
3589 3898 1.780919 AGAGGGGGATTTTTATCGGGG 59.219 52.381 0.00 0.00 0.00 5.73
3590 3899 3.595190 AAGAGGGGGATTTTTATCGGG 57.405 47.619 0.00 0.00 0.00 5.14
3591 3900 5.186992 ACAAAAAGAGGGGGATTTTTATCGG 59.813 40.000 0.00 0.00 36.68 4.18
3592 3901 6.099341 CACAAAAAGAGGGGGATTTTTATCG 58.901 40.000 0.00 0.00 36.68 2.92
3593 3902 6.013725 ACCACAAAAAGAGGGGGATTTTTATC 60.014 38.462 0.00 0.00 36.68 1.75
3594 3903 5.849475 ACCACAAAAAGAGGGGGATTTTTAT 59.151 36.000 0.00 0.00 36.68 1.40
3595 3904 5.071115 CACCACAAAAAGAGGGGGATTTTTA 59.929 40.000 0.00 0.00 36.68 1.52
3614 3923 6.622896 GCCAAAATACATCAGTTCTACACCAC 60.623 42.308 0.00 0.00 0.00 4.16
3615 3924 5.414454 GCCAAAATACATCAGTTCTACACCA 59.586 40.000 0.00 0.00 0.00 4.17
3616 3925 5.414454 TGCCAAAATACATCAGTTCTACACC 59.586 40.000 0.00 0.00 0.00 4.16
3617 3926 6.494893 TGCCAAAATACATCAGTTCTACAC 57.505 37.500 0.00 0.00 0.00 2.90
3692 4158 9.709600 GCTAATCTAAAGTGAATAAGAAGCAAC 57.290 33.333 0.00 0.00 0.00 4.17
3753 4219 7.705752 GGCAGGACAAAATAGAAGTAGTACTAC 59.294 40.741 23.03 23.03 36.35 2.73
3755 4221 6.212791 TGGCAGGACAAAATAGAAGTAGTACT 59.787 38.462 0.00 0.00 0.00 2.73
3756 4222 6.403878 TGGCAGGACAAAATAGAAGTAGTAC 58.596 40.000 0.00 0.00 0.00 2.73
3757 4223 6.614694 TGGCAGGACAAAATAGAAGTAGTA 57.385 37.500 0.00 0.00 0.00 1.82
3758 4224 5.499004 TGGCAGGACAAAATAGAAGTAGT 57.501 39.130 0.00 0.00 0.00 2.73
3759 4225 6.183360 CCATTGGCAGGACAAAATAGAAGTAG 60.183 42.308 0.00 0.00 33.48 2.57
3760 4226 5.652014 CCATTGGCAGGACAAAATAGAAGTA 59.348 40.000 0.00 0.00 33.48 2.24
3762 4228 4.706476 TCCATTGGCAGGACAAAATAGAAG 59.294 41.667 0.00 0.00 33.48 2.85
3763 4229 4.671831 TCCATTGGCAGGACAAAATAGAA 58.328 39.130 0.00 0.00 33.48 2.10
3764 4230 4.018506 TCTCCATTGGCAGGACAAAATAGA 60.019 41.667 0.00 0.00 33.48 1.98
3765 4231 4.272489 TCTCCATTGGCAGGACAAAATAG 58.728 43.478 0.00 0.00 33.48 1.73
3766 4232 4.314522 TCTCCATTGGCAGGACAAAATA 57.685 40.909 0.00 0.00 33.48 1.40
3779 4255 5.181811 TGTCTGCACTATTGTTTCTCCATTG 59.818 40.000 0.00 0.00 0.00 2.82
3880 4357 5.097742 TGGACTTCTCTCTTGTGTTTTGA 57.902 39.130 0.00 0.00 0.00 2.69
3918 5646 9.014297 GGGTTGAATCTTAGAGAAATTGAAGAA 57.986 33.333 0.00 0.00 32.00 2.52
3923 5651 5.880332 TCGGGGTTGAATCTTAGAGAAATTG 59.120 40.000 0.00 0.00 0.00 2.32
3929 5657 3.887621 TGTCGGGGTTGAATCTTAGAG 57.112 47.619 0.00 0.00 0.00 2.43
3935 5663 5.277345 CGATTTTAGATGTCGGGGTTGAATC 60.277 44.000 0.00 0.00 0.00 2.52
3973 5701 5.104374 CGTAGCCGGTTTTGATAGTTTAGA 58.896 41.667 1.90 0.00 0.00 2.10
3974 5702 5.005107 GTCGTAGCCGGTTTTGATAGTTTAG 59.995 44.000 1.90 0.00 33.95 1.85
3976 5704 3.681417 GTCGTAGCCGGTTTTGATAGTTT 59.319 43.478 1.90 0.00 33.95 2.66
3977 5705 3.056322 AGTCGTAGCCGGTTTTGATAGTT 60.056 43.478 1.90 0.00 33.95 2.24
3978 5706 2.494870 AGTCGTAGCCGGTTTTGATAGT 59.505 45.455 1.90 0.00 33.95 2.12
3979 5707 3.114065 GAGTCGTAGCCGGTTTTGATAG 58.886 50.000 1.90 0.00 33.95 2.08
3981 5709 1.274167 TGAGTCGTAGCCGGTTTTGAT 59.726 47.619 1.90 0.00 33.95 2.57
3982 5710 0.675083 TGAGTCGTAGCCGGTTTTGA 59.325 50.000 1.90 0.00 33.95 2.69
4011 5769 1.149627 CAAAACCAGGGTCACGGGA 59.850 57.895 0.00 0.00 37.90 5.14
4045 5803 0.325933 TGCTGACATGGCTGCTTACT 59.674 50.000 28.08 0.00 34.32 2.24
4048 5806 1.263356 AAATGCTGACATGGCTGCTT 58.737 45.000 28.08 20.47 36.36 3.91
4050 5808 1.355971 CAAAATGCTGACATGGCTGC 58.644 50.000 22.61 22.61 36.36 5.25
4051 5809 2.004583 CCAAAATGCTGACATGGCTG 57.995 50.000 0.00 0.00 36.36 4.85
4064 5822 1.422531 TTTGCCTGGACTGCCAAAAT 58.577 45.000 0.00 0.00 45.41 1.82
4221 5980 4.815040 TGCATTTTGAGCCACAATTTTG 57.185 36.364 0.00 0.00 38.36 2.44
4229 5988 4.066490 CCTTGAAATTGCATTTTGAGCCA 58.934 39.130 11.11 0.97 31.47 4.75
4267 6026 9.078990 GAAGCAATAGCCCTTTTATTATTAGGT 57.921 33.333 0.00 0.00 43.56 3.08
4268 6027 9.301897 AGAAGCAATAGCCCTTTTATTATTAGG 57.698 33.333 0.00 0.00 43.56 2.69
4270 6029 9.077885 CCAGAAGCAATAGCCCTTTTATTATTA 57.922 33.333 0.00 0.00 43.56 0.98
4271 6030 7.471959 GCCAGAAGCAATAGCCCTTTTATTATT 60.472 37.037 0.00 0.00 43.56 1.40
4272 6031 6.015095 GCCAGAAGCAATAGCCCTTTTATTAT 60.015 38.462 0.00 0.00 43.56 1.28
4273 6032 5.301805 GCCAGAAGCAATAGCCCTTTTATTA 59.698 40.000 0.00 0.00 43.56 0.98
4274 6033 4.100035 GCCAGAAGCAATAGCCCTTTTATT 59.900 41.667 0.00 0.00 43.56 1.40
4275 6034 3.638627 GCCAGAAGCAATAGCCCTTTTAT 59.361 43.478 0.00 0.00 43.56 1.40
4276 6035 3.023832 GCCAGAAGCAATAGCCCTTTTA 58.976 45.455 0.00 0.00 43.56 1.52
4277 6036 1.827344 GCCAGAAGCAATAGCCCTTTT 59.173 47.619 0.00 0.00 43.56 2.27
4278 6037 1.478631 GCCAGAAGCAATAGCCCTTT 58.521 50.000 0.00 0.00 43.56 3.11
4279 6038 0.749454 CGCCAGAAGCAATAGCCCTT 60.749 55.000 0.00 0.00 44.04 3.95
4280 6039 1.153086 CGCCAGAAGCAATAGCCCT 60.153 57.895 0.00 0.00 44.04 5.19
4281 6040 0.536006 ATCGCCAGAAGCAATAGCCC 60.536 55.000 0.00 0.00 44.04 5.19
4282 6041 1.801178 GTATCGCCAGAAGCAATAGCC 59.199 52.381 0.00 0.00 44.04 3.93
4283 6042 1.457303 CGTATCGCCAGAAGCAATAGC 59.543 52.381 0.00 0.00 44.04 2.97
4284 6043 2.726760 GACGTATCGCCAGAAGCAATAG 59.273 50.000 0.00 0.00 44.04 1.73
4285 6044 2.100087 TGACGTATCGCCAGAAGCAATA 59.900 45.455 0.00 0.00 44.04 1.90
4286 6045 1.134818 TGACGTATCGCCAGAAGCAAT 60.135 47.619 0.00 0.00 44.04 3.56
4287 6046 0.245266 TGACGTATCGCCAGAAGCAA 59.755 50.000 0.00 0.00 44.04 3.91
4288 6047 0.457853 GTGACGTATCGCCAGAAGCA 60.458 55.000 0.00 0.00 44.04 3.91
4289 6048 1.472276 CGTGACGTATCGCCAGAAGC 61.472 60.000 0.00 0.00 38.52 3.86
4290 6049 0.866061 CCGTGACGTATCGCCAGAAG 60.866 60.000 3.64 0.00 31.08 2.85
4291 6050 1.138036 CCGTGACGTATCGCCAGAA 59.862 57.895 3.64 0.00 31.08 3.02
4292 6051 1.307355 TTCCGTGACGTATCGCCAGA 61.307 55.000 3.64 0.00 31.08 3.86
4293 6052 0.457166 TTTCCGTGACGTATCGCCAG 60.457 55.000 3.64 0.00 31.08 4.85
4294 6053 0.173935 ATTTCCGTGACGTATCGCCA 59.826 50.000 3.64 0.00 31.08 5.69
4295 6054 1.005347 CAATTTCCGTGACGTATCGCC 60.005 52.381 3.64 0.00 31.08 5.54
4296 6055 1.591394 GCAATTTCCGTGACGTATCGC 60.591 52.381 3.64 0.00 0.00 4.58
4297 6056 1.005347 GGCAATTTCCGTGACGTATCG 60.005 52.381 3.64 0.00 0.00 2.92
4298 6057 1.329599 GGGCAATTTCCGTGACGTATC 59.670 52.381 3.64 0.00 0.00 2.24
4299 6058 1.375551 GGGCAATTTCCGTGACGTAT 58.624 50.000 3.64 0.00 0.00 3.06
4300 6059 0.674269 GGGGCAATTTCCGTGACGTA 60.674 55.000 3.64 0.00 0.00 3.57
4301 6060 1.969589 GGGGCAATTTCCGTGACGT 60.970 57.895 3.64 0.00 0.00 4.34
4302 6061 2.696759 GGGGGCAATTTCCGTGACG 61.697 63.158 0.00 0.00 0.00 4.35
4303 6062 3.284336 GGGGGCAATTTCCGTGAC 58.716 61.111 0.00 0.00 0.00 3.67
4317 6076 7.761608 TGGGTAATATCTTACAATTTAGGGGG 58.238 38.462 3.69 0.00 39.23 5.40
4318 6077 9.074576 GTTGGGTAATATCTTACAATTTAGGGG 57.925 37.037 3.69 0.00 39.23 4.79
4319 6078 9.635404 TGTTGGGTAATATCTTACAATTTAGGG 57.365 33.333 3.69 0.00 39.23 3.53
4323 6082 9.816354 GCATTGTTGGGTAATATCTTACAATTT 57.184 29.630 3.69 0.00 39.23 1.82
4324 6083 8.421002 GGCATTGTTGGGTAATATCTTACAATT 58.579 33.333 3.69 0.00 39.23 2.32
4325 6084 7.563188 TGGCATTGTTGGGTAATATCTTACAAT 59.437 33.333 3.69 0.00 39.23 2.71
4326 6085 6.892456 TGGCATTGTTGGGTAATATCTTACAA 59.108 34.615 3.69 0.00 39.23 2.41
4327 6086 6.320164 GTGGCATTGTTGGGTAATATCTTACA 59.680 38.462 3.69 0.00 39.23 2.41
4328 6087 6.238925 GGTGGCATTGTTGGGTAATATCTTAC 60.239 42.308 0.00 0.00 37.16 2.34
4329 6088 5.830991 GGTGGCATTGTTGGGTAATATCTTA 59.169 40.000 0.00 0.00 0.00 2.10
4330 6089 4.649218 GGTGGCATTGTTGGGTAATATCTT 59.351 41.667 0.00 0.00 0.00 2.40
4331 6090 4.079212 AGGTGGCATTGTTGGGTAATATCT 60.079 41.667 0.00 0.00 0.00 1.98
4332 6091 4.215109 AGGTGGCATTGTTGGGTAATATC 58.785 43.478 0.00 0.00 0.00 1.63
4333 6092 4.264373 AGGTGGCATTGTTGGGTAATAT 57.736 40.909 0.00 0.00 0.00 1.28
4334 6093 3.748645 AGGTGGCATTGTTGGGTAATA 57.251 42.857 0.00 0.00 0.00 0.98
4335 6094 2.621556 AGGTGGCATTGTTGGGTAAT 57.378 45.000 0.00 0.00 0.00 1.89
4336 6095 2.377193 AGTAGGTGGCATTGTTGGGTAA 59.623 45.455 0.00 0.00 0.00 2.85
4337 6096 1.989586 AGTAGGTGGCATTGTTGGGTA 59.010 47.619 0.00 0.00 0.00 3.69
4338 6097 0.777446 AGTAGGTGGCATTGTTGGGT 59.223 50.000 0.00 0.00 0.00 4.51
4339 6098 1.463674 GAGTAGGTGGCATTGTTGGG 58.536 55.000 0.00 0.00 0.00 4.12
4340 6099 1.463674 GGAGTAGGTGGCATTGTTGG 58.536 55.000 0.00 0.00 0.00 3.77
4341 6100 1.004745 AGGGAGTAGGTGGCATTGTTG 59.995 52.381 0.00 0.00 0.00 3.33
4342 6101 1.282157 GAGGGAGTAGGTGGCATTGTT 59.718 52.381 0.00 0.00 0.00 2.83
4343 6102 0.912486 GAGGGAGTAGGTGGCATTGT 59.088 55.000 0.00 0.00 0.00 2.71
4344 6103 0.181350 GGAGGGAGTAGGTGGCATTG 59.819 60.000 0.00 0.00 0.00 2.82
4345 6104 1.338136 CGGAGGGAGTAGGTGGCATT 61.338 60.000 0.00 0.00 0.00 3.56
4346 6105 1.762460 CGGAGGGAGTAGGTGGCAT 60.762 63.158 0.00 0.00 0.00 4.40
4347 6106 2.363795 CGGAGGGAGTAGGTGGCA 60.364 66.667 0.00 0.00 0.00 4.92
4348 6107 2.363925 ACGGAGGGAGTAGGTGGC 60.364 66.667 0.00 0.00 0.00 5.01
4349 6108 1.757340 GGACGGAGGGAGTAGGTGG 60.757 68.421 0.00 0.00 0.00 4.61
4350 6109 1.757340 GGGACGGAGGGAGTAGGTG 60.757 68.421 0.00 0.00 0.00 4.00
4351 6110 1.591280 ATGGGACGGAGGGAGTAGGT 61.591 60.000 0.00 0.00 0.00 3.08
4352 6111 0.481567 TATGGGACGGAGGGAGTAGG 59.518 60.000 0.00 0.00 0.00 3.18
4353 6112 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
4354 6113 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4355 6114 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4356 6115 4.406003 CCTTATATTATGGGACGGAGGGAG 59.594 50.000 0.00 0.00 0.00 4.30
4357 6116 4.359105 CCTTATATTATGGGACGGAGGGA 58.641 47.826 0.00 0.00 0.00 4.20
4358 6117 3.454812 CCCTTATATTATGGGACGGAGGG 59.545 52.174 0.00 0.00 43.93 4.30
4359 6118 4.081087 CACCCTTATATTATGGGACGGAGG 60.081 50.000 11.36 0.00 43.93 4.30
4360 6119 4.530946 ACACCCTTATATTATGGGACGGAG 59.469 45.833 11.36 1.19 43.93 4.63
4361 6120 4.495565 ACACCCTTATATTATGGGACGGA 58.504 43.478 11.36 0.00 43.93 4.69
4362 6121 4.903045 ACACCCTTATATTATGGGACGG 57.097 45.455 11.36 4.60 43.93 4.79
4363 6122 6.292923 TCAAACACCCTTATATTATGGGACG 58.707 40.000 11.36 5.68 43.93 4.79
4364 6123 6.206829 GCTCAAACACCCTTATATTATGGGAC 59.793 42.308 11.36 0.00 43.93 4.46
4365 6124 6.303839 GCTCAAACACCCTTATATTATGGGA 58.696 40.000 11.36 0.00 43.93 4.37
4366 6125 5.181245 CGCTCAAACACCCTTATATTATGGG 59.819 44.000 0.00 0.00 45.99 4.00
4367 6126 5.334879 GCGCTCAAACACCCTTATATTATGG 60.335 44.000 0.00 0.00 0.00 2.74
4368 6127 5.238432 TGCGCTCAAACACCCTTATATTATG 59.762 40.000 9.73 0.00 0.00 1.90
4369 6128 5.238650 GTGCGCTCAAACACCCTTATATTAT 59.761 40.000 9.73 0.00 0.00 1.28
4370 6129 4.573201 GTGCGCTCAAACACCCTTATATTA 59.427 41.667 9.73 0.00 0.00 0.98
4371 6130 3.377172 GTGCGCTCAAACACCCTTATATT 59.623 43.478 9.73 0.00 0.00 1.28
4372 6131 2.943033 GTGCGCTCAAACACCCTTATAT 59.057 45.455 9.73 0.00 0.00 0.86
4373 6132 2.027561 AGTGCGCTCAAACACCCTTATA 60.028 45.455 9.73 0.00 37.51 0.98
4374 6133 1.165270 GTGCGCTCAAACACCCTTAT 58.835 50.000 9.73 0.00 0.00 1.73
4375 6134 0.107831 AGTGCGCTCAAACACCCTTA 59.892 50.000 9.73 0.00 37.51 2.69
4376 6135 0.107831 TAGTGCGCTCAAACACCCTT 59.892 50.000 9.73 0.00 37.51 3.95
4377 6136 0.320771 CTAGTGCGCTCAAACACCCT 60.321 55.000 9.73 0.00 37.51 4.34
4378 6137 0.602905 ACTAGTGCGCTCAAACACCC 60.603 55.000 9.73 0.00 37.51 4.61
4379 6138 0.512952 CACTAGTGCGCTCAAACACC 59.487 55.000 10.54 0.00 37.51 4.16
4380 6139 1.497991 TCACTAGTGCGCTCAAACAC 58.502 50.000 18.45 0.00 37.05 3.32
4381 6140 2.455674 ATCACTAGTGCGCTCAAACA 57.544 45.000 18.45 0.00 0.00 2.83
4382 6141 4.921470 TTTATCACTAGTGCGCTCAAAC 57.079 40.909 18.45 0.00 0.00 2.93
4383 6142 5.613795 CGTTTTTATCACTAGTGCGCTCAAA 60.614 40.000 18.45 9.83 0.00 2.69
4384 6143 4.143200 CGTTTTTATCACTAGTGCGCTCAA 60.143 41.667 18.45 5.39 0.00 3.02
4385 6144 3.366724 CGTTTTTATCACTAGTGCGCTCA 59.633 43.478 18.45 0.37 0.00 4.26
4386 6145 3.781280 GCGTTTTTATCACTAGTGCGCTC 60.781 47.826 24.86 4.74 39.35 5.03
4387 6146 2.093783 GCGTTTTTATCACTAGTGCGCT 59.906 45.455 24.86 4.58 39.35 5.92
4388 6147 2.093783 AGCGTTTTTATCACTAGTGCGC 59.906 45.455 24.81 24.81 42.19 6.09
4389 6148 3.612860 AGAGCGTTTTTATCACTAGTGCG 59.387 43.478 18.45 14.19 0.00 5.34
4390 6149 5.532025 AAGAGCGTTTTTATCACTAGTGC 57.468 39.130 18.45 2.91 0.00 4.40
4416 6175 8.692710 CCTACGTCCCATAATATAAGAGCATAA 58.307 37.037 0.00 0.00 0.00 1.90
4417 6176 7.287005 CCCTACGTCCCATAATATAAGAGCATA 59.713 40.741 0.00 0.00 0.00 3.14
4418 6177 6.098409 CCCTACGTCCCATAATATAAGAGCAT 59.902 42.308 0.00 0.00 0.00 3.79
4419 6178 5.421056 CCCTACGTCCCATAATATAAGAGCA 59.579 44.000 0.00 0.00 0.00 4.26
4420 6179 5.655532 TCCCTACGTCCCATAATATAAGAGC 59.344 44.000 0.00 0.00 0.00 4.09
4421 6180 6.890814 ACTCCCTACGTCCCATAATATAAGAG 59.109 42.308 0.00 0.00 0.00 2.85
4422 6181 6.797707 ACTCCCTACGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
4423 6182 8.763984 ATACTCCCTACGTCCCATAATATAAG 57.236 38.462 0.00 0.00 0.00 1.73
4426 6185 9.725206 AATTATACTCCCTACGTCCCATAATAT 57.275 33.333 0.00 0.00 0.00 1.28
4427 6186 8.974238 CAATTATACTCCCTACGTCCCATAATA 58.026 37.037 0.00 0.00 0.00 0.98
4428 6187 7.676893 TCAATTATACTCCCTACGTCCCATAAT 59.323 37.037 0.00 0.00 0.00 1.28
4429 6188 7.011994 TCAATTATACTCCCTACGTCCCATAA 58.988 38.462 0.00 0.00 0.00 1.90
4430 6189 6.554784 TCAATTATACTCCCTACGTCCCATA 58.445 40.000 0.00 0.00 0.00 2.74
4431 6190 5.399991 TCAATTATACTCCCTACGTCCCAT 58.600 41.667 0.00 0.00 0.00 4.00
4432 6191 4.806892 TCAATTATACTCCCTACGTCCCA 58.193 43.478 0.00 0.00 0.00 4.37
4433 6192 5.997384 ATCAATTATACTCCCTACGTCCC 57.003 43.478 0.00 0.00 0.00 4.46
4449 6208 9.849166 CCCTGTGTAAAACGTTATTTATCAATT 57.151 29.630 0.00 0.00 0.00 2.32
4450 6209 8.463607 CCCCTGTGTAAAACGTTATTTATCAAT 58.536 33.333 0.00 0.00 0.00 2.57
4451 6210 7.664731 TCCCCTGTGTAAAACGTTATTTATCAA 59.335 33.333 0.00 0.00 0.00 2.57
4452 6211 7.166851 TCCCCTGTGTAAAACGTTATTTATCA 58.833 34.615 0.00 1.62 0.00 2.15
4453 6212 7.614124 TCCCCTGTGTAAAACGTTATTTATC 57.386 36.000 0.00 0.00 0.00 1.75
4454 6213 7.999450 TTCCCCTGTGTAAAACGTTATTTAT 57.001 32.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.