Multiple sequence alignment - TraesCS3D01G249000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G249000 chr3D 100.000 4584 0 0 1 4584 348162083 348157500 0.000000e+00 8466.0
1 TraesCS3D01G249000 chr3A 92.648 4162 192 35 473 4584 467156575 467152478 0.000000e+00 5886.0
2 TraesCS3D01G249000 chr3A 88.966 145 9 2 333 470 467332627 467332483 6.100000e-39 172.0
3 TraesCS3D01G249000 chr3B 92.518 4197 172 62 430 4584 447984596 447980500 0.000000e+00 5880.0
4 TraesCS3D01G249000 chr3B 87.906 339 33 7 4 338 738127787 738127453 4.300000e-105 392.0
5 TraesCS3D01G249000 chr6B 90.000 450 23 10 2075 2522 659283571 659283142 3.100000e-156 562.0
6 TraesCS3D01G249000 chr6B 86.550 342 40 3 1 336 509522104 509521763 5.600000e-99 372.0
7 TraesCS3D01G249000 chr5B 90.000 450 23 10 2075 2522 667222328 667221899 3.100000e-156 562.0
8 TraesCS3D01G249000 chr1B 89.933 447 22 11 2075 2519 2838675 2839100 5.180000e-154 555.0
9 TraesCS3D01G249000 chr1B 89.709 447 24 11 2075 2519 638545279 638545705 6.700000e-153 551.0
10 TraesCS3D01G249000 chr1B 89.404 453 20 15 2072 2519 609697544 609697973 3.120000e-151 545.0
11 TraesCS3D01G249000 chr1B 91.892 259 9 4 2264 2522 627870980 627870734 7.300000e-93 351.0
12 TraesCS3D01G249000 chr1B 85.185 54 7 1 4409 4462 302512084 302512136 2.000000e-03 54.7
13 TraesCS3D01G249000 chr7D 88.696 345 26 5 6 338 414430384 414430727 4.270000e-110 409.0
14 TraesCS3D01G249000 chr7D 88.338 343 30 8 4 336 495156702 495156360 1.990000e-108 403.0
15 TraesCS3D01G249000 chr7D 86.842 342 36 8 4 341 605537410 605537746 1.560000e-99 374.0
16 TraesCS3D01G249000 chr4B 86.826 334 37 6 4 334 661308613 661308284 2.610000e-97 366.0
17 TraesCS3D01G249000 chr1A 86.647 337 37 7 4 337 535305817 535305486 2.610000e-97 366.0
18 TraesCS3D01G249000 chr2D 86.136 339 37 7 4 336 12769916 12770250 1.570000e-94 357.0
19 TraesCS3D01G249000 chr2B 91.892 259 9 4 2264 2522 745547366 745547120 7.300000e-93 351.0
20 TraesCS3D01G249000 chr2B 94.737 38 2 0 4409 4446 405231941 405231978 4.950000e-05 60.2
21 TraesCS3D01G249000 chrUn 84.795 342 43 9 4 341 74721777 74722113 7.350000e-88 335.0
22 TraesCS3D01G249000 chr4D 97.143 35 1 0 4418 4452 506075432 506075398 4.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G249000 chr3D 348157500 348162083 4583 True 8466 8466 100.000 1 4584 1 chr3D.!!$R1 4583
1 TraesCS3D01G249000 chr3A 467152478 467156575 4097 True 5886 5886 92.648 473 4584 1 chr3A.!!$R1 4111
2 TraesCS3D01G249000 chr3B 447980500 447984596 4096 True 5880 5880 92.518 430 4584 1 chr3B.!!$R1 4154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.034863 ACTCTCGTCCTCCTCCAGTC 60.035 60.0 0.0 0.0 0.00 3.51 F
358 359 0.034960 CTCTCGTCCTCCTCCAGTCA 60.035 60.0 0.0 0.0 0.00 3.41 F
500 509 0.179029 AACGGTGCAAGTAGCCAAGT 60.179 50.0 0.0 0.0 44.83 3.16 F
501 510 0.682852 ACGGTGCAAGTAGCCAAGTA 59.317 50.0 0.0 0.0 44.83 2.24 F
1442 1463 1.035932 CCCCCTTGCTCATGCTTCAG 61.036 60.0 0.0 0.0 40.48 3.02 F
2003 2045 0.243365 TTGCACGCCCAAGCTTATTG 59.757 50.0 0.0 0.0 36.60 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1405 1.671379 GTTTCGTCTGGGCCAGGAC 60.671 63.158 32.23 25.03 31.51 3.85 R
1526 1547 1.933812 TCCACCTCCCCCAATTCCC 60.934 63.158 0.00 0.00 0.00 3.97 R
1722 1764 2.126071 ACCACGCGTGAATCTCCG 60.126 61.111 39.10 22.60 0.00 4.63 R
1740 1782 3.003173 TCCTTCCCACGGCAGAGG 61.003 66.667 0.00 0.00 0.00 3.69 R
2971 3026 0.987294 ACTACCAGAGCCAGTTGCAT 59.013 50.000 0.00 0.00 44.83 3.96 R
3626 3693 0.810016 AGACTAGCGGACGAAACTCC 59.190 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.102113 CCAAGGGCAAGGACAAGG 57.898 61.111 0.00 0.00 0.00 3.61
38 39 2.278330 CCAAGGGCAAGGACAAGGC 61.278 63.158 0.00 0.00 0.00 4.35
42 43 3.056328 GGCAAGGACAAGGCCGAC 61.056 66.667 0.00 0.00 38.04 4.79
43 44 3.423154 GCAAGGACAAGGCCGACG 61.423 66.667 0.00 0.00 0.00 5.12
44 45 2.342279 CAAGGACAAGGCCGACGA 59.658 61.111 0.00 0.00 0.00 4.20
45 46 2.027625 CAAGGACAAGGCCGACGAC 61.028 63.158 0.00 0.00 0.00 4.34
46 47 3.569049 AAGGACAAGGCCGACGACG 62.569 63.158 0.00 0.00 39.43 5.12
47 48 4.353437 GGACAAGGCCGACGACGT 62.353 66.667 0.00 0.00 37.88 4.34
48 49 2.804090 GACAAGGCCGACGACGTC 60.804 66.667 18.04 18.04 37.88 4.34
49 50 3.264866 GACAAGGCCGACGACGTCT 62.265 63.158 24.36 4.90 37.88 4.18
50 51 1.915614 GACAAGGCCGACGACGTCTA 61.916 60.000 24.36 0.00 37.88 2.59
51 52 1.226323 CAAGGCCGACGACGTCTAG 60.226 63.158 24.36 16.64 37.88 2.43
52 53 2.404995 AAGGCCGACGACGTCTAGG 61.405 63.158 24.36 19.52 37.88 3.02
53 54 3.885521 GGCCGACGACGTCTAGGG 61.886 72.222 24.36 18.86 37.88 3.53
54 55 4.549516 GCCGACGACGTCTAGGGC 62.550 72.222 23.47 23.47 37.88 5.19
55 56 3.129502 CCGACGACGTCTAGGGCA 61.130 66.667 24.36 0.00 37.88 5.36
56 57 2.403987 CGACGACGTCTAGGGCAG 59.596 66.667 24.36 4.53 34.56 4.85
57 58 2.102553 GACGACGTCTAGGGCAGC 59.897 66.667 20.52 0.00 0.00 5.25
58 59 3.736482 GACGACGTCTAGGGCAGCG 62.736 68.421 20.52 0.00 0.00 5.18
59 60 3.812019 CGACGTCTAGGGCAGCGT 61.812 66.667 14.70 0.00 38.92 5.07
60 61 2.202623 GACGTCTAGGGCAGCGTG 60.203 66.667 8.70 0.00 37.21 5.34
61 62 4.436998 ACGTCTAGGGCAGCGTGC 62.437 66.667 1.92 1.92 44.08 5.34
89 90 3.977244 CAGGCGGGCGCAAACTTT 61.977 61.111 10.83 0.00 44.11 2.66
90 91 3.223589 AGGCGGGCGCAAACTTTT 61.224 55.556 10.83 0.00 44.11 2.27
91 92 2.279851 GGCGGGCGCAAACTTTTT 60.280 55.556 10.83 0.00 44.11 1.94
126 127 6.745116 AGTTAATGTTTAAGTGGACTTTGGC 58.255 36.000 0.00 0.00 37.40 4.52
127 128 4.600692 AATGTTTAAGTGGACTTTGGCC 57.399 40.909 0.00 0.00 37.40 5.36
128 129 1.950909 TGTTTAAGTGGACTTTGGCCG 59.049 47.619 0.00 0.00 37.40 6.13
129 130 1.268625 GTTTAAGTGGACTTTGGCCGG 59.731 52.381 0.00 0.00 37.40 6.13
130 131 0.891904 TTAAGTGGACTTTGGCCGGC 60.892 55.000 21.18 21.18 37.40 6.13
133 134 4.572571 TGGACTTTGGCCGGCGTT 62.573 61.111 22.54 1.31 0.00 4.84
134 135 3.292159 GGACTTTGGCCGGCGTTT 61.292 61.111 22.54 1.74 0.00 3.60
135 136 1.967494 GGACTTTGGCCGGCGTTTA 60.967 57.895 22.54 3.46 0.00 2.01
136 137 1.517210 GGACTTTGGCCGGCGTTTAA 61.517 55.000 22.54 10.17 0.00 1.52
137 138 0.386352 GACTTTGGCCGGCGTTTAAC 60.386 55.000 22.54 5.65 0.00 2.01
138 139 1.081041 CTTTGGCCGGCGTTTAACC 60.081 57.895 22.54 4.79 0.00 2.85
145 146 2.670592 GGCGTTTAACCGGCCACT 60.671 61.111 7.79 0.00 46.50 4.00
146 147 2.263021 GGCGTTTAACCGGCCACTT 61.263 57.895 7.79 0.00 46.50 3.16
147 148 0.954938 GGCGTTTAACCGGCCACTTA 60.955 55.000 7.79 0.00 46.50 2.24
148 149 1.089112 GCGTTTAACCGGCCACTTAT 58.911 50.000 0.00 0.00 0.00 1.73
149 150 1.202098 GCGTTTAACCGGCCACTTATG 60.202 52.381 0.00 0.00 0.00 1.90
150 151 2.078392 CGTTTAACCGGCCACTTATGT 58.922 47.619 0.00 0.00 0.00 2.29
151 152 2.485038 CGTTTAACCGGCCACTTATGTT 59.515 45.455 0.00 0.00 0.00 2.71
152 153 3.058085 CGTTTAACCGGCCACTTATGTTT 60.058 43.478 0.00 0.00 0.00 2.83
153 154 4.153835 CGTTTAACCGGCCACTTATGTTTA 59.846 41.667 0.00 0.00 0.00 2.01
154 155 5.163733 CGTTTAACCGGCCACTTATGTTTAT 60.164 40.000 0.00 0.00 0.00 1.40
155 156 6.623331 CGTTTAACCGGCCACTTATGTTTATT 60.623 38.462 0.00 0.00 0.00 1.40
156 157 6.837471 TTAACCGGCCACTTATGTTTATTT 57.163 33.333 0.00 0.00 0.00 1.40
157 158 7.934855 TTAACCGGCCACTTATGTTTATTTA 57.065 32.000 0.00 0.00 0.00 1.40
158 159 8.522542 TTAACCGGCCACTTATGTTTATTTAT 57.477 30.769 0.00 0.00 0.00 1.40
159 160 6.385649 ACCGGCCACTTATGTTTATTTATG 57.614 37.500 0.00 0.00 0.00 1.90
160 161 5.889289 ACCGGCCACTTATGTTTATTTATGT 59.111 36.000 0.00 0.00 0.00 2.29
161 162 6.378848 ACCGGCCACTTATGTTTATTTATGTT 59.621 34.615 0.00 0.00 0.00 2.71
162 163 7.093684 ACCGGCCACTTATGTTTATTTATGTTT 60.094 33.333 0.00 0.00 0.00 2.83
163 164 8.407064 CCGGCCACTTATGTTTATTTATGTTTA 58.593 33.333 2.24 0.00 0.00 2.01
164 165 9.959749 CGGCCACTTATGTTTATTTATGTTTAT 57.040 29.630 2.24 0.00 0.00 1.40
196 197 4.569279 TTTTTCTCCACGCAGGCA 57.431 50.000 0.00 0.00 37.29 4.75
197 198 2.029743 TTTTTCTCCACGCAGGCAC 58.970 52.632 0.00 0.00 37.29 5.01
198 199 0.749818 TTTTTCTCCACGCAGGCACA 60.750 50.000 0.00 0.00 37.29 4.57
199 200 0.537143 TTTTCTCCACGCAGGCACAT 60.537 50.000 0.00 0.00 37.29 3.21
200 201 0.537143 TTTCTCCACGCAGGCACATT 60.537 50.000 0.00 0.00 37.29 2.71
201 202 0.537143 TTCTCCACGCAGGCACATTT 60.537 50.000 0.00 0.00 37.29 2.32
202 203 1.210931 CTCCACGCAGGCACATTTG 59.789 57.895 0.00 0.00 37.29 2.32
203 204 2.203972 CTCCACGCAGGCACATTTGG 62.204 60.000 0.00 0.00 37.29 3.28
204 205 2.259204 CACGCAGGCACATTTGGG 59.741 61.111 0.00 0.00 0.00 4.12
205 206 2.203480 ACGCAGGCACATTTGGGT 60.203 55.556 0.00 0.00 35.89 4.51
206 207 2.268076 ACGCAGGCACATTTGGGTC 61.268 57.895 0.00 0.00 35.88 4.46
207 208 2.267351 CGCAGGCACATTTGGGTCA 61.267 57.895 0.00 0.00 0.00 4.02
208 209 1.588082 GCAGGCACATTTGGGTCAG 59.412 57.895 0.00 0.00 0.00 3.51
209 210 1.588082 CAGGCACATTTGGGTCAGC 59.412 57.895 0.00 0.00 0.00 4.26
210 211 1.607467 AGGCACATTTGGGTCAGCC 60.607 57.895 0.00 0.00 42.31 4.85
211 212 1.607467 GGCACATTTGGGTCAGCCT 60.607 57.895 0.00 0.00 39.02 4.58
212 213 1.598701 GGCACATTTGGGTCAGCCTC 61.599 60.000 0.00 0.00 39.02 4.70
213 214 1.598701 GCACATTTGGGTCAGCCTCC 61.599 60.000 0.00 0.00 34.45 4.30
214 215 0.967380 CACATTTGGGTCAGCCTCCC 60.967 60.000 0.00 1.98 44.81 4.30
215 216 1.380380 CATTTGGGTCAGCCTCCCC 60.380 63.158 0.00 1.05 44.00 4.81
216 217 2.983879 ATTTGGGTCAGCCTCCCCG 61.984 63.158 0.00 0.00 44.44 5.73
217 218 4.974438 TTGGGTCAGCCTCCCCGT 62.974 66.667 0.00 0.00 44.44 5.28
240 241 2.679996 GGCCAAGCCGACCCATTT 60.680 61.111 0.00 0.00 39.62 2.32
241 242 2.710902 GGCCAAGCCGACCCATTTC 61.711 63.158 0.00 0.00 39.62 2.17
242 243 1.976474 GCCAAGCCGACCCATTTCA 60.976 57.895 0.00 0.00 0.00 2.69
243 244 1.937546 GCCAAGCCGACCCATTTCAG 61.938 60.000 0.00 0.00 0.00 3.02
244 245 0.322456 CCAAGCCGACCCATTTCAGA 60.322 55.000 0.00 0.00 0.00 3.27
245 246 1.533625 CAAGCCGACCCATTTCAGAA 58.466 50.000 0.00 0.00 0.00 3.02
246 247 2.094675 CAAGCCGACCCATTTCAGAAT 58.905 47.619 0.00 0.00 0.00 2.40
247 248 1.755179 AGCCGACCCATTTCAGAATG 58.245 50.000 0.00 0.00 41.87 2.67
248 249 0.101219 GCCGACCCATTTCAGAATGC 59.899 55.000 0.00 0.00 41.06 3.56
249 250 1.462616 CCGACCCATTTCAGAATGCA 58.537 50.000 0.00 0.00 41.06 3.96
250 251 1.402968 CCGACCCATTTCAGAATGCAG 59.597 52.381 0.00 0.00 41.06 4.41
251 252 2.358957 CGACCCATTTCAGAATGCAGA 58.641 47.619 0.00 0.00 41.06 4.26
252 253 2.096496 CGACCCATTTCAGAATGCAGAC 59.904 50.000 0.00 0.00 41.06 3.51
253 254 2.086869 ACCCATTTCAGAATGCAGACG 58.913 47.619 0.00 0.00 41.06 4.18
254 255 1.202222 CCCATTTCAGAATGCAGACGC 60.202 52.381 0.00 0.00 41.06 5.19
255 256 1.530441 CCATTTCAGAATGCAGACGCG 60.530 52.381 3.53 3.53 41.06 6.01
256 257 0.097674 ATTTCAGAATGCAGACGCGC 59.902 50.000 5.73 0.00 42.97 6.86
258 259 1.900585 TTCAGAATGCAGACGCGCAC 61.901 55.000 5.73 0.00 46.56 5.34
259 260 3.481903 AGAATGCAGACGCGCACG 61.482 61.111 5.73 0.00 46.56 5.34
278 279 4.659172 CCGCCTGGCTGACCCAAA 62.659 66.667 17.92 0.00 44.81 3.28
279 280 3.365265 CGCCTGGCTGACCCAAAC 61.365 66.667 17.92 0.00 44.81 2.93
280 281 3.365265 GCCTGGCTGACCCAAACG 61.365 66.667 12.43 0.00 44.81 3.60
281 282 2.672996 CCTGGCTGACCCAAACGG 60.673 66.667 0.00 0.00 44.81 4.44
282 283 2.429930 CTGGCTGACCCAAACGGA 59.570 61.111 0.00 0.00 44.81 4.69
283 284 1.966451 CTGGCTGACCCAAACGGAC 60.966 63.158 0.00 0.00 44.81 4.79
284 285 2.112297 GGCTGACCCAAACGGACA 59.888 61.111 0.00 0.00 34.92 4.02
285 286 1.527380 GGCTGACCCAAACGGACAA 60.527 57.895 0.00 0.00 35.79 3.18
286 287 1.104577 GGCTGACCCAAACGGACAAA 61.105 55.000 0.00 0.00 35.79 2.83
287 288 0.741915 GCTGACCCAAACGGACAAAA 59.258 50.000 0.00 0.00 35.79 2.44
288 289 1.135333 GCTGACCCAAACGGACAAAAA 59.865 47.619 0.00 0.00 35.79 1.94
289 290 2.798145 GCTGACCCAAACGGACAAAAAG 60.798 50.000 0.00 0.00 35.79 2.27
290 291 1.751924 TGACCCAAACGGACAAAAAGG 59.248 47.619 0.00 0.00 33.04 3.11
291 292 2.025898 GACCCAAACGGACAAAAAGGA 58.974 47.619 0.00 0.00 34.64 3.36
292 293 1.752498 ACCCAAACGGACAAAAAGGAC 59.248 47.619 0.00 0.00 34.64 3.85
293 294 1.751924 CCCAAACGGACAAAAAGGACA 59.248 47.619 0.00 0.00 0.00 4.02
294 295 2.166664 CCCAAACGGACAAAAAGGACAA 59.833 45.455 0.00 0.00 0.00 3.18
295 296 3.181470 CCCAAACGGACAAAAAGGACAAT 60.181 43.478 0.00 0.00 0.00 2.71
296 297 3.801594 CCAAACGGACAAAAAGGACAATG 59.198 43.478 0.00 0.00 0.00 2.82
297 298 2.793278 ACGGACAAAAAGGACAATGC 57.207 45.000 0.00 0.00 0.00 3.56
298 299 1.001815 ACGGACAAAAAGGACAATGCG 60.002 47.619 0.00 0.00 0.00 4.73
299 300 1.418373 GGACAAAAAGGACAATGCGC 58.582 50.000 0.00 0.00 0.00 6.09
300 301 1.052287 GACAAAAAGGACAATGCGCG 58.948 50.000 0.00 0.00 0.00 6.86
301 302 0.939106 ACAAAAAGGACAATGCGCGC 60.939 50.000 27.26 27.26 0.00 6.86
302 303 1.729131 AAAAAGGACAATGCGCGCG 60.729 52.632 28.44 28.44 0.00 6.86
303 304 2.400896 AAAAAGGACAATGCGCGCGT 62.401 50.000 32.35 25.30 0.00 6.01
304 305 2.400896 AAAAGGACAATGCGCGCGTT 62.401 50.000 31.66 31.66 0.00 4.84
305 306 2.780149 AAAGGACAATGCGCGCGTTC 62.780 55.000 34.11 24.13 0.00 3.95
306 307 4.083600 GGACAATGCGCGCGTTCA 62.084 61.111 34.11 22.07 0.00 3.18
307 308 2.098298 GACAATGCGCGCGTTCAT 59.902 55.556 34.11 24.97 0.00 2.57
308 309 1.511887 GACAATGCGCGCGTTCATT 60.512 52.632 34.11 27.47 33.56 2.57
309 310 1.065031 GACAATGCGCGCGTTCATTT 61.065 50.000 34.11 18.94 31.15 2.32
310 311 1.336403 ACAATGCGCGCGTTCATTTG 61.336 50.000 34.11 25.34 31.15 2.32
311 312 1.801113 AATGCGCGCGTTCATTTGG 60.801 52.632 31.66 0.00 29.34 3.28
312 313 3.681961 ATGCGCGCGTTCATTTGGG 62.682 57.895 32.35 0.00 0.00 4.12
313 314 4.398598 GCGCGCGTTCATTTGGGT 62.399 61.111 32.35 0.00 0.00 4.51
314 315 2.202298 CGCGCGTTCATTTGGGTC 60.202 61.111 24.19 0.00 0.00 4.46
315 316 2.202298 GCGCGTTCATTTGGGTCG 60.202 61.111 8.43 0.00 0.00 4.79
316 317 2.202298 CGCGTTCATTTGGGTCGC 60.202 61.111 0.00 0.00 42.78 5.19
317 318 2.178273 GCGTTCATTTGGGTCGCC 59.822 61.111 0.00 0.00 40.83 5.54
318 319 2.874751 CGTTCATTTGGGTCGCCC 59.125 61.111 7.87 7.87 45.71 6.13
327 328 4.324991 GGGTCGCCCCGTTGAAGT 62.325 66.667 3.73 0.00 42.41 3.01
328 329 2.281276 GGTCGCCCCGTTGAAGTT 60.281 61.111 0.00 0.00 0.00 2.66
329 330 2.613506 GGTCGCCCCGTTGAAGTTG 61.614 63.158 0.00 0.00 0.00 3.16
330 331 2.975799 TCGCCCCGTTGAAGTTGC 60.976 61.111 0.00 0.00 0.00 4.17
331 332 2.978010 CGCCCCGTTGAAGTTGCT 60.978 61.111 0.00 0.00 0.00 3.91
332 333 2.954611 GCCCCGTTGAAGTTGCTC 59.045 61.111 0.00 0.00 0.00 4.26
333 334 1.600916 GCCCCGTTGAAGTTGCTCT 60.601 57.895 0.00 0.00 0.00 4.09
334 335 0.321298 GCCCCGTTGAAGTTGCTCTA 60.321 55.000 0.00 0.00 0.00 2.43
335 336 1.880646 GCCCCGTTGAAGTTGCTCTAA 60.881 52.381 0.00 0.00 0.00 2.10
336 337 2.076863 CCCCGTTGAAGTTGCTCTAAG 58.923 52.381 0.00 0.00 0.00 2.18
337 338 2.289444 CCCCGTTGAAGTTGCTCTAAGA 60.289 50.000 0.00 0.00 0.00 2.10
338 339 3.399330 CCCGTTGAAGTTGCTCTAAGAA 58.601 45.455 0.00 0.00 0.00 2.52
339 340 3.186613 CCCGTTGAAGTTGCTCTAAGAAC 59.813 47.826 0.00 0.00 0.00 3.01
340 341 4.058817 CCGTTGAAGTTGCTCTAAGAACT 58.941 43.478 0.00 0.00 33.75 3.01
341 342 4.150804 CCGTTGAAGTTGCTCTAAGAACTC 59.849 45.833 0.00 0.00 31.02 3.01
342 343 4.985409 CGTTGAAGTTGCTCTAAGAACTCT 59.015 41.667 0.00 0.00 31.02 3.24
343 344 5.117897 CGTTGAAGTTGCTCTAAGAACTCTC 59.882 44.000 0.00 0.00 31.02 3.20
344 345 4.799678 TGAAGTTGCTCTAAGAACTCTCG 58.200 43.478 0.00 0.00 31.02 4.04
345 346 4.278669 TGAAGTTGCTCTAAGAACTCTCGT 59.721 41.667 0.00 0.00 31.02 4.18
346 347 4.428615 AGTTGCTCTAAGAACTCTCGTC 57.571 45.455 0.00 0.00 0.00 4.20
347 348 3.191791 AGTTGCTCTAAGAACTCTCGTCC 59.808 47.826 0.00 0.00 0.00 4.79
348 349 3.074675 TGCTCTAAGAACTCTCGTCCT 57.925 47.619 0.00 0.00 0.00 3.85
349 350 3.011119 TGCTCTAAGAACTCTCGTCCTC 58.989 50.000 0.00 0.00 0.00 3.71
350 351 2.356695 GCTCTAAGAACTCTCGTCCTCC 59.643 54.545 0.00 0.00 0.00 4.30
351 352 3.881220 CTCTAAGAACTCTCGTCCTCCT 58.119 50.000 0.00 0.00 0.00 3.69
352 353 3.875134 CTCTAAGAACTCTCGTCCTCCTC 59.125 52.174 0.00 0.00 0.00 3.71
353 354 1.842052 AAGAACTCTCGTCCTCCTCC 58.158 55.000 0.00 0.00 0.00 4.30
354 355 0.699399 AGAACTCTCGTCCTCCTCCA 59.301 55.000 0.00 0.00 0.00 3.86
355 356 1.099689 GAACTCTCGTCCTCCTCCAG 58.900 60.000 0.00 0.00 0.00 3.86
356 357 0.406361 AACTCTCGTCCTCCTCCAGT 59.594 55.000 0.00 0.00 0.00 4.00
357 358 0.034863 ACTCTCGTCCTCCTCCAGTC 60.035 60.000 0.00 0.00 0.00 3.51
358 359 0.034960 CTCTCGTCCTCCTCCAGTCA 60.035 60.000 0.00 0.00 0.00 3.41
359 360 0.626382 TCTCGTCCTCCTCCAGTCAT 59.374 55.000 0.00 0.00 0.00 3.06
360 361 1.844497 TCTCGTCCTCCTCCAGTCATA 59.156 52.381 0.00 0.00 0.00 2.15
361 362 2.443632 TCTCGTCCTCCTCCAGTCATAT 59.556 50.000 0.00 0.00 0.00 1.78
362 363 2.817258 CTCGTCCTCCTCCAGTCATATC 59.183 54.545 0.00 0.00 0.00 1.63
363 364 2.443632 TCGTCCTCCTCCAGTCATATCT 59.556 50.000 0.00 0.00 0.00 1.98
364 365 2.817258 CGTCCTCCTCCAGTCATATCTC 59.183 54.545 0.00 0.00 0.00 2.75
365 366 3.748989 CGTCCTCCTCCAGTCATATCTCA 60.749 52.174 0.00 0.00 0.00 3.27
366 367 3.826157 GTCCTCCTCCAGTCATATCTCAG 59.174 52.174 0.00 0.00 0.00 3.35
367 368 3.724209 TCCTCCTCCAGTCATATCTCAGA 59.276 47.826 0.00 0.00 0.00 3.27
368 369 3.826157 CCTCCTCCAGTCATATCTCAGAC 59.174 52.174 0.00 0.00 35.02 3.51
369 370 4.468713 CTCCTCCAGTCATATCTCAGACA 58.531 47.826 0.00 0.00 37.23 3.41
370 371 4.211125 TCCTCCAGTCATATCTCAGACAC 58.789 47.826 0.00 0.00 37.23 3.67
371 372 3.956848 CCTCCAGTCATATCTCAGACACA 59.043 47.826 0.00 0.00 37.23 3.72
372 373 4.202101 CCTCCAGTCATATCTCAGACACAC 60.202 50.000 0.00 0.00 37.23 3.82
373 374 3.378427 TCCAGTCATATCTCAGACACACG 59.622 47.826 0.00 0.00 37.23 4.49
374 375 3.111838 CAGTCATATCTCAGACACACGC 58.888 50.000 0.00 0.00 37.23 5.34
375 376 2.112522 GTCATATCTCAGACACACGCG 58.887 52.381 3.53 3.53 34.93 6.01
376 377 1.065551 TCATATCTCAGACACACGCGG 59.934 52.381 12.47 1.27 0.00 6.46
377 378 1.065551 CATATCTCAGACACACGCGGA 59.934 52.381 12.47 0.00 0.00 5.54
378 379 0.733150 TATCTCAGACACACGCGGAG 59.267 55.000 12.47 4.93 0.00 4.63
379 380 1.244697 ATCTCAGACACACGCGGAGT 61.245 55.000 12.47 5.72 0.00 3.85
380 381 1.007271 CTCAGACACACGCGGAGTT 60.007 57.895 12.47 0.00 0.00 3.01
381 382 1.004277 CTCAGACACACGCGGAGTTC 61.004 60.000 12.47 9.12 0.00 3.01
382 383 2.022129 CAGACACACGCGGAGTTCC 61.022 63.158 12.47 2.80 0.00 3.62
400 401 2.811317 GCTCCGCGTGTTCCTCTG 60.811 66.667 4.92 0.00 0.00 3.35
401 402 2.962569 CTCCGCGTGTTCCTCTGA 59.037 61.111 4.92 0.00 0.00 3.27
402 403 1.444553 CTCCGCGTGTTCCTCTGAC 60.445 63.158 4.92 0.00 0.00 3.51
403 404 2.432628 CCGCGTGTTCCTCTGACC 60.433 66.667 4.92 0.00 0.00 4.02
404 405 2.651361 CGCGTGTTCCTCTGACCT 59.349 61.111 0.00 0.00 0.00 3.85
405 406 1.006102 CGCGTGTTCCTCTGACCTT 60.006 57.895 0.00 0.00 0.00 3.50
406 407 0.600255 CGCGTGTTCCTCTGACCTTT 60.600 55.000 0.00 0.00 0.00 3.11
407 408 1.594331 GCGTGTTCCTCTGACCTTTT 58.406 50.000 0.00 0.00 0.00 2.27
408 409 1.264288 GCGTGTTCCTCTGACCTTTTG 59.736 52.381 0.00 0.00 0.00 2.44
409 410 2.561569 CGTGTTCCTCTGACCTTTTGT 58.438 47.619 0.00 0.00 0.00 2.83
410 411 2.943033 CGTGTTCCTCTGACCTTTTGTT 59.057 45.455 0.00 0.00 0.00 2.83
411 412 3.377172 CGTGTTCCTCTGACCTTTTGTTT 59.623 43.478 0.00 0.00 0.00 2.83
412 413 4.142469 CGTGTTCCTCTGACCTTTTGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
413 414 5.340803 GTGTTCCTCTGACCTTTTGTTTTC 58.659 41.667 0.00 0.00 0.00 2.29
414 415 5.013547 TGTTCCTCTGACCTTTTGTTTTCA 58.986 37.500 0.00 0.00 0.00 2.69
415 416 5.656416 TGTTCCTCTGACCTTTTGTTTTCAT 59.344 36.000 0.00 0.00 0.00 2.57
416 417 6.154363 TGTTCCTCTGACCTTTTGTTTTCATT 59.846 34.615 0.00 0.00 0.00 2.57
417 418 6.391227 TCCTCTGACCTTTTGTTTTCATTC 57.609 37.500 0.00 0.00 0.00 2.67
418 419 5.890985 TCCTCTGACCTTTTGTTTTCATTCA 59.109 36.000 0.00 0.00 0.00 2.57
419 420 6.039717 TCCTCTGACCTTTTGTTTTCATTCAG 59.960 38.462 0.00 0.00 0.00 3.02
420 421 6.039717 CCTCTGACCTTTTGTTTTCATTCAGA 59.960 38.462 0.00 0.00 0.00 3.27
421 422 6.795399 TCTGACCTTTTGTTTTCATTCAGAC 58.205 36.000 0.00 0.00 0.00 3.51
422 423 6.376864 TCTGACCTTTTGTTTTCATTCAGACA 59.623 34.615 0.00 0.00 0.00 3.41
423 424 6.929625 TGACCTTTTGTTTTCATTCAGACAA 58.070 32.000 0.00 0.00 0.00 3.18
424 425 6.811170 TGACCTTTTGTTTTCATTCAGACAAC 59.189 34.615 0.00 0.00 37.42 3.32
425 426 6.935167 ACCTTTTGTTTTCATTCAGACAACT 58.065 32.000 0.00 0.00 37.70 3.16
426 427 7.386059 ACCTTTTGTTTTCATTCAGACAACTT 58.614 30.769 0.00 0.00 37.70 2.66
427 428 8.527810 ACCTTTTGTTTTCATTCAGACAACTTA 58.472 29.630 0.00 0.00 37.70 2.24
428 429 9.023967 CCTTTTGTTTTCATTCAGACAACTTAG 57.976 33.333 0.00 0.00 37.70 2.18
437 438 7.492524 TCATTCAGACAACTTAGGTATAGCTG 58.507 38.462 14.72 1.28 0.00 4.24
443 444 4.081087 ACAACTTAGGTATAGCTGGTGTGG 60.081 45.833 14.72 9.84 0.00 4.17
455 456 3.119137 AGCTGGTGTGGTTTTTCTTTGAC 60.119 43.478 0.00 0.00 0.00 3.18
456 457 3.367910 GCTGGTGTGGTTTTTCTTTGACA 60.368 43.478 0.00 0.00 0.00 3.58
457 458 4.173256 CTGGTGTGGTTTTTCTTTGACAC 58.827 43.478 0.00 0.00 34.30 3.67
458 459 3.574396 TGGTGTGGTTTTTCTTTGACACA 59.426 39.130 0.00 0.00 36.30 3.72
459 460 4.173256 GGTGTGGTTTTTCTTTGACACAG 58.827 43.478 0.00 0.00 39.23 3.66
496 505 1.302192 TGGAACGGTGCAAGTAGCC 60.302 57.895 0.00 0.00 44.83 3.93
497 506 1.302192 GGAACGGTGCAAGTAGCCA 60.302 57.895 0.00 0.00 44.83 4.75
498 507 0.887387 GGAACGGTGCAAGTAGCCAA 60.887 55.000 0.00 0.00 44.83 4.52
499 508 0.517316 GAACGGTGCAAGTAGCCAAG 59.483 55.000 0.00 0.00 44.83 3.61
500 509 0.179029 AACGGTGCAAGTAGCCAAGT 60.179 50.000 0.00 0.00 44.83 3.16
501 510 0.682852 ACGGTGCAAGTAGCCAAGTA 59.317 50.000 0.00 0.00 44.83 2.24
502 511 1.337823 ACGGTGCAAGTAGCCAAGTAG 60.338 52.381 0.00 0.00 44.83 2.57
503 512 1.087501 GGTGCAAGTAGCCAAGTAGC 58.912 55.000 0.00 0.00 44.83 3.58
533 542 2.158449 CACCAAAATCTCGAGTGAGCAC 59.842 50.000 13.13 0.00 42.26 4.40
551 560 2.540157 GCACCAGACGGTAACAACAAAC 60.540 50.000 0.00 0.00 46.94 2.93
679 693 1.609501 TACCTCGTGCCTTGCTCCT 60.610 57.895 0.00 0.00 0.00 3.69
680 694 1.605058 TACCTCGTGCCTTGCTCCTC 61.605 60.000 0.00 0.00 0.00 3.71
681 695 2.659016 CTCGTGCCTTGCTCCTCA 59.341 61.111 0.00 0.00 0.00 3.86
682 696 1.739562 CTCGTGCCTTGCTCCTCAC 60.740 63.158 0.00 0.00 0.00 3.51
683 697 2.031012 CGTGCCTTGCTCCTCACA 59.969 61.111 0.00 0.00 0.00 3.58
707 722 4.457496 ACTCACCCGCATCCGCTG 62.457 66.667 0.00 0.00 35.30 5.18
872 887 1.283029 TCCCTCTTTCTCCATTGCTGG 59.717 52.381 0.00 0.00 44.64 4.85
931 946 1.449601 CCTTGCTGATACGGCGGTT 60.450 57.895 13.24 0.00 38.82 4.44
973 988 1.334556 GGCGACCGTTGGTTTAGTTTT 59.665 47.619 0.00 0.00 35.25 2.43
977 992 2.033372 ACCGTTGGTTTAGTTTTGGGG 58.967 47.619 0.00 0.00 27.29 4.96
978 993 1.269883 CCGTTGGTTTAGTTTTGGGGC 60.270 52.381 0.00 0.00 0.00 5.80
981 998 2.432874 GTTGGTTTAGTTTTGGGGCTGT 59.567 45.455 0.00 0.00 0.00 4.40
1008 1025 2.359850 GAGGTTGTGATGGCGGCA 60.360 61.111 16.34 16.34 0.00 5.69
1009 1026 1.971167 GAGGTTGTGATGGCGGCAA 60.971 57.895 18.31 0.00 0.00 4.52
1385 1402 4.119136 GTGAGCTTATCTTCTTCTCCTGC 58.881 47.826 0.00 0.00 0.00 4.85
1388 1405 3.068024 AGCTTATCTTCTTCTCCTGCGAG 59.932 47.826 0.00 0.00 37.48 5.03
1442 1463 1.035932 CCCCCTTGCTCATGCTTCAG 61.036 60.000 0.00 0.00 40.48 3.02
1508 1529 1.468908 CGTGCTAAGAGAGGTGCTGAG 60.469 57.143 0.00 0.00 0.00 3.35
1551 1581 2.663196 GGGGAGGTGGACGTGAAG 59.337 66.667 0.00 0.00 0.00 3.02
1722 1764 4.034394 TCTCATGTCATAACTGCGAATTGC 59.966 41.667 0.00 0.00 46.70 3.56
1740 1782 2.158959 CGGAGATTCACGCGTGGTC 61.159 63.158 36.41 31.01 0.00 4.02
1825 1867 5.415221 ACTGCTCAGCTAAGTTTATCTGTC 58.585 41.667 0.00 0.00 30.93 3.51
2003 2045 0.243365 TTGCACGCCCAAGCTTATTG 59.757 50.000 0.00 0.00 36.60 1.90
2174 2225 5.130705 TCTAGGAGGCATCTCTCTGTAAA 57.869 43.478 0.00 0.00 39.86 2.01
2175 2226 5.519808 TCTAGGAGGCATCTCTCTGTAAAA 58.480 41.667 0.00 0.00 39.86 1.52
2192 2243 6.046290 TGTAAAAGCTAGGAACTTAGGACC 57.954 41.667 0.00 0.00 41.75 4.46
2257 2309 7.285783 GTTGTAAACTGTTCAGCATATACGA 57.714 36.000 0.00 0.00 45.32 3.43
2261 2313 5.973651 AACTGTTCAGCATATACGACATG 57.026 39.130 0.00 0.00 0.00 3.21
2432 2484 6.036577 TGTCAAAAAGAAGAAAAGCCAGTT 57.963 33.333 0.00 0.00 0.00 3.16
2433 2485 7.164230 TGTCAAAAAGAAGAAAAGCCAGTTA 57.836 32.000 0.00 0.00 0.00 2.24
2434 2486 7.033185 TGTCAAAAAGAAGAAAAGCCAGTTAC 58.967 34.615 0.00 0.00 0.00 2.50
2435 2487 6.475727 GTCAAAAAGAAGAAAAGCCAGTTACC 59.524 38.462 0.00 0.00 0.00 2.85
2436 2488 6.153680 TCAAAAAGAAGAAAAGCCAGTTACCA 59.846 34.615 0.00 0.00 0.00 3.25
2437 2489 6.538945 AAAAGAAGAAAAGCCAGTTACCAA 57.461 33.333 0.00 0.00 0.00 3.67
2438 2490 5.515797 AAGAAGAAAAGCCAGTTACCAAC 57.484 39.130 0.00 0.00 0.00 3.77
2439 2491 4.793201 AGAAGAAAAGCCAGTTACCAACT 58.207 39.130 0.00 0.00 44.06 3.16
2535 2587 3.872511 TGTGCCACAATTTCCATCATC 57.127 42.857 0.00 0.00 0.00 2.92
2651 2704 2.975732 ACGAGATCACATGCTGTCAT 57.024 45.000 0.00 0.00 0.00 3.06
2690 2743 8.840321 GCTCATTTCAGGCAGTAAATTATAAGA 58.160 33.333 0.00 0.00 0.00 2.10
2718 2772 6.426587 AGGTAATGCTCTGTTTCATAACCAT 58.573 36.000 0.00 0.00 33.15 3.55
2803 2857 6.377429 AGTCTGTGTTCCTCGATTATGTTCTA 59.623 38.462 0.00 0.00 0.00 2.10
2865 2919 9.950496 AGTTGTCAGTGAACTTAAATATGATCT 57.050 29.630 0.00 0.00 28.94 2.75
2965 3020 8.594550 CAAAGGTACCCTGTATACTTATGCTAT 58.405 37.037 8.74 0.00 32.13 2.97
3003 3058 3.649073 TCTGGTAGTTGTGAATGTGTCG 58.351 45.455 0.00 0.00 0.00 4.35
3051 3114 6.683974 ATTAGTTGCACTTGTTATAGCTGG 57.316 37.500 0.00 0.00 0.00 4.85
3057 3120 4.020573 TGCACTTGTTATAGCTGGTACTGT 60.021 41.667 0.00 0.00 0.00 3.55
3058 3121 4.567159 GCACTTGTTATAGCTGGTACTGTC 59.433 45.833 0.00 0.00 0.00 3.51
3059 3122 5.624738 GCACTTGTTATAGCTGGTACTGTCT 60.625 44.000 0.00 0.00 0.00 3.41
3060 3123 5.807520 CACTTGTTATAGCTGGTACTGTCTG 59.192 44.000 0.00 0.00 0.00 3.51
3061 3124 5.715279 ACTTGTTATAGCTGGTACTGTCTGA 59.285 40.000 0.00 0.00 0.00 3.27
3062 3125 6.210784 ACTTGTTATAGCTGGTACTGTCTGAA 59.789 38.462 0.00 0.00 0.00 3.02
3063 3126 6.599356 TGTTATAGCTGGTACTGTCTGAAA 57.401 37.500 0.00 0.00 0.00 2.69
3064 3127 7.182817 TGTTATAGCTGGTACTGTCTGAAAT 57.817 36.000 0.00 0.00 0.00 2.17
3065 3128 8.301252 TGTTATAGCTGGTACTGTCTGAAATA 57.699 34.615 0.00 0.00 0.00 1.40
3066 3129 8.195436 TGTTATAGCTGGTACTGTCTGAAATAC 58.805 37.037 0.00 0.00 0.00 1.89
3177 3241 2.011741 TACTCCGTGCATGGGTAGCG 62.012 60.000 24.78 10.59 33.85 4.26
3181 3245 2.167219 CGTGCATGGGTAGCGTCAG 61.167 63.158 0.00 0.00 33.85 3.51
3254 3321 1.267121 ACTTGCAGGTGACCGATACT 58.733 50.000 0.00 0.00 0.00 2.12
3451 3518 2.249413 CTGATGGAGGCAGCGAACCT 62.249 60.000 0.00 0.00 41.41 3.50
3566 3633 5.695851 TGACCTGAAATCAAGAAAGAAGC 57.304 39.130 0.00 0.00 0.00 3.86
3588 3655 3.451902 CCCAAGGGCAAATCATAACATGT 59.548 43.478 0.00 0.00 0.00 3.21
3596 3663 7.039504 AGGGCAAATCATAACATGTCCATAATC 60.040 37.037 0.00 0.00 40.03 1.75
3601 3668 6.514012 TCATAACATGTCCATAATCCACCT 57.486 37.500 0.00 0.00 0.00 4.00
3614 3681 0.965866 TCCACCTGACTAGCTGACCG 60.966 60.000 0.00 0.00 0.00 4.79
3624 3691 3.106407 GCTGACCGTGTCTGCGAC 61.106 66.667 15.92 2.32 44.64 5.19
3625 3692 2.430921 CTGACCGTGTCTGCGACC 60.431 66.667 6.30 0.00 33.15 4.79
3626 3693 4.337060 TGACCGTGTCTGCGACCG 62.337 66.667 6.30 8.58 33.15 4.79
3650 3717 0.601558 TTCGTCCGCTAGTCTGCTTT 59.398 50.000 0.00 0.00 0.00 3.51
3747 3816 6.207810 AGGTCTACTTCCGATAATCTGATGTC 59.792 42.308 0.00 0.00 0.00 3.06
3771 3840 0.859788 GTGTGTGTTGGCGTGTTTCG 60.860 55.000 0.00 0.00 43.12 3.46
3810 3879 0.179004 TGGTTTCGGGCTGTTCACAT 60.179 50.000 0.00 0.00 0.00 3.21
3925 3994 5.038683 CGTCGGAAGTTACATATGTAGCAA 58.961 41.667 25.71 8.65 34.70 3.91
3963 4032 3.551082 GTGTTGCTCTTCTCAGATCATCG 59.449 47.826 0.00 0.00 0.00 3.84
3970 4039 6.072783 TGCTCTTCTCAGATCATCGTATGTAG 60.073 42.308 0.00 0.00 0.00 2.74
3972 4041 7.118535 GCTCTTCTCAGATCATCGTATGTAGTA 59.881 40.741 0.00 0.00 0.00 1.82
3974 4043 8.151596 TCTTCTCAGATCATCGTATGTAGTACT 58.848 37.037 0.00 0.00 0.00 2.73
3977 4046 9.121658 TCTCAGATCATCGTATGTAGTACTTTT 57.878 33.333 0.00 0.00 0.00 2.27
3978 4047 9.388346 CTCAGATCATCGTATGTAGTACTTTTC 57.612 37.037 0.00 0.00 0.00 2.29
4138 4207 2.033424 GCACAAAAACACCTCAGTCCTC 59.967 50.000 0.00 0.00 0.00 3.71
4249 4321 4.434198 CGACATCACACATAAAACCGTCAG 60.434 45.833 0.00 0.00 0.00 3.51
4297 4369 0.389948 GGAAGGACTACCACGCTGTG 60.390 60.000 2.27 2.27 38.94 3.66
4360 4434 5.016245 TCCATTTTTGGGGAAGGAACTATCT 59.984 40.000 0.00 0.00 38.49 1.98
4407 4481 7.345691 TCATTTAAAGGGATCAGCAGTATTGA 58.654 34.615 0.00 0.00 0.00 2.57
4422 4496 3.697045 AGTATTGAACTCTCTCCGTCCTG 59.303 47.826 0.00 0.00 30.33 3.86
4513 4587 5.405571 ACGTGTAGCAACTATTTTCTGTCTG 59.594 40.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.278330 GCCTTGTCCTTGCCCTTGG 61.278 63.158 0.00 0.00 0.00 3.61
21 22 2.278330 GGCCTTGTCCTTGCCCTTG 61.278 63.158 0.00 0.00 39.30 3.61
22 23 2.118294 GGCCTTGTCCTTGCCCTT 59.882 61.111 0.00 0.00 39.30 3.95
23 24 4.351054 CGGCCTTGTCCTTGCCCT 62.351 66.667 0.00 0.00 42.29 5.19
24 25 4.344865 TCGGCCTTGTCCTTGCCC 62.345 66.667 0.00 0.00 42.29 5.36
25 26 3.056328 GTCGGCCTTGTCCTTGCC 61.056 66.667 0.00 0.00 41.85 4.52
26 27 3.423154 CGTCGGCCTTGTCCTTGC 61.423 66.667 0.00 0.00 0.00 4.01
27 28 2.027625 GTCGTCGGCCTTGTCCTTG 61.028 63.158 0.00 0.00 0.00 3.61
28 29 2.342648 GTCGTCGGCCTTGTCCTT 59.657 61.111 0.00 0.00 0.00 3.36
29 30 4.052229 CGTCGTCGGCCTTGTCCT 62.052 66.667 0.00 0.00 0.00 3.85
30 31 4.353437 ACGTCGTCGGCCTTGTCC 62.353 66.667 7.05 0.00 41.85 4.02
31 32 2.804090 GACGTCGTCGGCCTTGTC 60.804 66.667 10.05 0.00 39.49 3.18
37 38 4.549516 GCCCTAGACGTCGTCGGC 62.550 72.222 21.69 21.69 46.75 5.54
38 39 3.109612 CTGCCCTAGACGTCGTCGG 62.110 68.421 19.11 15.24 41.85 4.79
39 40 2.403987 CTGCCCTAGACGTCGTCG 59.596 66.667 19.11 6.52 37.67 5.12
40 41 2.102553 GCTGCCCTAGACGTCGTC 59.897 66.667 17.70 17.70 0.00 4.20
41 42 3.812019 CGCTGCCCTAGACGTCGT 61.812 66.667 10.46 0.00 0.00 4.34
42 43 3.812019 ACGCTGCCCTAGACGTCG 61.812 66.667 10.46 0.00 35.33 5.12
43 44 2.202623 CACGCTGCCCTAGACGTC 60.203 66.667 7.70 7.70 37.16 4.34
44 45 4.436998 GCACGCTGCCCTAGACGT 62.437 66.667 0.00 0.00 37.42 4.34
72 73 2.969677 AAAAAGTTTGCGCCCGCCTG 62.970 55.000 4.18 0.00 41.09 4.85
73 74 2.791868 AAAAAGTTTGCGCCCGCCT 61.792 52.632 4.18 0.00 41.09 5.52
74 75 2.279851 AAAAAGTTTGCGCCCGCC 60.280 55.556 4.18 0.00 41.09 6.13
100 101 8.354426 GCCAAAGTCCACTTAAACATTAACTAA 58.646 33.333 0.00 0.00 34.61 2.24
101 102 7.040271 GGCCAAAGTCCACTTAAACATTAACTA 60.040 37.037 0.00 0.00 34.61 2.24
102 103 6.239204 GGCCAAAGTCCACTTAAACATTAACT 60.239 38.462 0.00 0.00 34.61 2.24
103 104 5.924254 GGCCAAAGTCCACTTAAACATTAAC 59.076 40.000 0.00 0.00 34.61 2.01
104 105 5.278561 CGGCCAAAGTCCACTTAAACATTAA 60.279 40.000 2.24 0.00 34.61 1.40
105 106 4.216687 CGGCCAAAGTCCACTTAAACATTA 59.783 41.667 2.24 0.00 34.61 1.90
106 107 3.005367 CGGCCAAAGTCCACTTAAACATT 59.995 43.478 2.24 0.00 34.61 2.71
107 108 2.556622 CGGCCAAAGTCCACTTAAACAT 59.443 45.455 2.24 0.00 34.61 2.71
108 109 1.950909 CGGCCAAAGTCCACTTAAACA 59.049 47.619 2.24 0.00 34.61 2.83
109 110 1.268625 CCGGCCAAAGTCCACTTAAAC 59.731 52.381 2.24 0.00 34.61 2.01
110 111 1.611519 CCGGCCAAAGTCCACTTAAA 58.388 50.000 2.24 0.00 34.61 1.52
111 112 0.891904 GCCGGCCAAAGTCCACTTAA 60.892 55.000 18.11 0.00 34.61 1.85
112 113 1.302993 GCCGGCCAAAGTCCACTTA 60.303 57.895 18.11 0.00 34.61 2.24
113 114 2.597510 GCCGGCCAAAGTCCACTT 60.598 61.111 18.11 0.00 37.91 3.16
116 117 2.677765 TAAACGCCGGCCAAAGTCCA 62.678 55.000 23.46 1.14 0.00 4.02
117 118 1.517210 TTAAACGCCGGCCAAAGTCC 61.517 55.000 23.46 0.00 0.00 3.85
118 119 0.386352 GTTAAACGCCGGCCAAAGTC 60.386 55.000 23.46 4.06 0.00 3.01
119 120 1.655885 GTTAAACGCCGGCCAAAGT 59.344 52.632 23.46 10.32 0.00 2.66
120 121 1.081041 GGTTAAACGCCGGCCAAAG 60.081 57.895 23.46 9.53 0.00 2.77
121 122 2.905807 CGGTTAAACGCCGGCCAAA 61.906 57.895 23.46 7.11 44.98 3.28
122 123 3.355455 CGGTTAAACGCCGGCCAA 61.355 61.111 23.46 7.12 44.98 4.52
128 129 0.954938 TAAGTGGCCGGTTAAACGCC 60.955 55.000 16.38 16.38 0.00 5.68
129 130 1.089112 ATAAGTGGCCGGTTAAACGC 58.911 50.000 7.57 2.94 0.00 4.84
130 131 2.078392 ACATAAGTGGCCGGTTAAACG 58.922 47.619 5.77 5.77 0.00 3.60
131 132 4.508461 AAACATAAGTGGCCGGTTAAAC 57.492 40.909 1.90 0.00 0.00 2.01
132 133 6.837471 AATAAACATAAGTGGCCGGTTAAA 57.163 33.333 1.90 0.00 0.00 1.52
133 134 6.837471 AAATAAACATAAGTGGCCGGTTAA 57.163 33.333 1.90 0.00 0.00 2.01
134 135 7.556996 ACATAAATAAACATAAGTGGCCGGTTA 59.443 33.333 1.90 0.00 0.00 2.85
135 136 6.378848 ACATAAATAAACATAAGTGGCCGGTT 59.621 34.615 1.90 0.00 0.00 4.44
136 137 5.889289 ACATAAATAAACATAAGTGGCCGGT 59.111 36.000 1.90 0.00 0.00 5.28
137 138 6.385649 ACATAAATAAACATAAGTGGCCGG 57.614 37.500 0.00 0.00 0.00 6.13
138 139 9.959749 ATAAACATAAATAAACATAAGTGGCCG 57.040 29.630 0.00 0.00 0.00 6.13
179 180 0.749818 TGTGCCTGCGTGGAGAAAAA 60.750 50.000 0.00 0.00 38.35 1.94
180 181 0.537143 ATGTGCCTGCGTGGAGAAAA 60.537 50.000 0.00 0.00 38.35 2.29
181 182 0.537143 AATGTGCCTGCGTGGAGAAA 60.537 50.000 0.00 0.00 38.35 2.52
182 183 0.537143 AAATGTGCCTGCGTGGAGAA 60.537 50.000 0.00 0.00 38.35 2.87
183 184 1.073025 AAATGTGCCTGCGTGGAGA 59.927 52.632 0.00 0.00 38.35 3.71
184 185 1.210931 CAAATGTGCCTGCGTGGAG 59.789 57.895 0.00 0.00 38.35 3.86
185 186 2.267351 CCAAATGTGCCTGCGTGGA 61.267 57.895 0.00 0.00 38.35 4.02
186 187 2.259204 CCAAATGTGCCTGCGTGG 59.741 61.111 0.00 0.00 39.35 4.94
187 188 2.259204 CCCAAATGTGCCTGCGTG 59.741 61.111 0.00 0.00 0.00 5.34
188 189 2.203480 ACCCAAATGTGCCTGCGT 60.203 55.556 0.00 0.00 0.00 5.24
189 190 2.203972 CTGACCCAAATGTGCCTGCG 62.204 60.000 0.00 0.00 0.00 5.18
190 191 1.588082 CTGACCCAAATGTGCCTGC 59.412 57.895 0.00 0.00 0.00 4.85
191 192 1.588082 GCTGACCCAAATGTGCCTG 59.412 57.895 0.00 0.00 0.00 4.85
192 193 1.607467 GGCTGACCCAAATGTGCCT 60.607 57.895 0.00 0.00 37.58 4.75
193 194 1.598701 GAGGCTGACCCAAATGTGCC 61.599 60.000 0.00 0.00 40.54 5.01
194 195 1.598701 GGAGGCTGACCCAAATGTGC 61.599 60.000 0.00 0.00 36.11 4.57
195 196 0.967380 GGGAGGCTGACCCAAATGTG 60.967 60.000 6.40 0.00 46.05 3.21
196 197 1.384191 GGGAGGCTGACCCAAATGT 59.616 57.895 6.40 0.00 46.05 2.71
197 198 4.344237 GGGAGGCTGACCCAAATG 57.656 61.111 6.40 0.00 46.05 2.32
223 224 2.679996 AAATGGGTCGGCTTGGCC 60.680 61.111 0.00 0.00 46.75 5.36
224 225 1.937546 CTGAAATGGGTCGGCTTGGC 61.938 60.000 0.00 0.00 0.00 4.52
225 226 0.322456 TCTGAAATGGGTCGGCTTGG 60.322 55.000 0.00 0.00 0.00 3.61
226 227 1.533625 TTCTGAAATGGGTCGGCTTG 58.466 50.000 0.00 0.00 0.00 4.01
227 228 2.094675 CATTCTGAAATGGGTCGGCTT 58.905 47.619 0.00 0.00 38.91 4.35
228 229 1.755179 CATTCTGAAATGGGTCGGCT 58.245 50.000 0.00 0.00 38.91 5.52
229 230 0.101219 GCATTCTGAAATGGGTCGGC 59.899 55.000 0.00 0.00 42.18 5.54
230 231 1.402968 CTGCATTCTGAAATGGGTCGG 59.597 52.381 0.00 0.00 42.18 4.79
231 232 2.096496 GTCTGCATTCTGAAATGGGTCG 59.904 50.000 0.00 0.00 42.18 4.79
232 233 2.096496 CGTCTGCATTCTGAAATGGGTC 59.904 50.000 0.00 0.00 42.18 4.46
233 234 2.086869 CGTCTGCATTCTGAAATGGGT 58.913 47.619 0.00 0.00 42.18 4.51
234 235 1.202222 GCGTCTGCATTCTGAAATGGG 60.202 52.381 0.00 0.00 42.18 4.00
235 236 1.530441 CGCGTCTGCATTCTGAAATGG 60.530 52.381 0.00 0.00 42.18 3.16
236 237 1.806511 CGCGTCTGCATTCTGAAATG 58.193 50.000 0.00 0.00 44.31 2.32
237 238 0.097674 GCGCGTCTGCATTCTGAAAT 59.902 50.000 8.43 0.00 42.97 2.17
238 239 1.227342 TGCGCGTCTGCATTCTGAAA 61.227 50.000 8.43 0.00 40.62 2.69
239 240 1.667510 TGCGCGTCTGCATTCTGAA 60.668 52.632 8.43 0.00 40.62 3.02
240 241 2.048316 TGCGCGTCTGCATTCTGA 60.048 55.556 8.43 0.00 40.62 3.27
261 262 4.659172 TTTGGGTCAGCCAGGCGG 62.659 66.667 5.55 5.25 36.17 6.13
262 263 3.365265 GTTTGGGTCAGCCAGGCG 61.365 66.667 5.55 0.83 36.17 5.52
263 264 3.365265 CGTTTGGGTCAGCCAGGC 61.365 66.667 1.84 1.84 36.17 4.85
264 265 2.672996 CCGTTTGGGTCAGCCAGG 60.673 66.667 0.00 0.00 36.17 4.45
265 266 1.966451 GTCCGTTTGGGTCAGCCAG 60.966 63.158 0.00 0.00 37.00 4.85
266 267 2.112297 GTCCGTTTGGGTCAGCCA 59.888 61.111 0.00 0.00 37.00 4.75
267 268 1.104577 TTTGTCCGTTTGGGTCAGCC 61.105 55.000 0.00 0.00 35.24 4.85
268 269 0.741915 TTTTGTCCGTTTGGGTCAGC 59.258 50.000 0.00 0.00 35.24 4.26
269 270 2.223711 CCTTTTTGTCCGTTTGGGTCAG 60.224 50.000 0.00 0.00 35.24 3.51
270 271 1.751924 CCTTTTTGTCCGTTTGGGTCA 59.248 47.619 0.00 0.00 37.00 4.02
271 272 2.025898 TCCTTTTTGTCCGTTTGGGTC 58.974 47.619 0.00 0.00 37.00 4.46
272 273 1.752498 GTCCTTTTTGTCCGTTTGGGT 59.248 47.619 0.00 0.00 37.00 4.51
273 274 1.751924 TGTCCTTTTTGTCCGTTTGGG 59.248 47.619 0.00 0.00 35.24 4.12
274 275 3.512033 TTGTCCTTTTTGTCCGTTTGG 57.488 42.857 0.00 0.00 0.00 3.28
275 276 3.245048 GCATTGTCCTTTTTGTCCGTTTG 59.755 43.478 0.00 0.00 0.00 2.93
276 277 3.453424 GCATTGTCCTTTTTGTCCGTTT 58.547 40.909 0.00 0.00 0.00 3.60
277 278 2.542824 CGCATTGTCCTTTTTGTCCGTT 60.543 45.455 0.00 0.00 0.00 4.44
278 279 1.001815 CGCATTGTCCTTTTTGTCCGT 60.002 47.619 0.00 0.00 0.00 4.69
279 280 1.685302 CGCATTGTCCTTTTTGTCCG 58.315 50.000 0.00 0.00 0.00 4.79
280 281 1.418373 GCGCATTGTCCTTTTTGTCC 58.582 50.000 0.30 0.00 0.00 4.02
281 282 1.052287 CGCGCATTGTCCTTTTTGTC 58.948 50.000 8.75 0.00 0.00 3.18
282 283 0.939106 GCGCGCATTGTCCTTTTTGT 60.939 50.000 29.10 0.00 0.00 2.83
283 284 1.774727 GCGCGCATTGTCCTTTTTG 59.225 52.632 29.10 0.00 0.00 2.44
284 285 1.729131 CGCGCGCATTGTCCTTTTT 60.729 52.632 32.61 0.00 0.00 1.94
285 286 2.126888 CGCGCGCATTGTCCTTTT 60.127 55.556 32.61 0.00 0.00 2.27
286 287 2.780149 GAACGCGCGCATTGTCCTTT 62.780 55.000 32.58 13.51 0.00 3.11
287 288 3.308878 GAACGCGCGCATTGTCCTT 62.309 57.895 32.58 14.36 0.00 3.36
288 289 3.788766 GAACGCGCGCATTGTCCT 61.789 61.111 32.58 4.13 0.00 3.85
289 290 2.849142 AATGAACGCGCGCATTGTCC 62.849 55.000 32.58 11.25 33.74 4.02
290 291 1.065031 AAATGAACGCGCGCATTGTC 61.065 50.000 32.58 20.88 35.11 3.18
291 292 1.081509 AAATGAACGCGCGCATTGT 60.082 47.368 32.58 18.50 35.11 2.71
292 293 1.337810 CAAATGAACGCGCGCATTG 59.662 52.632 32.58 22.09 35.11 2.82
293 294 1.801113 CCAAATGAACGCGCGCATT 60.801 52.632 32.58 27.38 36.35 3.56
294 295 2.202466 CCAAATGAACGCGCGCAT 60.202 55.556 32.58 23.10 0.00 4.73
295 296 4.397090 CCCAAATGAACGCGCGCA 62.397 61.111 32.58 21.73 0.00 6.09
296 297 4.398598 ACCCAAATGAACGCGCGC 62.399 61.111 32.58 23.91 0.00 6.86
297 298 2.202298 GACCCAAATGAACGCGCG 60.202 61.111 30.96 30.96 0.00 6.86
298 299 2.202298 CGACCCAAATGAACGCGC 60.202 61.111 5.73 0.00 0.00 6.86
299 300 2.202298 GCGACCCAAATGAACGCG 60.202 61.111 3.53 3.53 39.90 6.01
300 301 2.178273 GGCGACCCAAATGAACGC 59.822 61.111 0.00 0.00 46.79 4.84
312 313 2.943653 CAACTTCAACGGGGCGAC 59.056 61.111 0.00 0.00 0.00 5.19
313 314 2.975799 GCAACTTCAACGGGGCGA 60.976 61.111 0.00 0.00 0.00 5.54
314 315 2.966309 GAGCAACTTCAACGGGGCG 61.966 63.158 0.00 0.00 0.00 6.13
315 316 0.321298 TAGAGCAACTTCAACGGGGC 60.321 55.000 0.00 0.00 0.00 5.80
316 317 2.076863 CTTAGAGCAACTTCAACGGGG 58.923 52.381 0.00 0.00 0.00 5.73
317 318 3.040147 TCTTAGAGCAACTTCAACGGG 57.960 47.619 0.00 0.00 0.00 5.28
318 319 4.058817 AGTTCTTAGAGCAACTTCAACGG 58.941 43.478 0.00 0.00 27.81 4.44
319 320 4.985409 AGAGTTCTTAGAGCAACTTCAACG 59.015 41.667 0.00 0.00 32.83 4.10
320 321 5.117897 CGAGAGTTCTTAGAGCAACTTCAAC 59.882 44.000 0.00 0.00 32.83 3.18
321 322 5.221263 ACGAGAGTTCTTAGAGCAACTTCAA 60.221 40.000 0.00 0.00 46.40 2.69
322 323 4.278669 ACGAGAGTTCTTAGAGCAACTTCA 59.721 41.667 0.00 0.00 46.40 3.02
323 324 4.800784 ACGAGAGTTCTTAGAGCAACTTC 58.199 43.478 0.00 0.00 46.40 3.01
324 325 4.857509 ACGAGAGTTCTTAGAGCAACTT 57.142 40.909 0.00 0.00 46.40 2.66
339 340 0.034960 TGACTGGAGGAGGACGAGAG 60.035 60.000 0.00 0.00 0.00 3.20
340 341 0.626382 ATGACTGGAGGAGGACGAGA 59.374 55.000 0.00 0.00 0.00 4.04
341 342 2.350057 TATGACTGGAGGAGGACGAG 57.650 55.000 0.00 0.00 0.00 4.18
342 343 2.443632 AGATATGACTGGAGGAGGACGA 59.556 50.000 0.00 0.00 0.00 4.20
343 344 2.817258 GAGATATGACTGGAGGAGGACG 59.183 54.545 0.00 0.00 0.00 4.79
344 345 3.826157 CTGAGATATGACTGGAGGAGGAC 59.174 52.174 0.00 0.00 0.00 3.85
345 346 3.724209 TCTGAGATATGACTGGAGGAGGA 59.276 47.826 0.00 0.00 0.00 3.71
346 347 3.826157 GTCTGAGATATGACTGGAGGAGG 59.174 52.174 0.00 0.00 0.00 4.30
347 348 4.278170 GTGTCTGAGATATGACTGGAGGAG 59.722 50.000 0.00 0.00 34.57 3.69
348 349 4.211125 GTGTCTGAGATATGACTGGAGGA 58.789 47.826 0.00 0.00 34.57 3.71
349 350 3.956848 TGTGTCTGAGATATGACTGGAGG 59.043 47.826 0.00 0.00 34.57 4.30
350 351 4.497173 CGTGTGTCTGAGATATGACTGGAG 60.497 50.000 0.00 0.00 34.57 3.86
351 352 3.378427 CGTGTGTCTGAGATATGACTGGA 59.622 47.826 0.00 0.00 34.57 3.86
352 353 3.700154 CGTGTGTCTGAGATATGACTGG 58.300 50.000 0.00 0.00 34.57 4.00
353 354 3.111838 GCGTGTGTCTGAGATATGACTG 58.888 50.000 0.00 0.00 34.57 3.51
354 355 2.223363 CGCGTGTGTCTGAGATATGACT 60.223 50.000 0.00 0.00 34.57 3.41
355 356 2.112522 CGCGTGTGTCTGAGATATGAC 58.887 52.381 0.00 0.00 0.00 3.06
356 357 1.065551 CCGCGTGTGTCTGAGATATGA 59.934 52.381 4.92 0.00 0.00 2.15
357 358 1.065551 TCCGCGTGTGTCTGAGATATG 59.934 52.381 4.92 0.00 0.00 1.78
358 359 1.335182 CTCCGCGTGTGTCTGAGATAT 59.665 52.381 4.92 0.00 0.00 1.63
359 360 0.733150 CTCCGCGTGTGTCTGAGATA 59.267 55.000 4.92 0.00 0.00 1.98
360 361 1.244697 ACTCCGCGTGTGTCTGAGAT 61.245 55.000 4.92 0.00 0.00 2.75
361 362 1.452953 AACTCCGCGTGTGTCTGAGA 61.453 55.000 4.92 0.00 0.00 3.27
362 363 1.004277 GAACTCCGCGTGTGTCTGAG 61.004 60.000 4.92 4.96 0.00 3.35
363 364 1.007734 GAACTCCGCGTGTGTCTGA 60.008 57.895 4.92 0.00 0.00 3.27
364 365 2.022129 GGAACTCCGCGTGTGTCTG 61.022 63.158 4.92 0.00 0.00 3.51
365 366 2.338984 GGAACTCCGCGTGTGTCT 59.661 61.111 4.92 0.00 0.00 3.41
384 385 1.444553 GTCAGAGGAACACGCGGAG 60.445 63.158 12.47 4.93 0.00 4.63
385 386 2.649034 GTCAGAGGAACACGCGGA 59.351 61.111 12.47 0.00 0.00 5.54
386 387 2.432628 GGTCAGAGGAACACGCGG 60.433 66.667 12.47 1.27 0.00 6.46
387 388 0.600255 AAAGGTCAGAGGAACACGCG 60.600 55.000 3.53 3.53 31.21 6.01
388 389 1.264288 CAAAAGGTCAGAGGAACACGC 59.736 52.381 0.00 0.00 31.21 5.34
389 390 2.561569 ACAAAAGGTCAGAGGAACACG 58.438 47.619 0.00 0.00 31.21 4.49
390 391 4.983671 AAACAAAAGGTCAGAGGAACAC 57.016 40.909 0.00 0.00 31.21 3.32
391 392 5.013547 TGAAAACAAAAGGTCAGAGGAACA 58.986 37.500 0.00 0.00 31.21 3.18
392 393 5.576447 TGAAAACAAAAGGTCAGAGGAAC 57.424 39.130 0.00 0.00 0.00 3.62
393 394 6.379703 TGAATGAAAACAAAAGGTCAGAGGAA 59.620 34.615 0.00 0.00 0.00 3.36
394 395 5.890985 TGAATGAAAACAAAAGGTCAGAGGA 59.109 36.000 0.00 0.00 0.00 3.71
395 396 6.039717 TCTGAATGAAAACAAAAGGTCAGAGG 59.960 38.462 0.00 0.00 36.30 3.69
396 397 6.914757 GTCTGAATGAAAACAAAAGGTCAGAG 59.085 38.462 0.00 0.00 40.51 3.35
397 398 6.376864 TGTCTGAATGAAAACAAAAGGTCAGA 59.623 34.615 0.00 0.00 38.28 3.27
398 399 6.563422 TGTCTGAATGAAAACAAAAGGTCAG 58.437 36.000 0.00 0.00 34.01 3.51
399 400 6.522625 TGTCTGAATGAAAACAAAAGGTCA 57.477 33.333 0.00 0.00 0.00 4.02
400 401 7.035612 AGTTGTCTGAATGAAAACAAAAGGTC 58.964 34.615 0.00 0.00 43.61 3.85
401 402 6.935167 AGTTGTCTGAATGAAAACAAAAGGT 58.065 32.000 0.00 0.00 43.61 3.50
402 403 7.832503 AAGTTGTCTGAATGAAAACAAAAGG 57.167 32.000 0.00 0.00 43.61 3.11
403 404 9.023967 CCTAAGTTGTCTGAATGAAAACAAAAG 57.976 33.333 0.00 0.00 43.61 2.27
404 405 8.527810 ACCTAAGTTGTCTGAATGAAAACAAAA 58.472 29.630 0.00 0.00 43.61 2.44
405 406 8.062065 ACCTAAGTTGTCTGAATGAAAACAAA 57.938 30.769 0.00 0.00 43.61 2.83
406 407 7.639113 ACCTAAGTTGTCTGAATGAAAACAA 57.361 32.000 0.00 0.00 43.61 2.83
407 408 8.918202 ATACCTAAGTTGTCTGAATGAAAACA 57.082 30.769 0.00 0.00 43.61 2.83
409 410 9.162764 GCTATACCTAAGTTGTCTGAATGAAAA 57.837 33.333 0.00 0.00 0.00 2.29
410 411 8.540388 AGCTATACCTAAGTTGTCTGAATGAAA 58.460 33.333 0.00 0.00 0.00 2.69
411 412 7.981789 CAGCTATACCTAAGTTGTCTGAATGAA 59.018 37.037 0.00 0.00 0.00 2.57
412 413 7.417911 CCAGCTATACCTAAGTTGTCTGAATGA 60.418 40.741 0.00 0.00 0.00 2.57
413 414 6.703607 CCAGCTATACCTAAGTTGTCTGAATG 59.296 42.308 0.00 0.00 0.00 2.67
414 415 6.384305 ACCAGCTATACCTAAGTTGTCTGAAT 59.616 38.462 0.00 0.00 0.00 2.57
415 416 5.720041 ACCAGCTATACCTAAGTTGTCTGAA 59.280 40.000 0.00 0.00 0.00 3.02
416 417 5.127194 CACCAGCTATACCTAAGTTGTCTGA 59.873 44.000 0.00 0.00 0.00 3.27
417 418 5.105310 ACACCAGCTATACCTAAGTTGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
418 419 5.024118 ACACCAGCTATACCTAAGTTGTCT 58.976 41.667 0.00 0.00 0.00 3.41
419 420 5.109903 CACACCAGCTATACCTAAGTTGTC 58.890 45.833 0.00 0.00 0.00 3.18
420 421 4.081087 CCACACCAGCTATACCTAAGTTGT 60.081 45.833 0.00 0.00 0.00 3.32
421 422 4.081087 ACCACACCAGCTATACCTAAGTTG 60.081 45.833 0.00 0.00 0.00 3.16
422 423 4.101856 ACCACACCAGCTATACCTAAGTT 58.898 43.478 0.00 0.00 0.00 2.66
423 424 3.721021 ACCACACCAGCTATACCTAAGT 58.279 45.455 0.00 0.00 0.00 2.24
424 425 4.755266 AACCACACCAGCTATACCTAAG 57.245 45.455 0.00 0.00 0.00 2.18
425 426 5.508280 AAAACCACACCAGCTATACCTAA 57.492 39.130 0.00 0.00 0.00 2.69
426 427 5.249852 AGAAAAACCACACCAGCTATACCTA 59.750 40.000 0.00 0.00 0.00 3.08
427 428 4.042934 AGAAAAACCACACCAGCTATACCT 59.957 41.667 0.00 0.00 0.00 3.08
428 429 4.332828 AGAAAAACCACACCAGCTATACC 58.667 43.478 0.00 0.00 0.00 2.73
437 438 4.173256 CTGTGTCAAAGAAAAACCACACC 58.827 43.478 0.00 0.00 34.49 4.16
443 444 3.130340 TGGCTCCTGTGTCAAAGAAAAAC 59.870 43.478 0.00 0.00 0.00 2.43
455 456 1.714794 CTACGAACTTGGCTCCTGTG 58.285 55.000 0.00 0.00 0.00 3.66
456 457 0.037232 GCTACGAACTTGGCTCCTGT 60.037 55.000 0.00 0.00 0.00 4.00
457 458 0.741221 GGCTACGAACTTGGCTCCTG 60.741 60.000 0.00 0.00 0.00 3.86
458 459 1.597461 GGCTACGAACTTGGCTCCT 59.403 57.895 0.00 0.00 0.00 3.69
459 460 1.810030 CGGCTACGAACTTGGCTCC 60.810 63.158 0.00 0.00 44.60 4.70
496 505 3.251479 TGGTGTCTGCTATGCTACTTG 57.749 47.619 0.00 0.00 0.00 3.16
497 506 3.981071 TTGGTGTCTGCTATGCTACTT 57.019 42.857 0.00 0.00 0.00 2.24
498 507 3.981071 TTTGGTGTCTGCTATGCTACT 57.019 42.857 0.00 0.00 0.00 2.57
499 508 4.878397 AGATTTTGGTGTCTGCTATGCTAC 59.122 41.667 0.00 0.00 0.00 3.58
500 509 5.102953 AGATTTTGGTGTCTGCTATGCTA 57.897 39.130 0.00 0.00 0.00 3.49
501 510 3.944015 GAGATTTTGGTGTCTGCTATGCT 59.056 43.478 0.00 0.00 0.00 3.79
502 511 3.242543 CGAGATTTTGGTGTCTGCTATGC 60.243 47.826 0.00 0.00 0.00 3.14
503 512 4.183865 TCGAGATTTTGGTGTCTGCTATG 58.816 43.478 0.00 0.00 0.00 2.23
533 542 1.605232 GGGTTTGTTGTTACCGTCTGG 59.395 52.381 0.00 0.00 42.84 3.86
679 693 1.754380 CGGGTGAGTGGGACTTGTGA 61.754 60.000 0.00 0.00 0.00 3.58
680 694 1.301716 CGGGTGAGTGGGACTTGTG 60.302 63.158 0.00 0.00 0.00 3.33
681 695 3.148084 CGGGTGAGTGGGACTTGT 58.852 61.111 0.00 0.00 0.00 3.16
682 696 2.358737 GCGGGTGAGTGGGACTTG 60.359 66.667 0.00 0.00 0.00 3.16
683 697 2.185310 GATGCGGGTGAGTGGGACTT 62.185 60.000 0.00 0.00 0.00 3.01
707 722 4.329545 TGTGTTCGGGGCAGGAGC 62.330 66.667 0.00 0.00 41.10 4.70
845 860 3.380471 TGGAGAAAGAGGGAGAGAGAG 57.620 52.381 0.00 0.00 0.00 3.20
846 861 4.029520 CAATGGAGAAAGAGGGAGAGAGA 58.970 47.826 0.00 0.00 0.00 3.10
847 862 3.432046 GCAATGGAGAAAGAGGGAGAGAG 60.432 52.174 0.00 0.00 0.00 3.20
848 863 2.503356 GCAATGGAGAAAGAGGGAGAGA 59.497 50.000 0.00 0.00 0.00 3.10
849 864 2.504996 AGCAATGGAGAAAGAGGGAGAG 59.495 50.000 0.00 0.00 0.00 3.20
850 865 2.238144 CAGCAATGGAGAAAGAGGGAGA 59.762 50.000 0.00 0.00 0.00 3.71
854 869 1.101331 GCCAGCAATGGAGAAAGAGG 58.899 55.000 0.00 0.00 0.00 3.69
957 972 2.033372 CCCCAAAACTAAACCAACGGT 58.967 47.619 0.00 0.00 37.65 4.83
958 973 1.269883 GCCCCAAAACTAAACCAACGG 60.270 52.381 0.00 0.00 0.00 4.44
966 981 2.888414 GCAGTAACAGCCCCAAAACTAA 59.112 45.455 0.00 0.00 0.00 2.24
968 983 1.328279 GCAGTAACAGCCCCAAAACT 58.672 50.000 0.00 0.00 0.00 2.66
977 992 0.602905 AACCTCACGGCAGTAACAGC 60.603 55.000 0.00 0.00 0.00 4.40
978 993 1.148310 CAACCTCACGGCAGTAACAG 58.852 55.000 0.00 0.00 0.00 3.16
981 998 0.753867 TCACAACCTCACGGCAGTAA 59.246 50.000 0.00 0.00 0.00 2.24
994 1011 2.126888 CGTTGCCGCCATCACAAC 60.127 61.111 0.00 0.00 40.17 3.32
1368 1385 4.499019 GGACTCGCAGGAGAAGAAGATAAG 60.499 50.000 0.00 0.00 43.27 1.73
1385 1402 4.135153 CGTCTGGGCCAGGACTCG 62.135 72.222 32.23 24.73 31.51 4.18
1388 1405 1.671379 GTTTCGTCTGGGCCAGGAC 60.671 63.158 32.23 25.03 31.51 3.85
1492 1513 2.099592 CAGCTCTCAGCACCTCTCTTAG 59.900 54.545 0.00 0.00 45.56 2.18
1508 1529 4.748144 CCAACCCCCTGCCAGCTC 62.748 72.222 0.00 0.00 0.00 4.09
1526 1547 1.933812 TCCACCTCCCCCAATTCCC 60.934 63.158 0.00 0.00 0.00 3.97
1551 1581 2.604912 AAACCTTCTCCCATGGTTCC 57.395 50.000 11.73 0.00 40.83 3.62
1624 1654 2.406616 CCGGACGGCCATTGGAAAG 61.407 63.158 8.76 0.00 0.00 2.62
1686 1728 4.502016 TGACATGAGAAGAGCAGACAATC 58.498 43.478 0.00 0.00 0.00 2.67
1722 1764 2.126071 ACCACGCGTGAATCTCCG 60.126 61.111 39.10 22.60 0.00 4.63
1740 1782 3.003173 TCCTTCCCACGGCAGAGG 61.003 66.667 0.00 0.00 0.00 3.69
1825 1867 7.431249 AGCATAATCAGATACAATTTGCCTTG 58.569 34.615 0.00 0.00 0.00 3.61
2003 2045 8.461222 TGACATCATCAATAATTTTGTCCAGAC 58.539 33.333 0.00 0.00 33.02 3.51
2174 2225 5.578157 TTTTGGTCCTAAGTTCCTAGCTT 57.422 39.130 0.00 0.00 0.00 3.74
2175 2226 5.578157 TTTTTGGTCCTAAGTTCCTAGCT 57.422 39.130 0.00 0.00 0.00 3.32
2255 2307 5.967674 GGCTGAACTGAATAAATTCATGTCG 59.032 40.000 5.88 0.00 44.92 4.35
2257 2309 6.839124 TGGCTGAACTGAATAAATTCATGT 57.161 33.333 5.88 4.46 44.92 3.21
2261 2313 7.276438 GGATGTTTGGCTGAACTGAATAAATTC 59.724 37.037 6.03 0.00 37.31 2.17
2271 2323 3.019564 GCTATGGATGTTTGGCTGAACT 58.980 45.455 6.03 0.00 0.00 3.01
2467 2519 4.203654 GTCCAGTACCAAAGACTTAGGG 57.796 50.000 4.66 4.66 0.00 3.53
2651 2704 9.791801 TGCCTGAAATGAGCTAATGTAATAATA 57.208 29.630 0.00 0.00 0.00 0.98
2690 2743 7.553044 GGTTATGAAACAGAGCATTACCTTAGT 59.447 37.037 0.00 0.00 39.71 2.24
2803 2857 5.163205 CCCAAATTTTTCCAGGAAAGGAACT 60.163 40.000 14.50 0.00 46.85 3.01
2865 2919 7.615365 AGCATCCTAATCCAAATACTTTGACAA 59.385 33.333 1.28 0.00 43.26 3.18
2965 3020 3.018856 CCAGAGCCAGTTGCATGAATAA 58.981 45.455 0.00 0.00 44.83 1.40
2971 3026 0.987294 ACTACCAGAGCCAGTTGCAT 59.013 50.000 0.00 0.00 44.83 3.96
3003 3058 6.368779 TCCAGTATTACTATTACCCATGGC 57.631 41.667 6.09 0.00 0.00 4.40
3085 3148 6.993079 AGAACAGAGTTTTGTCCAAGTTTTT 58.007 32.000 0.00 0.00 0.00 1.94
3177 3241 3.620821 GCCATAAGAAGCTTCTGACTGAC 59.379 47.826 29.09 15.02 37.65 3.51
3181 3245 6.934048 AATAAGCCATAAGAAGCTTCTGAC 57.066 37.500 29.09 16.07 46.11 3.51
3254 3321 5.990996 GCTTTGGAATCAGAAATGGTTTCAA 59.009 36.000 5.36 0.00 42.10 2.69
3451 3518 3.712016 TTTGCAGCAGGGTTCATAGTA 57.288 42.857 0.00 0.00 0.00 1.82
3566 3633 3.451902 ACATGTTATGATTTGCCCTTGGG 59.548 43.478 0.32 0.32 0.00 4.12
3578 3645 6.101005 TCAGGTGGATTATGGACATGTTATGA 59.899 38.462 0.00 0.00 0.00 2.15
3580 3647 6.101734 AGTCAGGTGGATTATGGACATGTTAT 59.898 38.462 0.00 0.51 0.00 1.89
3588 3655 3.643320 CAGCTAGTCAGGTGGATTATGGA 59.357 47.826 0.00 0.00 44.83 3.41
3601 3668 0.881796 CAGACACGGTCAGCTAGTCA 59.118 55.000 6.78 0.00 34.60 3.41
3626 3693 0.810016 AGACTAGCGGACGAAACTCC 59.190 55.000 0.00 0.00 0.00 3.85
3650 3717 2.250939 CGTGCCGTTCTTGCAAGGA 61.251 57.895 25.73 15.86 41.06 3.36
3668 3735 5.205565 CGACTGAAGAAACAAAAAGTAGGC 58.794 41.667 0.00 0.00 0.00 3.93
3747 3816 3.286751 CGCCAACACACACCCCAG 61.287 66.667 0.00 0.00 0.00 4.45
3771 3840 3.436035 CCAAAAGGCTAAGGGGGTATACC 60.436 52.174 13.99 13.99 39.11 2.73
3925 3994 1.696063 ACACCTGCAAGCACATCTTT 58.304 45.000 0.00 0.00 31.27 2.52
3948 4017 8.151596 AGTACTACATACGATGATCTGAGAAGA 58.848 37.037 0.00 0.00 38.97 2.87
3949 4018 8.317891 AGTACTACATACGATGATCTGAGAAG 57.682 38.462 0.00 0.00 38.97 2.85
3951 4020 8.678593 AAAGTACTACATACGATGATCTGAGA 57.321 34.615 0.00 0.00 38.97 3.27
3955 4024 9.953697 GAAGAAAAGTACTACATACGATGATCT 57.046 33.333 0.00 0.00 38.97 2.75
3977 4046 7.202102 ATCATGTTCATCTGATGATCTGGAAGA 60.202 37.037 20.16 12.25 37.84 2.87
3978 4047 6.289064 TCATGTTCATCTGATGATCTGGAAG 58.711 40.000 20.16 7.99 39.39 3.46
4138 4207 6.920569 ACCATCTAATTAAACAGTTAGCCG 57.079 37.500 0.00 0.00 0.00 5.52
4249 4321 2.476051 CACAAGTCATGCGCCGTC 59.524 61.111 4.18 0.00 0.00 4.79
4297 4369 6.168389 ACTTTCATTTTCATTCATTCCCTGC 58.832 36.000 0.00 0.00 0.00 4.85
4339 4412 7.285340 AGTAGATAGTTCCTTCCCCAAAAAT 57.715 36.000 0.00 0.00 0.00 1.82
4345 4418 5.279556 GCACATAGTAGATAGTTCCTTCCCC 60.280 48.000 0.00 0.00 0.00 4.81
4346 4420 5.540719 AGCACATAGTAGATAGTTCCTTCCC 59.459 44.000 0.00 0.00 0.00 3.97
4407 4481 7.288560 TCTTATATTACAGGACGGAGAGAGTT 58.711 38.462 0.00 0.00 0.00 3.01
4446 4520 7.359595 GTCATCTGTCATGTACTCTCTACATC 58.640 42.308 0.00 0.00 36.13 3.06
4513 4587 2.337583 TCTGTTGCGAGCAGACATTAC 58.662 47.619 11.35 2.15 37.98 1.89
4551 4625 2.036089 CCTACCCCGCTCTACTGAAATC 59.964 54.545 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.