Multiple sequence alignment - TraesCS3D01G248900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G248900 chr3D 100.000 5327 0 0 1 5327 348153710 348148384 0.000000e+00 9838.0
1 TraesCS3D01G248900 chr3D 82.229 619 77 18 3780 4379 31802636 31803240 2.210000e-138 503.0
2 TraesCS3D01G248900 chr3B 93.209 3858 121 41 773 4603 447977341 447973598 0.000000e+00 5542.0
3 TraesCS3D01G248900 chr3B 84.704 523 58 13 3780 4284 53959053 53959571 2.210000e-138 503.0
4 TraesCS3D01G248900 chr3B 82.245 490 53 20 3780 4251 54315304 54315777 5.000000e-105 392.0
5 TraesCS3D01G248900 chr3B 88.961 154 6 2 4591 4743 447972370 447972227 4.240000e-41 180.0
6 TraesCS3D01G248900 chr3B 90.076 131 11 2 4679 4808 447972226 447972097 9.180000e-38 169.0
7 TraesCS3D01G248900 chr3A 96.480 2244 58 9 1254 3480 467098929 467096690 0.000000e+00 3687.0
8 TraesCS3D01G248900 chr3A 95.679 1296 44 5 3518 4804 467096696 467095404 0.000000e+00 2073.0
9 TraesCS3D01G248900 chr3A 93.634 487 20 4 773 1255 467099490 467099011 0.000000e+00 717.0
10 TraesCS3D01G248900 chr3A 86.834 319 26 5 3201 3507 662791211 662791525 5.110000e-90 342.0
11 TraesCS3D01G248900 chr1D 94.687 527 18 3 4811 5327 113842242 113841716 0.000000e+00 809.0
12 TraesCS3D01G248900 chr1D 83.077 390 42 9 3202 3591 345238559 345238924 3.070000e-87 333.0
13 TraesCS3D01G248900 chr7A 93.928 527 22 3 4811 5327 705450934 705450408 0.000000e+00 787.0
14 TraesCS3D01G248900 chr7A 92.992 528 26 4 4811 5327 604831171 604830644 0.000000e+00 760.0
15 TraesCS3D01G248900 chr7A 91.429 525 35 6 4811 5325 97852854 97852330 0.000000e+00 712.0
16 TraesCS3D01G248900 chr7A 87.675 357 27 9 3197 3541 617691879 617692230 2.990000e-107 399.0
17 TraesCS3D01G248900 chr7A 82.911 158 16 1 39 185 254842455 254842612 1.200000e-26 132.0
18 TraesCS3D01G248900 chr4A 93.738 527 22 7 4811 5327 323895606 323895081 0.000000e+00 780.0
19 TraesCS3D01G248900 chr4A 89.943 527 42 4 4811 5327 468155686 468155161 0.000000e+00 669.0
20 TraesCS3D01G248900 chr4A 83.284 341 47 8 3201 3538 598046510 598046843 6.700000e-79 305.0
21 TraesCS3D01G248900 chr4A 88.479 217 13 4 3200 3405 706659854 706659639 8.860000e-63 252.0
22 TraesCS3D01G248900 chr4A 89.381 113 11 1 558 669 725741010 725741122 2.000000e-29 141.0
23 TraesCS3D01G248900 chr4A 89.000 100 11 0 1492 1591 681906781 681906682 2.010000e-24 124.0
24 TraesCS3D01G248900 chr2B 92.600 527 27 4 4811 5327 506150376 506149852 0.000000e+00 747.0
25 TraesCS3D01G248900 chr2B 80.055 366 57 8 3243 3594 531050160 531050523 1.900000e-64 257.0
26 TraesCS3D01G248900 chr4B 91.329 519 37 5 4815 5327 338430445 338429929 0.000000e+00 702.0
27 TraesCS3D01G248900 chr4B 89.943 527 43 3 4811 5327 643943274 643943800 0.000000e+00 671.0
28 TraesCS3D01G248900 chr4B 85.633 529 52 18 4811 5327 325018103 325017587 7.850000e-148 534.0
29 TraesCS3D01G248900 chr4B 87.047 193 15 4 565 747 502417820 502418012 5.410000e-50 209.0
30 TraesCS3D01G248900 chr4B 91.209 91 8 0 657 747 671777045 671776955 2.010000e-24 124.0
31 TraesCS3D01G248900 chr2D 91.082 527 36 4 4811 5327 387938781 387939306 0.000000e+00 702.0
32 TraesCS3D01G248900 chr2D 88.636 528 48 5 4811 5327 480564568 480564042 2.710000e-177 632.0
33 TraesCS3D01G248900 chr2D 90.099 202 9 1 39 229 234259424 234259625 8.860000e-63 252.0
34 TraesCS3D01G248900 chr2D 78.392 398 44 20 3202 3592 469720351 469719989 2.500000e-53 220.0
35 TraesCS3D01G248900 chr2D 84.713 157 14 1 39 185 343161971 343161815 1.200000e-31 148.0
36 TraesCS3D01G248900 chr2D 95.349 43 2 0 1 43 89199558 89199600 9.570000e-08 69.4
37 TraesCS3D01G248900 chr2D 95.349 43 2 0 1 43 104917390 104917348 9.570000e-08 69.4
38 TraesCS3D01G248900 chr7B 90.152 528 41 4 4811 5327 629017263 629016736 0.000000e+00 676.0
39 TraesCS3D01G248900 chr7B 91.005 189 16 1 560 747 189557217 189557029 2.460000e-63 254.0
40 TraesCS3D01G248900 chr7B 85.864 191 16 7 568 747 100006554 100006364 5.440000e-45 193.0
41 TraesCS3D01G248900 chr7B 93.023 43 3 0 1 43 510512178 510512220 4.450000e-06 63.9
42 TraesCS3D01G248900 chr6A 88.994 527 48 3 4811 5327 532536199 532535673 1.250000e-180 643.0
43 TraesCS3D01G248900 chr6A 84.727 550 36 13 39 543 157165271 157164725 1.710000e-139 507.0
44 TraesCS3D01G248900 chr6A 84.644 547 41 19 39 543 555991007 555990462 6.160000e-139 505.0
45 TraesCS3D01G248900 chr6A 86.058 208 19 3 553 750 16347104 16346897 1.160000e-51 215.0
46 TraesCS3D01G248900 chr7D 85.199 527 51 12 39 543 546693219 546692698 2.840000e-142 516.0
47 TraesCS3D01G248900 chr7D 86.070 402 36 8 3202 3592 374768121 374767729 1.070000e-111 414.0
48 TraesCS3D01G248900 chr7D 88.959 317 21 4 3202 3507 47847423 47847736 3.890000e-101 379.0
49 TraesCS3D01G248900 chr7D 80.556 396 57 17 3200 3590 22860542 22860922 2.430000e-73 287.0
50 TraesCS3D01G248900 chr7D 90.446 157 14 1 592 747 88843898 88843742 6.990000e-49 206.0
51 TraesCS3D01G248900 chr6D 83.708 356 37 10 3197 3538 266954097 266954445 3.100000e-82 316.0
52 TraesCS3D01G248900 chr5D 79.948 384 59 11 3201 3581 545942246 545941878 3.160000e-67 267.0
53 TraesCS3D01G248900 chr5D 87.879 198 14 4 560 747 439260503 439260306 1.930000e-54 224.0
54 TraesCS3D01G248900 chr5D 85.294 204 19 5 555 747 419794746 419794949 3.250000e-47 200.0
55 TraesCS3D01G248900 chr2A 84.229 279 29 7 107 370 764892891 764892613 1.900000e-64 257.0
56 TraesCS3D01G248900 chr6B 89.119 193 20 1 556 747 194932594 194932402 6.900000e-59 239.0
57 TraesCS3D01G248900 chr6B 84.270 178 9 4 580 747 623367322 623367490 7.140000e-34 156.0
58 TraesCS3D01G248900 chr5B 88.205 195 18 4 556 747 119132994 119133186 1.490000e-55 228.0
59 TraesCS3D01G248900 chr5B 97.727 44 1 0 1 44 222365248 222365205 5.720000e-10 76.8
60 TraesCS3D01G248900 chr1B 87.129 202 19 7 3357 3554 18852167 18851969 6.940000e-54 222.0
61 TraesCS3D01G248900 chr1A 86.869 198 16 5 560 747 536569468 536569665 4.180000e-51 213.0
62 TraesCS3D01G248900 chr1A 85.787 197 18 5 567 753 536238689 536238493 3.250000e-47 200.0
63 TraesCS3D01G248900 chr1A 78.656 253 16 11 3242 3478 364939806 364940036 3.350000e-27 134.0
64 TraesCS3D01G248900 chr4D 87.000 100 13 0 1492 1591 475149642 475149543 4.360000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G248900 chr3D 348148384 348153710 5326 True 9838.000000 9838 100.000000 1 5327 1 chr3D.!!$R1 5326
1 TraesCS3D01G248900 chr3D 31802636 31803240 604 False 503.000000 503 82.229000 3780 4379 1 chr3D.!!$F1 599
2 TraesCS3D01G248900 chr3B 447972097 447977341 5244 True 1963.666667 5542 90.748667 773 4808 3 chr3B.!!$R1 4035
3 TraesCS3D01G248900 chr3B 53959053 53959571 518 False 503.000000 503 84.704000 3780 4284 1 chr3B.!!$F1 504
4 TraesCS3D01G248900 chr3A 467095404 467099490 4086 True 2159.000000 3687 95.264333 773 4804 3 chr3A.!!$R1 4031
5 TraesCS3D01G248900 chr1D 113841716 113842242 526 True 809.000000 809 94.687000 4811 5327 1 chr1D.!!$R1 516
6 TraesCS3D01G248900 chr7A 705450408 705450934 526 True 787.000000 787 93.928000 4811 5327 1 chr7A.!!$R3 516
7 TraesCS3D01G248900 chr7A 604830644 604831171 527 True 760.000000 760 92.992000 4811 5327 1 chr7A.!!$R2 516
8 TraesCS3D01G248900 chr7A 97852330 97852854 524 True 712.000000 712 91.429000 4811 5325 1 chr7A.!!$R1 514
9 TraesCS3D01G248900 chr4A 323895081 323895606 525 True 780.000000 780 93.738000 4811 5327 1 chr4A.!!$R1 516
10 TraesCS3D01G248900 chr4A 468155161 468155686 525 True 669.000000 669 89.943000 4811 5327 1 chr4A.!!$R2 516
11 TraesCS3D01G248900 chr2B 506149852 506150376 524 True 747.000000 747 92.600000 4811 5327 1 chr2B.!!$R1 516
12 TraesCS3D01G248900 chr4B 338429929 338430445 516 True 702.000000 702 91.329000 4815 5327 1 chr4B.!!$R2 512
13 TraesCS3D01G248900 chr4B 643943274 643943800 526 False 671.000000 671 89.943000 4811 5327 1 chr4B.!!$F2 516
14 TraesCS3D01G248900 chr4B 325017587 325018103 516 True 534.000000 534 85.633000 4811 5327 1 chr4B.!!$R1 516
15 TraesCS3D01G248900 chr2D 387938781 387939306 525 False 702.000000 702 91.082000 4811 5327 1 chr2D.!!$F3 516
16 TraesCS3D01G248900 chr2D 480564042 480564568 526 True 632.000000 632 88.636000 4811 5327 1 chr2D.!!$R4 516
17 TraesCS3D01G248900 chr7B 629016736 629017263 527 True 676.000000 676 90.152000 4811 5327 1 chr7B.!!$R3 516
18 TraesCS3D01G248900 chr6A 532535673 532536199 526 True 643.000000 643 88.994000 4811 5327 1 chr6A.!!$R3 516
19 TraesCS3D01G248900 chr6A 157164725 157165271 546 True 507.000000 507 84.727000 39 543 1 chr6A.!!$R2 504
20 TraesCS3D01G248900 chr6A 555990462 555991007 545 True 505.000000 505 84.644000 39 543 1 chr6A.!!$R4 504
21 TraesCS3D01G248900 chr7D 546692698 546693219 521 True 516.000000 516 85.199000 39 543 1 chr7D.!!$R3 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 471 0.108585 AGGCTCCTTTTGCGTCAGAA 59.891 50.000 0.00 0.00 0.00 3.02 F
755 774 0.170784 CCAATTATGCTGTGCGTGCA 59.829 50.000 0.79 0.79 44.95 4.57 F
1244 1273 0.175302 CCTCATTCTCGTGCTGCTCT 59.825 55.000 0.00 0.00 0.00 4.09 F
1490 1606 0.250945 TGGTTTGCGCATAGGTGGAA 60.251 50.000 12.75 0.00 32.73 3.53 F
1708 1825 0.323999 GGCGGTTTCCCTACCCAATT 60.324 55.000 0.00 0.00 34.56 2.32 F
1709 1826 1.064537 GGCGGTTTCCCTACCCAATTA 60.065 52.381 0.00 0.00 34.56 1.40 F
3547 3680 1.075674 TGTGTTGCAATGGTGGGGT 60.076 52.632 0.59 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1392 0.608856 ACAAGCCGCATCAATCCACA 60.609 50.000 0.00 0.0 0.00 4.17 R
1709 1826 4.705023 GTGGCAAAAGACACAATATACCCT 59.295 41.667 0.00 0.0 37.54 4.34 R
3210 3342 1.628238 ATCCGCCGGGTGATGGTAAA 61.628 55.000 9.67 0.0 33.83 2.01 R
3482 3615 4.613944 CAACACATGTCTTGTTGCAGAAT 58.386 39.130 12.95 0.0 45.36 2.40 R
3565 3698 1.352056 GAGCCGTTAGATTTGCCGC 59.648 57.895 0.00 0.0 0.00 6.53 R
3585 3718 4.547905 ATGCTACGCGTCGGGTCG 62.548 66.667 18.63 13.7 0.00 4.79 R
4516 4739 0.176680 AGAAGCCGTGGACTATGCAG 59.823 55.000 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 147 5.912892 TGCCACGAACAAATCTATCAGATA 58.087 37.500 0.00 0.00 32.89 1.98
160 172 7.696992 AAAACAGAGTACCAGAAACAAAGAA 57.303 32.000 0.00 0.00 0.00 2.52
180 192 6.949352 AGAATTATTACCACAGATTGCCAG 57.051 37.500 0.00 0.00 0.00 4.85
204 216 3.449018 ACACACCATTGCCACTAACAAAA 59.551 39.130 0.00 0.00 0.00 2.44
230 242 4.651778 TCAGATTTTGTACCTGAACCTGG 58.348 43.478 0.00 0.00 34.38 4.45
244 256 5.123979 CCTGAACCTGGCAGTAAGTAATTTC 59.876 44.000 14.43 0.00 0.00 2.17
327 346 4.180496 GGCGGACGAACTGGTTAG 57.820 61.111 0.00 0.00 0.00 2.34
328 347 1.447314 GGCGGACGAACTGGTTAGG 60.447 63.158 0.00 0.00 0.00 2.69
329 348 1.588082 GCGGACGAACTGGTTAGGA 59.412 57.895 0.00 0.00 0.00 2.94
330 349 0.735287 GCGGACGAACTGGTTAGGAC 60.735 60.000 0.00 0.00 0.00 3.85
331 350 0.455633 CGGACGAACTGGTTAGGACG 60.456 60.000 0.00 0.00 34.52 4.79
332 351 0.883833 GGACGAACTGGTTAGGACGA 59.116 55.000 0.00 0.00 33.33 4.20
333 352 1.135460 GGACGAACTGGTTAGGACGAG 60.135 57.143 0.00 0.00 37.60 4.18
334 353 1.808945 GACGAACTGGTTAGGACGAGA 59.191 52.381 0.00 0.00 35.42 4.04
335 354 1.811359 ACGAACTGGTTAGGACGAGAG 59.189 52.381 0.00 0.00 35.42 3.20
336 355 2.082231 CGAACTGGTTAGGACGAGAGA 58.918 52.381 0.00 0.00 35.42 3.10
337 356 2.486982 CGAACTGGTTAGGACGAGAGAA 59.513 50.000 0.00 0.00 35.42 2.87
338 357 3.426426 CGAACTGGTTAGGACGAGAGAAG 60.426 52.174 0.00 0.00 35.42 2.85
339 358 3.436577 ACTGGTTAGGACGAGAGAAGA 57.563 47.619 0.00 0.00 35.42 2.87
340 359 3.970842 ACTGGTTAGGACGAGAGAAGAT 58.029 45.455 0.00 0.00 35.42 2.40
341 360 3.697045 ACTGGTTAGGACGAGAGAAGATG 59.303 47.826 0.00 0.00 35.42 2.90
342 361 3.024547 TGGTTAGGACGAGAGAAGATGG 58.975 50.000 0.00 0.00 0.00 3.51
343 362 3.288964 GGTTAGGACGAGAGAAGATGGA 58.711 50.000 0.00 0.00 0.00 3.41
344 363 3.316868 GGTTAGGACGAGAGAAGATGGAG 59.683 52.174 0.00 0.00 0.00 3.86
345 364 2.065899 AGGACGAGAGAAGATGGAGG 57.934 55.000 0.00 0.00 0.00 4.30
346 365 1.566703 AGGACGAGAGAAGATGGAGGA 59.433 52.381 0.00 0.00 0.00 3.71
347 366 1.953686 GGACGAGAGAAGATGGAGGAG 59.046 57.143 0.00 0.00 0.00 3.69
348 367 2.422235 GGACGAGAGAAGATGGAGGAGA 60.422 54.545 0.00 0.00 0.00 3.71
349 368 2.878406 GACGAGAGAAGATGGAGGAGAG 59.122 54.545 0.00 0.00 0.00 3.20
350 369 2.229792 CGAGAGAAGATGGAGGAGAGG 58.770 57.143 0.00 0.00 0.00 3.69
351 370 2.158682 CGAGAGAAGATGGAGGAGAGGA 60.159 54.545 0.00 0.00 0.00 3.71
352 371 3.686978 CGAGAGAAGATGGAGGAGAGGAA 60.687 52.174 0.00 0.00 0.00 3.36
353 372 3.636764 GAGAGAAGATGGAGGAGAGGAAC 59.363 52.174 0.00 0.00 0.00 3.62
354 373 3.012274 AGAGAAGATGGAGGAGAGGAACA 59.988 47.826 0.00 0.00 0.00 3.18
355 374 3.772025 GAGAAGATGGAGGAGAGGAACAA 59.228 47.826 0.00 0.00 0.00 2.83
356 375 3.517500 AGAAGATGGAGGAGAGGAACAAC 59.482 47.826 0.00 0.00 0.00 3.32
357 376 2.907892 AGATGGAGGAGAGGAACAACA 58.092 47.619 0.00 0.00 0.00 3.33
358 377 2.569404 AGATGGAGGAGAGGAACAACAC 59.431 50.000 0.00 0.00 0.00 3.32
359 378 1.801242 TGGAGGAGAGGAACAACACA 58.199 50.000 0.00 0.00 0.00 3.72
360 379 2.123589 TGGAGGAGAGGAACAACACAA 58.876 47.619 0.00 0.00 0.00 3.33
361 380 2.158813 TGGAGGAGAGGAACAACACAAC 60.159 50.000 0.00 0.00 0.00 3.32
362 381 2.495084 GAGGAGAGGAACAACACAACC 58.505 52.381 0.00 0.00 0.00 3.77
363 382 1.143073 AGGAGAGGAACAACACAACCC 59.857 52.381 0.00 0.00 0.00 4.11
364 383 1.133915 GGAGAGGAACAACACAACCCA 60.134 52.381 0.00 0.00 0.00 4.51
365 384 2.489073 GGAGAGGAACAACACAACCCAT 60.489 50.000 0.00 0.00 0.00 4.00
366 385 2.814336 GAGAGGAACAACACAACCCATC 59.186 50.000 0.00 0.00 0.00 3.51
367 386 2.443255 AGAGGAACAACACAACCCATCT 59.557 45.455 0.00 0.00 0.00 2.90
368 387 3.650942 AGAGGAACAACACAACCCATCTA 59.349 43.478 0.00 0.00 0.00 1.98
369 388 3.751518 AGGAACAACACAACCCATCTAC 58.248 45.455 0.00 0.00 0.00 2.59
370 389 2.482721 GGAACAACACAACCCATCTACG 59.517 50.000 0.00 0.00 0.00 3.51
371 390 2.922740 ACAACACAACCCATCTACGT 57.077 45.000 0.00 0.00 0.00 3.57
372 391 2.762745 ACAACACAACCCATCTACGTC 58.237 47.619 0.00 0.00 0.00 4.34
373 392 2.367567 ACAACACAACCCATCTACGTCT 59.632 45.455 0.00 0.00 0.00 4.18
374 393 2.993899 CAACACAACCCATCTACGTCTC 59.006 50.000 0.00 0.00 0.00 3.36
375 394 1.549170 ACACAACCCATCTACGTCTCC 59.451 52.381 0.00 0.00 0.00 3.71
376 395 1.134788 CACAACCCATCTACGTCTCCC 60.135 57.143 0.00 0.00 0.00 4.30
377 396 1.191535 CAACCCATCTACGTCTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
378 397 1.137086 CAACCCATCTACGTCTCCCAG 59.863 57.143 0.00 0.00 0.00 4.45
379 398 0.397254 ACCCATCTACGTCTCCCAGG 60.397 60.000 0.00 0.00 0.00 4.45
380 399 1.742768 CCATCTACGTCTCCCAGGC 59.257 63.158 0.00 0.00 0.00 4.85
381 400 1.043116 CCATCTACGTCTCCCAGGCA 61.043 60.000 0.00 0.00 0.00 4.75
382 401 0.824109 CATCTACGTCTCCCAGGCAA 59.176 55.000 0.00 0.00 0.00 4.52
383 402 0.824759 ATCTACGTCTCCCAGGCAAC 59.175 55.000 0.00 0.00 0.00 4.17
400 419 5.243426 GGCAACTTTACAGAAAACAGTGA 57.757 39.130 0.00 0.00 0.00 3.41
401 420 5.273944 GGCAACTTTACAGAAAACAGTGAG 58.726 41.667 0.00 0.00 0.00 3.51
402 421 5.273944 GCAACTTTACAGAAAACAGTGAGG 58.726 41.667 0.00 0.00 0.00 3.86
403 422 5.163652 GCAACTTTACAGAAAACAGTGAGGT 60.164 40.000 0.00 0.00 0.00 3.85
404 423 6.037830 GCAACTTTACAGAAAACAGTGAGGTA 59.962 38.462 0.00 0.00 0.00 3.08
405 424 7.407337 CAACTTTACAGAAAACAGTGAGGTAC 58.593 38.462 0.00 0.00 0.00 3.34
406 425 6.646267 ACTTTACAGAAAACAGTGAGGTACA 58.354 36.000 0.00 0.00 0.00 2.90
407 426 7.107542 ACTTTACAGAAAACAGTGAGGTACAA 58.892 34.615 0.00 0.00 0.00 2.41
408 427 7.280205 ACTTTACAGAAAACAGTGAGGTACAAG 59.720 37.037 0.00 0.00 0.00 3.16
409 428 5.099042 ACAGAAAACAGTGAGGTACAAGT 57.901 39.130 0.00 0.00 0.00 3.16
410 429 6.229936 ACAGAAAACAGTGAGGTACAAGTA 57.770 37.500 0.00 0.00 0.00 2.24
411 430 6.047231 ACAGAAAACAGTGAGGTACAAGTAC 58.953 40.000 0.00 1.77 35.40 2.73
422 441 3.380479 GTACAAGTACCTCACTGCACA 57.620 47.619 0.00 0.00 37.63 4.57
423 442 2.240493 ACAAGTACCTCACTGCACAC 57.760 50.000 0.00 0.00 37.63 3.82
424 443 1.762957 ACAAGTACCTCACTGCACACT 59.237 47.619 0.00 0.00 37.63 3.55
425 444 2.170607 ACAAGTACCTCACTGCACACTT 59.829 45.455 0.00 0.00 37.63 3.16
426 445 3.206150 CAAGTACCTCACTGCACACTTT 58.794 45.455 0.00 0.00 37.63 2.66
427 446 2.838736 AGTACCTCACTGCACACTTTG 58.161 47.619 0.00 0.00 35.62 2.77
435 454 2.639286 GCACACTTTGCGGACAGG 59.361 61.111 0.00 0.00 42.79 4.00
436 455 2.639286 CACACTTTGCGGACAGGC 59.361 61.111 0.00 0.00 0.00 4.85
437 456 1.893808 CACACTTTGCGGACAGGCT 60.894 57.895 0.00 0.00 0.00 4.58
438 457 1.598130 ACACTTTGCGGACAGGCTC 60.598 57.895 0.00 0.00 0.00 4.70
439 458 2.032681 ACTTTGCGGACAGGCTCC 59.967 61.111 0.00 0.00 35.33 4.70
440 459 2.348998 CTTTGCGGACAGGCTCCT 59.651 61.111 0.00 0.00 36.80 3.69
441 460 1.302832 CTTTGCGGACAGGCTCCTT 60.303 57.895 0.00 0.00 36.80 3.36
442 461 0.890996 CTTTGCGGACAGGCTCCTTT 60.891 55.000 0.00 0.00 36.80 3.11
443 462 0.467290 TTTGCGGACAGGCTCCTTTT 60.467 50.000 0.00 0.00 36.80 2.27
444 463 1.172180 TTGCGGACAGGCTCCTTTTG 61.172 55.000 0.00 0.00 36.80 2.44
445 464 2.982744 GCGGACAGGCTCCTTTTGC 61.983 63.158 0.00 0.00 36.80 3.68
446 465 2.680913 CGGACAGGCTCCTTTTGCG 61.681 63.158 0.00 0.00 36.80 4.85
447 466 1.600916 GGACAGGCTCCTTTTGCGT 60.601 57.895 0.00 0.00 35.89 5.24
448 467 1.578206 GGACAGGCTCCTTTTGCGTC 61.578 60.000 0.00 0.00 35.89 5.19
449 468 0.884704 GACAGGCTCCTTTTGCGTCA 60.885 55.000 0.00 0.00 0.00 4.35
450 469 0.886490 ACAGGCTCCTTTTGCGTCAG 60.886 55.000 0.00 0.00 0.00 3.51
451 470 0.603707 CAGGCTCCTTTTGCGTCAGA 60.604 55.000 0.00 0.00 0.00 3.27
452 471 0.108585 AGGCTCCTTTTGCGTCAGAA 59.891 50.000 0.00 0.00 0.00 3.02
453 472 0.519077 GGCTCCTTTTGCGTCAGAAG 59.481 55.000 4.03 4.03 0.00 2.85
454 473 1.230324 GCTCCTTTTGCGTCAGAAGT 58.770 50.000 8.51 0.00 0.00 3.01
455 474 1.069636 GCTCCTTTTGCGTCAGAAGTG 60.070 52.381 8.51 4.09 0.00 3.16
456 475 0.944386 TCCTTTTGCGTCAGAAGTGC 59.056 50.000 8.51 0.00 0.00 4.40
457 476 0.662619 CCTTTTGCGTCAGAAGTGCA 59.337 50.000 8.51 0.00 36.72 4.57
458 477 1.597937 CCTTTTGCGTCAGAAGTGCAC 60.598 52.381 9.40 9.40 38.55 4.57
459 478 0.380378 TTTTGCGTCAGAAGTGCACC 59.620 50.000 14.63 0.00 38.55 5.01
460 479 1.444119 TTTGCGTCAGAAGTGCACCC 61.444 55.000 14.63 5.93 38.55 4.61
461 480 3.050275 GCGTCAGAAGTGCACCCC 61.050 66.667 14.63 5.52 0.00 4.95
462 481 2.425592 CGTCAGAAGTGCACCCCA 59.574 61.111 14.63 0.00 0.00 4.96
463 482 1.961277 CGTCAGAAGTGCACCCCAC 60.961 63.158 14.63 2.61 45.01 4.61
472 491 4.736896 GCACCCCACGAGACCGAC 62.737 72.222 0.00 0.00 39.50 4.79
473 492 4.415332 CACCCCACGAGACCGACG 62.415 72.222 0.00 0.00 39.50 5.12
474 493 4.962836 ACCCCACGAGACCGACGT 62.963 66.667 0.00 0.00 44.83 4.34
485 504 3.368822 CCGACGTGGTCAAGGGTA 58.631 61.111 0.00 0.00 32.09 3.69
486 505 1.895238 CCGACGTGGTCAAGGGTAT 59.105 57.895 0.00 0.00 32.09 2.73
487 506 0.248289 CCGACGTGGTCAAGGGTATT 59.752 55.000 0.00 0.00 32.09 1.89
488 507 1.636988 CGACGTGGTCAAGGGTATTC 58.363 55.000 0.00 0.00 32.09 1.75
489 508 1.067425 CGACGTGGTCAAGGGTATTCA 60.067 52.381 0.00 0.00 32.09 2.57
490 509 2.344025 GACGTGGTCAAGGGTATTCAC 58.656 52.381 0.00 0.00 32.09 3.18
491 510 1.695242 ACGTGGTCAAGGGTATTCACA 59.305 47.619 0.00 0.00 0.00 3.58
492 511 2.304761 ACGTGGTCAAGGGTATTCACAT 59.695 45.455 0.00 0.00 0.00 3.21
493 512 2.677836 CGTGGTCAAGGGTATTCACATG 59.322 50.000 0.00 0.00 0.00 3.21
494 513 3.686016 GTGGTCAAGGGTATTCACATGT 58.314 45.455 0.00 0.00 0.00 3.21
495 514 4.621983 CGTGGTCAAGGGTATTCACATGTA 60.622 45.833 0.00 0.00 0.00 2.29
496 515 5.437060 GTGGTCAAGGGTATTCACATGTAT 58.563 41.667 0.00 0.00 0.00 2.29
497 516 5.527582 GTGGTCAAGGGTATTCACATGTATC 59.472 44.000 0.00 0.00 0.00 2.24
498 517 5.428457 TGGTCAAGGGTATTCACATGTATCT 59.572 40.000 0.00 0.00 0.00 1.98
499 518 5.760253 GGTCAAGGGTATTCACATGTATCTG 59.240 44.000 0.00 0.00 0.00 2.90
500 519 5.237344 GTCAAGGGTATTCACATGTATCTGC 59.763 44.000 0.00 0.00 0.00 4.26
501 520 4.357918 AGGGTATTCACATGTATCTGCC 57.642 45.455 0.00 0.00 0.00 4.85
502 521 3.716353 AGGGTATTCACATGTATCTGCCA 59.284 43.478 0.00 0.00 0.00 4.92
503 522 4.165950 AGGGTATTCACATGTATCTGCCAA 59.834 41.667 0.00 0.00 0.00 4.52
504 523 5.072741 GGGTATTCACATGTATCTGCCAAT 58.927 41.667 0.00 0.00 0.00 3.16
505 524 5.048504 GGGTATTCACATGTATCTGCCAATG 60.049 44.000 0.00 0.00 0.00 2.82
506 525 5.532406 GGTATTCACATGTATCTGCCAATGT 59.468 40.000 0.00 0.00 0.00 2.71
507 526 6.710295 GGTATTCACATGTATCTGCCAATGTA 59.290 38.462 0.00 0.00 0.00 2.29
508 527 7.391554 GGTATTCACATGTATCTGCCAATGTAT 59.608 37.037 0.00 0.00 0.00 2.29
509 528 6.622833 TTCACATGTATCTGCCAATGTATG 57.377 37.500 0.00 0.00 0.00 2.39
510 529 5.683681 TCACATGTATCTGCCAATGTATGT 58.316 37.500 0.00 0.00 0.00 2.29
511 530 6.825610 TCACATGTATCTGCCAATGTATGTA 58.174 36.000 0.00 0.00 0.00 2.29
512 531 6.705825 TCACATGTATCTGCCAATGTATGTAC 59.294 38.462 0.00 0.00 0.00 2.90
513 532 6.482973 CACATGTATCTGCCAATGTATGTACA 59.517 38.462 0.00 0.00 40.98 2.90
514 533 6.483307 ACATGTATCTGCCAATGTATGTACAC 59.517 38.462 0.00 0.00 39.30 2.90
515 534 6.233905 TGTATCTGCCAATGTATGTACACT 57.766 37.500 0.00 0.00 39.30 3.55
516 535 6.649155 TGTATCTGCCAATGTATGTACACTT 58.351 36.000 0.00 0.00 39.30 3.16
517 536 7.109501 TGTATCTGCCAATGTATGTACACTTT 58.890 34.615 0.00 0.00 39.30 2.66
518 537 6.683974 ATCTGCCAATGTATGTACACTTTC 57.316 37.500 0.00 0.00 39.30 2.62
519 538 4.941263 TCTGCCAATGTATGTACACTTTCC 59.059 41.667 0.00 0.00 39.30 3.13
520 539 4.013728 TGCCAATGTATGTACACTTTCCC 58.986 43.478 0.00 0.00 39.30 3.97
521 540 3.380320 GCCAATGTATGTACACTTTCCCC 59.620 47.826 0.00 0.00 39.30 4.81
522 541 3.625764 CCAATGTATGTACACTTTCCCCG 59.374 47.826 0.00 0.00 39.30 5.73
523 542 4.258543 CAATGTATGTACACTTTCCCCGT 58.741 43.478 0.00 0.00 39.30 5.28
524 543 4.563140 ATGTATGTACACTTTCCCCGTT 57.437 40.909 0.00 0.00 39.30 4.44
525 544 4.354893 TGTATGTACACTTTCCCCGTTT 57.645 40.909 0.00 0.00 0.00 3.60
526 545 4.317488 TGTATGTACACTTTCCCCGTTTC 58.683 43.478 0.00 0.00 0.00 2.78
527 546 3.495434 ATGTACACTTTCCCCGTTTCA 57.505 42.857 0.00 0.00 0.00 2.69
528 547 3.278668 TGTACACTTTCCCCGTTTCAA 57.721 42.857 0.00 0.00 0.00 2.69
529 548 2.944349 TGTACACTTTCCCCGTTTCAAC 59.056 45.455 0.00 0.00 0.00 3.18
543 562 2.679355 TTCAACGAATTTGAGGTGCG 57.321 45.000 0.00 0.00 45.22 5.34
544 563 1.872388 TCAACGAATTTGAGGTGCGA 58.128 45.000 0.00 0.00 39.45 5.10
545 564 2.422597 TCAACGAATTTGAGGTGCGAT 58.577 42.857 0.00 0.00 39.45 4.58
546 565 2.415168 TCAACGAATTTGAGGTGCGATC 59.585 45.455 0.00 0.00 39.45 3.69
547 566 2.093306 ACGAATTTGAGGTGCGATCA 57.907 45.000 0.00 0.00 0.00 2.92
548 567 2.002586 ACGAATTTGAGGTGCGATCAG 58.997 47.619 0.00 0.00 0.00 2.90
558 577 3.711348 GCGATCAGCTGGCACTAC 58.289 61.111 15.13 0.00 44.04 2.73
559 578 2.233654 GCGATCAGCTGGCACTACG 61.234 63.158 15.13 11.43 44.04 3.51
560 579 1.433471 CGATCAGCTGGCACTACGA 59.567 57.895 15.13 0.00 0.00 3.43
561 580 0.593518 CGATCAGCTGGCACTACGAG 60.594 60.000 15.13 0.00 0.00 4.18
569 588 3.867055 CTGGCACTACGAGCATAATTG 57.133 47.619 0.00 0.00 0.00 2.32
570 589 2.545526 CTGGCACTACGAGCATAATTGG 59.454 50.000 0.00 0.00 0.00 3.16
571 590 2.093181 TGGCACTACGAGCATAATTGGT 60.093 45.455 0.00 0.00 35.95 3.67
572 591 2.943033 GGCACTACGAGCATAATTGGTT 59.057 45.455 0.00 0.00 32.62 3.67
573 592 3.377172 GGCACTACGAGCATAATTGGTTT 59.623 43.478 0.00 0.00 32.62 3.27
574 593 4.342772 GCACTACGAGCATAATTGGTTTG 58.657 43.478 0.00 0.00 32.62 2.93
575 594 4.342772 CACTACGAGCATAATTGGTTTGC 58.657 43.478 0.00 0.00 32.62 3.68
576 595 4.006989 ACTACGAGCATAATTGGTTTGCA 58.993 39.130 0.00 0.00 38.84 4.08
577 596 3.492421 ACGAGCATAATTGGTTTGCAG 57.508 42.857 0.00 0.00 38.84 4.41
578 597 2.819608 ACGAGCATAATTGGTTTGCAGT 59.180 40.909 0.00 0.00 38.84 4.40
579 598 3.119849 ACGAGCATAATTGGTTTGCAGTC 60.120 43.478 0.00 0.00 38.84 3.51
580 599 3.119884 CGAGCATAATTGGTTTGCAGTCA 60.120 43.478 0.00 0.00 38.84 3.41
581 600 4.615682 CGAGCATAATTGGTTTGCAGTCAA 60.616 41.667 0.00 0.00 38.84 3.18
582 601 5.410355 AGCATAATTGGTTTGCAGTCAAT 57.590 34.783 5.71 5.71 38.84 2.57
583 602 6.528537 AGCATAATTGGTTTGCAGTCAATA 57.471 33.333 10.28 2.96 38.84 1.90
584 603 7.116075 AGCATAATTGGTTTGCAGTCAATAT 57.884 32.000 10.28 5.70 38.84 1.28
585 604 7.558604 AGCATAATTGGTTTGCAGTCAATATT 58.441 30.769 10.28 0.00 38.84 1.28
586 605 8.042515 AGCATAATTGGTTTGCAGTCAATATTT 58.957 29.630 10.28 1.98 38.84 1.40
587 606 8.117988 GCATAATTGGTTTGCAGTCAATATTTG 58.882 33.333 10.28 9.50 36.40 2.32
588 607 8.605746 CATAATTGGTTTGCAGTCAATATTTGG 58.394 33.333 10.28 0.00 31.70 3.28
589 608 3.924144 TGGTTTGCAGTCAATATTTGGC 58.076 40.909 0.00 0.00 34.90 4.52
591 610 4.040217 TGGTTTGCAGTCAATATTTGGCTT 59.960 37.500 0.00 0.00 44.65 4.35
592 611 4.389687 GGTTTGCAGTCAATATTTGGCTTG 59.610 41.667 0.00 0.00 44.65 4.01
593 612 3.235157 TGCAGTCAATATTTGGCTTGC 57.765 42.857 8.39 8.39 44.65 4.01
594 613 2.094078 TGCAGTCAATATTTGGCTTGCC 60.094 45.455 4.43 4.43 44.65 4.52
595 614 2.094078 GCAGTCAATATTTGGCTTGCCA 60.094 45.455 10.65 10.65 44.65 4.92
596 615 3.617045 GCAGTCAATATTTGGCTTGCCAA 60.617 43.478 21.59 21.59 44.65 4.52
597 616 4.178540 CAGTCAATATTTGGCTTGCCAAG 58.821 43.478 23.64 13.92 44.65 3.61
598 617 3.834231 AGTCAATATTTGGCTTGCCAAGT 59.166 39.130 23.64 22.99 44.65 3.16
599 618 3.928375 GTCAATATTTGGCTTGCCAAGTG 59.072 43.478 25.74 20.54 31.13 3.16
600 619 3.577848 TCAATATTTGGCTTGCCAAGTGT 59.422 39.130 25.74 19.15 0.00 3.55
601 620 4.040217 TCAATATTTGGCTTGCCAAGTGTT 59.960 37.500 25.74 22.82 0.00 3.32
602 621 2.243602 ATTTGGCTTGCCAAGTGTTG 57.756 45.000 23.64 0.00 0.00 3.33
627 646 8.830201 GGCATTACCAAATATTGCAATATCAA 57.170 30.769 27.77 17.64 40.47 2.57
628 647 8.928733 GGCATTACCAAATATTGCAATATCAAG 58.071 33.333 27.77 20.87 40.47 3.02
629 648 9.695526 GCATTACCAAATATTGCAATATCAAGA 57.304 29.630 27.77 14.57 39.14 3.02
634 653 7.707893 ACCAAATATTGCAATATCAAGACTTGC 59.292 33.333 27.77 10.57 44.25 4.01
635 654 7.170320 CCAAATATTGCAATATCAAGACTTGCC 59.830 37.037 27.77 0.00 43.54 4.52
636 655 6.964807 ATATTGCAATATCAAGACTTGCCA 57.035 33.333 23.43 0.00 43.54 4.92
637 656 5.664294 ATTGCAATATCAAGACTTGCCAA 57.336 34.783 11.02 6.92 43.54 4.52
638 657 4.439305 TGCAATATCAAGACTTGCCAAC 57.561 40.909 10.50 0.00 43.54 3.77
639 658 4.081406 TGCAATATCAAGACTTGCCAACT 58.919 39.130 10.50 0.00 43.54 3.16
640 659 5.252547 TGCAATATCAAGACTTGCCAACTA 58.747 37.500 10.50 0.00 43.54 2.24
641 660 5.887598 TGCAATATCAAGACTTGCCAACTAT 59.112 36.000 10.50 0.56 43.54 2.12
642 661 6.377996 TGCAATATCAAGACTTGCCAACTATT 59.622 34.615 10.50 5.87 43.54 1.73
643 662 6.694411 GCAATATCAAGACTTGCCAACTATTG 59.306 38.462 10.50 15.64 39.42 1.90
655 674 4.320608 CCAACTATTGGCAACTTTGTGT 57.679 40.909 0.00 0.00 45.17 3.72
656 675 4.050553 CCAACTATTGGCAACTTTGTGTG 58.949 43.478 0.00 0.00 45.17 3.82
657 676 4.202101 CCAACTATTGGCAACTTTGTGTGA 60.202 41.667 0.00 0.00 45.17 3.58
658 677 4.836125 ACTATTGGCAACTTTGTGTGAG 57.164 40.909 0.00 0.00 37.61 3.51
659 678 4.460263 ACTATTGGCAACTTTGTGTGAGA 58.540 39.130 0.00 0.00 37.61 3.27
660 679 5.072741 ACTATTGGCAACTTTGTGTGAGAT 58.927 37.500 0.00 0.00 37.61 2.75
661 680 6.237901 ACTATTGGCAACTTTGTGTGAGATA 58.762 36.000 0.00 0.00 37.61 1.98
662 681 5.633830 ATTGGCAACTTTGTGTGAGATAG 57.366 39.130 0.00 0.00 37.61 2.08
663 682 3.411446 TGGCAACTTTGTGTGAGATAGG 58.589 45.455 0.00 0.00 37.61 2.57
664 683 2.162408 GGCAACTTTGTGTGAGATAGGC 59.838 50.000 0.00 0.00 0.00 3.93
665 684 2.813754 GCAACTTTGTGTGAGATAGGCA 59.186 45.455 0.00 0.00 0.00 4.75
666 685 3.253188 GCAACTTTGTGTGAGATAGGCAA 59.747 43.478 0.00 0.00 0.00 4.52
667 686 4.614535 GCAACTTTGTGTGAGATAGGCAAG 60.615 45.833 0.00 0.00 0.00 4.01
668 687 4.623932 ACTTTGTGTGAGATAGGCAAGA 57.376 40.909 0.00 0.00 0.00 3.02
669 688 4.973168 ACTTTGTGTGAGATAGGCAAGAA 58.027 39.130 0.00 0.00 0.00 2.52
670 689 4.757149 ACTTTGTGTGAGATAGGCAAGAAC 59.243 41.667 0.00 0.00 0.00 3.01
671 690 3.334583 TGTGTGAGATAGGCAAGAACC 57.665 47.619 0.00 0.00 0.00 3.62
672 691 2.637382 TGTGTGAGATAGGCAAGAACCA 59.363 45.455 0.00 0.00 0.00 3.67
673 692 3.072330 TGTGTGAGATAGGCAAGAACCAA 59.928 43.478 0.00 0.00 0.00 3.67
674 693 3.437049 GTGTGAGATAGGCAAGAACCAAC 59.563 47.826 0.00 0.00 0.00 3.77
675 694 3.010420 GTGAGATAGGCAAGAACCAACC 58.990 50.000 0.00 0.00 0.00 3.77
676 695 2.642311 TGAGATAGGCAAGAACCAACCA 59.358 45.455 0.00 0.00 0.00 3.67
677 696 3.073798 TGAGATAGGCAAGAACCAACCAA 59.926 43.478 0.00 0.00 0.00 3.67
678 697 3.690460 AGATAGGCAAGAACCAACCAAG 58.310 45.455 0.00 0.00 0.00 3.61
679 698 3.074538 AGATAGGCAAGAACCAACCAAGT 59.925 43.478 0.00 0.00 0.00 3.16
680 699 4.288626 AGATAGGCAAGAACCAACCAAGTA 59.711 41.667 0.00 0.00 0.00 2.24
681 700 2.863809 AGGCAAGAACCAACCAAGTAG 58.136 47.619 0.00 0.00 0.00 2.57
682 701 2.174854 AGGCAAGAACCAACCAAGTAGT 59.825 45.455 0.00 0.00 0.00 2.73
683 702 3.393278 AGGCAAGAACCAACCAAGTAGTA 59.607 43.478 0.00 0.00 0.00 1.82
684 703 3.751698 GGCAAGAACCAACCAAGTAGTAG 59.248 47.826 0.00 0.00 0.00 2.57
685 704 3.188667 GCAAGAACCAACCAAGTAGTAGC 59.811 47.826 0.00 0.00 0.00 3.58
686 705 3.697619 AGAACCAACCAAGTAGTAGCC 57.302 47.619 0.00 0.00 0.00 3.93
687 706 2.976882 AGAACCAACCAAGTAGTAGCCA 59.023 45.455 0.00 0.00 0.00 4.75
688 707 3.393278 AGAACCAACCAAGTAGTAGCCAA 59.607 43.478 0.00 0.00 0.00 4.52
689 708 4.042934 AGAACCAACCAAGTAGTAGCCAAT 59.957 41.667 0.00 0.00 0.00 3.16
690 709 5.249852 AGAACCAACCAAGTAGTAGCCAATA 59.750 40.000 0.00 0.00 0.00 1.90
691 710 5.710409 ACCAACCAAGTAGTAGCCAATAT 57.290 39.130 0.00 0.00 0.00 1.28
692 711 6.074698 ACCAACCAAGTAGTAGCCAATATT 57.925 37.500 0.00 0.00 0.00 1.28
693 712 6.490492 ACCAACCAAGTAGTAGCCAATATTT 58.510 36.000 0.00 0.00 0.00 1.40
694 713 6.377146 ACCAACCAAGTAGTAGCCAATATTTG 59.623 38.462 0.00 0.00 0.00 2.32
725 744 5.692613 CCAAACATTGGCATGTCAATTTT 57.307 34.783 22.67 19.43 43.34 1.82
726 745 6.074544 CCAAACATTGGCATGTCAATTTTT 57.925 33.333 24.48 24.48 43.34 1.94
727 746 7.199541 CCAAACATTGGCATGTCAATTTTTA 57.800 32.000 27.70 3.38 43.34 1.52
728 747 7.299586 CCAAACATTGGCATGTCAATTTTTAG 58.700 34.615 27.70 20.56 43.34 1.85
729 748 7.041235 CCAAACATTGGCATGTCAATTTTTAGT 60.041 33.333 27.70 18.15 43.34 2.24
730 749 8.986847 CAAACATTGGCATGTCAATTTTTAGTA 58.013 29.630 27.70 1.25 43.34 1.82
731 750 8.761575 AACATTGGCATGTCAATTTTTAGTAG 57.238 30.769 22.67 11.37 43.34 2.57
732 751 6.813152 ACATTGGCATGTCAATTTTTAGTAGC 59.187 34.615 22.67 0.00 39.69 3.58
733 752 5.973899 TGGCATGTCAATTTTTAGTAGCA 57.026 34.783 0.00 0.00 0.00 3.49
734 753 6.338214 TGGCATGTCAATTTTTAGTAGCAA 57.662 33.333 0.00 0.00 0.00 3.91
735 754 6.753180 TGGCATGTCAATTTTTAGTAGCAAA 58.247 32.000 0.00 0.00 0.00 3.68
736 755 6.644592 TGGCATGTCAATTTTTAGTAGCAAAC 59.355 34.615 0.00 0.00 0.00 2.93
737 756 6.090763 GGCATGTCAATTTTTAGTAGCAAACC 59.909 38.462 0.00 0.00 0.00 3.27
738 757 6.644592 GCATGTCAATTTTTAGTAGCAAACCA 59.355 34.615 0.00 0.00 0.00 3.67
739 758 7.170658 GCATGTCAATTTTTAGTAGCAAACCAA 59.829 33.333 0.00 0.00 0.00 3.67
740 759 9.206870 CATGTCAATTTTTAGTAGCAAACCAAT 57.793 29.630 0.00 0.00 0.00 3.16
741 760 9.777297 ATGTCAATTTTTAGTAGCAAACCAATT 57.223 25.926 0.00 0.00 0.00 2.32
745 764 9.971744 CAATTTTTAGTAGCAAACCAATTATGC 57.028 29.630 0.00 0.00 40.34 3.14
751 770 1.655099 GCAAACCAATTATGCTGTGCG 59.345 47.619 0.00 0.00 37.12 5.34
752 771 2.926159 GCAAACCAATTATGCTGTGCGT 60.926 45.455 0.00 0.00 37.12 5.24
753 772 2.634982 AACCAATTATGCTGTGCGTG 57.365 45.000 0.00 0.00 0.00 5.34
754 773 0.171007 ACCAATTATGCTGTGCGTGC 59.829 50.000 0.00 0.00 0.00 5.34
755 774 0.170784 CCAATTATGCTGTGCGTGCA 59.829 50.000 0.79 0.79 44.95 4.57
756 775 1.541475 CAATTATGCTGTGCGTGCAG 58.459 50.000 0.00 4.39 44.04 4.41
757 776 0.452987 AATTATGCTGTGCGTGCAGG 59.547 50.000 1.01 1.01 44.04 4.85
758 777 0.392863 ATTATGCTGTGCGTGCAGGA 60.393 50.000 11.29 7.56 44.04 3.86
759 778 0.605050 TTATGCTGTGCGTGCAGGAA 60.605 50.000 11.29 0.00 44.04 3.36
760 779 1.020861 TATGCTGTGCGTGCAGGAAG 61.021 55.000 11.29 5.28 44.04 3.46
761 780 3.730761 GCTGTGCGTGCAGGAAGG 61.731 66.667 11.29 0.00 37.00 3.46
762 781 3.730761 CTGTGCGTGCAGGAAGGC 61.731 66.667 11.29 0.00 33.11 4.35
768 787 4.400961 GTGCAGGAAGGCCGCTCT 62.401 66.667 0.00 0.00 39.96 4.09
769 788 4.087892 TGCAGGAAGGCCGCTCTC 62.088 66.667 0.00 0.00 39.96 3.20
770 789 4.087892 GCAGGAAGGCCGCTCTCA 62.088 66.667 0.00 0.00 39.96 3.27
771 790 2.125350 CAGGAAGGCCGCTCTCAC 60.125 66.667 0.00 0.00 39.96 3.51
775 794 2.604686 AAGGCCGCTCTCACCAGA 60.605 61.111 0.00 0.00 0.00 3.86
986 1015 5.397559 CCTCGAAACCCACCTAAATCCTATT 60.398 44.000 0.00 0.00 0.00 1.73
1053 1082 2.117051 GAAGGTACGGAGGGGAAGAAT 58.883 52.381 0.00 0.00 0.00 2.40
1244 1273 0.175302 CCTCATTCTCGTGCTGCTCT 59.825 55.000 0.00 0.00 0.00 4.09
1280 1392 8.643324 AGTTGTAGTTTTCTAGTCACTGAATCT 58.357 33.333 0.00 0.00 32.55 2.40
1290 1402 5.432680 AGTCACTGAATCTGTGGATTGAT 57.567 39.130 18.00 0.00 41.68 2.57
1322 1434 2.180159 TTGGGGGCGCAGAGAAGTAC 62.180 60.000 10.83 0.00 0.00 2.73
1404 1517 2.088423 TCAATTTGGTATGCCACGACC 58.912 47.619 0.24 0.00 46.01 4.79
1405 1518 1.815613 CAATTTGGTATGCCACGACCA 59.184 47.619 0.24 0.00 46.01 4.02
1407 1520 0.958382 TTTGGTATGCCACGACCAGC 60.958 55.000 0.24 0.00 46.23 4.85
1410 1523 0.529992 GGTATGCCACGACCAGCTAC 60.530 60.000 0.00 0.00 35.65 3.58
1412 1525 2.011741 TATGCCACGACCAGCTACGG 62.012 60.000 10.81 0.66 0.00 4.02
1423 1536 0.872388 CAGCTACGGTTGTTTGGACC 59.128 55.000 0.00 0.00 0.00 4.46
1427 1540 1.877443 CTACGGTTGTTTGGACCTTGG 59.123 52.381 0.00 0.00 34.95 3.61
1428 1541 0.753848 ACGGTTGTTTGGACCTTGGG 60.754 55.000 0.00 0.00 34.95 4.12
1448 1564 5.450453 TGGGGTGTTCTTGATTTTTAGTGA 58.550 37.500 0.00 0.00 0.00 3.41
1451 1567 6.206498 GGGTGTTCTTGATTTTTAGTGACAC 58.794 40.000 0.00 0.00 0.00 3.67
1490 1606 0.250945 TGGTTTGCGCATAGGTGGAA 60.251 50.000 12.75 0.00 32.73 3.53
1636 1752 4.344104 ACCAAGCCTTAACTGTTATGCAT 58.656 39.130 18.70 3.79 0.00 3.96
1637 1753 5.505780 ACCAAGCCTTAACTGTTATGCATA 58.494 37.500 18.70 1.16 0.00 3.14
1708 1825 0.323999 GGCGGTTTCCCTACCCAATT 60.324 55.000 0.00 0.00 34.56 2.32
1709 1826 1.064537 GGCGGTTTCCCTACCCAATTA 60.065 52.381 0.00 0.00 34.56 1.40
1938 2055 7.579589 TGTTTCATTGTTCAACTTCAGTTTG 57.420 32.000 0.00 0.00 35.83 2.93
2083 2201 8.812329 CAAAAGTAAAATGACGAAACCAATCAA 58.188 29.630 0.00 0.00 0.00 2.57
2085 2203 7.924103 AGTAAAATGACGAAACCAATCAAAC 57.076 32.000 0.00 0.00 0.00 2.93
2086 2204 7.484975 AGTAAAATGACGAAACCAATCAAACA 58.515 30.769 0.00 0.00 0.00 2.83
2183 2302 3.758554 GTGGCATCAGGACTTATTTGTGT 59.241 43.478 0.00 0.00 0.00 3.72
2210 2329 9.237187 TCTGTTGCCAATGTTAATGAAGTAATA 57.763 29.630 0.00 0.00 0.00 0.98
2560 2680 7.710676 TGGTGTTATTAACTGCCATTATTGT 57.289 32.000 14.86 0.00 34.17 2.71
3210 3342 7.039082 TGCAAGCTATTTAAATTGGGAAACTCT 60.039 33.333 5.91 0.00 0.00 3.24
3385 3517 5.694458 ACGTTTTGCAACAAAACTTCTCTTT 59.306 32.000 25.08 6.13 37.83 2.52
3407 3539 4.908736 TCGAAGTTTTTCTGCAACAAGAG 58.091 39.130 0.00 0.00 0.00 2.85
3409 3541 4.423732 GAAGTTTTTCTGCAACAAGAGCA 58.576 39.130 0.00 0.00 40.19 4.26
3411 3543 3.193267 AGTTTTTCTGCAACAAGAGCACA 59.807 39.130 0.00 0.00 37.02 4.57
3547 3680 1.075674 TGTGTTGCAATGGTGGGGT 60.076 52.632 0.59 0.00 0.00 4.95
3579 3712 2.708514 CTTGATGCGGCAAATCTAACG 58.291 47.619 6.82 0.00 0.00 3.18
3585 3718 1.352056 GGCAAATCTAACGGCTCGC 59.648 57.895 0.00 0.00 0.00 5.03
3646 3779 6.377996 TGAAGCAAAACATGTAGGCAATAGAT 59.622 34.615 15.81 0.00 0.00 1.98
4089 4237 6.310224 GCCGTTATTGTTTCATGCTTTACATT 59.690 34.615 0.00 0.00 36.64 2.71
4242 4460 7.811713 GCAAAGAAATTCAGAAATAGTGAAGCT 59.188 33.333 0.00 0.00 37.35 3.74
4292 4510 0.246912 GCGAGCAACGAAGAATCACG 60.247 55.000 7.46 0.00 45.77 4.35
4310 4533 0.727122 CGCTCCAAAAAGAAGCGCAG 60.727 55.000 11.47 0.00 41.94 5.18
4391 4614 3.149196 AGTAGTTGAACACCTGCCATTG 58.851 45.455 0.00 0.00 0.00 2.82
4400 4623 2.108250 ACACCTGCCATTGAAGTAGGTT 59.892 45.455 0.00 0.00 46.79 3.50
4443 4666 4.082463 TGGTGAAACAGACAAACCTTCAAC 60.082 41.667 0.00 0.00 39.98 3.18
4478 4701 4.207165 ACATTGTAGTCTGTTTGTTGGCT 58.793 39.130 0.00 0.00 0.00 4.75
4516 4739 2.019984 CCAGGAGTATTGCAGCTTTCC 58.980 52.381 0.00 0.00 0.00 3.13
4651 6122 2.572104 ACAAGGGTATCTCCAAGGACAC 59.428 50.000 0.00 0.00 38.11 3.67
4750 6286 1.829970 TGGTGCATCAAAACGCCCA 60.830 52.632 0.00 0.00 35.51 5.36
4760 6296 3.157881 TCAAAACGCCCATAAACATCCA 58.842 40.909 0.00 0.00 0.00 3.41
4790 6327 4.276431 TGTTTACGGAAGTTTTGATGGACC 59.724 41.667 0.00 0.00 46.40 4.46
4792 6329 0.802494 CGGAAGTTTTGATGGACCGG 59.198 55.000 0.00 0.00 36.08 5.28
4804 6341 0.034574 TGGACCGGCAGCATGTTTAT 60.035 50.000 0.00 0.00 39.31 1.40
4806 6343 2.294074 GGACCGGCAGCATGTTTATAA 58.706 47.619 0.00 0.00 39.31 0.98
4807 6344 2.884639 GGACCGGCAGCATGTTTATAAT 59.115 45.455 0.00 0.00 39.31 1.28
4808 6345 4.069304 GGACCGGCAGCATGTTTATAATA 58.931 43.478 0.00 0.00 39.31 0.98
4809 6346 4.154195 GGACCGGCAGCATGTTTATAATAG 59.846 45.833 0.00 0.00 39.31 1.73
4810 6347 4.714632 ACCGGCAGCATGTTTATAATAGT 58.285 39.130 0.00 0.00 39.31 2.12
4811 6348 5.860611 ACCGGCAGCATGTTTATAATAGTA 58.139 37.500 0.00 0.00 39.31 1.82
4812 6349 6.472887 ACCGGCAGCATGTTTATAATAGTAT 58.527 36.000 0.00 0.00 39.31 2.12
4813 6350 6.594159 ACCGGCAGCATGTTTATAATAGTATC 59.406 38.462 0.00 0.00 39.31 2.24
4945 6491 4.282195 AGTTGTGTGTTCCAAAAGACCAAA 59.718 37.500 0.00 0.00 0.00 3.28
5090 6641 4.207891 AGGTGATTTGATGAGCGTAGTT 57.792 40.909 0.00 0.00 0.00 2.24
5122 6674 1.611491 CGCCTCCTTTACTTGGCAAAA 59.389 47.619 0.00 0.00 45.13 2.44
5176 6729 4.651503 CGGCTATATATGGAGAGTGGGAAT 59.348 45.833 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.582734 TTAAGCTACGCGGGAAGGGC 62.583 60.000 12.47 5.09 36.05 5.19
13 14 0.106149 ATTAAGCTACGCGGGAAGGG 59.894 55.000 12.47 0.00 38.93 3.95
14 15 1.202486 TCATTAAGCTACGCGGGAAGG 60.202 52.381 12.47 0.00 0.00 3.46
15 16 2.128035 CTCATTAAGCTACGCGGGAAG 58.872 52.381 12.47 5.99 0.00 3.46
16 17 1.479323 ACTCATTAAGCTACGCGGGAA 59.521 47.619 12.47 0.00 0.00 3.97
17 18 1.108776 ACTCATTAAGCTACGCGGGA 58.891 50.000 12.47 0.00 0.00 5.14
18 19 1.935933 AACTCATTAAGCTACGCGGG 58.064 50.000 12.47 3.66 0.00 6.13
19 20 5.652744 ATTAAACTCATTAAGCTACGCGG 57.347 39.130 12.47 0.00 36.94 6.46
20 21 7.399523 AGAAATTAAACTCATTAAGCTACGCG 58.600 34.615 3.53 3.53 36.94 6.01
21 22 7.851472 GGAGAAATTAAACTCATTAAGCTACGC 59.149 37.037 0.00 0.00 36.94 4.42
22 23 8.336080 GGGAGAAATTAAACTCATTAAGCTACG 58.664 37.037 0.00 0.00 36.94 3.51
23 24 9.397280 AGGGAGAAATTAAACTCATTAAGCTAC 57.603 33.333 0.00 0.00 36.94 3.58
24 25 9.396022 CAGGGAGAAATTAAACTCATTAAGCTA 57.604 33.333 0.00 0.00 36.94 3.32
25 26 8.109634 TCAGGGAGAAATTAAACTCATTAAGCT 58.890 33.333 0.00 0.00 36.94 3.74
26 27 8.184848 GTCAGGGAGAAATTAAACTCATTAAGC 58.815 37.037 0.00 0.00 36.94 3.09
27 28 9.231297 TGTCAGGGAGAAATTAAACTCATTAAG 57.769 33.333 0.00 0.00 36.94 1.85
28 29 9.581289 TTGTCAGGGAGAAATTAAACTCATTAA 57.419 29.630 0.00 0.00 37.86 1.40
29 30 9.581289 TTTGTCAGGGAGAAATTAAACTCATTA 57.419 29.630 0.00 0.00 35.17 1.90
30 31 8.477419 TTTGTCAGGGAGAAATTAAACTCATT 57.523 30.769 0.00 0.00 35.17 2.57
31 32 8.477419 TTTTGTCAGGGAGAAATTAAACTCAT 57.523 30.769 0.00 0.00 35.17 2.90
32 33 7.470009 GCTTTTGTCAGGGAGAAATTAAACTCA 60.470 37.037 0.00 0.00 35.17 3.41
33 34 6.863645 GCTTTTGTCAGGGAGAAATTAAACTC 59.136 38.462 0.00 0.00 0.00 3.01
34 35 6.551227 AGCTTTTGTCAGGGAGAAATTAAACT 59.449 34.615 0.00 0.00 0.00 2.66
35 36 6.749139 AGCTTTTGTCAGGGAGAAATTAAAC 58.251 36.000 0.00 0.00 0.00 2.01
36 37 6.976934 AGCTTTTGTCAGGGAGAAATTAAA 57.023 33.333 0.00 0.00 0.00 1.52
37 38 6.015434 GGAAGCTTTTGTCAGGGAGAAATTAA 60.015 38.462 0.00 0.00 0.00 1.40
135 147 7.696992 TCTTTGTTTCTGGTACTCTGTTTTT 57.303 32.000 0.00 0.00 0.00 1.94
160 172 5.133221 GTCCTGGCAATCTGTGGTAATAAT 58.867 41.667 0.00 0.00 0.00 1.28
180 192 1.539827 GTTAGTGGCAATGGTGTGTCC 59.460 52.381 0.00 0.00 0.00 4.02
204 216 7.106239 CAGGTTCAGGTACAAAATCTGATAGT 58.894 38.462 8.06 0.00 35.97 2.12
222 234 5.007682 GGAAATTACTTACTGCCAGGTTCA 58.992 41.667 0.00 0.00 0.00 3.18
230 242 6.509418 TGGATGTTGGAAATTACTTACTGC 57.491 37.500 0.00 0.00 0.00 4.40
244 256 4.002982 TCGACTGAAAGAATGGATGTTGG 58.997 43.478 0.00 0.00 37.43 3.77
322 341 3.288964 TCCATCTTCTCTCGTCCTAACC 58.711 50.000 0.00 0.00 0.00 2.85
323 342 3.316868 CCTCCATCTTCTCTCGTCCTAAC 59.683 52.174 0.00 0.00 0.00 2.34
324 343 3.202373 TCCTCCATCTTCTCTCGTCCTAA 59.798 47.826 0.00 0.00 0.00 2.69
325 344 2.778270 TCCTCCATCTTCTCTCGTCCTA 59.222 50.000 0.00 0.00 0.00 2.94
326 345 1.566703 TCCTCCATCTTCTCTCGTCCT 59.433 52.381 0.00 0.00 0.00 3.85
327 346 1.953686 CTCCTCCATCTTCTCTCGTCC 59.046 57.143 0.00 0.00 0.00 4.79
328 347 2.878406 CTCTCCTCCATCTTCTCTCGTC 59.122 54.545 0.00 0.00 0.00 4.20
329 348 2.422803 CCTCTCCTCCATCTTCTCTCGT 60.423 54.545 0.00 0.00 0.00 4.18
330 349 2.158682 TCCTCTCCTCCATCTTCTCTCG 60.159 54.545 0.00 0.00 0.00 4.04
331 350 3.593442 TCCTCTCCTCCATCTTCTCTC 57.407 52.381 0.00 0.00 0.00 3.20
332 351 3.012274 TGTTCCTCTCCTCCATCTTCTCT 59.988 47.826 0.00 0.00 0.00 3.10
333 352 3.370104 TGTTCCTCTCCTCCATCTTCTC 58.630 50.000 0.00 0.00 0.00 2.87
334 353 3.481559 TGTTCCTCTCCTCCATCTTCT 57.518 47.619 0.00 0.00 0.00 2.85
335 354 3.261897 TGTTGTTCCTCTCCTCCATCTTC 59.738 47.826 0.00 0.00 0.00 2.87
336 355 3.008485 GTGTTGTTCCTCTCCTCCATCTT 59.992 47.826 0.00 0.00 0.00 2.40
337 356 2.569404 GTGTTGTTCCTCTCCTCCATCT 59.431 50.000 0.00 0.00 0.00 2.90
338 357 2.303022 TGTGTTGTTCCTCTCCTCCATC 59.697 50.000 0.00 0.00 0.00 3.51
339 358 2.338809 TGTGTTGTTCCTCTCCTCCAT 58.661 47.619 0.00 0.00 0.00 3.41
340 359 1.801242 TGTGTTGTTCCTCTCCTCCA 58.199 50.000 0.00 0.00 0.00 3.86
341 360 2.495084 GTTGTGTTGTTCCTCTCCTCC 58.505 52.381 0.00 0.00 0.00 4.30
342 361 2.495084 GGTTGTGTTGTTCCTCTCCTC 58.505 52.381 0.00 0.00 0.00 3.71
343 362 1.143073 GGGTTGTGTTGTTCCTCTCCT 59.857 52.381 0.00 0.00 0.00 3.69
344 363 1.133915 TGGGTTGTGTTGTTCCTCTCC 60.134 52.381 0.00 0.00 0.00 3.71
345 364 2.341846 TGGGTTGTGTTGTTCCTCTC 57.658 50.000 0.00 0.00 0.00 3.20
346 365 2.443255 AGATGGGTTGTGTTGTTCCTCT 59.557 45.455 0.00 0.00 0.00 3.69
347 366 2.863809 AGATGGGTTGTGTTGTTCCTC 58.136 47.619 0.00 0.00 0.00 3.71
348 367 3.751518 GTAGATGGGTTGTGTTGTTCCT 58.248 45.455 0.00 0.00 0.00 3.36
349 368 2.482721 CGTAGATGGGTTGTGTTGTTCC 59.517 50.000 0.00 0.00 0.00 3.62
350 369 3.135994 ACGTAGATGGGTTGTGTTGTTC 58.864 45.455 0.00 0.00 0.00 3.18
351 370 3.135994 GACGTAGATGGGTTGTGTTGTT 58.864 45.455 0.00 0.00 0.00 2.83
352 371 2.367567 AGACGTAGATGGGTTGTGTTGT 59.632 45.455 0.00 0.00 0.00 3.32
353 372 2.993899 GAGACGTAGATGGGTTGTGTTG 59.006 50.000 0.00 0.00 0.00 3.33
354 373 2.028385 GGAGACGTAGATGGGTTGTGTT 60.028 50.000 0.00 0.00 0.00 3.32
355 374 1.549170 GGAGACGTAGATGGGTTGTGT 59.451 52.381 0.00 0.00 0.00 3.72
356 375 1.134788 GGGAGACGTAGATGGGTTGTG 60.135 57.143 0.00 0.00 0.00 3.33
357 376 1.192428 GGGAGACGTAGATGGGTTGT 58.808 55.000 0.00 0.00 0.00 3.32
358 377 1.137086 CTGGGAGACGTAGATGGGTTG 59.863 57.143 0.00 0.00 0.00 3.77
359 378 1.486211 CTGGGAGACGTAGATGGGTT 58.514 55.000 0.00 0.00 0.00 4.11
360 379 0.397254 CCTGGGAGACGTAGATGGGT 60.397 60.000 0.00 0.00 0.00 4.51
361 380 1.749334 GCCTGGGAGACGTAGATGGG 61.749 65.000 0.00 0.00 0.00 4.00
362 381 1.043116 TGCCTGGGAGACGTAGATGG 61.043 60.000 0.00 0.00 0.00 3.51
363 382 0.824109 TTGCCTGGGAGACGTAGATG 59.176 55.000 0.00 0.00 0.00 2.90
364 383 0.824759 GTTGCCTGGGAGACGTAGAT 59.175 55.000 0.00 0.00 0.00 1.98
365 384 0.251653 AGTTGCCTGGGAGACGTAGA 60.252 55.000 0.00 0.00 0.00 2.59
366 385 0.608640 AAGTTGCCTGGGAGACGTAG 59.391 55.000 0.00 0.00 0.00 3.51
367 386 1.053424 AAAGTTGCCTGGGAGACGTA 58.947 50.000 0.00 0.00 0.00 3.57
368 387 1.053424 TAAAGTTGCCTGGGAGACGT 58.947 50.000 0.00 0.00 0.00 4.34
369 388 1.270625 TGTAAAGTTGCCTGGGAGACG 60.271 52.381 0.00 0.00 0.00 4.18
370 389 2.038557 TCTGTAAAGTTGCCTGGGAGAC 59.961 50.000 0.00 0.00 0.00 3.36
371 390 2.334977 TCTGTAAAGTTGCCTGGGAGA 58.665 47.619 0.00 0.00 0.00 3.71
372 391 2.859165 TCTGTAAAGTTGCCTGGGAG 57.141 50.000 0.00 0.00 0.00 4.30
373 392 3.586470 TTTCTGTAAAGTTGCCTGGGA 57.414 42.857 0.00 0.00 0.00 4.37
374 393 3.383185 TGTTTTCTGTAAAGTTGCCTGGG 59.617 43.478 0.00 0.00 0.00 4.45
375 394 4.097892 ACTGTTTTCTGTAAAGTTGCCTGG 59.902 41.667 0.00 0.00 0.00 4.45
376 395 5.036737 CACTGTTTTCTGTAAAGTTGCCTG 58.963 41.667 0.00 0.00 0.00 4.85
377 396 4.947388 TCACTGTTTTCTGTAAAGTTGCCT 59.053 37.500 0.00 0.00 0.00 4.75
378 397 5.243426 TCACTGTTTTCTGTAAAGTTGCC 57.757 39.130 0.00 0.00 0.00 4.52
379 398 5.163652 ACCTCACTGTTTTCTGTAAAGTTGC 60.164 40.000 0.00 0.00 0.00 4.17
380 399 6.436843 ACCTCACTGTTTTCTGTAAAGTTG 57.563 37.500 0.00 0.00 0.00 3.16
381 400 7.107542 TGTACCTCACTGTTTTCTGTAAAGTT 58.892 34.615 0.00 0.00 0.00 2.66
382 401 6.646267 TGTACCTCACTGTTTTCTGTAAAGT 58.354 36.000 0.00 0.00 0.00 2.66
383 402 7.280205 ACTTGTACCTCACTGTTTTCTGTAAAG 59.720 37.037 0.00 0.00 0.00 1.85
384 403 7.107542 ACTTGTACCTCACTGTTTTCTGTAAA 58.892 34.615 0.00 0.00 0.00 2.01
385 404 6.646267 ACTTGTACCTCACTGTTTTCTGTAA 58.354 36.000 0.00 0.00 0.00 2.41
386 405 6.229936 ACTTGTACCTCACTGTTTTCTGTA 57.770 37.500 0.00 0.00 0.00 2.74
387 406 5.099042 ACTTGTACCTCACTGTTTTCTGT 57.901 39.130 0.00 0.00 0.00 3.41
388 407 5.465724 GGTACTTGTACCTCACTGTTTTCTG 59.534 44.000 19.48 0.00 37.16 3.02
389 408 5.608449 GGTACTTGTACCTCACTGTTTTCT 58.392 41.667 19.48 0.00 37.16 2.52
390 409 5.919272 GGTACTTGTACCTCACTGTTTTC 57.081 43.478 19.48 0.00 37.16 2.29
401 420 2.036733 TGTGCAGTGAGGTACTTGTACC 59.963 50.000 19.22 19.22 41.55 3.34
402 421 3.057734 GTGTGCAGTGAGGTACTTGTAC 58.942 50.000 0.00 2.55 41.55 2.90
403 422 2.963101 AGTGTGCAGTGAGGTACTTGTA 59.037 45.455 0.00 0.00 41.55 2.41
404 423 1.762957 AGTGTGCAGTGAGGTACTTGT 59.237 47.619 0.00 0.00 41.55 3.16
405 424 2.533266 AGTGTGCAGTGAGGTACTTG 57.467 50.000 0.00 0.00 41.55 3.16
406 425 3.206150 CAAAGTGTGCAGTGAGGTACTT 58.794 45.455 0.00 0.00 41.55 2.24
419 438 1.845809 GAGCCTGTCCGCAAAGTGTG 61.846 60.000 0.00 0.00 0.00 3.82
420 439 1.598130 GAGCCTGTCCGCAAAGTGT 60.598 57.895 0.00 0.00 0.00 3.55
421 440 2.328099 GGAGCCTGTCCGCAAAGTG 61.328 63.158 0.00 0.00 34.84 3.16
422 441 2.032681 GGAGCCTGTCCGCAAAGT 59.967 61.111 0.00 0.00 34.84 2.66
430 449 0.884704 TGACGCAAAAGGAGCCTGTC 60.885 55.000 0.00 0.00 0.00 3.51
431 450 0.886490 CTGACGCAAAAGGAGCCTGT 60.886 55.000 0.00 0.00 0.00 4.00
432 451 0.603707 TCTGACGCAAAAGGAGCCTG 60.604 55.000 0.00 0.00 0.00 4.85
433 452 0.108585 TTCTGACGCAAAAGGAGCCT 59.891 50.000 0.00 0.00 0.00 4.58
434 453 0.519077 CTTCTGACGCAAAAGGAGCC 59.481 55.000 0.00 0.00 0.00 4.70
435 454 1.069636 CACTTCTGACGCAAAAGGAGC 60.070 52.381 0.00 0.00 0.00 4.70
436 455 1.069636 GCACTTCTGACGCAAAAGGAG 60.070 52.381 0.00 0.00 0.00 3.69
437 456 0.944386 GCACTTCTGACGCAAAAGGA 59.056 50.000 0.00 0.00 0.00 3.36
438 457 0.662619 TGCACTTCTGACGCAAAAGG 59.337 50.000 0.00 0.00 31.46 3.11
439 458 1.597937 GGTGCACTTCTGACGCAAAAG 60.598 52.381 17.98 0.00 37.41 2.27
440 459 0.380378 GGTGCACTTCTGACGCAAAA 59.620 50.000 17.98 0.00 37.41 2.44
441 460 1.444119 GGGTGCACTTCTGACGCAAA 61.444 55.000 17.98 0.00 37.41 3.68
442 461 1.891919 GGGTGCACTTCTGACGCAA 60.892 57.895 17.98 0.00 37.41 4.85
443 462 2.280797 GGGTGCACTTCTGACGCA 60.281 61.111 17.98 0.00 0.00 5.24
444 463 3.050275 GGGGTGCACTTCTGACGC 61.050 66.667 17.98 3.22 0.00 5.19
445 464 1.961277 GTGGGGTGCACTTCTGACG 60.961 63.158 17.98 0.00 0.00 4.35
446 465 1.961277 CGTGGGGTGCACTTCTGAC 60.961 63.158 17.98 5.95 0.00 3.51
447 466 2.099652 CTCGTGGGGTGCACTTCTGA 62.100 60.000 17.98 7.86 0.00 3.27
448 467 1.669115 CTCGTGGGGTGCACTTCTG 60.669 63.158 17.98 3.62 0.00 3.02
449 468 1.837051 TCTCGTGGGGTGCACTTCT 60.837 57.895 17.98 0.00 0.00 2.85
450 469 1.668151 GTCTCGTGGGGTGCACTTC 60.668 63.158 17.98 9.77 0.00 3.01
451 470 2.426023 GTCTCGTGGGGTGCACTT 59.574 61.111 17.98 0.00 0.00 3.16
452 471 3.626924 GGTCTCGTGGGGTGCACT 61.627 66.667 17.98 0.00 0.00 4.40
455 474 4.736896 GTCGGTCTCGTGGGGTGC 62.737 72.222 0.00 0.00 37.69 5.01
456 475 4.415332 CGTCGGTCTCGTGGGGTG 62.415 72.222 0.00 0.00 37.69 4.61
457 476 4.962836 ACGTCGGTCTCGTGGGGT 62.963 66.667 0.00 0.00 40.07 4.95
468 487 0.248289 AATACCCTTGACCACGTCGG 59.752 55.000 0.00 2.92 42.50 4.79
469 488 1.067425 TGAATACCCTTGACCACGTCG 60.067 52.381 0.00 0.00 34.95 5.12
470 489 2.289195 TGTGAATACCCTTGACCACGTC 60.289 50.000 0.00 0.00 0.00 4.34
471 490 1.695242 TGTGAATACCCTTGACCACGT 59.305 47.619 0.00 0.00 0.00 4.49
472 491 2.465860 TGTGAATACCCTTGACCACG 57.534 50.000 0.00 0.00 0.00 4.94
473 492 3.686016 ACATGTGAATACCCTTGACCAC 58.314 45.455 0.00 0.00 0.00 4.16
474 493 5.428457 AGATACATGTGAATACCCTTGACCA 59.572 40.000 9.11 0.00 0.00 4.02
475 494 5.760253 CAGATACATGTGAATACCCTTGACC 59.240 44.000 9.11 0.00 0.00 4.02
476 495 5.237344 GCAGATACATGTGAATACCCTTGAC 59.763 44.000 9.11 0.00 0.00 3.18
477 496 5.368145 GCAGATACATGTGAATACCCTTGA 58.632 41.667 9.11 0.00 0.00 3.02
478 497 4.516698 GGCAGATACATGTGAATACCCTTG 59.483 45.833 9.11 0.00 0.00 3.61
479 498 4.165950 TGGCAGATACATGTGAATACCCTT 59.834 41.667 9.11 0.00 0.00 3.95
480 499 3.716353 TGGCAGATACATGTGAATACCCT 59.284 43.478 9.11 0.00 0.00 4.34
481 500 4.085357 TGGCAGATACATGTGAATACCC 57.915 45.455 9.11 2.63 0.00 3.69
482 501 5.532406 ACATTGGCAGATACATGTGAATACC 59.468 40.000 9.11 5.38 0.00 2.73
483 502 6.624352 ACATTGGCAGATACATGTGAATAC 57.376 37.500 9.11 0.00 0.00 1.89
484 503 7.938490 ACATACATTGGCAGATACATGTGAATA 59.062 33.333 9.11 0.00 0.00 1.75
485 504 6.774170 ACATACATTGGCAGATACATGTGAAT 59.226 34.615 9.11 0.00 0.00 2.57
486 505 6.121590 ACATACATTGGCAGATACATGTGAA 58.878 36.000 9.11 0.00 0.00 3.18
487 506 5.683681 ACATACATTGGCAGATACATGTGA 58.316 37.500 9.11 0.00 0.00 3.58
488 507 6.482973 TGTACATACATTGGCAGATACATGTG 59.517 38.462 9.11 0.00 0.00 3.21
489 508 6.483307 GTGTACATACATTGGCAGATACATGT 59.517 38.462 2.69 2.69 38.63 3.21
490 509 6.707608 AGTGTACATACATTGGCAGATACATG 59.292 38.462 0.00 0.00 38.63 3.21
491 510 6.830912 AGTGTACATACATTGGCAGATACAT 58.169 36.000 0.00 0.00 38.63 2.29
492 511 6.233905 AGTGTACATACATTGGCAGATACA 57.766 37.500 0.00 0.00 38.63 2.29
493 512 7.254795 GGAAAGTGTACATACATTGGCAGATAC 60.255 40.741 0.00 0.00 38.63 2.24
494 513 6.765989 GGAAAGTGTACATACATTGGCAGATA 59.234 38.462 0.00 0.00 38.63 1.98
495 514 5.590259 GGAAAGTGTACATACATTGGCAGAT 59.410 40.000 0.00 0.00 38.63 2.90
496 515 4.941263 GGAAAGTGTACATACATTGGCAGA 59.059 41.667 0.00 0.00 38.63 4.26
497 516 4.096382 GGGAAAGTGTACATACATTGGCAG 59.904 45.833 0.00 0.00 38.63 4.85
498 517 4.013728 GGGAAAGTGTACATACATTGGCA 58.986 43.478 0.00 0.00 38.63 4.92
499 518 3.380320 GGGGAAAGTGTACATACATTGGC 59.620 47.826 0.00 0.00 38.63 4.52
500 519 3.625764 CGGGGAAAGTGTACATACATTGG 59.374 47.826 0.00 0.00 38.63 3.16
501 520 4.258543 ACGGGGAAAGTGTACATACATTG 58.741 43.478 0.00 0.00 38.63 2.82
502 521 4.563140 ACGGGGAAAGTGTACATACATT 57.437 40.909 0.00 0.00 38.63 2.71
503 522 4.563140 AACGGGGAAAGTGTACATACAT 57.437 40.909 0.00 0.00 38.63 2.29
504 523 4.202336 TGAAACGGGGAAAGTGTACATACA 60.202 41.667 0.00 0.00 0.00 2.29
505 524 4.317488 TGAAACGGGGAAAGTGTACATAC 58.683 43.478 0.00 0.00 0.00 2.39
506 525 4.620589 TGAAACGGGGAAAGTGTACATA 57.379 40.909 0.00 0.00 0.00 2.29
507 526 3.495434 TGAAACGGGGAAAGTGTACAT 57.505 42.857 0.00 0.00 0.00 2.29
508 527 2.944349 GTTGAAACGGGGAAAGTGTACA 59.056 45.455 0.00 0.00 0.00 2.90
509 528 3.614159 GTTGAAACGGGGAAAGTGTAC 57.386 47.619 0.00 0.00 0.00 2.90
522 541 2.719046 CGCACCTCAAATTCGTTGAAAC 59.281 45.455 0.00 0.00 45.67 2.78
523 542 2.614520 TCGCACCTCAAATTCGTTGAAA 59.385 40.909 0.00 0.00 45.67 2.69
524 543 2.214347 TCGCACCTCAAATTCGTTGAA 58.786 42.857 0.00 0.00 45.67 2.69
525 544 1.872388 TCGCACCTCAAATTCGTTGA 58.128 45.000 0.00 0.00 44.20 3.18
526 545 2.159430 TGATCGCACCTCAAATTCGTTG 59.841 45.455 0.00 0.00 38.71 4.10
527 546 2.416547 CTGATCGCACCTCAAATTCGTT 59.583 45.455 0.00 0.00 0.00 3.85
528 547 2.002586 CTGATCGCACCTCAAATTCGT 58.997 47.619 0.00 0.00 0.00 3.85
529 548 1.267732 GCTGATCGCACCTCAAATTCG 60.268 52.381 4.93 0.00 38.92 3.34
530 549 2.012673 AGCTGATCGCACCTCAAATTC 58.987 47.619 11.20 0.00 42.61 2.17
531 550 1.741706 CAGCTGATCGCACCTCAAATT 59.258 47.619 8.42 0.00 42.61 1.82
532 551 1.376543 CAGCTGATCGCACCTCAAAT 58.623 50.000 8.42 0.00 42.61 2.32
533 552 0.674581 CCAGCTGATCGCACCTCAAA 60.675 55.000 17.39 0.00 42.61 2.69
534 553 1.078918 CCAGCTGATCGCACCTCAA 60.079 57.895 17.39 0.00 42.61 3.02
535 554 2.580815 CCAGCTGATCGCACCTCA 59.419 61.111 17.39 0.00 42.61 3.86
536 555 2.894387 GCCAGCTGATCGCACCTC 60.894 66.667 17.39 0.00 42.61 3.85
537 556 3.709633 TGCCAGCTGATCGCACCT 61.710 61.111 17.39 0.00 42.61 4.00
538 557 3.503363 GTGCCAGCTGATCGCACC 61.503 66.667 26.76 14.33 45.64 5.01
540 559 1.153568 GTAGTGCCAGCTGATCGCA 60.154 57.895 17.39 13.99 42.61 5.10
541 560 2.233654 CGTAGTGCCAGCTGATCGC 61.234 63.158 17.39 11.14 39.57 4.58
542 561 0.593518 CTCGTAGTGCCAGCTGATCG 60.594 60.000 17.39 10.09 0.00 3.69
543 562 0.873743 GCTCGTAGTGCCAGCTGATC 60.874 60.000 17.39 7.16 41.67 2.92
544 563 1.142748 GCTCGTAGTGCCAGCTGAT 59.857 57.895 17.39 0.25 41.67 2.90
545 564 2.573869 GCTCGTAGTGCCAGCTGA 59.426 61.111 17.39 0.00 41.67 4.26
553 572 4.142708 TGCAAACCAATTATGCTCGTAGTG 60.143 41.667 0.00 0.00 40.66 2.74
554 573 4.006989 TGCAAACCAATTATGCTCGTAGT 58.993 39.130 0.00 0.00 40.66 2.73
555 574 4.094887 ACTGCAAACCAATTATGCTCGTAG 59.905 41.667 0.00 0.00 40.66 3.51
556 575 4.006989 ACTGCAAACCAATTATGCTCGTA 58.993 39.130 0.00 0.00 40.66 3.43
557 576 2.819608 ACTGCAAACCAATTATGCTCGT 59.180 40.909 0.00 0.00 40.66 4.18
558 577 3.119884 TGACTGCAAACCAATTATGCTCG 60.120 43.478 0.00 0.00 40.66 5.03
559 578 4.439305 TGACTGCAAACCAATTATGCTC 57.561 40.909 0.00 0.00 40.66 4.26
560 579 4.870123 TTGACTGCAAACCAATTATGCT 57.130 36.364 0.00 0.00 40.66 3.79
561 580 7.775397 AATATTGACTGCAAACCAATTATGC 57.225 32.000 11.49 0.00 37.59 3.14
562 581 8.605746 CCAAATATTGACTGCAAACCAATTATG 58.394 33.333 11.49 8.99 37.59 1.90
563 582 7.280652 GCCAAATATTGACTGCAAACCAATTAT 59.719 33.333 11.49 1.98 37.59 1.28
564 583 6.593382 GCCAAATATTGACTGCAAACCAATTA 59.407 34.615 11.49 2.23 37.59 1.40
565 584 5.412286 GCCAAATATTGACTGCAAACCAATT 59.588 36.000 11.49 0.00 37.59 2.32
566 585 4.937015 GCCAAATATTGACTGCAAACCAAT 59.063 37.500 11.13 11.13 37.59 3.16
567 586 4.040217 AGCCAAATATTGACTGCAAACCAA 59.960 37.500 0.00 0.00 37.59 3.67
568 587 3.577848 AGCCAAATATTGACTGCAAACCA 59.422 39.130 0.00 0.00 37.59 3.67
569 588 4.192429 AGCCAAATATTGACTGCAAACC 57.808 40.909 0.00 0.00 37.59 3.27
570 589 4.143052 GCAAGCCAAATATTGACTGCAAAC 60.143 41.667 0.00 0.00 37.59 2.93
571 590 3.995705 GCAAGCCAAATATTGACTGCAAA 59.004 39.130 0.00 0.00 37.59 3.68
572 591 3.587923 GCAAGCCAAATATTGACTGCAA 58.412 40.909 0.00 0.00 38.60 4.08
573 592 2.094078 GGCAAGCCAAATATTGACTGCA 60.094 45.455 6.14 0.00 33.68 4.41
574 593 2.094078 TGGCAAGCCAAATATTGACTGC 60.094 45.455 12.11 0.00 44.12 4.40
575 594 3.872511 TGGCAAGCCAAATATTGACTG 57.127 42.857 12.11 0.00 44.12 3.51
586 605 3.536164 CCAACACTTGGCAAGCCA 58.464 55.556 26.45 10.24 45.17 4.75
601 620 7.960262 TGATATTGCAATATTTGGTAATGCCA 58.040 30.769 28.16 16.45 38.23 4.92
602 621 8.830201 TTGATATTGCAATATTTGGTAATGCC 57.170 30.769 28.16 14.43 38.23 4.40
603 622 9.695526 TCTTGATATTGCAATATTTGGTAATGC 57.304 29.630 28.16 15.03 39.24 3.56
608 627 7.707893 GCAAGTCTTGATATTGCAATATTTGGT 59.292 33.333 28.16 10.84 46.64 3.67
609 628 8.068893 GCAAGTCTTGATATTGCAATATTTGG 57.931 34.615 28.16 20.41 46.64 3.28
618 637 4.708726 AGTTGGCAAGTCTTGATATTGC 57.291 40.909 16.99 12.21 46.67 3.56
619 638 7.198390 CCAATAGTTGGCAAGTCTTGATATTG 58.802 38.462 25.93 20.17 45.17 1.90
620 639 7.338800 CCAATAGTTGGCAAGTCTTGATATT 57.661 36.000 25.93 12.02 45.17 1.28
621 640 6.949352 CCAATAGTTGGCAAGTCTTGATAT 57.051 37.500 25.93 7.21 45.17 1.63
635 654 4.930963 TCACACAAAGTTGCCAATAGTTG 58.069 39.130 0.00 0.00 0.00 3.16
636 655 4.887071 TCTCACACAAAGTTGCCAATAGTT 59.113 37.500 0.00 0.00 0.00 2.24
637 656 4.460263 TCTCACACAAAGTTGCCAATAGT 58.540 39.130 0.00 0.00 0.00 2.12
638 657 5.633830 ATCTCACACAAAGTTGCCAATAG 57.366 39.130 0.00 0.00 0.00 1.73
639 658 5.647658 CCTATCTCACACAAAGTTGCCAATA 59.352 40.000 0.00 0.00 0.00 1.90
640 659 4.460382 CCTATCTCACACAAAGTTGCCAAT 59.540 41.667 0.00 0.00 0.00 3.16
641 660 3.820467 CCTATCTCACACAAAGTTGCCAA 59.180 43.478 0.00 0.00 0.00 4.52
642 661 3.411446 CCTATCTCACACAAAGTTGCCA 58.589 45.455 0.00 0.00 0.00 4.92
643 662 2.162408 GCCTATCTCACACAAAGTTGCC 59.838 50.000 0.00 0.00 0.00 4.52
644 663 2.813754 TGCCTATCTCACACAAAGTTGC 59.186 45.455 0.00 0.00 0.00 4.17
645 664 4.756642 TCTTGCCTATCTCACACAAAGTTG 59.243 41.667 0.00 0.00 0.00 3.16
646 665 4.973168 TCTTGCCTATCTCACACAAAGTT 58.027 39.130 0.00 0.00 0.00 2.66
647 666 4.623932 TCTTGCCTATCTCACACAAAGT 57.376 40.909 0.00 0.00 0.00 2.66
648 667 4.154918 GGTTCTTGCCTATCTCACACAAAG 59.845 45.833 0.00 0.00 0.00 2.77
649 668 4.072131 GGTTCTTGCCTATCTCACACAAA 58.928 43.478 0.00 0.00 0.00 2.83
650 669 3.072330 TGGTTCTTGCCTATCTCACACAA 59.928 43.478 0.00 0.00 0.00 3.33
651 670 2.637382 TGGTTCTTGCCTATCTCACACA 59.363 45.455 0.00 0.00 0.00 3.72
652 671 3.334583 TGGTTCTTGCCTATCTCACAC 57.665 47.619 0.00 0.00 0.00 3.82
653 672 3.559171 GGTTGGTTCTTGCCTATCTCACA 60.559 47.826 0.00 0.00 0.00 3.58
654 673 3.010420 GGTTGGTTCTTGCCTATCTCAC 58.990 50.000 0.00 0.00 0.00 3.51
655 674 2.642311 TGGTTGGTTCTTGCCTATCTCA 59.358 45.455 0.00 0.00 0.00 3.27
656 675 3.350219 TGGTTGGTTCTTGCCTATCTC 57.650 47.619 0.00 0.00 0.00 2.75
657 676 3.074538 ACTTGGTTGGTTCTTGCCTATCT 59.925 43.478 0.00 0.00 0.00 1.98
658 677 3.421844 ACTTGGTTGGTTCTTGCCTATC 58.578 45.455 0.00 0.00 0.00 2.08
659 678 3.525800 ACTTGGTTGGTTCTTGCCTAT 57.474 42.857 0.00 0.00 0.00 2.57
660 679 3.393278 ACTACTTGGTTGGTTCTTGCCTA 59.607 43.478 0.00 0.00 0.00 3.93
661 680 2.174854 ACTACTTGGTTGGTTCTTGCCT 59.825 45.455 0.00 0.00 0.00 4.75
662 681 2.583143 ACTACTTGGTTGGTTCTTGCC 58.417 47.619 0.00 0.00 0.00 4.52
663 682 3.188667 GCTACTACTTGGTTGGTTCTTGC 59.811 47.826 0.00 0.00 0.00 4.01
664 683 3.751698 GGCTACTACTTGGTTGGTTCTTG 59.248 47.826 0.00 0.00 0.00 3.02
665 684 3.393278 TGGCTACTACTTGGTTGGTTCTT 59.607 43.478 0.00 0.00 0.00 2.52
666 685 2.976882 TGGCTACTACTTGGTTGGTTCT 59.023 45.455 0.00 0.00 0.00 3.01
667 686 3.412237 TGGCTACTACTTGGTTGGTTC 57.588 47.619 0.00 0.00 0.00 3.62
668 687 3.868619 TTGGCTACTACTTGGTTGGTT 57.131 42.857 0.00 0.00 0.00 3.67
669 688 5.710409 ATATTGGCTACTACTTGGTTGGT 57.290 39.130 0.00 0.00 0.00 3.67
670 689 6.183360 CCAAATATTGGCTACTACTTGGTTGG 60.183 42.308 0.34 0.00 45.17 3.77
671 690 6.795399 CCAAATATTGGCTACTACTTGGTTG 58.205 40.000 0.34 0.00 45.17 3.77
708 727 6.812656 TGCTACTAAAAATTGACATGCCAATG 59.187 34.615 8.09 0.00 36.90 2.82
709 728 6.934056 TGCTACTAAAAATTGACATGCCAAT 58.066 32.000 0.80 0.80 38.30 3.16
710 729 6.338214 TGCTACTAAAAATTGACATGCCAA 57.662 33.333 0.00 0.00 0.00 4.52
711 730 5.973899 TGCTACTAAAAATTGACATGCCA 57.026 34.783 0.00 0.00 0.00 4.92
712 731 6.090763 GGTTTGCTACTAAAAATTGACATGCC 59.909 38.462 0.00 0.00 0.00 4.40
713 732 6.644592 TGGTTTGCTACTAAAAATTGACATGC 59.355 34.615 0.00 0.00 0.00 4.06
714 733 8.586570 TTGGTTTGCTACTAAAAATTGACATG 57.413 30.769 0.00 0.00 0.00 3.21
715 734 9.777297 AATTGGTTTGCTACTAAAAATTGACAT 57.223 25.926 0.00 0.00 30.48 3.06
719 738 9.971744 GCATAATTGGTTTGCTACTAAAAATTG 57.028 29.630 0.00 0.00 30.48 2.32
720 739 9.942850 AGCATAATTGGTTTGCTACTAAAAATT 57.057 25.926 5.54 0.00 44.51 1.82
721 740 9.369904 CAGCATAATTGGTTTGCTACTAAAAAT 57.630 29.630 6.67 0.00 44.54 1.82
722 741 8.364142 ACAGCATAATTGGTTTGCTACTAAAAA 58.636 29.630 6.67 0.00 44.54 1.94
723 742 7.812191 CACAGCATAATTGGTTTGCTACTAAAA 59.188 33.333 6.67 0.00 44.54 1.52
724 743 7.312154 CACAGCATAATTGGTTTGCTACTAAA 58.688 34.615 6.67 0.00 44.54 1.85
725 744 6.851609 CACAGCATAATTGGTTTGCTACTAA 58.148 36.000 6.67 0.00 44.54 2.24
726 745 6.435430 CACAGCATAATTGGTTTGCTACTA 57.565 37.500 6.67 0.00 44.54 1.82
727 746 5.314923 CACAGCATAATTGGTTTGCTACT 57.685 39.130 6.67 0.00 44.54 2.57
732 751 2.662637 CACGCACAGCATAATTGGTTTG 59.337 45.455 0.00 0.00 34.83 2.93
733 752 2.926159 GCACGCACAGCATAATTGGTTT 60.926 45.455 0.00 0.00 0.00 3.27
734 753 1.402720 GCACGCACAGCATAATTGGTT 60.403 47.619 0.00 0.00 0.00 3.67
735 754 0.171007 GCACGCACAGCATAATTGGT 59.829 50.000 0.00 0.00 0.00 3.67
736 755 0.170784 TGCACGCACAGCATAATTGG 59.829 50.000 0.00 0.00 37.02 3.16
737 756 1.541475 CTGCACGCACAGCATAATTG 58.459 50.000 0.00 0.00 41.82 2.32
738 757 0.452987 CCTGCACGCACAGCATAATT 59.547 50.000 0.00 0.00 41.82 1.40
739 758 0.392863 TCCTGCACGCACAGCATAAT 60.393 50.000 0.00 0.00 41.82 1.28
740 759 0.605050 TTCCTGCACGCACAGCATAA 60.605 50.000 0.00 0.00 41.82 1.90
741 760 1.003959 TTCCTGCACGCACAGCATA 60.004 52.632 0.00 0.00 41.82 3.14
742 761 2.281692 TTCCTGCACGCACAGCAT 60.282 55.556 0.00 0.00 41.82 3.79
743 762 2.974148 CTTCCTGCACGCACAGCA 60.974 61.111 0.00 0.00 40.19 4.41
744 763 3.730761 CCTTCCTGCACGCACAGC 61.731 66.667 0.00 0.00 36.29 4.40
745 764 3.730761 GCCTTCCTGCACGCACAG 61.731 66.667 0.00 0.00 37.42 3.66
751 770 4.400961 AGAGCGGCCTTCCTGCAC 62.401 66.667 0.00 0.00 35.38 4.57
752 771 4.087892 GAGAGCGGCCTTCCTGCA 62.088 66.667 0.00 0.00 35.38 4.41
753 772 4.087892 TGAGAGCGGCCTTCCTGC 62.088 66.667 0.00 0.00 33.90 4.85
754 773 2.125350 GTGAGAGCGGCCTTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
755 774 3.394836 GGTGAGAGCGGCCTTCCT 61.395 66.667 0.00 0.00 0.00 3.36
756 775 3.672295 CTGGTGAGAGCGGCCTTCC 62.672 68.421 0.00 2.22 0.00 3.46
757 776 2.125350 CTGGTGAGAGCGGCCTTC 60.125 66.667 0.00 0.00 0.00 3.46
758 777 2.604686 TCTGGTGAGAGCGGCCTT 60.605 61.111 0.00 0.00 0.00 4.35
759 778 3.073735 CTCTGGTGAGAGCGGCCT 61.074 66.667 0.00 0.00 42.73 5.19
766 785 1.140312 AAAGCCCAACTCTGGTGAGA 58.860 50.000 0.00 0.00 42.73 3.27
767 786 1.986882 AAAAGCCCAACTCTGGTGAG 58.013 50.000 0.00 0.00 41.72 3.51
768 787 3.586470 TTAAAAGCCCAACTCTGGTGA 57.414 42.857 0.00 0.00 41.72 4.02
769 788 4.871933 AATTAAAAGCCCAACTCTGGTG 57.128 40.909 0.00 0.00 41.72 4.17
770 789 5.887214 AAAATTAAAAGCCCAACTCTGGT 57.113 34.783 0.00 0.00 41.72 4.00
771 790 6.287525 TCAAAAATTAAAAGCCCAACTCTGG 58.712 36.000 0.00 0.00 43.10 3.86
775 794 4.749598 CGCTCAAAAATTAAAAGCCCAACT 59.250 37.500 0.00 0.00 0.00 3.16
1053 1082 3.567579 CTTCCCCTTCCGCTGCCAA 62.568 63.158 0.00 0.00 0.00 4.52
1244 1273 9.086758 ACTAGAAAACTACAACTAGCTCCTAAA 57.913 33.333 0.00 0.00 36.71 1.85
1280 1392 0.608856 ACAAGCCGCATCAATCCACA 60.609 50.000 0.00 0.00 0.00 4.17
1290 1402 2.790791 CCCCAAACAACAAGCCGCA 61.791 57.895 0.00 0.00 0.00 5.69
1322 1434 2.124403 GGCCATGTCTCCTGCAGG 60.124 66.667 27.87 27.87 0.00 4.85
1404 1517 0.872388 GGTCCAAACAACCGTAGCTG 59.128 55.000 0.00 0.00 0.00 4.24
1405 1518 0.763035 AGGTCCAAACAACCGTAGCT 59.237 50.000 0.00 0.00 41.89 3.32
1407 1520 1.877443 CCAAGGTCCAAACAACCGTAG 59.123 52.381 0.00 0.00 41.89 3.51
1410 1523 1.460273 CCCCAAGGTCCAAACAACCG 61.460 60.000 0.00 0.00 41.89 4.44
1412 1525 0.750249 CACCCCAAGGTCCAAACAAC 59.250 55.000 0.00 0.00 46.45 3.32
1423 1536 6.040391 TCACTAAAAATCAAGAACACCCCAAG 59.960 38.462 0.00 0.00 0.00 3.61
1427 1540 6.206498 GTGTCACTAAAAATCAAGAACACCC 58.794 40.000 0.00 0.00 32.16 4.61
1428 1541 5.907391 CGTGTCACTAAAAATCAAGAACACC 59.093 40.000 0.65 0.00 33.44 4.16
1437 1550 6.073222 ACCACAGAATCGTGTCACTAAAAATC 60.073 38.462 0.65 0.00 34.98 2.17
1440 1553 4.699637 ACCACAGAATCGTGTCACTAAAA 58.300 39.130 0.65 0.00 34.98 1.52
1448 1564 5.407407 AGAGAAATACCACAGAATCGTGT 57.593 39.130 4.99 0.00 34.98 4.49
1451 1567 5.178797 ACCAAGAGAAATACCACAGAATCG 58.821 41.667 0.00 0.00 0.00 3.34
1490 1606 1.065418 GTGGAAACCGTCATGGATCCT 60.065 52.381 14.23 0.00 43.42 3.24
1708 1825 5.883673 GTGGCAAAAGACACAATATACCCTA 59.116 40.000 0.00 0.00 37.54 3.53
1709 1826 4.705023 GTGGCAAAAGACACAATATACCCT 59.295 41.667 0.00 0.00 37.54 4.34
1712 1829 5.183140 ACAGGTGGCAAAAGACACAATATAC 59.817 40.000 3.65 0.00 39.31 1.47
1713 1830 5.182950 CACAGGTGGCAAAAGACACAATATA 59.817 40.000 3.65 0.00 39.31 0.86
2083 2201 6.324770 ACTGGATCACAAAAAGAATCCTTGTT 59.675 34.615 0.00 0.00 30.99 2.83
2085 2203 6.154445 CACTGGATCACAAAAAGAATCCTTG 58.846 40.000 0.00 0.00 31.91 3.61
2086 2204 5.835280 ACACTGGATCACAAAAAGAATCCTT 59.165 36.000 0.00 0.00 0.00 3.36
2235 2354 6.126409 AGTTTACTGAAACCTCAAACCATCA 58.874 36.000 0.00 0.00 45.21 3.07
2560 2680 7.789202 TTTCCCTTTCATGATGGAAAATACA 57.211 32.000 22.49 8.39 42.31 2.29
2747 2867 8.329502 AGGAGTTCCTGCTTAGTTTAATAACAT 58.670 33.333 0.00 0.00 46.55 2.71
2922 3054 5.443185 TTTGCTTGACATTCTTTCTGGAG 57.557 39.130 0.00 0.00 0.00 3.86
3185 3317 7.323420 AGAGTTTCCCAATTTAAATAGCTTGC 58.677 34.615 0.01 0.00 0.00 4.01
3210 3342 1.628238 ATCCGCCGGGTGATGGTAAA 61.628 55.000 9.67 0.00 33.83 2.01
3385 3517 4.730613 GCTCTTGTTGCAGAAAAACTTCGA 60.731 41.667 0.00 0.00 0.00 3.71
3482 3615 4.613944 CAACACATGTCTTGTTGCAGAAT 58.386 39.130 12.95 0.00 45.36 2.40
3507 3640 6.750501 CACAGATCTTGTTGCAGGATTATTTG 59.249 38.462 0.00 0.00 38.16 2.32
3515 3648 3.278367 CAACACAGATCTTGTTGCAGG 57.722 47.619 24.63 11.47 45.36 4.85
3565 3698 1.352056 GAGCCGTTAGATTTGCCGC 59.648 57.895 0.00 0.00 0.00 6.53
3585 3718 4.547905 ATGCTACGCGTCGGGTCG 62.548 66.667 18.63 13.70 0.00 4.79
3602 3735 5.792741 CTTCACTCAAATTTAAATGGGGCA 58.207 37.500 0.39 0.00 0.00 5.36
4089 4237 9.545611 GTTTAAAAGAACAGACACGAACTAAAA 57.454 29.630 0.00 0.00 0.00 1.52
4242 4460 5.762711 TGACTCGATTTTCACATTTTCCTCA 59.237 36.000 0.00 0.00 0.00 3.86
4292 4510 0.593128 TCTGCGCTTCTTTTTGGAGC 59.407 50.000 9.73 0.00 0.00 4.70
4310 4533 1.859080 GCGGTTACTTGGATGACGATC 59.141 52.381 0.00 0.00 0.00 3.69
4381 4604 3.525800 AAACCTACTTCAATGGCAGGT 57.474 42.857 0.00 0.00 41.38 4.00
4391 4614 5.215903 GCTTGAAGCTTGAAAACCTACTTC 58.784 41.667 10.44 0.00 38.45 3.01
4443 4666 6.147821 CAGACTACAATGTTCACCACTTAAGG 59.852 42.308 7.53 0.00 0.00 2.69
4478 4701 2.688446 CTGGAGTAATCAGACGGCAGTA 59.312 50.000 0.00 0.00 34.36 2.74
4516 4739 0.176680 AGAAGCCGTGGACTATGCAG 59.823 55.000 0.00 0.00 0.00 4.41
4523 4746 4.933400 TCTTGTAAATTAGAAGCCGTGGAC 59.067 41.667 5.16 0.00 0.00 4.02
4629 6100 3.009143 GTGTCCTTGGAGATACCCTTGTT 59.991 47.826 0.00 0.00 38.00 2.83
4651 6122 1.226974 CCACGAGCATACGAGGTGG 60.227 63.158 5.12 0.00 41.81 4.61
4750 6286 7.392113 TCCGTAAACAAATGTCTGGATGTTTAT 59.608 33.333 11.64 0.00 44.96 1.40
4760 6296 7.090953 TCAAAACTTCCGTAAACAAATGTCT 57.909 32.000 0.00 0.00 0.00 3.41
4790 6327 7.595311 TGATACTATTATAAACATGCTGCCG 57.405 36.000 0.00 0.00 0.00 5.69
4808 6345 8.674607 GGAATTTTAAAGACGGACATTGATACT 58.325 33.333 0.00 0.00 0.00 2.12
4809 6346 8.674607 AGGAATTTTAAAGACGGACATTGATAC 58.325 33.333 0.00 0.00 0.00 2.24
4810 6347 8.801882 AGGAATTTTAAAGACGGACATTGATA 57.198 30.769 0.00 0.00 0.00 2.15
4811 6348 7.703058 AGGAATTTTAAAGACGGACATTGAT 57.297 32.000 0.00 0.00 0.00 2.57
4812 6349 8.624367 TTAGGAATTTTAAAGACGGACATTGA 57.376 30.769 0.00 0.00 0.00 2.57
4813 6350 9.685828 TTTTAGGAATTTTAAAGACGGACATTG 57.314 29.630 0.00 0.00 0.00 2.82
4945 6491 5.365605 TGTATATCACGAAAACCCATCCTCT 59.634 40.000 0.00 0.00 0.00 3.69
5122 6674 0.180406 GTCCACTCCCGCCATAATGT 59.820 55.000 0.00 0.00 0.00 2.71
5176 6729 8.044574 TCTCCATATGTCAATATTTTCTCCCA 57.955 34.615 1.24 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.