Multiple sequence alignment - TraesCS3D01G248600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G248600 chr3D 100.000 5496 0 0 1 5496 347571995 347577490 0.000000e+00 10150.0
1 TraesCS3D01G248600 chr3D 93.220 354 21 3 223 574 480059403 480059051 8.160000e-143 518.0
2 TraesCS3D01G248600 chr3D 94.760 229 9 3 1 226 374251353 374251581 2.440000e-93 353.0
3 TraesCS3D01G248600 chr3D 94.248 226 12 1 1 226 156196893 156196669 1.470000e-90 344.0
4 TraesCS3D01G248600 chr3D 100.000 32 0 0 4647 4678 196923139 196923170 5.950000e-05 60.2
5 TraesCS3D01G248600 chr3D 97.222 36 0 1 4646 4680 610348977 610348942 5.950000e-05 60.2
6 TraesCS3D01G248600 chr3A 95.771 3736 133 11 1086 4806 466774330 466778055 0.000000e+00 6000.0
7 TraesCS3D01G248600 chr3A 92.557 309 14 8 4853 5155 466781037 466781342 8.450000e-118 435.0
8 TraesCS3D01G248600 chr3A 94.604 278 8 4 782 1054 466773724 466773999 1.830000e-114 424.0
9 TraesCS3D01G248600 chr3A 89.426 331 18 10 5168 5496 466781554 466781869 8.580000e-108 401.0
10 TraesCS3D01G248600 chr3A 95.699 186 7 1 1991 2175 713938206 713938021 1.160000e-76 298.0
11 TraesCS3D01G248600 chr3A 95.161 186 8 1 1991 2175 22509263 22509078 5.380000e-75 292.0
12 TraesCS3D01G248600 chr3A 97.297 37 1 0 4647 4683 461804061 461804097 4.600000e-06 63.9
13 TraesCS3D01G248600 chr3B 94.822 3785 136 20 1098 4853 447286295 447290048 0.000000e+00 5849.0
14 TraesCS3D01G248600 chr3B 91.554 663 30 13 4850 5496 447290368 447291020 0.000000e+00 891.0
15 TraesCS3D01G248600 chr3B 89.270 466 29 14 593 1049 447285571 447286024 1.030000e-156 564.0
16 TraesCS3D01G248600 chr7D 92.997 357 20 4 223 574 75958345 75958701 2.940000e-142 516.0
17 TraesCS3D01G248600 chr7D 92.717 357 20 5 223 574 18831687 18832042 1.370000e-140 510.0
18 TraesCS3D01G248600 chr6D 92.958 355 22 3 223 574 352834534 352834888 1.060000e-141 514.0
19 TraesCS3D01G248600 chr6D 94.298 228 11 2 1 226 141274792 141275019 1.130000e-91 348.0
20 TraesCS3D01G248600 chr6D 94.170 223 13 0 4 226 17972967 17972745 1.900000e-89 340.0
21 TraesCS3D01G248600 chr6D 97.143 35 1 0 4647 4681 419274664 419274698 5.950000e-05 60.2
22 TraesCS3D01G248600 chr6D 100.000 31 0 0 4647 4677 1795769 1795799 2.140000e-04 58.4
23 TraesCS3D01G248600 chr6D 96.970 33 1 0 4647 4679 410398641 410398673 7.690000e-04 56.5
24 TraesCS3D01G248600 chr1D 92.938 354 22 3 223 573 19869460 19869813 3.800000e-141 512.0
25 TraesCS3D01G248600 chr1D 93.860 228 12 2 1 226 282641309 282641536 5.270000e-90 342.0
26 TraesCS3D01G248600 chr1D 95.122 41 1 1 4645 4684 484117702 484117662 4.600000e-06 63.9
27 TraesCS3D01G248600 chr1D 100.000 32 0 0 4646 4677 453278696 453278727 5.950000e-05 60.2
28 TraesCS3D01G248600 chr1D 100.000 30 0 0 4647 4676 408629278 408629249 7.690000e-04 56.5
29 TraesCS3D01G248600 chr1D 94.444 36 1 1 4641 4676 110937719 110937753 3.000000e-03 54.7
30 TraesCS3D01G248600 chr5D 92.697 356 22 4 223 574 76211224 76211579 1.370000e-140 510.0
31 TraesCS3D01G248600 chr5D 92.717 357 21 4 223 574 272356063 272356419 1.370000e-140 510.0
32 TraesCS3D01G248600 chr5D 100.000 35 0 0 4647 4681 234153217 234153251 1.280000e-06 65.8
33 TraesCS3D01G248600 chr5D 100.000 33 0 0 4645 4677 138468945 138468977 1.650000e-05 62.1
34 TraesCS3D01G248600 chr4D 92.676 355 23 3 223 574 385586719 385587073 4.910000e-140 508.0
35 TraesCS3D01G248600 chr4D 92.697 356 21 5 223 574 468586277 468586631 4.910000e-140 508.0
36 TraesCS3D01G248600 chr4D 94.667 225 10 2 4 226 326478586 326478362 1.130000e-91 348.0
37 TraesCS3D01G248600 chr4D 94.248 226 13 0 1 226 77117898 77118123 4.080000e-91 346.0
38 TraesCS3D01G248600 chr4A 93.778 225 12 2 4 226 85588508 85588284 2.450000e-88 337.0
39 TraesCS3D01G248600 chr4A 95.161 186 8 1 1991 2175 518038550 518038735 5.380000e-75 292.0
40 TraesCS3D01G248600 chrUn 87.544 281 23 9 4 279 111393544 111393271 1.150000e-81 315.0
41 TraesCS3D01G248600 chrUn 97.059 34 1 0 4647 4680 48473151 48473118 2.140000e-04 58.4
42 TraesCS3D01G248600 chrUn 100.000 28 0 0 4653 4680 235115246 235115219 1.000000e-02 52.8
43 TraesCS3D01G248600 chrUn 100.000 28 0 0 4653 4680 237209156 237209183 1.000000e-02 52.8
44 TraesCS3D01G248600 chrUn 100.000 28 0 0 4650 4677 321511932 321511959 1.000000e-02 52.8
45 TraesCS3D01G248600 chrUn 100.000 28 0 0 4653 4680 346822292 346822319 1.000000e-02 52.8
46 TraesCS3D01G248600 chrUn 100.000 28 0 0 4653 4680 433966358 433966385 1.000000e-02 52.8
47 TraesCS3D01G248600 chr6A 96.335 191 6 1 1991 2180 581579572 581579762 4.130000e-81 313.0
48 TraesCS3D01G248600 chr1A 95.699 186 7 1 1991 2175 49510357 49510172 1.160000e-76 298.0
49 TraesCS3D01G248600 chr1A 94.624 186 9 1 1991 2175 471498151 471497966 2.510000e-73 287.0
50 TraesCS3D01G248600 chr1A 94.624 186 9 1 1991 2175 555992852 555993037 2.510000e-73 287.0
51 TraesCS3D01G248600 chr1A 94.086 186 10 1 1991 2175 530874779 530874594 1.170000e-71 281.0
52 TraesCS3D01G248600 chr5A 95.161 186 8 1 1991 2175 657069015 657068830 5.380000e-75 292.0
53 TraesCS3D01G248600 chr5A 100.000 33 0 0 4645 4677 184233274 184233242 1.650000e-05 62.1
54 TraesCS3D01G248600 chr5A 100.000 33 0 0 4647 4679 593329697 593329729 1.650000e-05 62.1
55 TraesCS3D01G248600 chr2A 100.000 34 0 0 4647 4680 627512534 627512501 4.600000e-06 63.9
56 TraesCS3D01G248600 chr6B 95.000 40 1 1 4644 4683 43502534 43502572 1.650000e-05 62.1
57 TraesCS3D01G248600 chr5B 100.000 33 0 0 4645 4677 155713895 155713927 1.650000e-05 62.1
58 TraesCS3D01G248600 chr5B 100.000 33 0 0 4647 4679 580835482 580835514 1.650000e-05 62.1
59 TraesCS3D01G248600 chr2D 94.737 38 2 0 4648 4685 24978623 24978586 5.950000e-05 60.2
60 TraesCS3D01G248600 chr7A 100.000 29 0 0 4648 4676 677521134 677521162 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G248600 chr3D 347571995 347577490 5495 False 10150.000000 10150 100.0000 1 5496 1 chr3D.!!$F2 5495
1 TraesCS3D01G248600 chr3A 466773724 466781869 8145 False 1815.000000 6000 93.0895 782 5496 4 chr3A.!!$F2 4714
2 TraesCS3D01G248600 chr3B 447285571 447291020 5449 False 2434.666667 5849 91.8820 593 5496 3 chr3B.!!$F1 4903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1009 0.034756 AAAAATCCCCAACCAAGCGC 59.965 50.000 0.00 0.0 0.00 5.92 F
2106 2438 0.687757 CCCTCGAGGATCCAGACCAA 60.688 60.000 33.39 0.0 38.24 3.67 F
2330 2662 1.596934 CGGCCTTGCTTCCTACAGA 59.403 57.895 0.00 0.0 0.00 3.41 F
4070 4409 1.421646 AGCCCAAGATATACAGCACCC 59.578 52.381 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 2842 1.068281 CCATGCTGCGTGATCTACTCT 59.932 52.381 22.79 0.0 0.0 3.24 R
3444 3780 0.813821 TGACAGATCAGCACCTCTCG 59.186 55.000 0.00 0.0 0.0 4.04 R
4164 4506 0.110486 TTGGGGAACAGAGTCTTGCC 59.890 55.000 0.00 0.0 0.0 4.52 R
5353 8857 0.693049 AGCTTTTGAGGTCGTGGGAT 59.307 50.000 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.560253 ATGGAAAATCCGATTAAAGATCCG 57.440 37.500 0.00 0.00 40.17 4.18
60 61 5.433526 TGGAAAATCCGATTAAAGATCCGT 58.566 37.500 0.00 0.00 40.17 4.69
61 62 5.883673 TGGAAAATCCGATTAAAGATCCGTT 59.116 36.000 0.00 0.00 40.17 4.44
62 63 6.376018 TGGAAAATCCGATTAAAGATCCGTTT 59.624 34.615 0.00 0.00 40.17 3.60
63 64 7.094118 TGGAAAATCCGATTAAAGATCCGTTTT 60.094 33.333 0.00 0.00 40.17 2.43
64 65 7.431376 GGAAAATCCGATTAAAGATCCGTTTTC 59.569 37.037 0.00 0.00 33.46 2.29
65 66 6.995511 AATCCGATTAAAGATCCGTTTTCA 57.004 33.333 0.00 0.00 0.00 2.69
66 67 5.789710 TCCGATTAAAGATCCGTTTTCAC 57.210 39.130 0.00 0.00 0.00 3.18
67 68 4.632688 TCCGATTAAAGATCCGTTTTCACC 59.367 41.667 0.00 0.00 0.00 4.02
68 69 4.393680 CCGATTAAAGATCCGTTTTCACCA 59.606 41.667 0.00 0.00 0.00 4.17
69 70 5.065988 CCGATTAAAGATCCGTTTTCACCAT 59.934 40.000 0.00 0.00 0.00 3.55
70 71 6.404293 CCGATTAAAGATCCGTTTTCACCATT 60.404 38.462 0.00 0.00 0.00 3.16
71 72 7.201661 CCGATTAAAGATCCGTTTTCACCATTA 60.202 37.037 0.00 0.00 0.00 1.90
72 73 8.178964 CGATTAAAGATCCGTTTTCACCATTAA 58.821 33.333 0.00 0.00 0.00 1.40
73 74 9.849166 GATTAAAGATCCGTTTTCACCATTAAA 57.151 29.630 0.00 0.00 0.00 1.52
75 76 9.849166 TTAAAGATCCGTTTTCACCATTAAATC 57.151 29.630 0.00 0.00 0.00 2.17
76 77 6.451064 AGATCCGTTTTCACCATTAAATCC 57.549 37.500 0.00 0.00 0.00 3.01
77 78 5.359860 AGATCCGTTTTCACCATTAAATCCC 59.640 40.000 0.00 0.00 0.00 3.85
78 79 4.668636 TCCGTTTTCACCATTAAATCCCT 58.331 39.130 0.00 0.00 0.00 4.20
79 80 4.703093 TCCGTTTTCACCATTAAATCCCTC 59.297 41.667 0.00 0.00 0.00 4.30
80 81 4.438200 CCGTTTTCACCATTAAATCCCTCG 60.438 45.833 0.00 0.00 0.00 4.63
81 82 4.421058 GTTTTCACCATTAAATCCCTCGC 58.579 43.478 0.00 0.00 0.00 5.03
82 83 1.948104 TCACCATTAAATCCCTCGCG 58.052 50.000 0.00 0.00 0.00 5.87
83 84 1.483004 TCACCATTAAATCCCTCGCGA 59.517 47.619 9.26 9.26 0.00 5.87
84 85 2.104111 TCACCATTAAATCCCTCGCGAT 59.896 45.455 10.36 0.00 0.00 4.58
85 86 2.224079 CACCATTAAATCCCTCGCGATG 59.776 50.000 10.36 6.89 0.00 3.84
86 87 2.104111 ACCATTAAATCCCTCGCGATGA 59.896 45.455 10.36 10.40 0.00 2.92
87 88 2.738846 CCATTAAATCCCTCGCGATGAG 59.261 50.000 10.36 0.80 44.83 2.90
97 98 2.844122 TCGCGATGAGATCTTCGAAA 57.156 45.000 18.67 4.66 43.48 3.46
98 99 3.145212 TCGCGATGAGATCTTCGAAAA 57.855 42.857 18.67 2.49 43.48 2.29
99 100 3.706698 TCGCGATGAGATCTTCGAAAAT 58.293 40.909 18.67 0.00 43.48 1.82
100 101 4.855531 TCGCGATGAGATCTTCGAAAATA 58.144 39.130 18.67 0.00 43.48 1.40
101 102 4.912187 TCGCGATGAGATCTTCGAAAATAG 59.088 41.667 18.67 4.51 43.48 1.73
102 103 4.912187 CGCGATGAGATCTTCGAAAATAGA 59.088 41.667 18.67 0.00 43.48 1.98
103 104 5.570973 CGCGATGAGATCTTCGAAAATAGAT 59.429 40.000 18.67 0.00 43.48 1.98
104 105 6.237175 CGCGATGAGATCTTCGAAAATAGATC 60.237 42.308 18.67 14.39 44.54 2.75
156 157 9.968870 TTTTTATTAAAAGTTGTCGTGCCTATT 57.031 25.926 2.12 0.00 0.00 1.73
157 158 8.958175 TTTATTAAAAGTTGTCGTGCCTATTG 57.042 30.769 0.00 0.00 0.00 1.90
158 159 2.989422 AAAGTTGTCGTGCCTATTGC 57.011 45.000 0.00 0.00 41.77 3.56
170 171 2.476821 GCCTATTGCACATGAATTGCC 58.523 47.619 0.00 0.00 39.39 4.52
171 172 2.159071 GCCTATTGCACATGAATTGCCA 60.159 45.455 0.00 0.00 39.39 4.92
172 173 3.493699 GCCTATTGCACATGAATTGCCAT 60.494 43.478 0.00 0.00 39.39 4.40
173 174 4.055360 CCTATTGCACATGAATTGCCATG 58.945 43.478 0.00 5.76 46.90 3.66
174 175 3.897141 ATTGCACATGAATTGCCATGA 57.103 38.095 12.68 0.00 44.98 3.07
175 176 3.897141 TTGCACATGAATTGCCATGAT 57.103 38.095 12.68 0.00 44.98 2.45
176 177 3.172229 TGCACATGAATTGCCATGATG 57.828 42.857 12.68 8.75 44.98 3.07
177 178 2.498078 TGCACATGAATTGCCATGATGT 59.502 40.909 12.68 0.00 44.98 3.06
178 179 3.055747 TGCACATGAATTGCCATGATGTT 60.056 39.130 12.68 0.00 44.98 2.71
179 180 3.936453 GCACATGAATTGCCATGATGTTT 59.064 39.130 12.68 0.00 44.98 2.83
180 181 5.110598 GCACATGAATTGCCATGATGTTTA 58.889 37.500 12.68 0.00 44.98 2.01
181 182 5.005971 GCACATGAATTGCCATGATGTTTAC 59.994 40.000 12.68 0.00 44.98 2.01
182 183 6.100668 CACATGAATTGCCATGATGTTTACA 58.899 36.000 12.68 0.00 44.98 2.41
183 184 6.035220 CACATGAATTGCCATGATGTTTACAC 59.965 38.462 12.68 0.00 44.98 2.90
184 185 5.981088 TGAATTGCCATGATGTTTACACT 57.019 34.783 0.00 0.00 0.00 3.55
185 186 5.712004 TGAATTGCCATGATGTTTACACTG 58.288 37.500 0.00 0.00 0.00 3.66
186 187 5.476254 TGAATTGCCATGATGTTTACACTGA 59.524 36.000 0.00 0.00 0.00 3.41
187 188 5.981088 ATTGCCATGATGTTTACACTGAA 57.019 34.783 0.00 0.00 0.00 3.02
188 189 5.375417 TTGCCATGATGTTTACACTGAAG 57.625 39.130 0.00 0.00 0.00 3.02
189 190 4.397420 TGCCATGATGTTTACACTGAAGT 58.603 39.130 0.00 0.00 0.00 3.01
190 191 4.826733 TGCCATGATGTTTACACTGAAGTT 59.173 37.500 0.00 0.00 0.00 2.66
191 192 6.000840 TGCCATGATGTTTACACTGAAGTTA 58.999 36.000 0.00 0.00 0.00 2.24
192 193 6.072728 TGCCATGATGTTTACACTGAAGTTAC 60.073 38.462 0.00 0.00 0.00 2.50
193 194 6.622896 GCCATGATGTTTACACTGAAGTTACC 60.623 42.308 0.00 0.00 0.00 2.85
194 195 6.429692 CCATGATGTTTACACTGAAGTTACCA 59.570 38.462 0.00 0.00 0.00 3.25
195 196 7.121168 CCATGATGTTTACACTGAAGTTACCAT 59.879 37.037 0.00 0.00 0.00 3.55
196 197 7.433708 TGATGTTTACACTGAAGTTACCATG 57.566 36.000 0.00 0.00 0.00 3.66
197 198 7.220740 TGATGTTTACACTGAAGTTACCATGA 58.779 34.615 0.00 0.00 0.00 3.07
198 199 7.882791 TGATGTTTACACTGAAGTTACCATGAT 59.117 33.333 0.00 0.00 0.00 2.45
199 200 9.378551 GATGTTTACACTGAAGTTACCATGATA 57.621 33.333 0.00 0.00 0.00 2.15
200 201 9.905713 ATGTTTACACTGAAGTTACCATGATAT 57.094 29.630 0.00 0.00 0.00 1.63
201 202 9.161629 TGTTTACACTGAAGTTACCATGATATG 57.838 33.333 0.00 0.00 0.00 1.78
202 203 9.162764 GTTTACACTGAAGTTACCATGATATGT 57.837 33.333 0.00 0.00 0.00 2.29
203 204 9.733556 TTTACACTGAAGTTACCATGATATGTT 57.266 29.630 0.00 0.00 0.00 2.71
204 205 9.733556 TTACACTGAAGTTACCATGATATGTTT 57.266 29.630 0.00 0.00 0.00 2.83
205 206 8.268850 ACACTGAAGTTACCATGATATGTTTC 57.731 34.615 0.00 0.00 0.00 2.78
206 207 7.882791 ACACTGAAGTTACCATGATATGTTTCA 59.117 33.333 0.00 0.00 0.00 2.69
207 208 8.177663 CACTGAAGTTACCATGATATGTTTCAC 58.822 37.037 0.00 0.00 0.00 3.18
208 209 7.336931 ACTGAAGTTACCATGATATGTTTCACC 59.663 37.037 0.00 0.00 0.00 4.02
209 210 7.402054 TGAAGTTACCATGATATGTTTCACCT 58.598 34.615 0.00 0.00 0.00 4.00
210 211 8.544622 TGAAGTTACCATGATATGTTTCACCTA 58.455 33.333 0.00 0.00 0.00 3.08
211 212 9.561069 GAAGTTACCATGATATGTTTCACCTAT 57.439 33.333 0.00 0.00 0.00 2.57
212 213 9.920946 AAGTTACCATGATATGTTTCACCTATT 57.079 29.630 0.00 0.00 0.00 1.73
213 214 9.920946 AGTTACCATGATATGTTTCACCTATTT 57.079 29.630 0.00 0.00 0.00 1.40
217 218 9.479549 ACCATGATATGTTTCACCTATTTTCTT 57.520 29.630 0.00 0.00 0.00 2.52
218 219 9.956720 CCATGATATGTTTCACCTATTTTCTTC 57.043 33.333 0.00 0.00 0.00 2.87
231 232 9.793252 CACCTATTTTCTTCTACATTTTCATGG 57.207 33.333 0.00 0.00 34.27 3.66
232 233 9.533831 ACCTATTTTCTTCTACATTTTCATGGT 57.466 29.630 0.00 0.00 34.27 3.55
237 238 9.748708 TTTTCTTCTACATTTTCATGGTCAAAG 57.251 29.630 0.00 0.00 34.27 2.77
238 239 8.463930 TTCTTCTACATTTTCATGGTCAAAGT 57.536 30.769 0.00 0.00 34.27 2.66
239 240 9.567776 TTCTTCTACATTTTCATGGTCAAAGTA 57.432 29.630 0.00 0.00 34.27 2.24
240 241 8.999431 TCTTCTACATTTTCATGGTCAAAGTAC 58.001 33.333 0.00 0.00 34.27 2.73
241 242 8.918202 TTCTACATTTTCATGGTCAAAGTACT 57.082 30.769 0.00 0.00 34.27 2.73
242 243 8.322906 TCTACATTTTCATGGTCAAAGTACTG 57.677 34.615 0.00 0.00 34.27 2.74
243 244 6.331369 ACATTTTCATGGTCAAAGTACTGG 57.669 37.500 0.00 0.00 34.27 4.00
244 245 6.068010 ACATTTTCATGGTCAAAGTACTGGA 58.932 36.000 0.00 0.00 34.27 3.86
245 246 6.549364 ACATTTTCATGGTCAAAGTACTGGAA 59.451 34.615 0.00 0.00 34.27 3.53
246 247 7.233348 ACATTTTCATGGTCAAAGTACTGGAAT 59.767 33.333 0.00 0.00 34.27 3.01
247 248 7.595819 TTTTCATGGTCAAAGTACTGGAATT 57.404 32.000 0.00 0.00 0.00 2.17
248 249 6.573664 TTCATGGTCAAAGTACTGGAATTG 57.426 37.500 0.00 0.00 0.00 2.32
249 250 4.458989 TCATGGTCAAAGTACTGGAATTGC 59.541 41.667 0.00 0.00 0.00 3.56
250 251 3.153919 TGGTCAAAGTACTGGAATTGCC 58.846 45.455 0.00 4.17 37.10 4.52
251 252 3.153919 GGTCAAAGTACTGGAATTGCCA 58.846 45.455 0.00 0.00 46.96 4.92
284 285 9.995003 AAAAACTAAAATTGCCATGATCTACAA 57.005 25.926 0.00 0.00 0.00 2.41
285 286 9.995003 AAAACTAAAATTGCCATGATCTACAAA 57.005 25.926 0.00 0.00 0.00 2.83
286 287 8.986477 AACTAAAATTGCCATGATCTACAAAC 57.014 30.769 0.00 0.00 0.00 2.93
287 288 8.353423 ACTAAAATTGCCATGATCTACAAACT 57.647 30.769 0.00 0.00 0.00 2.66
288 289 9.461312 ACTAAAATTGCCATGATCTACAAACTA 57.539 29.630 0.00 0.00 0.00 2.24
318 319 4.923281 CCACATGGCAACTTTAGTTTAAGC 59.077 41.667 0.00 0.00 35.83 3.09
319 320 5.508825 CCACATGGCAACTTTAGTTTAAGCA 60.509 40.000 0.00 0.00 35.83 3.91
320 321 5.402270 CACATGGCAACTTTAGTTTAAGCAC 59.598 40.000 0.00 0.00 35.83 4.40
321 322 5.301805 ACATGGCAACTTTAGTTTAAGCACT 59.698 36.000 0.00 0.00 35.83 4.40
322 323 6.488683 ACATGGCAACTTTAGTTTAAGCACTA 59.511 34.615 0.00 0.00 35.83 2.74
323 324 7.176690 ACATGGCAACTTTAGTTTAAGCACTAT 59.823 33.333 0.00 0.00 35.83 2.12
324 325 7.519032 TGGCAACTTTAGTTTAAGCACTATT 57.481 32.000 5.98 0.00 35.83 1.73
325 326 7.367285 TGGCAACTTTAGTTTAAGCACTATTG 58.633 34.615 5.98 0.00 35.83 1.90
326 327 6.308041 GGCAACTTTAGTTTAAGCACTATTGC 59.692 38.462 11.99 11.99 42.04 3.56
327 328 6.861055 GCAACTTTAGTTTAAGCACTATTGCA 59.139 34.615 7.88 0.00 43.29 4.08
328 329 7.381139 GCAACTTTAGTTTAAGCACTATTGCAA 59.619 33.333 0.00 0.00 43.29 4.08
329 330 8.690840 CAACTTTAGTTTAAGCACTATTGCAAC 58.309 33.333 0.00 3.55 43.29 4.17
330 331 8.630037 AACTTTAGTTTAAGCACTATTGCAACT 58.370 29.630 0.00 10.38 42.87 3.16
342 343 7.184800 CACTATTGCAACTACAGTGTAAACA 57.815 36.000 17.68 0.00 33.53 2.83
343 344 7.806690 CACTATTGCAACTACAGTGTAAACAT 58.193 34.615 17.68 0.00 33.53 2.71
344 345 7.957484 CACTATTGCAACTACAGTGTAAACATC 59.043 37.037 17.68 0.00 33.53 3.06
345 346 6.875948 ATTGCAACTACAGTGTAAACATCA 57.124 33.333 0.00 0.00 0.00 3.07
346 347 6.875948 TTGCAACTACAGTGTAAACATCAT 57.124 33.333 4.21 0.00 0.00 2.45
347 348 6.239908 TGCAACTACAGTGTAAACATCATG 57.760 37.500 4.21 0.00 0.00 3.07
348 349 5.181056 TGCAACTACAGTGTAAACATCATGG 59.819 40.000 4.21 0.00 0.00 3.66
349 350 5.631026 CAACTACAGTGTAAACATCATGGC 58.369 41.667 4.21 0.00 0.00 4.40
350 351 4.905429 ACTACAGTGTAAACATCATGGCA 58.095 39.130 4.21 0.00 0.00 4.92
351 352 5.312895 ACTACAGTGTAAACATCATGGCAA 58.687 37.500 4.21 0.00 0.00 4.52
352 353 4.503741 ACAGTGTAAACATCATGGCAAC 57.496 40.909 0.00 0.00 0.00 4.17
353 354 4.144297 ACAGTGTAAACATCATGGCAACT 58.856 39.130 0.00 0.00 37.61 3.16
354 355 4.584325 ACAGTGTAAACATCATGGCAACTT 59.416 37.500 0.00 0.00 37.61 2.66
355 356 5.068987 ACAGTGTAAACATCATGGCAACTTT 59.931 36.000 0.00 0.00 37.61 2.66
356 357 5.984926 CAGTGTAAACATCATGGCAACTTTT 59.015 36.000 0.00 0.00 37.61 2.27
357 358 5.984926 AGTGTAAACATCATGGCAACTTTTG 59.015 36.000 0.00 0.00 37.61 2.44
358 359 5.177327 GTGTAAACATCATGGCAACTTTTGG 59.823 40.000 0.00 0.00 37.61 3.28
359 360 3.405823 AACATCATGGCAACTTTTGGG 57.594 42.857 0.00 0.00 37.61 4.12
360 361 2.328319 ACATCATGGCAACTTTTGGGT 58.672 42.857 0.00 0.00 37.61 4.51
361 362 3.505386 ACATCATGGCAACTTTTGGGTA 58.495 40.909 0.00 0.00 37.61 3.69
362 363 3.900601 ACATCATGGCAACTTTTGGGTAA 59.099 39.130 0.00 0.00 37.61 2.85
363 364 4.346418 ACATCATGGCAACTTTTGGGTAAA 59.654 37.500 0.00 0.00 37.61 2.01
364 365 5.163258 ACATCATGGCAACTTTTGGGTAAAA 60.163 36.000 0.00 0.00 34.75 1.52
365 366 5.359194 TCATGGCAACTTTTGGGTAAAAA 57.641 34.783 0.00 0.00 35.50 1.94
390 391 7.953305 AAAATCGTCGAAACATATCAACATG 57.047 32.000 0.00 0.00 0.00 3.21
391 392 5.657470 ATCGTCGAAACATATCAACATGG 57.343 39.130 0.00 0.00 0.00 3.66
392 393 3.868661 TCGTCGAAACATATCAACATGGG 59.131 43.478 0.00 0.00 0.00 4.00
393 394 3.002246 CGTCGAAACATATCAACATGGGG 59.998 47.826 0.00 0.00 0.00 4.96
394 395 2.948979 TCGAAACATATCAACATGGGGC 59.051 45.455 0.00 0.00 0.00 5.80
395 396 2.951642 CGAAACATATCAACATGGGGCT 59.048 45.455 0.00 0.00 0.00 5.19
396 397 4.133820 CGAAACATATCAACATGGGGCTA 58.866 43.478 0.00 0.00 0.00 3.93
397 398 4.214119 CGAAACATATCAACATGGGGCTAG 59.786 45.833 0.00 0.00 0.00 3.42
398 399 4.796110 AACATATCAACATGGGGCTAGT 57.204 40.909 0.00 0.00 0.00 2.57
399 400 4.796110 ACATATCAACATGGGGCTAGTT 57.204 40.909 0.00 0.00 0.00 2.24
400 401 5.129368 ACATATCAACATGGGGCTAGTTT 57.871 39.130 0.00 0.00 0.00 2.66
401 402 5.518865 ACATATCAACATGGGGCTAGTTTT 58.481 37.500 0.00 0.00 0.00 2.43
402 403 5.360714 ACATATCAACATGGGGCTAGTTTTG 59.639 40.000 0.00 0.00 0.00 2.44
403 404 3.517296 TCAACATGGGGCTAGTTTTGA 57.483 42.857 0.00 0.00 0.00 2.69
404 405 3.838565 TCAACATGGGGCTAGTTTTGAA 58.161 40.909 0.00 0.00 0.00 2.69
405 406 3.826157 TCAACATGGGGCTAGTTTTGAAG 59.174 43.478 0.00 0.00 0.00 3.02
406 407 3.806949 ACATGGGGCTAGTTTTGAAGA 57.193 42.857 0.00 0.00 0.00 2.87
407 408 4.322057 ACATGGGGCTAGTTTTGAAGAT 57.678 40.909 0.00 0.00 0.00 2.40
408 409 4.273318 ACATGGGGCTAGTTTTGAAGATC 58.727 43.478 0.00 0.00 0.00 2.75
409 410 4.018050 ACATGGGGCTAGTTTTGAAGATCT 60.018 41.667 0.00 0.00 0.00 2.75
410 411 4.222124 TGGGGCTAGTTTTGAAGATCTC 57.778 45.455 0.00 0.00 0.00 2.75
411 412 3.198872 GGGGCTAGTTTTGAAGATCTCG 58.801 50.000 0.00 0.00 0.00 4.04
412 413 3.369576 GGGGCTAGTTTTGAAGATCTCGT 60.370 47.826 0.00 0.00 0.00 4.18
413 414 4.254492 GGGCTAGTTTTGAAGATCTCGTT 58.746 43.478 0.00 0.00 0.00 3.85
414 415 4.093556 GGGCTAGTTTTGAAGATCTCGTTG 59.906 45.833 0.00 0.00 0.00 4.10
415 416 4.929808 GGCTAGTTTTGAAGATCTCGTTGA 59.070 41.667 0.00 0.00 0.00 3.18
416 417 5.062809 GGCTAGTTTTGAAGATCTCGTTGAG 59.937 44.000 0.00 0.00 0.00 3.02
417 418 5.864474 GCTAGTTTTGAAGATCTCGTTGAGA 59.136 40.000 0.00 0.00 43.20 3.27
418 419 6.183360 GCTAGTTTTGAAGATCTCGTTGAGAC 60.183 42.308 0.00 0.00 41.76 3.36
431 432 4.258935 CGTTGAGACGGATTTAATGGTG 57.741 45.455 0.00 0.00 45.32 4.17
432 433 3.930229 CGTTGAGACGGATTTAATGGTGA 59.070 43.478 0.00 0.00 45.32 4.02
433 434 4.390603 CGTTGAGACGGATTTAATGGTGAA 59.609 41.667 0.00 0.00 45.32 3.18
434 435 5.106869 CGTTGAGACGGATTTAATGGTGAAA 60.107 40.000 0.00 0.00 45.32 2.69
435 436 6.566942 CGTTGAGACGGATTTAATGGTGAAAA 60.567 38.462 0.00 0.00 45.32 2.29
436 437 6.249035 TGAGACGGATTTAATGGTGAAAAC 57.751 37.500 0.00 0.00 0.00 2.43
437 438 5.106869 TGAGACGGATTTAATGGTGAAAACG 60.107 40.000 0.00 0.00 0.00 3.60
438 439 4.155280 AGACGGATTTAATGGTGAAAACGG 59.845 41.667 0.00 0.00 0.00 4.44
439 440 4.073549 ACGGATTTAATGGTGAAAACGGA 58.926 39.130 0.00 0.00 0.00 4.69
440 441 4.703093 ACGGATTTAATGGTGAAAACGGAT 59.297 37.500 0.00 0.00 0.00 4.18
441 442 5.184287 ACGGATTTAATGGTGAAAACGGATT 59.816 36.000 0.00 0.00 0.00 3.01
442 443 6.096695 CGGATTTAATGGTGAAAACGGATTT 58.903 36.000 0.00 0.00 0.00 2.17
443 444 6.588373 CGGATTTAATGGTGAAAACGGATTTT 59.412 34.615 0.00 0.00 40.83 1.82
444 445 7.117092 CGGATTTAATGGTGAAAACGGATTTTT 59.883 33.333 0.00 0.00 38.17 1.94
445 446 9.425577 GGATTTAATGGTGAAAACGGATTTTTA 57.574 29.630 0.00 0.00 38.17 1.52
451 452 6.949449 TGGTGAAAACGGATTTTTAATTTGC 58.051 32.000 0.00 0.00 38.17 3.68
452 453 6.763610 TGGTGAAAACGGATTTTTAATTTGCT 59.236 30.769 0.00 0.00 38.17 3.91
453 454 7.281100 TGGTGAAAACGGATTTTTAATTTGCTT 59.719 29.630 0.00 0.00 38.17 3.91
454 455 8.126074 GGTGAAAACGGATTTTTAATTTGCTTT 58.874 29.630 0.00 0.00 38.17 3.51
455 456 9.497030 GTGAAAACGGATTTTTAATTTGCTTTT 57.503 25.926 0.00 0.00 38.17 2.27
456 457 9.709600 TGAAAACGGATTTTTAATTTGCTTTTC 57.290 25.926 0.00 0.00 38.17 2.29
457 458 9.709600 GAAAACGGATTTTTAATTTGCTTTTCA 57.290 25.926 0.00 0.00 38.17 2.69
487 488 9.974980 AGAAGATAAAACATTTTTAAGCCGAAA 57.025 25.926 0.00 0.00 0.00 3.46
490 491 8.984764 AGATAAAACATTTTTAAGCCGAAAACC 58.015 29.630 0.00 0.00 0.00 3.27
491 492 6.986904 AAAACATTTTTAAGCCGAAAACCA 57.013 29.167 0.00 0.00 0.00 3.67
492 493 6.986904 AAACATTTTTAAGCCGAAAACCAA 57.013 29.167 0.00 0.00 0.00 3.67
493 494 6.986904 AACATTTTTAAGCCGAAAACCAAA 57.013 29.167 0.00 0.00 0.00 3.28
494 495 6.986904 ACATTTTTAAGCCGAAAACCAAAA 57.013 29.167 0.00 0.00 0.00 2.44
495 496 7.379098 ACATTTTTAAGCCGAAAACCAAAAA 57.621 28.000 0.00 0.00 31.65 1.94
525 526 9.981114 TTATGTTGATGTCATCTATTCATACGT 57.019 29.630 13.90 0.00 0.00 3.57
526 527 7.698836 TGTTGATGTCATCTATTCATACGTG 57.301 36.000 13.90 0.00 0.00 4.49
527 528 6.701400 TGTTGATGTCATCTATTCATACGTGG 59.299 38.462 13.90 0.00 0.00 4.94
528 529 5.230182 TGATGTCATCTATTCATACGTGGC 58.770 41.667 13.90 0.00 0.00 5.01
529 530 4.664150 TGTCATCTATTCATACGTGGCA 57.336 40.909 0.00 0.00 0.00 4.92
530 531 5.017294 TGTCATCTATTCATACGTGGCAA 57.983 39.130 0.00 0.00 0.00 4.52
531 532 5.423886 TGTCATCTATTCATACGTGGCAAA 58.576 37.500 0.00 0.00 0.00 3.68
532 533 5.877564 TGTCATCTATTCATACGTGGCAAAA 59.122 36.000 0.00 0.00 0.00 2.44
533 534 6.542005 TGTCATCTATTCATACGTGGCAAAAT 59.458 34.615 0.00 0.00 0.00 1.82
534 535 6.852853 GTCATCTATTCATACGTGGCAAAATG 59.147 38.462 0.00 0.00 0.00 2.32
535 536 5.749596 TCTATTCATACGTGGCAAAATGG 57.250 39.130 0.00 0.00 0.00 3.16
536 537 3.799281 ATTCATACGTGGCAAAATGGG 57.201 42.857 0.00 0.00 0.00 4.00
537 538 2.208132 TCATACGTGGCAAAATGGGT 57.792 45.000 0.00 0.00 0.00 4.51
538 539 1.815613 TCATACGTGGCAAAATGGGTG 59.184 47.619 0.00 0.00 0.00 4.61
539 540 1.815613 CATACGTGGCAAAATGGGTGA 59.184 47.619 0.00 0.00 0.00 4.02
540 541 2.208132 TACGTGGCAAAATGGGTGAT 57.792 45.000 0.00 0.00 0.00 3.06
541 542 0.602562 ACGTGGCAAAATGGGTGATG 59.397 50.000 0.00 0.00 0.00 3.07
542 543 0.887247 CGTGGCAAAATGGGTGATGA 59.113 50.000 0.00 0.00 0.00 2.92
543 544 1.477700 CGTGGCAAAATGGGTGATGAT 59.522 47.619 0.00 0.00 0.00 2.45
544 545 2.736081 CGTGGCAAAATGGGTGATGATG 60.736 50.000 0.00 0.00 0.00 3.07
545 546 1.832366 TGGCAAAATGGGTGATGATGG 59.168 47.619 0.00 0.00 0.00 3.51
546 547 2.109774 GGCAAAATGGGTGATGATGGA 58.890 47.619 0.00 0.00 0.00 3.41
547 548 2.101917 GGCAAAATGGGTGATGATGGAG 59.898 50.000 0.00 0.00 0.00 3.86
548 549 2.101917 GCAAAATGGGTGATGATGGAGG 59.898 50.000 0.00 0.00 0.00 4.30
549 550 2.077687 AAATGGGTGATGATGGAGGC 57.922 50.000 0.00 0.00 0.00 4.70
550 551 0.179009 AATGGGTGATGATGGAGGCG 60.179 55.000 0.00 0.00 0.00 5.52
551 552 1.348008 ATGGGTGATGATGGAGGCGT 61.348 55.000 0.00 0.00 0.00 5.68
552 553 1.524621 GGGTGATGATGGAGGCGTG 60.525 63.158 0.00 0.00 0.00 5.34
553 554 1.221840 GGTGATGATGGAGGCGTGT 59.778 57.895 0.00 0.00 0.00 4.49
554 555 1.091771 GGTGATGATGGAGGCGTGTG 61.092 60.000 0.00 0.00 0.00 3.82
555 556 1.091771 GTGATGATGGAGGCGTGTGG 61.092 60.000 0.00 0.00 0.00 4.17
556 557 1.524621 GATGATGGAGGCGTGTGGG 60.525 63.158 0.00 0.00 0.00 4.61
557 558 3.704231 ATGATGGAGGCGTGTGGGC 62.704 63.158 0.00 0.00 42.69 5.36
564 565 3.192922 GGCGTGTGGGCGATGTAC 61.193 66.667 0.00 0.00 0.00 2.90
565 566 2.433491 GCGTGTGGGCGATGTACA 60.433 61.111 0.00 0.00 0.00 2.90
566 567 2.030401 GCGTGTGGGCGATGTACAA 61.030 57.895 0.00 0.00 0.00 2.41
567 568 1.570347 GCGTGTGGGCGATGTACAAA 61.570 55.000 0.00 0.00 0.00 2.83
568 569 0.165079 CGTGTGGGCGATGTACAAAC 59.835 55.000 0.00 0.00 0.00 2.93
569 570 0.519961 GTGTGGGCGATGTACAAACC 59.480 55.000 0.00 1.26 0.00 3.27
570 571 0.606944 TGTGGGCGATGTACAAACCC 60.607 55.000 19.41 19.41 41.24 4.11
571 572 1.001887 TGGGCGATGTACAAACCCC 60.002 57.895 21.97 19.46 40.04 4.95
572 573 1.001887 GGGCGATGTACAAACCCCA 60.002 57.895 16.68 0.00 34.23 4.96
573 574 1.310216 GGGCGATGTACAAACCCCAC 61.310 60.000 16.68 0.00 34.23 4.61
574 575 1.310216 GGCGATGTACAAACCCCACC 61.310 60.000 0.00 0.00 0.00 4.61
575 576 1.310216 GCGATGTACAAACCCCACCC 61.310 60.000 0.00 0.00 0.00 4.61
576 577 0.037017 CGATGTACAAACCCCACCCA 59.963 55.000 0.00 0.00 0.00 4.51
577 578 1.545875 CGATGTACAAACCCCACCCAA 60.546 52.381 0.00 0.00 0.00 4.12
578 579 2.599677 GATGTACAAACCCCACCCAAA 58.400 47.619 0.00 0.00 0.00 3.28
579 580 2.777459 TGTACAAACCCCACCCAAAT 57.223 45.000 0.00 0.00 0.00 2.32
580 581 2.599677 TGTACAAACCCCACCCAAATC 58.400 47.619 0.00 0.00 0.00 2.17
581 582 2.178106 TGTACAAACCCCACCCAAATCT 59.822 45.455 0.00 0.00 0.00 2.40
582 583 2.487746 ACAAACCCCACCCAAATCTT 57.512 45.000 0.00 0.00 0.00 2.40
583 584 2.770447 ACAAACCCCACCCAAATCTTT 58.230 42.857 0.00 0.00 0.00 2.52
584 585 3.119319 ACAAACCCCACCCAAATCTTTT 58.881 40.909 0.00 0.00 0.00 2.27
585 586 3.525609 ACAAACCCCACCCAAATCTTTTT 59.474 39.130 0.00 0.00 0.00 1.94
586 587 4.133820 CAAACCCCACCCAAATCTTTTTC 58.866 43.478 0.00 0.00 0.00 2.29
587 588 2.334977 ACCCCACCCAAATCTTTTTCC 58.665 47.619 0.00 0.00 0.00 3.13
588 589 2.334023 CCCCACCCAAATCTTTTTCCA 58.666 47.619 0.00 0.00 0.00 3.53
589 590 2.912295 CCCCACCCAAATCTTTTTCCAT 59.088 45.455 0.00 0.00 0.00 3.41
590 591 3.330405 CCCCACCCAAATCTTTTTCCATT 59.670 43.478 0.00 0.00 0.00 3.16
591 592 4.534103 CCCCACCCAAATCTTTTTCCATTA 59.466 41.667 0.00 0.00 0.00 1.90
592 593 5.191522 CCCCACCCAAATCTTTTTCCATTAT 59.808 40.000 0.00 0.00 0.00 1.28
593 594 6.296952 CCCCACCCAAATCTTTTTCCATTATT 60.297 38.462 0.00 0.00 0.00 1.40
594 595 7.174413 CCCACCCAAATCTTTTTCCATTATTT 58.826 34.615 0.00 0.00 0.00 1.40
595 596 7.669304 CCCACCCAAATCTTTTTCCATTATTTT 59.331 33.333 0.00 0.00 0.00 1.82
596 597 9.076781 CCACCCAAATCTTTTTCCATTATTTTT 57.923 29.630 0.00 0.00 0.00 1.94
627 628 0.247460 TCTCGGACTTGACCTGCATG 59.753 55.000 0.00 0.00 0.00 4.06
629 630 2.743752 CGGACTTGACCTGCATGCG 61.744 63.158 14.09 7.87 0.00 4.73
645 646 2.440247 CGCATCTTCCCAACCCCC 60.440 66.667 0.00 0.00 0.00 5.40
688 689 2.596338 CAACGACCACCCAACCCC 60.596 66.667 0.00 0.00 0.00 4.95
703 704 1.770294 ACCCCGCAGAAACAGAAAAA 58.230 45.000 0.00 0.00 0.00 1.94
704 705 2.316108 ACCCCGCAGAAACAGAAAAAT 58.684 42.857 0.00 0.00 0.00 1.82
705 706 2.296190 ACCCCGCAGAAACAGAAAAATC 59.704 45.455 0.00 0.00 0.00 2.17
706 707 2.352715 CCCCGCAGAAACAGAAAAATCC 60.353 50.000 0.00 0.00 0.00 3.01
707 708 2.584791 CCGCAGAAACAGAAAAATCCG 58.415 47.619 0.00 0.00 0.00 4.18
708 709 2.225491 CCGCAGAAACAGAAAAATCCGA 59.775 45.455 0.00 0.00 0.00 4.55
709 710 3.482786 CGCAGAAACAGAAAAATCCGAG 58.517 45.455 0.00 0.00 0.00 4.63
711 712 3.304659 GCAGAAACAGAAAAATCCGAGCA 60.305 43.478 0.00 0.00 0.00 4.26
713 714 4.023707 CAGAAACAGAAAAATCCGAGCACT 60.024 41.667 0.00 0.00 0.00 4.40
714 715 3.904136 AACAGAAAAATCCGAGCACTG 57.096 42.857 0.00 0.00 0.00 3.66
715 716 3.126001 ACAGAAAAATCCGAGCACTGA 57.874 42.857 0.00 0.00 0.00 3.41
780 781 3.780040 AACGCCCAACCAACGTTTTCG 62.780 52.381 0.00 0.00 46.96 3.46
895 905 1.402107 AAAGCAGCCCACCAAACAGG 61.402 55.000 0.00 0.00 45.67 4.00
989 1004 2.264455 CCATCCAAAAATCCCCAACCA 58.736 47.619 0.00 0.00 0.00 3.67
990 1005 2.641815 CCATCCAAAAATCCCCAACCAA 59.358 45.455 0.00 0.00 0.00 3.67
991 1006 3.307621 CCATCCAAAAATCCCCAACCAAG 60.308 47.826 0.00 0.00 0.00 3.61
993 1008 1.607767 CCAAAAATCCCCAACCAAGCG 60.608 52.381 0.00 0.00 0.00 4.68
994 1009 0.034756 AAAAATCCCCAACCAAGCGC 59.965 50.000 0.00 0.00 0.00 5.92
995 1010 2.153547 AAAATCCCCAACCAAGCGCG 62.154 55.000 0.00 0.00 0.00 6.86
1079 1094 2.804931 CGACATCGTCACGCTGCA 60.805 61.111 0.00 0.00 32.09 4.41
1080 1095 2.772189 GACATCGTCACGCTGCAC 59.228 61.111 0.00 0.00 32.09 4.57
1081 1096 2.021584 GACATCGTCACGCTGCACA 61.022 57.895 0.00 0.00 32.09 4.57
1082 1097 1.556591 GACATCGTCACGCTGCACAA 61.557 55.000 0.00 0.00 32.09 3.33
1083 1098 1.131218 CATCGTCACGCTGCACAAG 59.869 57.895 0.00 0.00 0.00 3.16
1084 1099 2.029288 ATCGTCACGCTGCACAAGG 61.029 57.895 0.00 0.00 0.00 3.61
1229 1543 2.197875 GCCCTCCGCCTCCTACTA 59.802 66.667 0.00 0.00 0.00 1.82
1257 1589 1.075600 CTCCACCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1614 1946 1.303561 TTTGCTGCCGCTCTCCATT 60.304 52.632 0.70 0.00 36.97 3.16
1752 2084 2.203480 GGTGGGGAGCAGCACAAA 60.203 61.111 0.00 0.00 0.00 2.83
2049 2381 1.076485 AGAGGGTGATTGCCATGGC 60.076 57.895 30.54 30.54 42.35 4.40
2106 2438 0.687757 CCCTCGAGGATCCAGACCAA 60.688 60.000 33.39 0.00 38.24 3.67
2180 2512 4.228210 TGGTGAAGCTAATGAAGAGGGAAT 59.772 41.667 0.00 0.00 0.00 3.01
2181 2513 5.428457 TGGTGAAGCTAATGAAGAGGGAATA 59.572 40.000 0.00 0.00 0.00 1.75
2197 2529 2.294512 GGAATAGCCAAGCCTGCATTAC 59.705 50.000 0.00 0.00 36.34 1.89
2205 2537 4.038402 GCCAAGCCTGCATTACTAATTGAT 59.962 41.667 0.00 0.00 0.00 2.57
2212 2544 7.504911 AGCCTGCATTACTAATTGATGATCTTT 59.495 33.333 0.00 0.00 0.00 2.52
2239 2571 2.930682 GAGGATACCGTTGAAGTGAAGC 59.069 50.000 0.00 0.00 37.17 3.86
2241 2573 2.930682 GGATACCGTTGAAGTGAAGCTC 59.069 50.000 0.00 0.00 0.00 4.09
2328 2660 2.046314 GCGGCCTTGCTTCCTACA 60.046 61.111 0.00 0.00 0.00 2.74
2330 2662 1.596934 CGGCCTTGCTTCCTACAGA 59.403 57.895 0.00 0.00 0.00 3.41
2358 2690 3.565307 TGAAAAAGATGGTGAGTTGGCT 58.435 40.909 0.00 0.00 0.00 4.75
2373 2705 3.515502 AGTTGGCTGCAGATACAGAACTA 59.484 43.478 20.43 0.00 40.25 2.24
2379 2711 4.499019 GCTGCAGATACAGAACTAGAGGTC 60.499 50.000 20.43 0.00 40.25 3.85
2380 2712 4.861196 TGCAGATACAGAACTAGAGGTCT 58.139 43.478 0.00 0.00 0.00 3.85
2440 2772 5.945784 CCAGAGGAATTTGACTCACCAATTA 59.054 40.000 8.01 0.00 36.20 1.40
2500 2832 2.562298 GTGGAAGATGGTTGCAATTCCA 59.438 45.455 21.92 21.92 45.38 3.53
2667 2999 3.317430 AGCAGTTTGAAAAGGAAGCTCTG 59.683 43.478 0.00 0.00 0.00 3.35
2695 3027 3.396276 TGGGGACTGTATTCTTGGTTTGA 59.604 43.478 0.00 0.00 0.00 2.69
2708 3040 6.012658 TCTTGGTTTGAATTTCGAAGATGG 57.987 37.500 0.00 0.00 35.04 3.51
2709 3041 5.767665 TCTTGGTTTGAATTTCGAAGATGGA 59.232 36.000 0.00 0.00 35.04 3.41
2736 3068 5.639931 GGAAGAACCTAGTTGTGAAGATGTC 59.360 44.000 0.00 0.00 35.41 3.06
2805 3137 2.002586 CTGCAGAATGTAGTTCCACCG 58.997 52.381 8.42 0.00 44.30 4.94
3282 3614 6.975949 TCTAGAGTCTTCAGGAAGGTTAGAT 58.024 40.000 9.03 0.00 38.88 1.98
3309 3641 4.025040 TCTTGTCCTGCTTGTTCATGAT 57.975 40.909 0.00 0.00 0.00 2.45
3444 3780 2.744741 CCTCGGGAAAGAAGAAGAAAGC 59.255 50.000 0.00 0.00 0.00 3.51
3793 4132 2.775911 TGAGGCTTGATTCTGGAGTG 57.224 50.000 0.00 0.00 0.00 3.51
3808 4147 1.909302 GGAGTGGTGGATGAAGAGGAA 59.091 52.381 0.00 0.00 0.00 3.36
3973 4312 3.346315 TCTCATGGTTCAATTGCGTGAT 58.654 40.909 0.00 0.00 0.00 3.06
3988 4327 3.532892 CGTGATCCGCTACGTAACTAT 57.467 47.619 0.00 0.00 35.70 2.12
3994 4333 1.662309 CCGCTACGTAACTATGAGCCG 60.662 57.143 0.00 0.00 0.00 5.52
4070 4409 1.421646 AGCCCAAGATATACAGCACCC 59.578 52.381 0.00 0.00 0.00 4.61
4109 4448 4.141756 ACAGTGAGCAAGATTATGAGGAGG 60.142 45.833 0.00 0.00 0.00 4.30
4110 4449 4.100653 CAGTGAGCAAGATTATGAGGAGGA 59.899 45.833 0.00 0.00 0.00 3.71
4111 4450 4.344679 AGTGAGCAAGATTATGAGGAGGAG 59.655 45.833 0.00 0.00 0.00 3.69
4164 4506 4.933330 TCGGTCGATGAAGAAAAGATAGG 58.067 43.478 0.00 0.00 0.00 2.57
4166 4508 3.810386 GGTCGATGAAGAAAAGATAGGGC 59.190 47.826 0.00 0.00 0.00 5.19
4201 4543 6.843752 TCCCCAATTTAAAGTCACAGAAGTA 58.156 36.000 0.00 0.00 0.00 2.24
4205 4547 8.237267 CCCAATTTAAAGTCACAGAAGTACATC 58.763 37.037 0.00 0.00 0.00 3.06
4240 4582 3.006752 AGAGTGAGCCTGAGAAGACAAAG 59.993 47.826 0.00 0.00 0.00 2.77
4303 4645 2.446848 GCTAGGAGCTGGCATGGGA 61.447 63.158 0.00 0.00 37.89 4.37
4327 4669 2.251409 GCAGCAAGCATCCTCTGATA 57.749 50.000 0.00 0.00 44.79 2.15
4342 4684 4.035675 CCTCTGATAAAATCGAAAGCCACC 59.964 45.833 0.00 0.00 0.00 4.61
4506 4848 1.128809 TTCCGGTGAGGGCTTTACCA 61.129 55.000 11.13 0.00 42.05 3.25
4564 4907 3.691342 GGCGGGTTTGGGCCTTTC 61.691 66.667 4.53 0.00 45.93 2.62
4565 4908 2.600470 GCGGGTTTGGGCCTTTCT 60.600 61.111 4.53 0.00 0.00 2.52
4595 4938 0.038526 CTGTGTAACCGAACCTCGCT 60.039 55.000 0.00 0.00 38.82 4.93
4640 4984 6.408548 CCTCCCATCCATATTAATAGACGCAT 60.409 42.308 1.02 0.00 0.00 4.73
4695 5040 6.183360 GGAGTACTAAAGTGCCAAATCATGTC 60.183 42.308 0.00 0.00 0.00 3.06
4736 5081 2.509052 TGCATAAGGAATCGTCTCGG 57.491 50.000 0.00 0.00 0.00 4.63
4801 5147 2.360475 AGCTCCCCTGCGCTTTTC 60.360 61.111 9.73 0.00 38.13 2.29
4876 8159 1.680555 CCCCCTGCGCTTAATTGTACA 60.681 52.381 9.73 0.00 0.00 2.90
4933 8217 2.095263 CCCACGAAGGTGCAGTTTTATG 60.095 50.000 0.00 0.00 43.00 1.90
4934 8218 2.552315 CCACGAAGGTGCAGTTTTATGT 59.448 45.455 0.00 0.00 43.00 2.29
4935 8219 3.364964 CCACGAAGGTGCAGTTTTATGTC 60.365 47.826 0.00 0.00 43.00 3.06
4936 8220 3.498397 CACGAAGGTGCAGTTTTATGTCT 59.502 43.478 0.00 0.00 37.35 3.41
4941 8225 5.852282 AGGTGCAGTTTTATGTCTTTGTT 57.148 34.783 0.00 0.00 0.00 2.83
5007 8295 5.657470 TTCTTTTGTTCTGTCTGTCATCG 57.343 39.130 0.00 0.00 0.00 3.84
5058 8346 3.004315 TCATGTGCGTCGCTATAATCTCA 59.996 43.478 19.50 5.32 0.00 3.27
5059 8347 3.000082 TGTGCGTCGCTATAATCTCAG 58.000 47.619 19.50 0.00 0.00 3.35
5060 8348 2.616842 TGTGCGTCGCTATAATCTCAGA 59.383 45.455 19.50 0.00 0.00 3.27
5061 8349 2.974536 GTGCGTCGCTATAATCTCAGAC 59.025 50.000 19.50 0.00 0.00 3.51
5063 8351 3.523142 CGTCGCTATAATCTCAGACGT 57.477 47.619 7.52 0.00 44.10 4.34
5111 8399 4.701651 CAGTGATGTTGCTATTTTCCTCCA 59.298 41.667 0.00 0.00 0.00 3.86
5112 8400 4.946157 AGTGATGTTGCTATTTTCCTCCAG 59.054 41.667 0.00 0.00 0.00 3.86
5155 8443 7.841282 TCCCAGGTTTTGTCATTTGTAATAA 57.159 32.000 0.00 0.00 0.00 1.40
5157 8445 8.705594 TCCCAGGTTTTGTCATTTGTAATAAAA 58.294 29.630 0.00 0.00 0.00 1.52
5158 8446 8.987890 CCCAGGTTTTGTCATTTGTAATAAAAG 58.012 33.333 0.00 0.00 0.00 2.27
5159 8447 8.987890 CCAGGTTTTGTCATTTGTAATAAAAGG 58.012 33.333 0.00 0.00 0.00 3.11
5160 8448 8.987890 CAGGTTTTGTCATTTGTAATAAAAGGG 58.012 33.333 0.00 0.00 0.00 3.95
5161 8449 8.929487 AGGTTTTGTCATTTGTAATAAAAGGGA 58.071 29.630 0.00 0.00 0.00 4.20
5303 8792 5.049543 GGGAGGATACGATACGAGTATATGC 60.050 48.000 0.00 0.00 46.39 3.14
5313 8802 2.965831 ACGAGTATATGCCATGACACCT 59.034 45.455 0.00 0.00 0.00 4.00
5353 8857 2.278657 TGTTATGATCCAGTGGGGGA 57.721 50.000 9.92 0.00 42.21 4.81
5408 8912 1.447317 GATTTCGCGGTGGGCATGAT 61.447 55.000 6.13 0.00 43.84 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.564574 CGGATCTTTAATCGGATTTTCCATTTA 58.435 33.333 8.76 0.00 35.91 1.40
34 35 7.068226 ACGGATCTTTAATCGGATTTTCCATTT 59.932 33.333 8.76 0.00 35.91 2.32
35 36 6.546034 ACGGATCTTTAATCGGATTTTCCATT 59.454 34.615 8.76 0.00 35.91 3.16
36 37 6.062095 ACGGATCTTTAATCGGATTTTCCAT 58.938 36.000 8.76 0.00 35.91 3.41
37 38 5.433526 ACGGATCTTTAATCGGATTTTCCA 58.566 37.500 8.76 0.00 35.91 3.53
38 39 6.373186 AACGGATCTTTAATCGGATTTTCC 57.627 37.500 8.76 7.24 0.00 3.13
39 40 7.966204 TGAAAACGGATCTTTAATCGGATTTTC 59.034 33.333 8.76 3.75 34.30 2.29
40 41 7.753580 GTGAAAACGGATCTTTAATCGGATTTT 59.246 33.333 8.76 0.00 0.00 1.82
41 42 7.248437 GTGAAAACGGATCTTTAATCGGATTT 58.752 34.615 8.76 1.34 0.00 2.17
42 43 6.183360 GGTGAAAACGGATCTTTAATCGGATT 60.183 38.462 8.49 8.49 0.00 3.01
43 44 5.296035 GGTGAAAACGGATCTTTAATCGGAT 59.704 40.000 0.00 0.00 0.00 4.18
44 45 4.632688 GGTGAAAACGGATCTTTAATCGGA 59.367 41.667 0.00 0.00 0.00 4.55
45 46 4.393680 TGGTGAAAACGGATCTTTAATCGG 59.606 41.667 0.00 0.00 0.00 4.18
46 47 5.539582 TGGTGAAAACGGATCTTTAATCG 57.460 39.130 0.00 0.00 0.00 3.34
47 48 9.849166 TTTAATGGTGAAAACGGATCTTTAATC 57.151 29.630 0.00 0.00 0.00 1.75
49 50 9.849166 GATTTAATGGTGAAAACGGATCTTTAA 57.151 29.630 0.00 0.00 0.00 1.52
50 51 8.463607 GGATTTAATGGTGAAAACGGATCTTTA 58.536 33.333 0.00 0.00 0.00 1.85
51 52 7.320399 GGATTTAATGGTGAAAACGGATCTTT 58.680 34.615 0.00 0.00 0.00 2.52
52 53 6.127451 GGGATTTAATGGTGAAAACGGATCTT 60.127 38.462 0.00 0.00 0.00 2.40
53 54 5.359860 GGGATTTAATGGTGAAAACGGATCT 59.640 40.000 0.00 0.00 0.00 2.75
54 55 5.359860 AGGGATTTAATGGTGAAAACGGATC 59.640 40.000 0.00 0.00 0.00 3.36
55 56 5.269189 AGGGATTTAATGGTGAAAACGGAT 58.731 37.500 0.00 0.00 0.00 4.18
56 57 4.668636 AGGGATTTAATGGTGAAAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
57 58 4.438200 CGAGGGATTTAATGGTGAAAACGG 60.438 45.833 0.00 0.00 0.00 4.44
58 59 4.658071 CGAGGGATTTAATGGTGAAAACG 58.342 43.478 0.00 0.00 0.00 3.60
59 60 4.421058 GCGAGGGATTTAATGGTGAAAAC 58.579 43.478 0.00 0.00 0.00 2.43
60 61 3.127895 CGCGAGGGATTTAATGGTGAAAA 59.872 43.478 0.00 0.00 0.00 2.29
61 62 2.680841 CGCGAGGGATTTAATGGTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
62 63 2.093394 TCGCGAGGGATTTAATGGTGAA 60.093 45.455 3.71 0.00 0.00 3.18
63 64 1.483004 TCGCGAGGGATTTAATGGTGA 59.517 47.619 3.71 0.00 0.00 4.02
64 65 1.948104 TCGCGAGGGATTTAATGGTG 58.052 50.000 3.71 0.00 0.00 4.17
65 66 2.104111 TCATCGCGAGGGATTTAATGGT 59.896 45.455 21.76 0.00 0.00 3.55
66 67 2.738846 CTCATCGCGAGGGATTTAATGG 59.261 50.000 21.76 0.53 38.18 3.16
67 68 3.653344 TCTCATCGCGAGGGATTTAATG 58.347 45.455 21.76 7.60 42.55 1.90
68 69 4.221703 AGATCTCATCGCGAGGGATTTAAT 59.778 41.667 21.76 8.75 42.55 1.40
69 70 3.574396 AGATCTCATCGCGAGGGATTTAA 59.426 43.478 21.76 0.00 42.55 1.52
70 71 3.157881 AGATCTCATCGCGAGGGATTTA 58.842 45.455 21.76 0.00 42.55 1.40
71 72 1.967066 AGATCTCATCGCGAGGGATTT 59.033 47.619 21.76 13.93 42.55 2.17
72 73 1.626686 AGATCTCATCGCGAGGGATT 58.373 50.000 21.76 5.43 42.55 3.01
73 74 1.543802 GAAGATCTCATCGCGAGGGAT 59.456 52.381 21.76 20.51 42.55 3.85
74 75 0.955178 GAAGATCTCATCGCGAGGGA 59.045 55.000 21.76 16.72 42.55 4.20
75 76 0.386605 CGAAGATCTCATCGCGAGGG 60.387 60.000 21.76 12.63 42.55 4.30
76 77 0.588737 TCGAAGATCTCATCGCGAGG 59.411 55.000 15.81 15.81 42.55 4.63
77 78 2.391322 TTCGAAGATCTCATCGCGAG 57.609 50.000 16.66 7.11 43.80 5.03
78 79 2.844122 TTTCGAAGATCTCATCGCGA 57.156 45.000 13.09 13.09 37.05 5.87
79 80 4.912187 TCTATTTTCGAAGATCTCATCGCG 59.088 41.667 11.22 0.00 37.05 5.87
80 81 6.942886 ATCTATTTTCGAAGATCTCATCGC 57.057 37.500 11.22 0.00 37.05 4.58
130 131 9.968870 AATAGGCACGACAACTTTTAATAAAAA 57.031 25.926 0.00 0.00 33.58 1.94
131 132 9.400638 CAATAGGCACGACAACTTTTAATAAAA 57.599 29.630 0.00 0.00 0.00 1.52
132 133 7.539366 GCAATAGGCACGACAACTTTTAATAAA 59.461 33.333 0.00 0.00 43.97 1.40
133 134 7.024768 GCAATAGGCACGACAACTTTTAATAA 58.975 34.615 0.00 0.00 43.97 1.40
134 135 6.548171 GCAATAGGCACGACAACTTTTAATA 58.452 36.000 0.00 0.00 43.97 0.98
135 136 5.399013 GCAATAGGCACGACAACTTTTAAT 58.601 37.500 0.00 0.00 43.97 1.40
136 137 4.789784 GCAATAGGCACGACAACTTTTAA 58.210 39.130 0.00 0.00 43.97 1.52
137 138 4.413495 GCAATAGGCACGACAACTTTTA 57.587 40.909 0.00 0.00 43.97 1.52
138 139 3.282831 GCAATAGGCACGACAACTTTT 57.717 42.857 0.00 0.00 43.97 2.27
139 140 2.989422 GCAATAGGCACGACAACTTT 57.011 45.000 0.00 0.00 43.97 2.66
149 150 7.919724 CATGGCAATTCATGTGCAATAGGCA 62.920 44.000 8.81 5.35 44.07 4.75
150 151 2.159071 TGGCAATTCATGTGCAATAGGC 60.159 45.455 8.81 2.50 44.07 3.93
151 152 3.804786 TGGCAATTCATGTGCAATAGG 57.195 42.857 8.81 0.00 44.07 2.57
152 153 4.939271 TCATGGCAATTCATGTGCAATAG 58.061 39.130 8.81 0.10 44.07 1.73
153 154 5.163395 ACATCATGGCAATTCATGTGCAATA 60.163 36.000 8.81 0.00 44.07 1.90
154 155 3.897141 TCATGGCAATTCATGTGCAAT 57.103 38.095 8.81 0.38 44.07 3.56
155 156 3.055747 ACATCATGGCAATTCATGTGCAA 60.056 39.130 8.81 0.00 44.07 4.08
156 157 2.498078 ACATCATGGCAATTCATGTGCA 59.502 40.909 8.81 0.00 44.07 4.57
157 158 3.173668 ACATCATGGCAATTCATGTGC 57.826 42.857 6.93 0.00 43.52 4.57
158 159 6.035220 GTGTAAACATCATGGCAATTCATGTG 59.965 38.462 6.93 7.27 43.52 3.21
159 160 6.071221 AGTGTAAACATCATGGCAATTCATGT 60.071 34.615 6.93 0.00 43.52 3.21
160 161 6.254804 CAGTGTAAACATCATGGCAATTCATG 59.745 38.462 0.00 1.56 44.20 3.07
161 162 6.153170 TCAGTGTAAACATCATGGCAATTCAT 59.847 34.615 0.00 0.00 0.00 2.57
162 163 5.476254 TCAGTGTAAACATCATGGCAATTCA 59.524 36.000 0.00 0.00 0.00 2.57
163 164 5.953183 TCAGTGTAAACATCATGGCAATTC 58.047 37.500 0.00 0.00 0.00 2.17
164 165 5.981088 TCAGTGTAAACATCATGGCAATT 57.019 34.783 0.00 0.00 0.00 2.32
165 166 5.477984 ACTTCAGTGTAAACATCATGGCAAT 59.522 36.000 0.00 0.00 0.00 3.56
166 167 4.826733 ACTTCAGTGTAAACATCATGGCAA 59.173 37.500 0.00 0.00 0.00 4.52
167 168 4.397420 ACTTCAGTGTAAACATCATGGCA 58.603 39.130 0.00 0.00 0.00 4.92
168 169 5.376854 AACTTCAGTGTAAACATCATGGC 57.623 39.130 0.00 0.00 0.00 4.40
169 170 6.429692 TGGTAACTTCAGTGTAAACATCATGG 59.570 38.462 0.00 0.00 37.61 3.66
170 171 7.433708 TGGTAACTTCAGTGTAAACATCATG 57.566 36.000 0.00 0.00 37.61 3.07
171 172 7.882791 TCATGGTAACTTCAGTGTAAACATCAT 59.117 33.333 0.00 0.00 37.61 2.45
172 173 7.220740 TCATGGTAACTTCAGTGTAAACATCA 58.779 34.615 0.00 0.00 37.61 3.07
173 174 7.667043 TCATGGTAACTTCAGTGTAAACATC 57.333 36.000 0.00 0.00 37.61 3.06
174 175 9.905713 ATATCATGGTAACTTCAGTGTAAACAT 57.094 29.630 0.00 0.00 37.61 2.71
175 176 9.161629 CATATCATGGTAACTTCAGTGTAAACA 57.838 33.333 0.00 0.00 37.61 2.83
176 177 9.162764 ACATATCATGGTAACTTCAGTGTAAAC 57.837 33.333 0.00 0.00 37.61 2.01
177 178 9.733556 AACATATCATGGTAACTTCAGTGTAAA 57.266 29.630 0.00 0.00 37.61 2.01
178 179 9.733556 AAACATATCATGGTAACTTCAGTGTAA 57.266 29.630 0.00 0.00 37.61 2.41
179 180 9.378551 GAAACATATCATGGTAACTTCAGTGTA 57.621 33.333 0.00 0.00 37.61 2.90
180 181 7.882791 TGAAACATATCATGGTAACTTCAGTGT 59.117 33.333 0.00 0.00 37.61 3.55
181 182 8.177663 GTGAAACATATCATGGTAACTTCAGTG 58.822 37.037 7.61 0.00 36.32 3.66
182 183 7.336931 GGTGAAACATATCATGGTAACTTCAGT 59.663 37.037 7.61 0.00 39.98 3.41
183 184 7.554118 AGGTGAAACATATCATGGTAACTTCAG 59.446 37.037 7.61 0.00 39.98 3.02
184 185 7.402054 AGGTGAAACATATCATGGTAACTTCA 58.598 34.615 0.00 0.00 39.98 3.02
185 186 7.865706 AGGTGAAACATATCATGGTAACTTC 57.134 36.000 0.00 0.00 39.98 3.01
186 187 9.920946 AATAGGTGAAACATATCATGGTAACTT 57.079 29.630 0.00 0.00 43.94 2.66
187 188 9.920946 AAATAGGTGAAACATATCATGGTAACT 57.079 29.630 0.00 0.00 43.94 2.24
191 192 9.479549 AAGAAAATAGGTGAAACATATCATGGT 57.520 29.630 0.00 0.00 43.94 3.55
192 193 9.956720 GAAGAAAATAGGTGAAACATATCATGG 57.043 33.333 0.00 0.00 43.94 3.66
205 206 9.793252 CCATGAAAATGTAGAAGAAAATAGGTG 57.207 33.333 0.00 0.00 0.00 4.00
206 207 9.533831 ACCATGAAAATGTAGAAGAAAATAGGT 57.466 29.630 0.00 0.00 0.00 3.08
211 212 9.748708 CTTTGACCATGAAAATGTAGAAGAAAA 57.251 29.630 0.00 0.00 0.00 2.29
212 213 8.912988 ACTTTGACCATGAAAATGTAGAAGAAA 58.087 29.630 0.00 0.00 0.00 2.52
213 214 8.463930 ACTTTGACCATGAAAATGTAGAAGAA 57.536 30.769 0.00 0.00 0.00 2.52
214 215 8.999431 GTACTTTGACCATGAAAATGTAGAAGA 58.001 33.333 0.00 0.00 0.00 2.87
215 216 9.003658 AGTACTTTGACCATGAAAATGTAGAAG 57.996 33.333 0.00 0.00 0.00 2.85
216 217 8.783093 CAGTACTTTGACCATGAAAATGTAGAA 58.217 33.333 0.00 0.00 0.00 2.10
217 218 7.390440 CCAGTACTTTGACCATGAAAATGTAGA 59.610 37.037 0.00 0.00 0.00 2.59
218 219 7.390440 TCCAGTACTTTGACCATGAAAATGTAG 59.610 37.037 0.00 0.00 0.00 2.74
219 220 7.227873 TCCAGTACTTTGACCATGAAAATGTA 58.772 34.615 0.00 0.00 0.00 2.29
220 221 6.068010 TCCAGTACTTTGACCATGAAAATGT 58.932 36.000 0.00 0.00 0.00 2.71
221 222 6.573664 TCCAGTACTTTGACCATGAAAATG 57.426 37.500 0.00 0.00 0.00 2.32
222 223 7.781324 ATTCCAGTACTTTGACCATGAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
223 224 7.432869 CAATTCCAGTACTTTGACCATGAAAA 58.567 34.615 0.00 0.00 0.00 2.29
224 225 6.516527 GCAATTCCAGTACTTTGACCATGAAA 60.517 38.462 8.83 0.00 0.00 2.69
225 226 5.048083 GCAATTCCAGTACTTTGACCATGAA 60.048 40.000 8.83 0.00 0.00 2.57
226 227 4.458989 GCAATTCCAGTACTTTGACCATGA 59.541 41.667 8.83 0.00 0.00 3.07
227 228 4.380867 GGCAATTCCAGTACTTTGACCATG 60.381 45.833 8.83 0.00 34.01 3.66
228 229 3.763897 GGCAATTCCAGTACTTTGACCAT 59.236 43.478 8.83 0.00 34.01 3.55
229 230 3.153919 GGCAATTCCAGTACTTTGACCA 58.846 45.455 8.83 0.00 34.01 4.02
230 231 3.153919 TGGCAATTCCAGTACTTTGACC 58.846 45.455 8.13 9.00 40.72 4.02
258 259 9.995003 TTGTAGATCATGGCAATTTTAGTTTTT 57.005 25.926 0.00 0.00 0.00 1.94
259 260 9.995003 TTTGTAGATCATGGCAATTTTAGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
260 261 9.423061 GTTTGTAGATCATGGCAATTTTAGTTT 57.577 29.630 0.00 0.00 0.00 2.66
261 262 8.806146 AGTTTGTAGATCATGGCAATTTTAGTT 58.194 29.630 0.00 0.00 0.00 2.24
262 263 8.353423 AGTTTGTAGATCATGGCAATTTTAGT 57.647 30.769 0.00 0.00 0.00 2.24
268 269 9.590451 CAAATTTAGTTTGTAGATCATGGCAAT 57.410 29.630 0.00 0.00 41.80 3.56
269 270 8.984891 CAAATTTAGTTTGTAGATCATGGCAA 57.015 30.769 0.00 0.00 41.80 4.52
295 296 4.923281 GCTTAAACTAAAGTTGCCATGTGG 59.077 41.667 0.00 0.00 38.44 4.17
296 297 5.402270 GTGCTTAAACTAAAGTTGCCATGTG 59.598 40.000 0.00 0.00 38.44 3.21
297 298 5.301805 AGTGCTTAAACTAAAGTTGCCATGT 59.698 36.000 0.00 0.00 38.44 3.21
298 299 5.772521 AGTGCTTAAACTAAAGTTGCCATG 58.227 37.500 0.00 0.00 38.44 3.66
299 300 7.703058 ATAGTGCTTAAACTAAAGTTGCCAT 57.297 32.000 0.00 0.00 38.44 4.40
300 301 7.367285 CAATAGTGCTTAAACTAAAGTTGCCA 58.633 34.615 0.00 0.00 38.44 4.92
301 302 7.796958 CAATAGTGCTTAAACTAAAGTTGCC 57.203 36.000 0.00 0.00 38.44 4.52
318 319 7.184800 TGTTTACACTGTAGTTGCAATAGTG 57.815 36.000 23.00 23.00 43.20 2.74
319 320 7.659799 TGATGTTTACACTGTAGTTGCAATAGT 59.340 33.333 0.59 2.60 0.00 2.12
320 321 8.028540 TGATGTTTACACTGTAGTTGCAATAG 57.971 34.615 0.59 1.94 0.00 1.73
321 322 7.971183 TGATGTTTACACTGTAGTTGCAATA 57.029 32.000 0.59 0.00 0.00 1.90
322 323 6.875948 TGATGTTTACACTGTAGTTGCAAT 57.124 33.333 0.59 0.00 0.00 3.56
323 324 6.293900 CCATGATGTTTACACTGTAGTTGCAA 60.294 38.462 0.00 0.00 0.00 4.08
324 325 5.181056 CCATGATGTTTACACTGTAGTTGCA 59.819 40.000 0.00 0.00 0.00 4.08
325 326 5.631026 CCATGATGTTTACACTGTAGTTGC 58.369 41.667 0.00 0.00 0.00 4.17
326 327 5.181056 TGCCATGATGTTTACACTGTAGTTG 59.819 40.000 0.00 0.00 0.00 3.16
327 328 5.312895 TGCCATGATGTTTACACTGTAGTT 58.687 37.500 0.00 0.00 0.00 2.24
328 329 4.905429 TGCCATGATGTTTACACTGTAGT 58.095 39.130 0.00 0.00 0.00 2.73
329 330 5.412594 AGTTGCCATGATGTTTACACTGTAG 59.587 40.000 0.00 0.00 0.00 2.74
330 331 5.312895 AGTTGCCATGATGTTTACACTGTA 58.687 37.500 0.00 0.00 0.00 2.74
331 332 4.144297 AGTTGCCATGATGTTTACACTGT 58.856 39.130 0.00 0.00 0.00 3.55
332 333 4.771590 AGTTGCCATGATGTTTACACTG 57.228 40.909 0.00 0.00 0.00 3.66
333 334 5.789643 AAAGTTGCCATGATGTTTACACT 57.210 34.783 0.00 0.00 0.00 3.55
334 335 5.177327 CCAAAAGTTGCCATGATGTTTACAC 59.823 40.000 0.00 0.00 0.00 2.90
335 336 5.295950 CCAAAAGTTGCCATGATGTTTACA 58.704 37.500 0.00 0.00 0.00 2.41
336 337 4.690280 CCCAAAAGTTGCCATGATGTTTAC 59.310 41.667 0.00 0.00 0.00 2.01
337 338 4.346418 ACCCAAAAGTTGCCATGATGTTTA 59.654 37.500 0.00 0.00 0.00 2.01
338 339 3.136260 ACCCAAAAGTTGCCATGATGTTT 59.864 39.130 0.00 0.00 0.00 2.83
339 340 2.705127 ACCCAAAAGTTGCCATGATGTT 59.295 40.909 0.00 0.00 0.00 2.71
340 341 2.328319 ACCCAAAAGTTGCCATGATGT 58.672 42.857 0.00 0.00 0.00 3.06
341 342 4.533919 TTACCCAAAAGTTGCCATGATG 57.466 40.909 0.00 0.00 0.00 3.07
342 343 5.559148 TTTTACCCAAAAGTTGCCATGAT 57.441 34.783 0.00 0.00 0.00 2.45
343 344 5.359194 TTTTTACCCAAAAGTTGCCATGA 57.641 34.783 0.00 0.00 35.15 3.07
365 366 7.484641 CCATGTTGATATGTTTCGACGATTTTT 59.515 33.333 0.00 0.00 33.42 1.94
366 367 6.966632 CCATGTTGATATGTTTCGACGATTTT 59.033 34.615 0.00 0.00 33.42 1.82
367 368 6.458206 CCCATGTTGATATGTTTCGACGATTT 60.458 38.462 0.00 0.00 33.42 2.17
368 369 5.007626 CCCATGTTGATATGTTTCGACGATT 59.992 40.000 0.00 0.00 33.42 3.34
369 370 4.511454 CCCATGTTGATATGTTTCGACGAT 59.489 41.667 0.00 0.00 33.42 3.73
370 371 3.868661 CCCATGTTGATATGTTTCGACGA 59.131 43.478 0.00 0.00 33.42 4.20
371 372 3.002246 CCCCATGTTGATATGTTTCGACG 59.998 47.826 0.00 0.00 33.42 5.12
372 373 3.243068 GCCCCATGTTGATATGTTTCGAC 60.243 47.826 0.00 0.00 0.00 4.20
373 374 2.948979 GCCCCATGTTGATATGTTTCGA 59.051 45.455 0.00 0.00 0.00 3.71
374 375 2.951642 AGCCCCATGTTGATATGTTTCG 59.048 45.455 0.00 0.00 0.00 3.46
375 376 5.133221 ACTAGCCCCATGTTGATATGTTTC 58.867 41.667 0.00 0.00 0.00 2.78
376 377 5.129368 ACTAGCCCCATGTTGATATGTTT 57.871 39.130 0.00 0.00 0.00 2.83
377 378 4.796110 ACTAGCCCCATGTTGATATGTT 57.204 40.909 0.00 0.00 0.00 2.71
378 379 4.796110 AACTAGCCCCATGTTGATATGT 57.204 40.909 0.00 0.00 0.00 2.29
379 380 5.593909 TCAAAACTAGCCCCATGTTGATATG 59.406 40.000 0.00 0.00 0.00 1.78
380 381 5.765510 TCAAAACTAGCCCCATGTTGATAT 58.234 37.500 0.00 0.00 0.00 1.63
381 382 5.186256 TCAAAACTAGCCCCATGTTGATA 57.814 39.130 0.00 0.00 0.00 2.15
382 383 4.046286 TCAAAACTAGCCCCATGTTGAT 57.954 40.909 0.00 0.00 0.00 2.57
383 384 3.517296 TCAAAACTAGCCCCATGTTGA 57.483 42.857 0.00 0.00 0.00 3.18
384 385 3.826157 TCTTCAAAACTAGCCCCATGTTG 59.174 43.478 0.00 0.00 0.00 3.33
385 386 4.112634 TCTTCAAAACTAGCCCCATGTT 57.887 40.909 0.00 0.00 0.00 2.71
386 387 3.806949 TCTTCAAAACTAGCCCCATGT 57.193 42.857 0.00 0.00 0.00 3.21
387 388 4.530875 AGATCTTCAAAACTAGCCCCATG 58.469 43.478 0.00 0.00 0.00 3.66
388 389 4.684485 CGAGATCTTCAAAACTAGCCCCAT 60.684 45.833 0.00 0.00 0.00 4.00
389 390 3.369471 CGAGATCTTCAAAACTAGCCCCA 60.369 47.826 0.00 0.00 0.00 4.96
390 391 3.198872 CGAGATCTTCAAAACTAGCCCC 58.801 50.000 0.00 0.00 0.00 5.80
391 392 3.863041 ACGAGATCTTCAAAACTAGCCC 58.137 45.455 0.00 0.00 0.00 5.19
392 393 4.929808 TCAACGAGATCTTCAAAACTAGCC 59.070 41.667 0.00 0.00 0.00 3.93
393 394 5.864474 TCTCAACGAGATCTTCAAAACTAGC 59.136 40.000 0.00 0.00 33.35 3.42
394 395 7.271936 GTCTCAACGAGATCTTCAAAACTAG 57.728 40.000 0.00 0.00 40.98 2.57
411 412 5.873179 TTCACCATTAAATCCGTCTCAAC 57.127 39.130 0.00 0.00 0.00 3.18
412 413 6.566942 CGTTTTCACCATTAAATCCGTCTCAA 60.567 38.462 0.00 0.00 0.00 3.02
413 414 5.106869 CGTTTTCACCATTAAATCCGTCTCA 60.107 40.000 0.00 0.00 0.00 3.27
414 415 5.321516 CGTTTTCACCATTAAATCCGTCTC 58.678 41.667 0.00 0.00 0.00 3.36
415 416 4.155280 CCGTTTTCACCATTAAATCCGTCT 59.845 41.667 0.00 0.00 0.00 4.18
416 417 4.154556 TCCGTTTTCACCATTAAATCCGTC 59.845 41.667 0.00 0.00 0.00 4.79
417 418 4.073549 TCCGTTTTCACCATTAAATCCGT 58.926 39.130 0.00 0.00 0.00 4.69
418 419 4.688511 TCCGTTTTCACCATTAAATCCG 57.311 40.909 0.00 0.00 0.00 4.18
419 420 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
425 426 8.073167 GCAAATTAAAAATCCGTTTTCACCATT 58.927 29.630 0.00 0.00 40.07 3.16
426 427 7.443879 AGCAAATTAAAAATCCGTTTTCACCAT 59.556 29.630 0.00 0.00 40.07 3.55
427 428 6.763610 AGCAAATTAAAAATCCGTTTTCACCA 59.236 30.769 0.00 0.00 40.07 4.17
428 429 7.184800 AGCAAATTAAAAATCCGTTTTCACC 57.815 32.000 0.00 0.00 40.07 4.02
429 430 9.497030 AAAAGCAAATTAAAAATCCGTTTTCAC 57.503 25.926 0.00 0.00 40.07 3.18
430 431 9.709600 GAAAAGCAAATTAAAAATCCGTTTTCA 57.290 25.926 0.00 0.00 40.07 2.69
431 432 9.709600 TGAAAAGCAAATTAAAAATCCGTTTTC 57.290 25.926 0.00 0.00 40.07 2.29
461 462 9.974980 TTTCGGCTTAAAAATGTTTTATCTTCT 57.025 25.926 0.00 0.00 0.00 2.85
464 465 8.984764 GGTTTTCGGCTTAAAAATGTTTTATCT 58.015 29.630 0.00 0.00 30.53 1.98
465 466 8.766151 TGGTTTTCGGCTTAAAAATGTTTTATC 58.234 29.630 0.00 0.00 30.53 1.75
466 467 8.664211 TGGTTTTCGGCTTAAAAATGTTTTAT 57.336 26.923 0.00 0.00 30.53 1.40
467 468 8.488651 TTGGTTTTCGGCTTAAAAATGTTTTA 57.511 26.923 0.00 0.00 30.53 1.52
468 469 6.986904 TGGTTTTCGGCTTAAAAATGTTTT 57.013 29.167 0.00 0.00 30.53 2.43
469 470 6.986904 TTGGTTTTCGGCTTAAAAATGTTT 57.013 29.167 0.00 0.00 30.53 2.83
470 471 6.986904 TTTGGTTTTCGGCTTAAAAATGTT 57.013 29.167 0.00 0.00 30.53 2.71
471 472 6.986904 TTTTGGTTTTCGGCTTAAAAATGT 57.013 29.167 0.00 0.00 30.53 2.71
499 500 9.981114 ACGTATGAATAGATGACATCAACATAA 57.019 29.630 17.57 0.00 0.00 1.90
500 501 9.410556 CACGTATGAATAGATGACATCAACATA 57.589 33.333 17.57 15.40 0.00 2.29
501 502 7.386025 CCACGTATGAATAGATGACATCAACAT 59.614 37.037 17.57 16.21 0.00 2.71
502 503 6.701400 CCACGTATGAATAGATGACATCAACA 59.299 38.462 17.57 11.11 0.00 3.33
503 504 6.346919 GCCACGTATGAATAGATGACATCAAC 60.347 42.308 17.57 6.29 0.00 3.18
504 505 5.696270 GCCACGTATGAATAGATGACATCAA 59.304 40.000 17.57 0.00 0.00 2.57
505 506 5.221422 TGCCACGTATGAATAGATGACATCA 60.221 40.000 17.57 4.35 0.00 3.07
506 507 5.230182 TGCCACGTATGAATAGATGACATC 58.770 41.667 7.39 7.39 0.00 3.06
507 508 5.213891 TGCCACGTATGAATAGATGACAT 57.786 39.130 0.00 0.00 0.00 3.06
508 509 4.664150 TGCCACGTATGAATAGATGACA 57.336 40.909 0.00 0.00 0.00 3.58
509 510 5.984233 TTTGCCACGTATGAATAGATGAC 57.016 39.130 0.00 0.00 0.00 3.06
510 511 6.017192 CCATTTTGCCACGTATGAATAGATGA 60.017 38.462 0.00 0.00 0.00 2.92
511 512 6.144854 CCATTTTGCCACGTATGAATAGATG 58.855 40.000 0.00 0.00 0.00 2.90
512 513 5.241506 CCCATTTTGCCACGTATGAATAGAT 59.758 40.000 0.00 0.00 0.00 1.98
513 514 4.578516 CCCATTTTGCCACGTATGAATAGA 59.421 41.667 0.00 0.00 0.00 1.98
514 515 4.338118 ACCCATTTTGCCACGTATGAATAG 59.662 41.667 0.00 0.00 0.00 1.73
515 516 4.097135 CACCCATTTTGCCACGTATGAATA 59.903 41.667 0.00 0.00 0.00 1.75
516 517 3.096092 ACCCATTTTGCCACGTATGAAT 58.904 40.909 0.00 0.00 0.00 2.57
517 518 2.230025 CACCCATTTTGCCACGTATGAA 59.770 45.455 0.00 0.00 0.00 2.57
518 519 1.815613 CACCCATTTTGCCACGTATGA 59.184 47.619 0.00 0.00 0.00 2.15
519 520 1.815613 TCACCCATTTTGCCACGTATG 59.184 47.619 0.00 0.00 0.00 2.39
520 521 2.208132 TCACCCATTTTGCCACGTAT 57.792 45.000 0.00 0.00 0.00 3.06
521 522 1.815613 CATCACCCATTTTGCCACGTA 59.184 47.619 0.00 0.00 0.00 3.57
522 523 0.602562 CATCACCCATTTTGCCACGT 59.397 50.000 0.00 0.00 0.00 4.49
523 524 0.887247 TCATCACCCATTTTGCCACG 59.113 50.000 0.00 0.00 0.00 4.94
524 525 2.419021 CCATCATCACCCATTTTGCCAC 60.419 50.000 0.00 0.00 0.00 5.01
525 526 1.832366 CCATCATCACCCATTTTGCCA 59.168 47.619 0.00 0.00 0.00 4.92
526 527 2.101917 CTCCATCATCACCCATTTTGCC 59.898 50.000 0.00 0.00 0.00 4.52
527 528 2.101917 CCTCCATCATCACCCATTTTGC 59.898 50.000 0.00 0.00 0.00 3.68
528 529 2.101917 GCCTCCATCATCACCCATTTTG 59.898 50.000 0.00 0.00 0.00 2.44
529 530 2.391678 GCCTCCATCATCACCCATTTT 58.608 47.619 0.00 0.00 0.00 1.82
530 531 1.751733 CGCCTCCATCATCACCCATTT 60.752 52.381 0.00 0.00 0.00 2.32
531 532 0.179009 CGCCTCCATCATCACCCATT 60.179 55.000 0.00 0.00 0.00 3.16
532 533 1.348008 ACGCCTCCATCATCACCCAT 61.348 55.000 0.00 0.00 0.00 4.00
533 534 1.995066 ACGCCTCCATCATCACCCA 60.995 57.895 0.00 0.00 0.00 4.51
534 535 1.524621 CACGCCTCCATCATCACCC 60.525 63.158 0.00 0.00 0.00 4.61
535 536 1.091771 CACACGCCTCCATCATCACC 61.092 60.000 0.00 0.00 0.00 4.02
536 537 1.091771 CCACACGCCTCCATCATCAC 61.092 60.000 0.00 0.00 0.00 3.06
537 538 1.221566 CCACACGCCTCCATCATCA 59.778 57.895 0.00 0.00 0.00 3.07
538 539 1.524621 CCCACACGCCTCCATCATC 60.525 63.158 0.00 0.00 0.00 2.92
539 540 2.591753 CCCACACGCCTCCATCAT 59.408 61.111 0.00 0.00 0.00 2.45
540 541 4.408821 GCCCACACGCCTCCATCA 62.409 66.667 0.00 0.00 0.00 3.07
545 546 3.365291 TACATCGCCCACACGCCTC 62.365 63.158 0.00 0.00 0.00 4.70
546 547 3.387091 TACATCGCCCACACGCCT 61.387 61.111 0.00 0.00 0.00 5.52
547 548 3.192922 GTACATCGCCCACACGCC 61.193 66.667 0.00 0.00 0.00 5.68
548 549 1.570347 TTTGTACATCGCCCACACGC 61.570 55.000 0.00 0.00 0.00 5.34
549 550 0.165079 GTTTGTACATCGCCCACACG 59.835 55.000 0.00 0.00 0.00 4.49
550 551 0.519961 GGTTTGTACATCGCCCACAC 59.480 55.000 0.00 0.00 0.00 3.82
551 552 0.606944 GGGTTTGTACATCGCCCACA 60.607 55.000 19.17 0.00 39.13 4.17
552 553 1.310216 GGGGTTTGTACATCGCCCAC 61.310 60.000 23.05 13.44 41.02 4.61
553 554 1.001887 GGGGTTTGTACATCGCCCA 60.002 57.895 23.05 0.00 41.02 5.36
554 555 1.001887 TGGGGTTTGTACATCGCCC 60.002 57.895 22.38 19.87 38.61 6.13
555 556 1.310216 GGTGGGGTTTGTACATCGCC 61.310 60.000 20.14 20.14 35.26 5.54
556 557 1.310216 GGGTGGGGTTTGTACATCGC 61.310 60.000 0.00 1.79 0.00 4.58
557 558 0.037017 TGGGTGGGGTTTGTACATCG 59.963 55.000 0.00 0.00 0.00 3.84
558 559 2.296073 TTGGGTGGGGTTTGTACATC 57.704 50.000 0.00 0.00 0.00 3.06
559 560 2.777459 TTTGGGTGGGGTTTGTACAT 57.223 45.000 0.00 0.00 0.00 2.29
560 561 2.178106 AGATTTGGGTGGGGTTTGTACA 59.822 45.455 0.00 0.00 0.00 2.90
561 562 2.884320 AGATTTGGGTGGGGTTTGTAC 58.116 47.619 0.00 0.00 0.00 2.90
562 563 3.621682 AAGATTTGGGTGGGGTTTGTA 57.378 42.857 0.00 0.00 0.00 2.41
563 564 2.487746 AAGATTTGGGTGGGGTTTGT 57.512 45.000 0.00 0.00 0.00 2.83
564 565 3.855255 AAAAGATTTGGGTGGGGTTTG 57.145 42.857 0.00 0.00 0.00 2.93
565 566 3.137544 GGAAAAAGATTTGGGTGGGGTTT 59.862 43.478 0.00 0.00 0.00 3.27
566 567 2.708861 GGAAAAAGATTTGGGTGGGGTT 59.291 45.455 0.00 0.00 0.00 4.11
567 568 2.334977 GGAAAAAGATTTGGGTGGGGT 58.665 47.619 0.00 0.00 0.00 4.95
568 569 2.334023 TGGAAAAAGATTTGGGTGGGG 58.666 47.619 0.00 0.00 0.00 4.96
569 570 4.639078 AATGGAAAAAGATTTGGGTGGG 57.361 40.909 0.00 0.00 0.00 4.61
570 571 8.634335 AAAATAATGGAAAAAGATTTGGGTGG 57.366 30.769 0.00 0.00 0.00 4.61
627 628 3.140814 GGGGTTGGGAAGATGCGC 61.141 66.667 0.00 0.00 0.00 6.09
629 630 1.682344 GTGGGGGTTGGGAAGATGC 60.682 63.158 0.00 0.00 0.00 3.91
645 646 3.057806 GTCGTATTCAGGGTTTTTGGGTG 60.058 47.826 0.00 0.00 0.00 4.61
688 689 3.482786 CTCGGATTTTTCTGTTTCTGCG 58.517 45.455 0.00 0.00 0.00 5.18
706 707 4.457496 ATGGGCCGTCAGTGCTCG 62.457 66.667 0.00 0.00 29.42 5.03
707 708 2.821366 CATGGGCCGTCAGTGCTC 60.821 66.667 0.00 0.00 0.00 4.26
736 737 1.404851 GGAGCTCGTGAAGAAAGAGGG 60.405 57.143 7.83 0.00 35.18 4.30
780 781 4.547367 CGGGGATGCGGAGGGAAC 62.547 72.222 0.00 0.00 0.00 3.62
799 800 4.243008 TTGCCTTGTGACGCCCGA 62.243 61.111 0.00 0.00 0.00 5.14
870 871 1.781786 TGGTGGGCTGCTTTTGTTTA 58.218 45.000 0.00 0.00 0.00 2.01
895 905 2.351418 GCCTTGCTTGGTTTGTTGTTTC 59.649 45.455 0.00 0.00 0.00 2.78
1061 1076 4.196826 GCAGCGTGACGATGTCGC 62.197 66.667 24.35 6.70 45.34 5.19
1062 1077 2.804931 TGCAGCGTGACGATGTCG 60.805 61.111 24.35 0.00 45.34 4.35
1063 1078 1.556591 TTGTGCAGCGTGACGATGTC 61.557 55.000 24.35 16.46 45.34 3.06
1064 1079 1.560004 CTTGTGCAGCGTGACGATGT 61.560 55.000 24.35 0.00 45.34 3.06
1065 1080 1.131218 CTTGTGCAGCGTGACGATG 59.869 57.895 19.77 19.77 46.35 3.84
1066 1081 2.029288 CCTTGTGCAGCGTGACGAT 61.029 57.895 10.10 0.00 0.00 3.73
1067 1082 2.661537 CCTTGTGCAGCGTGACGA 60.662 61.111 10.10 0.00 0.00 4.20
1068 1083 4.374702 GCCTTGTGCAGCGTGACG 62.375 66.667 0.00 0.00 40.77 4.35
1069 1084 4.030452 GGCCTTGTGCAGCGTGAC 62.030 66.667 0.00 0.00 43.89 3.67
1073 1088 4.711949 AGAGGGCCTTGTGCAGCG 62.712 66.667 7.89 0.00 43.89 5.18
1074 1089 2.749441 GAGAGGGCCTTGTGCAGC 60.749 66.667 7.89 0.00 43.89 5.25
1075 1090 2.045536 GGAGAGGGCCTTGTGCAG 60.046 66.667 7.89 0.00 43.89 4.41
1076 1091 3.650950 GGGAGAGGGCCTTGTGCA 61.651 66.667 7.89 0.00 43.89 4.57
1077 1092 3.334054 AGGGAGAGGGCCTTGTGC 61.334 66.667 7.89 3.27 40.16 4.57
1078 1093 2.993853 GAGGGAGAGGGCCTTGTG 59.006 66.667 7.89 0.00 0.00 3.33
1079 1094 2.685380 CGAGGGAGAGGGCCTTGT 60.685 66.667 7.89 0.00 0.00 3.16
1080 1095 2.364317 TCGAGGGAGAGGGCCTTG 60.364 66.667 7.89 0.00 0.00 3.61
1081 1096 2.364448 GTCGAGGGAGAGGGCCTT 60.364 66.667 7.89 0.00 0.00 4.35
1082 1097 4.467107 GGTCGAGGGAGAGGGCCT 62.467 72.222 5.25 5.25 0.00 5.19
1131 1445 2.281345 GATGGAGATGGGGCAGCG 60.281 66.667 0.00 0.00 0.00 5.18
1132 1446 1.228184 CAGATGGAGATGGGGCAGC 60.228 63.158 0.00 0.00 0.00 5.25
1133 1447 1.228184 GCAGATGGAGATGGGGCAG 60.228 63.158 0.00 0.00 0.00 4.85
1378 1710 2.126031 GCGGAAGTGGACGGAGAC 60.126 66.667 0.00 0.00 0.00 3.36
2043 2375 2.422479 CACATTGAACTCTGAGCCATGG 59.578 50.000 7.63 7.63 0.00 3.66
2049 2381 3.188048 GCTCAACCACATTGAACTCTGAG 59.812 47.826 2.45 2.45 46.80 3.35
2106 2438 2.744202 GGCAGTCTCGACATGTTTGAAT 59.256 45.455 0.00 0.00 0.00 2.57
2180 2512 3.924114 TTAGTAATGCAGGCTTGGCTA 57.076 42.857 0.00 0.00 0.00 3.93
2181 2513 2.806945 TTAGTAATGCAGGCTTGGCT 57.193 45.000 0.00 0.00 0.00 4.75
2205 2537 7.123697 TCAACGGTATCCTCTTTAGAAAGATCA 59.876 37.037 5.21 0.00 43.52 2.92
2212 2544 5.713389 TCACTTCAACGGTATCCTCTTTAGA 59.287 40.000 0.00 0.00 0.00 2.10
2223 2555 1.610038 TCGAGCTTCACTTCAACGGTA 59.390 47.619 0.00 0.00 0.00 4.02
2226 2558 2.394708 TCTTCGAGCTTCACTTCAACG 58.605 47.619 0.00 0.00 0.00 4.10
2239 2571 1.458398 TCACTGAGCTCCTCTTCGAG 58.542 55.000 12.15 2.07 0.00 4.04
2241 2573 1.476085 ACATCACTGAGCTCCTCTTCG 59.524 52.381 12.15 0.00 0.00 3.79
2328 2660 4.278170 TCACCATCTTTTTCAAATGCGTCT 59.722 37.500 0.00 0.00 0.00 4.18
2330 2662 4.037923 ACTCACCATCTTTTTCAAATGCGT 59.962 37.500 0.00 0.00 0.00 5.24
2358 2690 4.861196 AGACCTCTAGTTCTGTATCTGCA 58.139 43.478 0.00 0.00 0.00 4.41
2373 2705 5.157770 TGAATATACCCTCCAAGACCTCT 57.842 43.478 0.00 0.00 0.00 3.69
2379 2711 8.525290 AGAATTTGTTGAATATACCCTCCAAG 57.475 34.615 0.00 0.00 0.00 3.61
2380 2712 8.112822 TGAGAATTTGTTGAATATACCCTCCAA 58.887 33.333 0.00 0.00 0.00 3.53
2415 2747 2.711009 TGGTGAGTCAAATTCCTCTGGT 59.289 45.455 0.00 0.00 0.00 4.00
2440 2772 5.265191 TCGCCTAGAATGCTTATCCTCTAT 58.735 41.667 0.00 0.00 0.00 1.98
2500 2832 4.200874 CGTGATCTACTCTTCCTACTGGT 58.799 47.826 0.00 0.00 34.23 4.00
2510 2842 1.068281 CCATGCTGCGTGATCTACTCT 59.932 52.381 22.79 0.00 0.00 3.24
2514 2846 2.159327 CATCCATGCTGCGTGATCTA 57.841 50.000 22.79 6.09 0.00 1.98
2538 2870 8.579682 AAAACTCATTAGCAACAAAATCAGAC 57.420 30.769 0.00 0.00 0.00 3.51
2619 2951 1.882989 GCCGCTCTCTTGGTGACTCT 61.883 60.000 0.00 0.00 0.00 3.24
2667 2999 4.455606 CAAGAATACAGTCCCCAGATTCC 58.544 47.826 0.00 0.00 0.00 3.01
2695 3027 5.165961 TCTTCCACTCCATCTTCGAAATT 57.834 39.130 0.00 0.00 0.00 1.82
2708 3040 4.602340 TCACAACTAGGTTCTTCCACTC 57.398 45.455 0.00 0.00 39.02 3.51
2709 3041 4.654262 TCTTCACAACTAGGTTCTTCCACT 59.346 41.667 0.00 0.00 39.02 4.00
2736 3068 2.606795 GGAGAGATCGAAATCCTCTGCG 60.607 54.545 12.59 0.00 33.34 5.18
2802 3134 4.441634 GCTCTAAATGTGGTGTCTATCGGT 60.442 45.833 0.00 0.00 0.00 4.69
2805 3137 5.023533 TGGCTCTAAATGTGGTGTCTATC 57.976 43.478 0.00 0.00 0.00 2.08
3282 3614 5.620206 TGAACAAGCAGGACAAGAAAGATA 58.380 37.500 0.00 0.00 0.00 1.98
3309 3641 9.859427 CCAAGCAAATGATGAAGTATTAAGAAA 57.141 29.630 0.00 0.00 0.00 2.52
3444 3780 0.813821 TGACAGATCAGCACCTCTCG 59.186 55.000 0.00 0.00 0.00 4.04
3793 4132 3.244561 TGAACTGTTCCTCTTCATCCACC 60.245 47.826 17.26 0.00 0.00 4.61
3808 4147 2.351447 CGATGTACGGTCACTGAACTGT 60.351 50.000 0.00 5.15 41.56 3.55
3883 4222 2.360165 CCTGCTCTTTTTGTCTGCAGTT 59.640 45.455 14.67 0.00 46.60 3.16
3973 4312 1.605710 GGCTCATAGTTACGTAGCGGA 59.394 52.381 3.64 3.09 33.96 5.54
3994 4333 1.805428 AAAGCATCGGTGTGCCAACC 61.805 55.000 0.00 0.00 46.19 3.77
4070 4409 5.178438 GCTCACTGTTACCTTTCTCTGAAAG 59.822 44.000 11.76 11.76 0.00 2.62
4164 4506 0.110486 TTGGGGAACAGAGTCTTGCC 59.890 55.000 0.00 0.00 0.00 4.52
4166 4508 6.265422 ACTTTAAATTGGGGAACAGAGTCTTG 59.735 38.462 0.00 0.00 0.00 3.02
4201 4543 2.039879 ACTCTTAAAACCGGCCAGATGT 59.960 45.455 0.00 0.00 0.00 3.06
4205 4547 2.076863 CTCACTCTTAAAACCGGCCAG 58.923 52.381 0.00 0.00 0.00 4.85
4240 4582 0.524414 GTGTTTGATTACCCCACGGC 59.476 55.000 0.00 0.00 0.00 5.68
4303 4645 0.969409 GAGGATGCTTGCTGCCCTTT 60.969 55.000 0.00 0.00 42.00 3.11
4327 4669 0.671251 TTGCGGTGGCTTTCGATTTT 59.329 45.000 0.00 0.00 40.82 1.82
4342 4684 1.082104 GTCTTTCGTGGCCTTTGCG 60.082 57.895 3.32 3.64 38.85 4.85
4564 4907 0.250124 TTACACAGGCGAACCACCAG 60.250 55.000 0.00 0.00 39.06 4.00
4565 4908 0.533308 GTTACACAGGCGAACCACCA 60.533 55.000 0.00 0.00 39.06 4.17
4595 4938 7.116736 GGGAGGAGTAGGAACATTAATTTCAA 58.883 38.462 10.50 0.00 0.00 2.69
4640 4984 3.986572 CCAAATTAATTGACGCACAAGCA 59.013 39.130 0.39 0.00 41.85 3.91
4723 5068 1.668101 GCTGGTCCGAGACGATTCCT 61.668 60.000 0.00 0.00 32.65 3.36
4736 5081 2.755103 CACATAAGAAAAGGGGCTGGTC 59.245 50.000 0.00 0.00 0.00 4.02
4801 5147 7.014711 AGGGGAGCTCTAAAAAGAAAAGAAAAG 59.985 37.037 14.64 0.00 0.00 2.27
4856 8139 1.021968 GTACAATTAAGCGCAGGGGG 58.978 55.000 11.47 0.00 0.00 5.40
4876 8159 5.984695 TTGACATTGTACACTAGCTCTCT 57.015 39.130 0.00 0.00 0.00 3.10
4933 8217 4.868171 TCAGTCACACTACACAACAAAGAC 59.132 41.667 0.00 0.00 0.00 3.01
4934 8218 5.079689 TCAGTCACACTACACAACAAAGA 57.920 39.130 0.00 0.00 0.00 2.52
4935 8219 5.727791 GCTTCAGTCACACTACACAACAAAG 60.728 44.000 0.00 0.00 0.00 2.77
4936 8220 4.094294 GCTTCAGTCACACTACACAACAAA 59.906 41.667 0.00 0.00 0.00 2.83
4941 8225 2.430694 ACAGCTTCAGTCACACTACACA 59.569 45.455 0.00 0.00 0.00 3.72
4987 8275 5.406477 TGATCGATGACAGACAGAACAAAAG 59.594 40.000 0.54 0.00 0.00 2.27
5058 8346 5.084818 TCCATGAACATGACAATACGTCT 57.915 39.130 15.21 0.00 45.60 4.18
5059 8347 4.260375 GCTCCATGAACATGACAATACGTC 60.260 45.833 15.21 0.00 45.61 4.34
5060 8348 3.623060 GCTCCATGAACATGACAATACGT 59.377 43.478 15.21 0.00 41.20 3.57
5061 8349 3.622612 TGCTCCATGAACATGACAATACG 59.377 43.478 15.21 0.00 41.20 3.06
5062 8350 5.762825 ATGCTCCATGAACATGACAATAC 57.237 39.130 15.21 1.35 41.20 1.89
5063 8351 5.887035 TCAATGCTCCATGAACATGACAATA 59.113 36.000 15.21 0.31 41.20 1.90
5111 8399 2.364972 ACACTAGGCCAAAACTTGCT 57.635 45.000 5.01 0.00 0.00 3.91
5112 8400 2.288213 GGAACACTAGGCCAAAACTTGC 60.288 50.000 5.01 0.00 0.00 4.01
5170 8657 1.662629 CGCTGCTAAATGACCAGTCTG 59.337 52.381 0.00 0.00 0.00 3.51
5175 8662 2.323968 TATGCGCTGCTAAATGACCA 57.676 45.000 9.73 0.00 0.00 4.02
5303 8792 2.864114 CCTGAGCAAGGTGTCATGG 58.136 57.895 0.00 0.00 41.74 3.66
5313 8802 1.374631 CACGCTACAGCCTGAGCAA 60.375 57.895 13.87 0.00 43.56 3.91
5353 8857 0.693049 AGCTTTTGAGGTCGTGGGAT 59.307 50.000 0.00 0.00 0.00 3.85
5408 8912 3.804786 TCCGTAAACAAGGCGATCATA 57.195 42.857 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.