Multiple sequence alignment - TraesCS3D01G246600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G246600 chr3D 100.000 3032 0 0 1 3032 345525696 345528727 0.000000e+00 5600.0
1 TraesCS3D01G246600 chr3D 79.787 188 30 7 2667 2853 345527873 345528053 2.450000e-26 130.0
2 TraesCS3D01G246600 chr3D 79.787 188 30 7 2178 2358 345528362 345528548 2.450000e-26 130.0
3 TraesCS3D01G246600 chr3D 92.135 89 2 3 1894 1978 607308439 607308352 1.480000e-23 121.0
4 TraesCS3D01G246600 chr3B 92.423 1399 75 19 716 2094 444682592 444683979 0.000000e+00 1967.0
5 TraesCS3D01G246600 chr3B 87.896 537 51 6 2206 2731 444687251 444687784 1.190000e-173 619.0
6 TraesCS3D01G246600 chr3B 87.407 270 22 8 2761 3029 444688366 444688624 1.770000e-77 300.0
7 TraesCS3D01G246600 chr3B 93.902 82 3 1 1899 1978 816690173 816690092 4.110000e-24 122.0
8 TraesCS3D01G246600 chr3A 93.631 895 27 7 716 1589 457932132 457931247 0.000000e+00 1310.0
9 TraesCS3D01G246600 chr3A 86.724 693 76 8 2349 3032 457907509 457906824 0.000000e+00 756.0
10 TraesCS3D01G246600 chr3A 88.344 489 33 16 1581 2062 457924735 457924264 1.580000e-157 566.0
11 TraesCS3D01G246600 chr3A 78.325 203 31 9 2178 2370 457907189 457906990 5.310000e-23 119.0
12 TraesCS3D01G246600 chr1A 89.627 241 25 0 366 606 220250769 220251009 1.060000e-79 307.0
13 TraesCS3D01G246600 chr2A 89.388 245 22 4 366 608 183539251 183539493 3.800000e-79 305.0
14 TraesCS3D01G246600 chr2A 90.426 94 2 5 1889 1978 65404014 65403924 1.910000e-22 117.0
15 TraesCS3D01G246600 chr1B 88.980 245 27 0 366 610 411392303 411392547 1.370000e-78 303.0
16 TraesCS3D01G246600 chr1B 89.256 242 25 1 366 606 323935586 323935827 4.910000e-78 302.0
17 TraesCS3D01G246600 chr5B 89.256 242 24 2 366 606 440289314 440289074 4.910000e-78 302.0
18 TraesCS3D01G246600 chr5B 91.089 101 8 1 608 707 294542651 294542751 5.270000e-28 135.0
19 TraesCS3D01G246600 chr2D 89.212 241 26 0 366 606 83172234 83172474 4.910000e-78 302.0
20 TraesCS3D01G246600 chr2D 84.177 316 39 7 1 316 53198723 53199027 2.290000e-76 296.0
21 TraesCS3D01G246600 chr5D 88.934 244 26 1 366 609 538172973 538173215 1.770000e-77 300.0
22 TraesCS3D01G246600 chr4B 88.353 249 29 0 366 614 418491055 418491303 1.770000e-77 300.0
23 TraesCS3D01G246600 chr4B 88.353 249 29 0 366 614 566708961 566708713 1.770000e-77 300.0
24 TraesCS3D01G246600 chr4A 93.750 80 4 1 1899 1978 656817004 656817082 5.310000e-23 119.0
25 TraesCS3D01G246600 chr2B 91.860 86 4 2 1899 1982 99959759 99959675 1.910000e-22 117.0
26 TraesCS3D01G246600 chr2B 91.011 89 3 3 1893 1978 99961303 99961217 6.870000e-22 115.0
27 TraesCS3D01G246600 chr2B 100.000 29 0 0 2425 2453 585753468 585753496 2.000000e-03 54.7
28 TraesCS3D01G246600 chr6B 90.805 87 6 2 1899 1984 216506010 216505925 6.870000e-22 115.0
29 TraesCS3D01G246600 chrUn 89.796 49 1 3 2406 2453 136329196 136329241 3.260000e-05 60.2
30 TraesCS3D01G246600 chrUn 94.444 36 1 1 2422 2457 287694831 287694797 2.000000e-03 54.7
31 TraesCS3D01G246600 chrUn 94.444 36 1 1 2422 2457 287707035 287707001 2.000000e-03 54.7
32 TraesCS3D01G246600 chrUn 94.444 36 1 1 2422 2457 294703048 294703014 2.000000e-03 54.7
33 TraesCS3D01G246600 chr7D 100.000 31 0 0 2423 2453 135974712 135974682 1.170000e-04 58.4
34 TraesCS3D01G246600 chr7B 100.000 29 0 0 2425 2453 84110393 84110365 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G246600 chr3D 345525696 345528727 3031 False 1953.333333 5600 86.524667 1 3032 3 chr3D.!!$F1 3031
1 TraesCS3D01G246600 chr3B 444682592 444688624 6032 False 962.000000 1967 89.242000 716 3029 3 chr3B.!!$F1 2313
2 TraesCS3D01G246600 chr3A 457931247 457932132 885 True 1310.000000 1310 93.631000 716 1589 1 chr3A.!!$R2 873
3 TraesCS3D01G246600 chr3A 457906824 457907509 685 True 437.500000 756 82.524500 2178 3032 2 chr3A.!!$R3 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 741 0.031178 CACAAGTTTCACCTGCAGCC 59.969 55.0 8.66 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 5746 0.318762 AAAGACGAGGAGAAAGCGCT 59.681 50.0 2.64 2.64 0.0 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.570663 CCGTCCGTCCGGCAGATC 62.571 72.222 0.00 0.00 41.78 2.75
19 20 3.518998 CGTCCGTCCGGCAGATCT 61.519 66.667 0.00 0.00 34.68 2.75
20 21 2.413765 GTCCGTCCGGCAGATCTC 59.586 66.667 0.00 0.00 34.68 2.75
21 22 3.209812 TCCGTCCGGCAGATCTCG 61.210 66.667 0.00 0.00 34.68 4.04
22 23 4.271816 CCGTCCGGCAGATCTCGG 62.272 72.222 15.06 15.06 46.89 4.63
27 28 4.637489 CGGCAGATCTCGGAGCGG 62.637 72.222 0.00 0.00 0.00 5.52
28 29 3.219928 GGCAGATCTCGGAGCGGA 61.220 66.667 0.00 0.00 0.00 5.54
29 30 2.334653 GCAGATCTCGGAGCGGAG 59.665 66.667 0.00 0.00 35.32 4.63
101 102 4.899239 GGAGGAGGGCGACGCATG 62.899 72.222 23.09 0.00 0.00 4.06
162 163 3.854669 CAGAGGGCCTGCCGGTAG 61.855 72.222 12.95 13.36 35.89 3.18
167 168 3.712907 GGCCTGCCGGTAGGACAA 61.713 66.667 39.38 0.00 45.76 3.18
168 169 2.125106 GCCTGCCGGTAGGACAAG 60.125 66.667 39.38 15.17 40.42 3.16
169 170 2.584608 CCTGCCGGTAGGACAAGG 59.415 66.667 33.15 5.71 40.42 3.61
172 173 4.832608 GCCGGTAGGACAAGGCCG 62.833 72.222 1.90 0.00 43.54 6.13
173 174 3.072468 CCGGTAGGACAAGGCCGA 61.072 66.667 0.00 0.00 46.33 5.54
174 175 2.494918 CGGTAGGACAAGGCCGAG 59.505 66.667 0.00 0.00 46.33 4.63
175 176 2.348888 CGGTAGGACAAGGCCGAGT 61.349 63.158 0.00 0.00 46.33 4.18
176 177 1.885163 CGGTAGGACAAGGCCGAGTT 61.885 60.000 0.00 0.00 46.33 3.01
177 178 0.108281 GGTAGGACAAGGCCGAGTTC 60.108 60.000 0.00 0.00 0.00 3.01
178 179 0.458025 GTAGGACAAGGCCGAGTTCG 60.458 60.000 0.00 0.00 39.44 3.95
179 180 2.221906 TAGGACAAGGCCGAGTTCGC 62.222 60.000 0.00 0.00 38.18 4.70
180 181 3.479269 GACAAGGCCGAGTTCGCG 61.479 66.667 0.00 0.00 38.18 5.87
204 205 3.151022 CCTGAGGAGGGGCTCGAC 61.151 72.222 0.00 0.00 35.40 4.20
205 206 2.043450 CTGAGGAGGGGCTCGACT 60.043 66.667 0.00 0.00 0.00 4.18
206 207 2.043852 TGAGGAGGGGCTCGACTC 60.044 66.667 4.66 4.66 0.00 3.36
210 211 3.844090 GAGGGGCTCGACTCCAGC 61.844 72.222 6.67 0.00 36.02 4.85
215 216 2.493973 GCTCGACTCCAGCCAGAG 59.506 66.667 0.00 0.00 39.91 3.35
216 217 2.049185 GCTCGACTCCAGCCAGAGA 61.049 63.158 7.56 0.00 37.33 3.10
217 218 1.599606 GCTCGACTCCAGCCAGAGAA 61.600 60.000 7.56 0.00 37.33 2.87
218 219 0.455410 CTCGACTCCAGCCAGAGAAG 59.545 60.000 7.56 1.71 37.33 2.85
219 220 1.153667 CGACTCCAGCCAGAGAAGC 60.154 63.158 7.56 0.00 37.33 3.86
220 221 1.603236 CGACTCCAGCCAGAGAAGCT 61.603 60.000 7.56 0.00 42.70 3.74
221 222 0.175531 GACTCCAGCCAGAGAAGCTC 59.824 60.000 7.56 0.00 38.95 4.09
222 223 1.141449 CTCCAGCCAGAGAAGCTCG 59.859 63.158 0.00 0.00 38.95 5.03
223 224 2.511145 CCAGCCAGAGAAGCTCGC 60.511 66.667 0.00 0.00 38.95 5.03
224 225 2.884685 CAGCCAGAGAAGCTCGCG 60.885 66.667 0.00 0.00 38.95 5.87
225 226 3.064945 AGCCAGAGAAGCTCGCGA 61.065 61.111 9.26 9.26 34.91 5.87
226 227 2.581953 GCCAGAGAAGCTCGCGAG 60.582 66.667 31.37 31.37 35.36 5.03
227 228 3.057547 GCCAGAGAAGCTCGCGAGA 62.058 63.158 38.74 3.22 35.36 4.04
265 266 4.247380 GCGAGGAGGCCATGGAGG 62.247 72.222 18.40 0.00 41.84 4.30
266 267 3.554342 CGAGGAGGCCATGGAGGG 61.554 72.222 18.40 0.00 38.09 4.30
267 268 2.367512 GAGGAGGCCATGGAGGGT 60.368 66.667 18.40 0.00 38.09 4.34
268 269 2.693864 AGGAGGCCATGGAGGGTG 60.694 66.667 18.40 0.00 38.09 4.61
269 270 3.813724 GGAGGCCATGGAGGGTGG 61.814 72.222 18.40 0.00 39.80 4.61
270 271 2.692368 GAGGCCATGGAGGGTGGA 60.692 66.667 18.40 0.00 39.12 4.02
271 272 3.017581 AGGCCATGGAGGGTGGAC 61.018 66.667 18.40 0.00 45.58 4.02
272 273 4.489771 GGCCATGGAGGGTGGACG 62.490 72.222 18.40 0.00 39.12 4.79
273 274 4.489771 GCCATGGAGGGTGGACGG 62.490 72.222 18.40 0.00 39.12 4.79
274 275 3.009115 CCATGGAGGGTGGACGGT 61.009 66.667 5.56 0.00 39.12 4.83
275 276 2.268920 CATGGAGGGTGGACGGTG 59.731 66.667 0.00 0.00 0.00 4.94
276 277 3.009115 ATGGAGGGTGGACGGTGG 61.009 66.667 0.00 0.00 0.00 4.61
339 340 2.759973 CAGGAGCGTGGGAGGCTA 60.760 66.667 0.00 0.00 39.71 3.93
340 341 2.443016 AGGAGCGTGGGAGGCTAG 60.443 66.667 0.00 0.00 39.71 3.42
341 342 3.541713 GGAGCGTGGGAGGCTAGG 61.542 72.222 0.00 0.00 39.71 3.02
342 343 2.442272 GAGCGTGGGAGGCTAGGA 60.442 66.667 0.00 0.00 39.71 2.94
343 344 2.443016 AGCGTGGGAGGCTAGGAG 60.443 66.667 0.00 0.00 37.59 3.69
344 345 4.228567 GCGTGGGAGGCTAGGAGC 62.229 72.222 0.00 0.00 41.46 4.70
345 346 2.759973 CGTGGGAGGCTAGGAGCA 60.760 66.667 0.21 0.00 44.75 4.26
346 347 2.136878 CGTGGGAGGCTAGGAGCAT 61.137 63.158 0.21 0.00 44.75 3.79
347 348 1.449353 GTGGGAGGCTAGGAGCATG 59.551 63.158 0.21 0.00 44.75 4.06
348 349 1.767672 TGGGAGGCTAGGAGCATGG 60.768 63.158 0.21 0.00 44.75 3.66
349 350 2.524204 GGGAGGCTAGGAGCATGGG 61.524 68.421 0.21 0.00 44.75 4.00
350 351 1.460305 GGAGGCTAGGAGCATGGGA 60.460 63.158 0.21 0.00 44.75 4.37
351 352 1.479368 GGAGGCTAGGAGCATGGGAG 61.479 65.000 0.21 0.00 44.75 4.30
352 353 1.461075 AGGCTAGGAGCATGGGAGG 60.461 63.158 0.21 0.00 44.75 4.30
353 354 2.429494 GCTAGGAGCATGGGAGGC 59.571 66.667 0.00 0.00 41.89 4.70
354 355 2.446848 GCTAGGAGCATGGGAGGCA 61.447 63.158 0.00 0.00 41.89 4.75
355 356 1.753470 CTAGGAGCATGGGAGGCAG 59.247 63.158 0.00 0.00 0.00 4.85
356 357 1.766625 CTAGGAGCATGGGAGGCAGG 61.767 65.000 0.00 0.00 0.00 4.85
357 358 2.256156 TAGGAGCATGGGAGGCAGGA 62.256 60.000 0.00 0.00 0.00 3.86
358 359 2.509916 GAGCATGGGAGGCAGGAG 59.490 66.667 0.00 0.00 0.00 3.69
359 360 3.771110 GAGCATGGGAGGCAGGAGC 62.771 68.421 0.00 0.00 41.10 4.70
361 362 3.790437 CATGGGAGGCAGGAGCGT 61.790 66.667 0.00 0.00 43.41 5.07
362 363 3.790437 ATGGGAGGCAGGAGCGTG 61.790 66.667 0.00 0.00 43.41 5.34
364 365 4.459089 GGGAGGCAGGAGCGTGTC 62.459 72.222 0.00 0.00 43.41 3.67
365 366 3.695606 GGAGGCAGGAGCGTGTCA 61.696 66.667 0.00 0.00 43.41 3.58
366 367 2.343758 GAGGCAGGAGCGTGTCAA 59.656 61.111 0.00 0.00 43.41 3.18
367 368 2.029844 GAGGCAGGAGCGTGTCAAC 61.030 63.158 0.00 0.00 43.41 3.18
368 369 2.280797 GGCAGGAGCGTGTCAACA 60.281 61.111 0.00 0.00 43.41 3.33
369 370 1.672356 GGCAGGAGCGTGTCAACAT 60.672 57.895 0.00 0.00 43.41 2.71
370 371 0.391130 GGCAGGAGCGTGTCAACATA 60.391 55.000 0.00 0.00 43.41 2.29
371 372 0.721718 GCAGGAGCGTGTCAACATAC 59.278 55.000 0.00 0.00 0.00 2.39
372 373 1.939381 GCAGGAGCGTGTCAACATACA 60.939 52.381 0.00 0.00 0.00 2.29
373 374 1.726791 CAGGAGCGTGTCAACATACAC 59.273 52.381 0.00 0.00 45.10 2.90
425 426 7.966339 ATAGTGGGTAGTAACATAAGTGTGA 57.034 36.000 0.00 0.00 38.92 3.58
426 427 6.869206 AGTGGGTAGTAACATAAGTGTGAT 57.131 37.500 0.00 0.00 38.92 3.06
427 428 6.640518 AGTGGGTAGTAACATAAGTGTGATG 58.359 40.000 0.00 0.00 38.92 3.07
428 429 6.212791 AGTGGGTAGTAACATAAGTGTGATGT 59.787 38.462 0.00 0.00 38.92 3.06
429 430 6.534079 GTGGGTAGTAACATAAGTGTGATGTC 59.466 42.308 0.00 0.00 38.92 3.06
430 431 6.211785 TGGGTAGTAACATAAGTGTGATGTCA 59.788 38.462 0.00 0.00 38.92 3.58
431 432 7.093068 TGGGTAGTAACATAAGTGTGATGTCAT 60.093 37.037 0.00 0.00 38.92 3.06
432 433 8.418662 GGGTAGTAACATAAGTGTGATGTCATA 58.581 37.037 0.00 0.00 38.92 2.15
433 434 9.464714 GGTAGTAACATAAGTGTGATGTCATAG 57.535 37.037 0.00 0.00 38.92 2.23
438 439 7.545362 ACATAAGTGTGATGTCATAGAAAGC 57.455 36.000 0.00 0.00 37.14 3.51
439 440 7.334090 ACATAAGTGTGATGTCATAGAAAGCT 58.666 34.615 0.00 0.00 37.14 3.74
440 441 7.826252 ACATAAGTGTGATGTCATAGAAAGCTT 59.174 33.333 0.00 0.00 37.14 3.74
441 442 6.734104 AAGTGTGATGTCATAGAAAGCTTC 57.266 37.500 0.00 0.00 0.00 3.86
442 443 5.798132 AGTGTGATGTCATAGAAAGCTTCA 58.202 37.500 0.00 0.00 0.00 3.02
443 444 6.413052 AGTGTGATGTCATAGAAAGCTTCAT 58.587 36.000 0.00 0.00 0.00 2.57
444 445 6.883217 AGTGTGATGTCATAGAAAGCTTCATT 59.117 34.615 0.00 0.00 0.00 2.57
445 446 7.392673 AGTGTGATGTCATAGAAAGCTTCATTT 59.607 33.333 0.00 0.00 0.00 2.32
446 447 8.668353 GTGTGATGTCATAGAAAGCTTCATTTA 58.332 33.333 0.00 0.00 0.00 1.40
447 448 9.399797 TGTGATGTCATAGAAAGCTTCATTTAT 57.600 29.630 0.00 0.00 0.00 1.40
452 453 9.905713 TGTCATAGAAAGCTTCATTTATTAGGT 57.094 29.630 0.00 0.00 0.00 3.08
473 474 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
474 475 7.170965 AGGTTATAGACTCATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
475 476 7.017551 AGGTTATAGACTCATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
476 477 7.119846 GGTTATAGACTCATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
477 478 4.508551 AGACTCATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
478 479 4.458397 AGACTCATATTGCATTGGGACAG 58.542 43.478 0.00 0.00 42.39 3.51
479 480 3.559069 ACTCATATTGCATTGGGACAGG 58.441 45.455 0.00 0.00 42.39 4.00
480 481 3.053395 ACTCATATTGCATTGGGACAGGT 60.053 43.478 0.00 0.00 42.39 4.00
481 482 3.289836 TCATATTGCATTGGGACAGGTG 58.710 45.455 0.00 0.00 42.39 4.00
482 483 3.053768 TCATATTGCATTGGGACAGGTGA 60.054 43.478 0.00 0.00 42.39 4.02
483 484 2.537633 ATTGCATTGGGACAGGTGAT 57.462 45.000 0.00 0.00 42.39 3.06
484 485 1.548081 TTGCATTGGGACAGGTGATG 58.452 50.000 0.00 0.00 42.39 3.07
486 487 1.203038 TGCATTGGGACAGGTGATGTT 60.203 47.619 0.00 0.00 44.17 2.71
487 488 1.203052 GCATTGGGACAGGTGATGTTG 59.797 52.381 0.00 0.00 44.17 3.33
488 489 1.203052 CATTGGGACAGGTGATGTTGC 59.797 52.381 0.00 0.00 44.17 4.17
489 490 0.539438 TTGGGACAGGTGATGTTGCC 60.539 55.000 0.00 0.00 44.17 4.52
490 491 2.040544 GGGACAGGTGATGTTGCCG 61.041 63.158 0.00 0.00 44.17 5.69
491 492 1.302511 GGACAGGTGATGTTGCCGT 60.303 57.895 0.00 0.00 44.17 5.68
492 493 0.036765 GGACAGGTGATGTTGCCGTA 60.037 55.000 0.00 0.00 44.17 4.02
493 494 1.609580 GGACAGGTGATGTTGCCGTAA 60.610 52.381 0.00 0.00 44.17 3.18
494 495 1.463444 GACAGGTGATGTTGCCGTAAC 59.537 52.381 0.00 0.00 44.17 2.50
495 496 1.071699 ACAGGTGATGTTGCCGTAACT 59.928 47.619 0.90 0.00 39.96 2.24
496 497 2.300723 ACAGGTGATGTTGCCGTAACTA 59.699 45.455 0.90 0.00 39.96 2.24
497 498 2.930040 CAGGTGATGTTGCCGTAACTAG 59.070 50.000 0.90 0.00 40.05 2.57
498 499 1.664151 GGTGATGTTGCCGTAACTAGC 59.336 52.381 0.90 0.00 40.05 3.42
499 500 2.618053 GTGATGTTGCCGTAACTAGCT 58.382 47.619 0.90 0.00 40.05 3.32
500 501 3.429822 GGTGATGTTGCCGTAACTAGCTA 60.430 47.826 0.90 0.00 40.05 3.32
501 502 4.178540 GTGATGTTGCCGTAACTAGCTAA 58.821 43.478 0.00 0.00 40.05 3.09
502 503 4.267928 GTGATGTTGCCGTAACTAGCTAAG 59.732 45.833 0.00 0.00 40.05 2.18
503 504 3.947910 TGTTGCCGTAACTAGCTAAGT 57.052 42.857 0.00 0.00 41.49 2.24
505 506 5.389859 TGTTGCCGTAACTAGCTAAGTTA 57.610 39.130 10.09 10.09 46.85 2.24
516 517 7.628769 AACTAGCTAAGTTACTCAGACTACC 57.371 40.000 0.00 0.00 46.85 3.18
517 518 6.961042 ACTAGCTAAGTTACTCAGACTACCT 58.039 40.000 0.00 0.00 33.35 3.08
518 519 7.049754 ACTAGCTAAGTTACTCAGACTACCTC 58.950 42.308 0.00 0.00 33.35 3.85
519 520 6.069705 AGCTAAGTTACTCAGACTACCTCT 57.930 41.667 0.00 0.00 0.00 3.69
520 521 6.117488 AGCTAAGTTACTCAGACTACCTCTC 58.883 44.000 0.00 0.00 0.00 3.20
521 522 6.069847 AGCTAAGTTACTCAGACTACCTCTCT 60.070 42.308 0.00 0.00 0.00 3.10
522 523 6.259387 GCTAAGTTACTCAGACTACCTCTCTC 59.741 46.154 0.00 0.00 0.00 3.20
523 524 6.382919 AAGTTACTCAGACTACCTCTCTCT 57.617 41.667 0.00 0.00 0.00 3.10
524 525 6.382919 AGTTACTCAGACTACCTCTCTCTT 57.617 41.667 0.00 0.00 0.00 2.85
525 526 6.412214 AGTTACTCAGACTACCTCTCTCTTC 58.588 44.000 0.00 0.00 0.00 2.87
526 527 4.919774 ACTCAGACTACCTCTCTCTTCA 57.080 45.455 0.00 0.00 0.00 3.02
527 528 5.450818 ACTCAGACTACCTCTCTCTTCAT 57.549 43.478 0.00 0.00 0.00 2.57
528 529 5.826643 ACTCAGACTACCTCTCTCTTCATT 58.173 41.667 0.00 0.00 0.00 2.57
529 530 6.964464 ACTCAGACTACCTCTCTCTTCATTA 58.036 40.000 0.00 0.00 0.00 1.90
530 531 7.406916 ACTCAGACTACCTCTCTCTTCATTAA 58.593 38.462 0.00 0.00 0.00 1.40
531 532 7.338449 ACTCAGACTACCTCTCTCTTCATTAAC 59.662 40.741 0.00 0.00 0.00 2.01
532 533 7.406916 TCAGACTACCTCTCTCTTCATTAACT 58.593 38.462 0.00 0.00 0.00 2.24
533 534 7.554835 TCAGACTACCTCTCTCTTCATTAACTC 59.445 40.741 0.00 0.00 0.00 3.01
534 535 7.338196 CAGACTACCTCTCTCTTCATTAACTCA 59.662 40.741 0.00 0.00 0.00 3.41
535 536 8.058847 AGACTACCTCTCTCTTCATTAACTCAT 58.941 37.037 0.00 0.00 0.00 2.90
536 537 8.602472 ACTACCTCTCTCTTCATTAACTCATT 57.398 34.615 0.00 0.00 0.00 2.57
537 538 8.474025 ACTACCTCTCTCTTCATTAACTCATTG 58.526 37.037 0.00 0.00 0.00 2.82
538 539 6.112058 ACCTCTCTCTTCATTAACTCATTGC 58.888 40.000 0.00 0.00 0.00 3.56
539 540 5.526846 CCTCTCTCTTCATTAACTCATTGCC 59.473 44.000 0.00 0.00 0.00 4.52
540 541 6.053632 TCTCTCTTCATTAACTCATTGCCA 57.946 37.500 0.00 0.00 0.00 4.92
541 542 5.877012 TCTCTCTTCATTAACTCATTGCCAC 59.123 40.000 0.00 0.00 0.00 5.01
542 543 5.559770 TCTCTTCATTAACTCATTGCCACA 58.440 37.500 0.00 0.00 0.00 4.17
543 544 6.182627 TCTCTTCATTAACTCATTGCCACAT 58.817 36.000 0.00 0.00 0.00 3.21
544 545 7.337938 TCTCTTCATTAACTCATTGCCACATA 58.662 34.615 0.00 0.00 0.00 2.29
545 546 7.828717 TCTCTTCATTAACTCATTGCCACATAA 59.171 33.333 0.00 0.00 0.00 1.90
546 547 8.347004 TCTTCATTAACTCATTGCCACATAAA 57.653 30.769 0.00 0.00 0.00 1.40
547 548 8.970020 TCTTCATTAACTCATTGCCACATAAAT 58.030 29.630 0.00 0.00 0.00 1.40
555 556 8.200364 ACTCATTGCCACATAAATAAATTTGC 57.800 30.769 0.00 0.00 0.00 3.68
556 557 8.042515 ACTCATTGCCACATAAATAAATTTGCT 58.957 29.630 0.00 0.00 0.00 3.91
557 558 8.199176 TCATTGCCACATAAATAAATTTGCTG 57.801 30.769 0.00 0.00 0.00 4.41
558 559 8.039538 TCATTGCCACATAAATAAATTTGCTGA 58.960 29.630 0.00 0.00 0.00 4.26
559 560 7.830940 TTGCCACATAAATAAATTTGCTGAG 57.169 32.000 0.00 0.00 0.00 3.35
560 561 6.934056 TGCCACATAAATAAATTTGCTGAGT 58.066 32.000 0.00 0.00 0.00 3.41
561 562 7.385267 TGCCACATAAATAAATTTGCTGAGTT 58.615 30.769 0.00 0.00 0.00 3.01
562 563 7.331440 TGCCACATAAATAAATTTGCTGAGTTG 59.669 33.333 0.00 0.00 0.00 3.16
563 564 7.201548 GCCACATAAATAAATTTGCTGAGTTGG 60.202 37.037 0.00 1.82 0.00 3.77
564 565 7.278424 CCACATAAATAAATTTGCTGAGTTGGG 59.722 37.037 0.00 0.00 0.00 4.12
565 566 6.818142 ACATAAATAAATTTGCTGAGTTGGGC 59.182 34.615 0.00 0.00 0.00 5.36
566 567 5.488262 AAATAAATTTGCTGAGTTGGGCT 57.512 34.783 0.00 0.00 0.00 5.19
567 568 4.725790 ATAAATTTGCTGAGTTGGGCTC 57.274 40.909 0.00 0.00 44.36 4.70
575 576 3.031660 GAGTTGGGCTCGACGTTAG 57.968 57.895 0.00 0.00 34.13 2.34
576 577 0.243095 GAGTTGGGCTCGACGTTAGT 59.757 55.000 0.00 0.00 34.13 2.24
577 578 1.470098 GAGTTGGGCTCGACGTTAGTA 59.530 52.381 0.00 0.00 34.13 1.82
578 579 2.097825 AGTTGGGCTCGACGTTAGTAT 58.902 47.619 0.00 0.00 32.56 2.12
579 580 2.098770 AGTTGGGCTCGACGTTAGTATC 59.901 50.000 0.00 0.00 32.56 2.24
580 581 1.753930 TGGGCTCGACGTTAGTATCA 58.246 50.000 0.00 0.00 0.00 2.15
581 582 2.093890 TGGGCTCGACGTTAGTATCAA 58.906 47.619 0.00 0.00 0.00 2.57
582 583 2.492881 TGGGCTCGACGTTAGTATCAAA 59.507 45.455 0.00 0.00 0.00 2.69
583 584 3.114065 GGGCTCGACGTTAGTATCAAAG 58.886 50.000 0.00 0.00 0.00 2.77
584 585 3.428589 GGGCTCGACGTTAGTATCAAAGT 60.429 47.826 0.00 0.00 0.00 2.66
585 586 4.171754 GGCTCGACGTTAGTATCAAAGTT 58.828 43.478 0.00 0.00 0.00 2.66
586 587 5.335127 GGCTCGACGTTAGTATCAAAGTTA 58.665 41.667 0.00 0.00 0.00 2.24
587 588 5.228843 GGCTCGACGTTAGTATCAAAGTTAC 59.771 44.000 0.00 0.00 0.00 2.50
588 589 6.026513 GCTCGACGTTAGTATCAAAGTTACT 58.973 40.000 0.00 0.00 34.40 2.24
589 590 6.194325 GCTCGACGTTAGTATCAAAGTTACTC 59.806 42.308 0.00 0.00 32.35 2.59
590 591 6.546395 TCGACGTTAGTATCAAAGTTACTCC 58.454 40.000 0.00 0.00 32.35 3.85
591 592 5.741040 CGACGTTAGTATCAAAGTTACTCCC 59.259 44.000 0.00 0.00 32.35 4.30
592 593 6.594788 ACGTTAGTATCAAAGTTACTCCCA 57.405 37.500 0.00 0.00 32.35 4.37
593 594 7.179076 ACGTTAGTATCAAAGTTACTCCCAT 57.821 36.000 0.00 0.00 32.35 4.00
594 595 7.618137 ACGTTAGTATCAAAGTTACTCCCATT 58.382 34.615 0.00 0.00 32.35 3.16
595 596 8.752187 ACGTTAGTATCAAAGTTACTCCCATTA 58.248 33.333 0.00 0.00 32.35 1.90
596 597 9.760077 CGTTAGTATCAAAGTTACTCCCATTAT 57.240 33.333 0.00 0.00 32.35 1.28
599 600 6.998673 AGTATCAAAGTTACTCCCATTATGGC 59.001 38.462 5.57 0.00 35.79 4.40
600 601 5.450818 TCAAAGTTACTCCCATTATGGCT 57.549 39.130 5.57 0.00 35.79 4.75
601 602 6.569127 TCAAAGTTACTCCCATTATGGCTA 57.431 37.500 5.57 0.00 35.79 3.93
602 603 6.591935 TCAAAGTTACTCCCATTATGGCTAG 58.408 40.000 5.57 7.90 35.79 3.42
603 604 6.157994 TCAAAGTTACTCCCATTATGGCTAGT 59.842 38.462 17.50 17.50 35.79 2.57
604 605 5.810080 AGTTACTCCCATTATGGCTAGTC 57.190 43.478 17.07 7.70 35.79 2.59
605 606 5.468658 AGTTACTCCCATTATGGCTAGTCT 58.531 41.667 17.07 9.36 35.79 3.24
606 607 5.905913 AGTTACTCCCATTATGGCTAGTCTT 59.094 40.000 17.07 0.00 35.79 3.01
607 608 7.073854 AGTTACTCCCATTATGGCTAGTCTTA 58.926 38.462 17.07 5.85 35.79 2.10
608 609 7.735321 AGTTACTCCCATTATGGCTAGTCTTAT 59.265 37.037 17.07 4.41 35.79 1.73
609 610 6.365970 ACTCCCATTATGGCTAGTCTTATG 57.634 41.667 5.57 0.00 35.79 1.90
610 611 5.846714 ACTCCCATTATGGCTAGTCTTATGT 59.153 40.000 5.57 0.00 35.79 2.29
611 612 6.114187 TCCCATTATGGCTAGTCTTATGTG 57.886 41.667 5.57 0.00 35.79 3.21
612 613 4.697352 CCCATTATGGCTAGTCTTATGTGC 59.303 45.833 5.57 0.00 35.79 4.57
613 614 5.513788 CCCATTATGGCTAGTCTTATGTGCT 60.514 44.000 5.57 0.00 35.79 4.40
614 615 5.641209 CCATTATGGCTAGTCTTATGTGCTC 59.359 44.000 0.00 0.00 0.00 4.26
615 616 6.462500 CATTATGGCTAGTCTTATGTGCTCT 58.538 40.000 0.00 0.00 0.00 4.09
616 617 3.808466 TGGCTAGTCTTATGTGCTCTG 57.192 47.619 0.00 0.00 0.00 3.35
617 618 2.432146 TGGCTAGTCTTATGTGCTCTGG 59.568 50.000 0.00 0.00 0.00 3.86
618 619 2.432510 GGCTAGTCTTATGTGCTCTGGT 59.567 50.000 0.00 0.00 0.00 4.00
619 620 3.452474 GCTAGTCTTATGTGCTCTGGTG 58.548 50.000 0.00 0.00 0.00 4.17
620 621 3.739519 GCTAGTCTTATGTGCTCTGGTGG 60.740 52.174 0.00 0.00 0.00 4.61
621 622 2.540383 AGTCTTATGTGCTCTGGTGGA 58.460 47.619 0.00 0.00 0.00 4.02
622 623 2.906389 AGTCTTATGTGCTCTGGTGGAA 59.094 45.455 0.00 0.00 0.00 3.53
623 624 3.055530 AGTCTTATGTGCTCTGGTGGAAG 60.056 47.826 0.00 0.00 0.00 3.46
624 625 2.237143 TCTTATGTGCTCTGGTGGAAGG 59.763 50.000 0.00 0.00 0.00 3.46
625 626 1.951209 TATGTGCTCTGGTGGAAGGA 58.049 50.000 0.00 0.00 0.00 3.36
626 627 0.326264 ATGTGCTCTGGTGGAAGGAC 59.674 55.000 0.00 0.00 0.00 3.85
627 628 1.003233 GTGCTCTGGTGGAAGGACC 60.003 63.158 0.00 0.00 39.54 4.46
635 636 3.249189 TGGAAGGACCAAGCGCCT 61.249 61.111 2.29 0.00 46.75 5.52
636 637 2.747855 GGAAGGACCAAGCGCCTG 60.748 66.667 2.29 0.00 38.79 4.85
637 638 2.347490 GAAGGACCAAGCGCCTGA 59.653 61.111 7.79 0.00 34.00 3.86
638 639 1.302511 GAAGGACCAAGCGCCTGAA 60.303 57.895 7.79 0.00 34.00 3.02
639 640 0.678048 GAAGGACCAAGCGCCTGAAT 60.678 55.000 7.79 0.00 34.00 2.57
640 641 0.251341 AAGGACCAAGCGCCTGAATT 60.251 50.000 7.79 0.00 34.00 2.17
641 642 0.251341 AGGACCAAGCGCCTGAATTT 60.251 50.000 7.79 0.00 32.06 1.82
642 643 0.109132 GGACCAAGCGCCTGAATTTG 60.109 55.000 7.79 2.42 0.00 2.32
643 644 0.598065 GACCAAGCGCCTGAATTTGT 59.402 50.000 7.79 0.00 0.00 2.83
644 645 1.810151 GACCAAGCGCCTGAATTTGTA 59.190 47.619 7.79 0.00 0.00 2.41
645 646 2.423538 GACCAAGCGCCTGAATTTGTAT 59.576 45.455 7.79 0.00 0.00 2.29
646 647 2.164219 ACCAAGCGCCTGAATTTGTATG 59.836 45.455 7.79 0.00 0.00 2.39
647 648 2.164219 CCAAGCGCCTGAATTTGTATGT 59.836 45.455 7.79 0.00 0.00 2.29
648 649 3.173599 CAAGCGCCTGAATTTGTATGTG 58.826 45.455 2.29 0.00 0.00 3.21
649 650 2.710377 AGCGCCTGAATTTGTATGTGA 58.290 42.857 2.29 0.00 0.00 3.58
650 651 2.420022 AGCGCCTGAATTTGTATGTGAC 59.580 45.455 2.29 0.00 0.00 3.67
651 652 2.420022 GCGCCTGAATTTGTATGTGACT 59.580 45.455 0.00 0.00 0.00 3.41
652 653 3.485877 GCGCCTGAATTTGTATGTGACTC 60.486 47.826 0.00 0.00 0.00 3.36
653 654 3.242091 CGCCTGAATTTGTATGTGACTCG 60.242 47.826 0.00 0.00 0.00 4.18
654 655 3.063997 GCCTGAATTTGTATGTGACTCGG 59.936 47.826 0.00 0.00 0.00 4.63
655 656 4.253685 CCTGAATTTGTATGTGACTCGGT 58.746 43.478 0.00 0.00 0.00 4.69
656 657 4.695455 CCTGAATTTGTATGTGACTCGGTT 59.305 41.667 0.00 0.00 0.00 4.44
657 658 5.390885 CCTGAATTTGTATGTGACTCGGTTG 60.391 44.000 0.00 0.00 0.00 3.77
658 659 4.083537 TGAATTTGTATGTGACTCGGTTGC 60.084 41.667 0.00 0.00 0.00 4.17
659 660 1.803334 TTGTATGTGACTCGGTTGCC 58.197 50.000 0.00 0.00 0.00 4.52
660 661 0.682292 TGTATGTGACTCGGTTGCCA 59.318 50.000 0.00 0.00 0.00 4.92
661 662 1.337728 TGTATGTGACTCGGTTGCCAG 60.338 52.381 0.00 0.00 0.00 4.85
662 663 0.391130 TATGTGACTCGGTTGCCAGC 60.391 55.000 0.00 0.00 0.00 4.85
663 664 2.031163 GTGACTCGGTTGCCAGCT 59.969 61.111 0.00 0.00 0.00 4.24
664 665 1.292223 GTGACTCGGTTGCCAGCTA 59.708 57.895 0.00 0.00 0.00 3.32
665 666 0.108138 GTGACTCGGTTGCCAGCTAT 60.108 55.000 0.00 0.00 0.00 2.97
666 667 0.613260 TGACTCGGTTGCCAGCTATT 59.387 50.000 0.00 0.00 0.00 1.73
667 668 1.291132 GACTCGGTTGCCAGCTATTC 58.709 55.000 0.00 0.00 0.00 1.75
668 669 0.107654 ACTCGGTTGCCAGCTATTCC 60.108 55.000 0.00 0.00 0.00 3.01
669 670 1.153449 TCGGTTGCCAGCTATTCCG 60.153 57.895 8.12 8.12 39.40 4.30
670 671 2.823829 CGGTTGCCAGCTATTCCGC 61.824 63.158 0.00 0.00 0.00 5.54
671 672 1.452108 GGTTGCCAGCTATTCCGCT 60.452 57.895 0.00 0.00 41.90 5.52
677 678 2.202932 AGCTATTCCGCTGTGCCG 60.203 61.111 0.00 0.00 39.16 5.69
684 685 3.428282 CCGCTGTGCCGGGTTAAC 61.428 66.667 2.18 0.00 44.46 2.01
685 686 3.428282 CGCTGTGCCGGGTTAACC 61.428 66.667 16.85 16.85 0.00 2.85
686 687 2.281900 GCTGTGCCGGGTTAACCA 60.282 61.111 25.71 2.37 40.22 3.67
687 688 1.899534 GCTGTGCCGGGTTAACCAA 60.900 57.895 25.71 5.77 40.22 3.67
688 689 1.248101 GCTGTGCCGGGTTAACCAAT 61.248 55.000 25.71 0.00 40.22 3.16
689 690 0.525761 CTGTGCCGGGTTAACCAATG 59.474 55.000 25.71 14.29 40.22 2.82
690 691 0.896019 TGTGCCGGGTTAACCAATGG 60.896 55.000 25.71 22.47 40.22 3.16
691 692 0.609681 GTGCCGGGTTAACCAATGGA 60.610 55.000 25.71 11.63 40.22 3.41
692 693 0.112606 TGCCGGGTTAACCAATGGAA 59.887 50.000 25.71 15.58 40.22 3.53
693 694 1.272760 TGCCGGGTTAACCAATGGAAT 60.273 47.619 25.71 0.00 40.22 3.01
694 695 1.136110 GCCGGGTTAACCAATGGAATG 59.864 52.381 25.71 5.91 40.22 2.67
695 696 2.729194 CCGGGTTAACCAATGGAATGA 58.271 47.619 25.71 0.00 40.22 2.57
696 697 3.093057 CCGGGTTAACCAATGGAATGAA 58.907 45.455 25.71 0.00 40.22 2.57
697 698 3.704061 CCGGGTTAACCAATGGAATGAAT 59.296 43.478 25.71 0.00 40.22 2.57
698 699 4.161377 CCGGGTTAACCAATGGAATGAATT 59.839 41.667 25.71 0.00 40.22 2.17
699 700 5.337975 CCGGGTTAACCAATGGAATGAATTT 60.338 40.000 25.71 0.00 40.22 1.82
700 701 6.169800 CGGGTTAACCAATGGAATGAATTTT 58.830 36.000 25.71 0.00 40.22 1.82
701 702 6.312672 CGGGTTAACCAATGGAATGAATTTTC 59.687 38.462 25.71 1.60 40.22 2.29
702 703 6.597672 GGGTTAACCAATGGAATGAATTTTCC 59.402 38.462 25.71 2.41 41.49 3.13
703 704 7.164803 GGTTAACCAATGGAATGAATTTTCCA 58.835 34.615 20.12 12.85 46.03 3.53
704 705 7.334171 GGTTAACCAATGGAATGAATTTTCCAG 59.666 37.037 20.12 6.47 45.62 3.86
714 715 8.831715 GGAATGAATTTTCCAGCTTTAAAAGA 57.168 30.769 4.33 0.00 43.92 2.52
740 741 0.031178 CACAAGTTTCACCTGCAGCC 59.969 55.000 8.66 0.00 0.00 4.85
855 856 1.068055 ACCGTCCGTCAACACTGATAC 60.068 52.381 0.00 0.00 33.05 2.24
867 868 2.030185 ACACTGATACATACCGATCGGC 60.030 50.000 33.62 15.88 39.32 5.54
904 905 0.767060 ACCTTCCGGAAACCTCCTGT 60.767 55.000 19.39 4.17 39.93 4.00
947 948 4.075793 CCTCCCACCTCTCCCCGA 62.076 72.222 0.00 0.00 0.00 5.14
951 952 2.360980 CCACCTCTCCCCGACTCT 59.639 66.667 0.00 0.00 0.00 3.24
952 953 2.055042 CCACCTCTCCCCGACTCTG 61.055 68.421 0.00 0.00 0.00 3.35
1187 1200 3.692406 GGCGACGTCCAAGGAGGT 61.692 66.667 13.77 13.77 44.52 3.85
1473 1487 0.319083 TGGTGTGGTACGTGTCATCC 59.681 55.000 0.00 4.57 0.00 3.51
1478 1492 1.066430 GTGGTACGTGTCATCCATGGT 60.066 52.381 12.58 0.00 34.14 3.55
1486 1500 3.751175 CGTGTCATCCATGGTTTGTACTT 59.249 43.478 12.58 0.00 0.00 2.24
1536 1551 4.237724 GACGATTCTGTCATTCTGTGTGA 58.762 43.478 0.00 0.00 38.75 3.58
1552 1567 6.093404 TCTGTGTGATTTCTTTCGCTAGTAG 58.907 40.000 0.00 0.00 0.00 2.57
1622 1644 4.142665 TGTCACTCTGTATGCTACTCGTTC 60.143 45.833 0.00 0.00 0.00 3.95
1683 1705 7.952671 TGGTACTATCACTGAAGATGGTTATC 58.047 38.462 8.48 0.00 39.86 1.75
1708 1730 5.119898 CAGTCAGTTTGAACTAGCATGTCTC 59.880 44.000 0.00 0.00 37.08 3.36
1709 1731 4.090642 GTCAGTTTGAACTAGCATGTCTCG 59.909 45.833 0.00 0.00 37.08 4.04
1737 1759 7.114882 CTGAACAGGAGAGCAATAATTATCG 57.885 40.000 0.00 0.00 0.00 2.92
1757 1779 2.034305 CGGGGTAGTATGTGCTACTGAC 59.966 54.545 7.94 0.88 40.94 3.51
1765 1787 5.294356 AGTATGTGCTACTGACGTGAAAAA 58.706 37.500 0.00 0.00 39.28 1.94
1786 1808 6.422776 AAAACGAATGCTCTATCATTTCGT 57.577 33.333 3.43 3.43 39.44 3.85
1809 1831 4.469586 TCCCAAATAGGCAAGGGAAATTTC 59.530 41.667 9.83 9.83 46.94 2.17
1858 1880 1.076332 CGCGCCCTTGGTATATTAGC 58.924 55.000 0.00 0.00 0.00 3.09
1865 1887 6.112734 CGCCCTTGGTATATTAGCATAATGA 58.887 40.000 0.00 0.00 35.91 2.57
1894 1917 5.575957 AGCGTAATTCTGCAAAATGATCAG 58.424 37.500 0.09 0.00 0.00 2.90
1895 1918 4.205792 GCGTAATTCTGCAAAATGATCAGC 59.794 41.667 0.09 0.00 0.00 4.26
1896 1919 5.334319 CGTAATTCTGCAAAATGATCAGCA 58.666 37.500 0.09 4.29 35.43 4.41
1897 1920 5.975344 CGTAATTCTGCAAAATGATCAGCAT 59.025 36.000 7.71 0.00 39.43 3.79
1963 1986 1.223763 GGGGTTCGATTCCCTGGAC 59.776 63.158 20.64 5.62 44.07 4.02
1966 1989 1.079405 GTTCGATTCCCTGGACGCA 60.079 57.895 0.00 0.00 0.00 5.24
1967 1990 0.672401 GTTCGATTCCCTGGACGCAA 60.672 55.000 0.00 0.00 0.00 4.85
1969 1992 0.251916 TCGATTCCCTGGACGCAAAT 59.748 50.000 0.00 0.00 0.00 2.32
1970 1993 0.657840 CGATTCCCTGGACGCAAATC 59.342 55.000 0.00 0.00 0.00 2.17
1971 1994 1.025041 GATTCCCTGGACGCAAATCC 58.975 55.000 0.00 0.00 39.45 3.01
1999 2025 3.574614 ACATTTCTTGTTAACCATGCGC 58.425 40.909 0.00 0.00 33.74 6.09
2009 2035 1.315257 AACCATGCGCATTCCCTGTC 61.315 55.000 22.81 0.00 0.00 3.51
2024 2052 2.103094 CCCTGTCATGTCATATGTCCGT 59.897 50.000 1.90 0.00 0.00 4.69
2108 2318 9.603921 ATTTATTTTCATTGAAGAAATCGCCAT 57.396 25.926 0.00 0.00 37.35 4.40
2112 2322 9.903682 ATTTTCATTGAAGAAATCGCCATATAG 57.096 29.630 0.00 0.00 37.35 1.31
2116 2326 7.602644 TCATTGAAGAAATCGCCATATAGTACC 59.397 37.037 0.00 0.00 0.00 3.34
2120 2330 5.334421 AGAAATCGCCATATAGTACCTCCT 58.666 41.667 0.00 0.00 0.00 3.69
2121 2331 5.780793 AGAAATCGCCATATAGTACCTCCTT 59.219 40.000 0.00 0.00 0.00 3.36
2122 2332 6.270231 AGAAATCGCCATATAGTACCTCCTTT 59.730 38.462 0.00 0.00 0.00 3.11
2123 2333 6.435292 AATCGCCATATAGTACCTCCTTTT 57.565 37.500 0.00 0.00 0.00 2.27
2125 2335 4.897076 TCGCCATATAGTACCTCCTTTTCA 59.103 41.667 0.00 0.00 0.00 2.69
2126 2336 5.364446 TCGCCATATAGTACCTCCTTTTCAA 59.636 40.000 0.00 0.00 0.00 2.69
2127 2337 5.696724 CGCCATATAGTACCTCCTTTTCAAG 59.303 44.000 0.00 0.00 0.00 3.02
2128 2338 6.462487 CGCCATATAGTACCTCCTTTTCAAGA 60.462 42.308 0.00 0.00 0.00 3.02
2129 2339 7.454225 GCCATATAGTACCTCCTTTTCAAGAT 58.546 38.462 0.00 0.00 0.00 2.40
2130 2340 8.594550 GCCATATAGTACCTCCTTTTCAAGATA 58.405 37.037 0.00 0.00 0.00 1.98
2137 2347 8.361139 AGTACCTCCTTTTCAAGATATATGACG 58.639 37.037 0.00 0.00 0.00 4.35
2138 2348 7.361457 ACCTCCTTTTCAAGATATATGACGA 57.639 36.000 0.00 0.00 0.00 4.20
2139 2349 7.967908 ACCTCCTTTTCAAGATATATGACGAT 58.032 34.615 0.00 0.00 0.00 3.73
2140 2350 7.875041 ACCTCCTTTTCAAGATATATGACGATG 59.125 37.037 0.00 0.00 0.00 3.84
2143 2353 6.652481 CCTTTTCAAGATATATGACGATGCCT 59.348 38.462 0.00 0.00 0.00 4.75
2144 2354 7.819415 CCTTTTCAAGATATATGACGATGCCTA 59.181 37.037 0.00 0.00 0.00 3.93
2146 2356 6.208988 TCAAGATATATGACGATGCCTACC 57.791 41.667 0.00 0.00 0.00 3.18
2149 2359 6.605471 AGATATATGACGATGCCTACCAAA 57.395 37.500 0.00 0.00 0.00 3.28
2151 2361 6.874134 AGATATATGACGATGCCTACCAAAAC 59.126 38.462 0.00 0.00 0.00 2.43
2152 2362 1.434555 TGACGATGCCTACCAAAACG 58.565 50.000 0.00 0.00 0.00 3.60
2153 2363 0.725117 GACGATGCCTACCAAAACGG 59.275 55.000 0.00 0.00 42.50 4.44
2154 2364 1.303091 ACGATGCCTACCAAAACGGC 61.303 55.000 0.00 0.00 44.02 5.68
2171 4004 6.783708 AAACGGCATATATTTTGGAAAGGA 57.216 33.333 0.00 0.00 0.00 3.36
2172 4005 6.391227 AACGGCATATATTTTGGAAAGGAG 57.609 37.500 0.00 0.00 0.00 3.69
2173 4006 4.827284 ACGGCATATATTTTGGAAAGGAGG 59.173 41.667 0.00 0.00 0.00 4.30
2174 4007 4.827284 CGGCATATATTTTGGAAAGGAGGT 59.173 41.667 0.00 0.00 0.00 3.85
2186 4019 8.681486 TTTGGAAAGGAGGTAGTACTTTTTAC 57.319 34.615 0.00 0.00 34.82 2.01
2188 4021 7.804147 TGGAAAGGAGGTAGTACTTTTTACAA 58.196 34.615 0.00 0.00 34.82 2.41
2189 4022 8.273605 TGGAAAGGAGGTAGTACTTTTTACAAA 58.726 33.333 0.00 0.00 34.82 2.83
2191 4024 7.741027 AAGGAGGTAGTACTTTTTACAAAGC 57.259 36.000 0.00 0.00 43.03 3.51
2192 4025 6.834107 AGGAGGTAGTACTTTTTACAAAGCA 58.166 36.000 0.00 0.00 43.03 3.91
2193 4026 7.284820 AGGAGGTAGTACTTTTTACAAAGCAA 58.715 34.615 0.00 0.00 43.03 3.91
2195 4028 7.012610 GGAGGTAGTACTTTTTACAAAGCAACA 59.987 37.037 0.00 0.00 43.03 3.33
2196 4029 8.283699 AGGTAGTACTTTTTACAAAGCAACAA 57.716 30.769 0.00 0.00 43.03 2.83
2197 4030 8.186163 AGGTAGTACTTTTTACAAAGCAACAAC 58.814 33.333 0.00 0.00 43.03 3.32
2198 4031 7.433131 GGTAGTACTTTTTACAAAGCAACAACC 59.567 37.037 0.00 0.00 43.03 3.77
2199 4032 6.926313 AGTACTTTTTACAAAGCAACAACCA 58.074 32.000 1.20 0.00 43.03 3.67
2201 4034 7.873505 AGTACTTTTTACAAAGCAACAACCAAA 59.126 29.630 1.20 0.00 43.03 3.28
2202 4035 7.497925 ACTTTTTACAAAGCAACAACCAAAA 57.502 28.000 1.20 0.00 43.03 2.44
2203 4036 7.356540 ACTTTTTACAAAGCAACAACCAAAAC 58.643 30.769 1.20 0.00 43.03 2.43
2204 4037 6.861065 TTTTACAAAGCAACAACCAAAACA 57.139 29.167 0.00 0.00 0.00 2.83
2221 5410 9.844257 AACCAAAACATAAATGAAAAGGAATCA 57.156 25.926 0.00 0.00 0.00 2.57
2232 5421 5.591099 TGAAAAGGAATCAGAAGCAACAAC 58.409 37.500 0.00 0.00 0.00 3.32
2240 5429 7.665559 AGGAATCAGAAGCAACAACTTAATACA 59.334 33.333 0.00 0.00 0.00 2.29
2273 5469 2.730928 CACACGGCATTTCATGTTTTCC 59.269 45.455 0.00 0.00 0.00 3.13
2275 5471 3.006752 ACACGGCATTTCATGTTTTCCAT 59.993 39.130 0.00 0.00 0.00 3.41
2295 5491 4.309099 CATGTGATTTCCCTTTTGTGTGG 58.691 43.478 0.00 0.00 0.00 4.17
2307 5503 6.263617 TCCCTTTTGTGTGGTATTTCAGTTAC 59.736 38.462 0.00 0.00 0.00 2.50
2445 5645 7.657336 TGAAGTTGAGACATTTATTTTGGGAC 58.343 34.615 0.00 0.00 0.00 4.46
2453 5653 5.020132 ACATTTATTTTGGGACGGATGGAA 58.980 37.500 0.00 0.00 0.00 3.53
2455 5655 6.156083 ACATTTATTTTGGGACGGATGGAATT 59.844 34.615 0.00 0.00 0.00 2.17
2461 5661 2.092646 TGGGACGGATGGAATTAACTGG 60.093 50.000 0.00 0.00 0.00 4.00
2493 5693 5.599999 ACACAACTCTAGACTTGAACACT 57.400 39.130 16.25 0.00 0.00 3.55
2512 5712 6.648725 ACACTATAAGATCAACGAGCAAAC 57.351 37.500 0.00 0.00 0.00 2.93
2513 5713 6.163476 ACACTATAAGATCAACGAGCAAACA 58.837 36.000 0.00 0.00 0.00 2.83
2524 5724 7.428282 TCAACGAGCAAACACTATCAATTTA 57.572 32.000 0.00 0.00 0.00 1.40
2560 5760 0.670546 TTCCAAGCGCTTTCTCCTCG 60.671 55.000 22.51 7.20 0.00 4.63
2601 5801 6.764308 TGGTCAAGAAAAATGATCCTCATC 57.236 37.500 0.00 0.00 35.76 2.92
2610 5810 3.908643 ATGATCCTCATCCATCATCGG 57.091 47.619 0.00 0.00 35.21 4.18
2622 5822 6.205464 TCATCCATCATCGGCTTCTTTATTTC 59.795 38.462 0.00 0.00 0.00 2.17
2632 5832 3.065925 GCTTCTTTATTTCCTGATGCGCT 59.934 43.478 9.73 0.00 0.00 5.92
2637 5837 5.415701 TCTTTATTTCCTGATGCGCTTCTTT 59.584 36.000 22.11 5.48 0.00 2.52
2640 5840 1.896220 TCCTGATGCGCTTCTTTGTT 58.104 45.000 22.11 0.00 0.00 2.83
2698 5898 7.440523 ACAAAGCAACAACCAAAACATAAAA 57.559 28.000 0.00 0.00 0.00 1.52
2731 5931 7.277098 GGAATCAGACGCAACAACTTAATAGTA 59.723 37.037 0.00 0.00 33.17 1.82
2757 6483 1.112315 TGGCCACGCAATGTTTCCTT 61.112 50.000 0.00 0.00 0.00 3.36
2778 6530 0.602562 TTTCCATGCGCTTTCCCTTG 59.397 50.000 9.73 0.00 0.00 3.61
2790 6542 4.365723 GCTTTCCCTTGCATGTGATATTG 58.634 43.478 0.00 0.00 0.00 1.90
2854 6611 7.967890 AAATTTAACAAAGCCTTCTCATTGG 57.032 32.000 0.00 0.00 0.00 3.16
2910 6668 5.966742 AAAGGAAGCATAAGGAACAACTC 57.033 39.130 0.00 0.00 0.00 3.01
2930 6688 6.934048 ACTCAATACTACTACCTCCGTTAC 57.066 41.667 0.00 0.00 0.00 2.50
2990 6748 6.980051 AATCTACGACACTTATTTTGGGAC 57.020 37.500 0.00 0.00 0.00 4.46
2992 6750 3.389925 ACGACACTTATTTTGGGACGA 57.610 42.857 0.00 0.00 0.00 4.20
2993 6751 3.934068 ACGACACTTATTTTGGGACGAT 58.066 40.909 0.00 0.00 0.00 3.73
3006 6764 6.540438 TTTGGGACGATGAGAGTAGTAAAT 57.460 37.500 0.00 0.00 0.00 1.40
3011 6769 6.338937 GGACGATGAGAGTAGTAAATTGGTT 58.661 40.000 0.00 0.00 0.00 3.67
3014 6772 7.263496 ACGATGAGAGTAGTAAATTGGTTACC 58.737 38.462 0.00 0.00 42.80 2.85
3029 6787 3.892588 TGGTTACCCAACATTTCCTGTTC 59.107 43.478 0.00 0.00 44.99 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.637489 CGCTCCGAGATCTGCCGG 62.637 72.222 15.06 15.06 46.57 6.13
10 11 4.637489 CCGCTCCGAGATCTGCCG 62.637 72.222 0.00 0.00 0.00 5.69
11 12 3.206211 CTCCGCTCCGAGATCTGCC 62.206 68.421 0.00 0.00 30.97 4.85
12 13 2.334653 CTCCGCTCCGAGATCTGC 59.665 66.667 0.00 0.00 30.97 4.26
13 14 2.334653 GCTCCGCTCCGAGATCTG 59.665 66.667 0.00 0.00 30.97 2.90
14 15 3.283684 CGCTCCGCTCCGAGATCT 61.284 66.667 0.00 0.00 30.97 2.75
15 16 3.587933 ACGCTCCGCTCCGAGATC 61.588 66.667 0.00 0.00 30.97 2.75
16 17 3.893763 CACGCTCCGCTCCGAGAT 61.894 66.667 0.00 0.00 30.97 2.75
84 85 4.899239 CATGCGTCGCCCTCCTCC 62.899 72.222 15.88 0.00 0.00 4.30
145 146 3.854669 CTACCGGCAGGCCCTCTG 61.855 72.222 0.00 0.00 46.03 3.35
150 151 3.682292 CTTGTCCTACCGGCAGGCC 62.682 68.421 16.74 5.08 42.76 5.19
151 152 2.125106 CTTGTCCTACCGGCAGGC 60.125 66.667 16.74 11.65 42.76 4.85
152 153 2.584608 CCTTGTCCTACCGGCAGG 59.415 66.667 15.35 15.35 45.13 4.85
153 154 2.125106 GCCTTGTCCTACCGGCAG 60.125 66.667 0.00 0.00 42.06 4.85
154 155 3.712907 GGCCTTGTCCTACCGGCA 61.713 66.667 0.00 0.00 44.23 5.69
155 156 4.832608 CGGCCTTGTCCTACCGGC 62.833 72.222 0.00 0.00 41.95 6.13
156 157 3.072468 TCGGCCTTGTCCTACCGG 61.072 66.667 0.00 0.00 45.65 5.28
157 158 1.885163 AACTCGGCCTTGTCCTACCG 61.885 60.000 0.00 0.00 46.97 4.02
158 159 0.108281 GAACTCGGCCTTGTCCTACC 60.108 60.000 0.00 0.00 0.00 3.18
159 160 0.458025 CGAACTCGGCCTTGTCCTAC 60.458 60.000 0.00 0.00 35.37 3.18
160 161 1.888018 CGAACTCGGCCTTGTCCTA 59.112 57.895 0.00 0.00 35.37 2.94
161 162 2.657237 CGAACTCGGCCTTGTCCT 59.343 61.111 0.00 0.00 35.37 3.85
162 163 3.119096 GCGAACTCGGCCTTGTCC 61.119 66.667 0.00 0.00 40.23 4.02
163 164 3.479269 CGCGAACTCGGCCTTGTC 61.479 66.667 0.00 0.00 40.23 3.18
187 188 3.151022 GTCGAGCCCCTCCTCAGG 61.151 72.222 0.00 0.00 39.98 3.86
188 189 2.043450 AGTCGAGCCCCTCCTCAG 60.043 66.667 0.00 0.00 0.00 3.35
189 190 2.043852 GAGTCGAGCCCCTCCTCA 60.044 66.667 0.00 0.00 0.00 3.86
190 191 2.835895 GGAGTCGAGCCCCTCCTC 60.836 72.222 11.55 1.06 43.29 3.71
191 192 3.670629 CTGGAGTCGAGCCCCTCCT 62.671 68.421 17.79 0.00 46.17 3.69
192 193 3.151022 CTGGAGTCGAGCCCCTCC 61.151 72.222 11.85 11.85 46.20 4.30
193 194 3.844090 GCTGGAGTCGAGCCCCTC 61.844 72.222 15.71 0.00 0.00 4.30
198 199 1.599606 TTCTCTGGCTGGAGTCGAGC 61.600 60.000 18.05 18.05 35.11 5.03
199 200 0.455410 CTTCTCTGGCTGGAGTCGAG 59.545 60.000 0.00 0.00 35.11 4.04
200 201 1.599606 GCTTCTCTGGCTGGAGTCGA 61.600 60.000 7.64 0.00 35.11 4.20
201 202 1.153667 GCTTCTCTGGCTGGAGTCG 60.154 63.158 7.64 0.00 35.11 4.18
202 203 0.175531 GAGCTTCTCTGGCTGGAGTC 59.824 60.000 0.00 0.00 40.40 3.36
203 204 1.603236 CGAGCTTCTCTGGCTGGAGT 61.603 60.000 0.00 0.00 40.40 3.85
204 205 1.141449 CGAGCTTCTCTGGCTGGAG 59.859 63.158 0.00 2.49 40.40 3.86
205 206 3.011635 GCGAGCTTCTCTGGCTGGA 62.012 63.158 0.00 0.00 42.41 3.86
206 207 2.511145 GCGAGCTTCTCTGGCTGG 60.511 66.667 0.00 0.00 42.41 4.85
207 208 2.884685 CGCGAGCTTCTCTGGCTG 60.885 66.667 0.00 0.00 43.36 4.85
208 209 3.062500 CTCGCGAGCTTCTCTGGCT 62.063 63.158 25.07 0.00 43.36 4.75
209 210 2.581953 CTCGCGAGCTTCTCTGGC 60.582 66.667 25.07 0.00 42.29 4.85
210 211 1.063972 CTCTCGCGAGCTTCTCTGG 59.936 63.158 30.97 5.49 0.00 3.86
211 212 4.688192 CTCTCGCGAGCTTCTCTG 57.312 61.111 30.97 6.30 0.00 3.35
248 249 4.247380 CCTCCATGGCCTCCTCGC 62.247 72.222 6.96 0.00 0.00 5.03
249 250 3.554342 CCCTCCATGGCCTCCTCG 61.554 72.222 6.96 0.00 0.00 4.63
250 251 2.367512 ACCCTCCATGGCCTCCTC 60.368 66.667 6.96 0.00 0.00 3.71
251 252 2.693864 CACCCTCCATGGCCTCCT 60.694 66.667 6.96 0.00 0.00 3.69
252 253 3.813724 CCACCCTCCATGGCCTCC 61.814 72.222 6.96 0.00 0.00 4.30
253 254 2.692368 TCCACCCTCCATGGCCTC 60.692 66.667 6.96 0.00 37.13 4.70
254 255 3.017581 GTCCACCCTCCATGGCCT 61.018 66.667 6.96 0.00 37.13 5.19
255 256 4.489771 CGTCCACCCTCCATGGCC 62.490 72.222 6.96 0.00 37.13 5.36
256 257 4.489771 CCGTCCACCCTCCATGGC 62.490 72.222 6.96 0.00 37.13 4.40
257 258 3.009115 ACCGTCCACCCTCCATGG 61.009 66.667 4.97 4.97 38.71 3.66
258 259 2.268920 CACCGTCCACCCTCCATG 59.731 66.667 0.00 0.00 0.00 3.66
259 260 3.009115 CCACCGTCCACCCTCCAT 61.009 66.667 0.00 0.00 0.00 3.41
322 323 2.759973 TAGCCTCCCACGCTCCTG 60.760 66.667 0.00 0.00 37.79 3.86
323 324 2.443016 CTAGCCTCCCACGCTCCT 60.443 66.667 0.00 0.00 37.79 3.69
324 325 3.541713 CCTAGCCTCCCACGCTCC 61.542 72.222 0.00 0.00 37.79 4.70
325 326 2.442272 TCCTAGCCTCCCACGCTC 60.442 66.667 0.00 0.00 37.79 5.03
326 327 2.443016 CTCCTAGCCTCCCACGCT 60.443 66.667 0.00 0.00 40.45 5.07
327 328 4.228567 GCTCCTAGCCTCCCACGC 62.229 72.222 0.00 0.00 34.48 5.34
328 329 2.136878 ATGCTCCTAGCCTCCCACG 61.137 63.158 0.00 0.00 41.51 4.94
329 330 1.449353 CATGCTCCTAGCCTCCCAC 59.551 63.158 0.00 0.00 41.51 4.61
330 331 1.767672 CCATGCTCCTAGCCTCCCA 60.768 63.158 0.00 0.00 41.51 4.37
331 332 2.524204 CCCATGCTCCTAGCCTCCC 61.524 68.421 0.00 0.00 41.51 4.30
332 333 1.460305 TCCCATGCTCCTAGCCTCC 60.460 63.158 0.00 0.00 41.51 4.30
333 334 1.479368 CCTCCCATGCTCCTAGCCTC 61.479 65.000 0.00 0.00 41.51 4.70
334 335 1.461075 CCTCCCATGCTCCTAGCCT 60.461 63.158 0.00 0.00 41.51 4.58
335 336 3.155750 CCTCCCATGCTCCTAGCC 58.844 66.667 0.00 0.00 41.51 3.93
336 337 2.394565 CTGCCTCCCATGCTCCTAGC 62.395 65.000 0.00 0.00 42.82 3.42
337 338 1.753470 CTGCCTCCCATGCTCCTAG 59.247 63.158 0.00 0.00 0.00 3.02
338 339 1.767672 CCTGCCTCCCATGCTCCTA 60.768 63.158 0.00 0.00 0.00 2.94
339 340 3.095163 CCTGCCTCCCATGCTCCT 61.095 66.667 0.00 0.00 0.00 3.69
340 341 3.092511 TCCTGCCTCCCATGCTCC 61.093 66.667 0.00 0.00 0.00 4.70
341 342 2.509916 CTCCTGCCTCCCATGCTC 59.490 66.667 0.00 0.00 0.00 4.26
342 343 3.806667 GCTCCTGCCTCCCATGCT 61.807 66.667 0.00 0.00 0.00 3.79
344 345 3.790437 ACGCTCCTGCCTCCCATG 61.790 66.667 0.00 0.00 35.36 3.66
345 346 3.790437 CACGCTCCTGCCTCCCAT 61.790 66.667 0.00 0.00 35.36 4.00
347 348 4.459089 GACACGCTCCTGCCTCCC 62.459 72.222 0.00 0.00 35.36 4.30
348 349 3.240134 TTGACACGCTCCTGCCTCC 62.240 63.158 0.00 0.00 35.36 4.30
349 350 2.029844 GTTGACACGCTCCTGCCTC 61.030 63.158 0.00 0.00 35.36 4.70
350 351 2.031163 GTTGACACGCTCCTGCCT 59.969 61.111 0.00 0.00 35.36 4.75
351 352 0.391130 TATGTTGACACGCTCCTGCC 60.391 55.000 0.00 0.00 35.36 4.85
352 353 0.721718 GTATGTTGACACGCTCCTGC 59.278 55.000 0.00 0.00 0.00 4.85
353 354 1.726791 GTGTATGTTGACACGCTCCTG 59.273 52.381 0.00 0.00 40.33 3.86
354 355 2.080286 GTGTATGTTGACACGCTCCT 57.920 50.000 0.00 0.00 40.33 3.69
399 400 9.478238 TCACACTTATGTTACTACCCACTATAA 57.522 33.333 0.00 0.00 36.72 0.98
400 401 9.650714 ATCACACTTATGTTACTACCCACTATA 57.349 33.333 0.00 0.00 36.72 1.31
401 402 7.966339 TCACACTTATGTTACTACCCACTAT 57.034 36.000 0.00 0.00 36.72 2.12
402 403 7.398047 ACATCACACTTATGTTACTACCCACTA 59.602 37.037 0.00 0.00 36.72 2.74
403 404 6.212791 ACATCACACTTATGTTACTACCCACT 59.787 38.462 0.00 0.00 36.72 4.00
404 405 6.403878 ACATCACACTTATGTTACTACCCAC 58.596 40.000 0.00 0.00 36.72 4.61
405 406 6.211785 TGACATCACACTTATGTTACTACCCA 59.788 38.462 0.00 0.00 37.69 4.51
406 407 6.636705 TGACATCACACTTATGTTACTACCC 58.363 40.000 0.00 0.00 37.69 3.69
407 408 9.464714 CTATGACATCACACTTATGTTACTACC 57.535 37.037 0.00 0.00 37.69 3.18
412 413 9.098355 GCTTTCTATGACATCACACTTATGTTA 57.902 33.333 0.00 0.00 37.69 2.41
413 414 7.826252 AGCTTTCTATGACATCACACTTATGTT 59.174 33.333 0.00 0.00 37.69 2.71
414 415 7.334090 AGCTTTCTATGACATCACACTTATGT 58.666 34.615 0.00 0.00 40.23 2.29
415 416 7.783090 AGCTTTCTATGACATCACACTTATG 57.217 36.000 0.00 0.00 0.00 1.90
416 417 8.043113 TGAAGCTTTCTATGACATCACACTTAT 58.957 33.333 0.00 0.00 0.00 1.73
417 418 7.386059 TGAAGCTTTCTATGACATCACACTTA 58.614 34.615 0.00 0.00 0.00 2.24
418 419 6.233434 TGAAGCTTTCTATGACATCACACTT 58.767 36.000 0.00 0.00 0.00 3.16
419 420 5.798132 TGAAGCTTTCTATGACATCACACT 58.202 37.500 0.00 0.00 0.00 3.55
420 421 6.674694 ATGAAGCTTTCTATGACATCACAC 57.325 37.500 0.00 0.00 0.00 3.82
421 422 7.692460 AAATGAAGCTTTCTATGACATCACA 57.308 32.000 0.00 0.00 0.00 3.58
426 427 9.905713 ACCTAATAAATGAAGCTTTCTATGACA 57.094 29.630 0.00 0.00 0.00 3.58
447 448 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
448 449 8.321353 CCCAATGCAATATGAGTCTATAACCTA 58.679 37.037 0.00 0.00 0.00 3.08
449 450 7.017551 TCCCAATGCAATATGAGTCTATAACCT 59.982 37.037 0.00 0.00 0.00 3.50
450 451 7.119846 GTCCCAATGCAATATGAGTCTATAACC 59.880 40.741 0.00 0.00 0.00 2.85
451 452 7.661437 TGTCCCAATGCAATATGAGTCTATAAC 59.339 37.037 0.00 0.00 0.00 1.89
452 453 7.744733 TGTCCCAATGCAATATGAGTCTATAA 58.255 34.615 0.00 0.00 0.00 0.98
453 454 7.315066 TGTCCCAATGCAATATGAGTCTATA 57.685 36.000 0.00 0.00 0.00 1.31
454 455 6.191657 TGTCCCAATGCAATATGAGTCTAT 57.808 37.500 0.00 0.00 0.00 1.98
455 456 5.455183 CCTGTCCCAATGCAATATGAGTCTA 60.455 44.000 0.00 0.00 0.00 2.59
456 457 4.458397 CTGTCCCAATGCAATATGAGTCT 58.542 43.478 0.00 0.00 0.00 3.24
457 458 3.567164 CCTGTCCCAATGCAATATGAGTC 59.433 47.826 0.00 0.00 0.00 3.36
458 459 3.053395 ACCTGTCCCAATGCAATATGAGT 60.053 43.478 0.00 0.00 0.00 3.41
459 460 3.317149 CACCTGTCCCAATGCAATATGAG 59.683 47.826 0.00 0.00 0.00 2.90
460 461 3.053768 TCACCTGTCCCAATGCAATATGA 60.054 43.478 0.00 0.00 0.00 2.15
461 462 3.289836 TCACCTGTCCCAATGCAATATG 58.710 45.455 0.00 0.00 0.00 1.78
462 463 3.668141 TCACCTGTCCCAATGCAATAT 57.332 42.857 0.00 0.00 0.00 1.28
463 464 3.289836 CATCACCTGTCCCAATGCAATA 58.710 45.455 0.00 0.00 0.00 1.90
464 465 2.104967 CATCACCTGTCCCAATGCAAT 58.895 47.619 0.00 0.00 0.00 3.56
465 466 1.203038 ACATCACCTGTCCCAATGCAA 60.203 47.619 0.00 0.00 29.94 4.08
466 467 0.405198 ACATCACCTGTCCCAATGCA 59.595 50.000 0.00 0.00 29.94 3.96
467 468 1.203052 CAACATCACCTGTCCCAATGC 59.797 52.381 0.00 0.00 36.98 3.56
468 469 1.203052 GCAACATCACCTGTCCCAATG 59.797 52.381 0.00 0.00 36.98 2.82
469 470 1.549203 GCAACATCACCTGTCCCAAT 58.451 50.000 0.00 0.00 36.98 3.16
470 471 0.539438 GGCAACATCACCTGTCCCAA 60.539 55.000 0.00 0.00 36.98 4.12
471 472 1.074775 GGCAACATCACCTGTCCCA 59.925 57.895 0.00 0.00 36.98 4.37
472 473 2.040544 CGGCAACATCACCTGTCCC 61.041 63.158 0.00 0.00 36.98 4.46
473 474 0.036765 TACGGCAACATCACCTGTCC 60.037 55.000 0.00 0.00 36.98 4.02
474 475 1.463444 GTTACGGCAACATCACCTGTC 59.537 52.381 0.00 0.00 36.98 3.51
475 476 1.071699 AGTTACGGCAACATCACCTGT 59.928 47.619 5.16 0.00 39.81 4.00
476 477 1.808411 AGTTACGGCAACATCACCTG 58.192 50.000 5.16 0.00 39.81 4.00
477 478 2.677037 GCTAGTTACGGCAACATCACCT 60.677 50.000 5.16 0.00 39.81 4.00
478 479 1.664151 GCTAGTTACGGCAACATCACC 59.336 52.381 5.16 0.00 39.81 4.02
479 480 2.618053 AGCTAGTTACGGCAACATCAC 58.382 47.619 5.16 0.00 39.81 3.06
480 481 4.081862 ACTTAGCTAGTTACGGCAACATCA 60.082 41.667 0.00 0.00 39.81 3.07
481 482 4.430908 ACTTAGCTAGTTACGGCAACATC 58.569 43.478 0.00 0.00 39.81 3.06
482 483 4.467198 ACTTAGCTAGTTACGGCAACAT 57.533 40.909 0.00 0.00 39.81 2.71
483 484 3.947910 ACTTAGCTAGTTACGGCAACA 57.052 42.857 0.00 0.00 39.81 3.33
491 492 8.547173 AGGTAGTCTGAGTAACTTAGCTAGTTA 58.453 37.037 4.22 10.09 45.22 2.24
493 494 6.961042 AGGTAGTCTGAGTAACTTAGCTAGT 58.039 40.000 4.22 0.00 39.32 2.57
494 495 7.277396 AGAGGTAGTCTGAGTAACTTAGCTAG 58.723 42.308 11.22 0.00 32.57 3.42
495 496 7.126115 AGAGAGGTAGTCTGAGTAACTTAGCTA 59.874 40.741 11.22 0.00 34.71 3.32
496 497 6.069705 AGAGGTAGTCTGAGTAACTTAGCT 57.930 41.667 11.22 2.09 32.57 3.32
497 498 6.117488 AGAGAGGTAGTCTGAGTAACTTAGC 58.883 44.000 11.22 4.79 34.71 3.09
498 499 7.562135 AGAGAGAGGTAGTCTGAGTAACTTAG 58.438 42.308 11.22 0.00 34.71 2.18
499 500 7.499200 AGAGAGAGGTAGTCTGAGTAACTTA 57.501 40.000 11.22 0.00 34.71 2.24
500 501 6.382919 AGAGAGAGGTAGTCTGAGTAACTT 57.617 41.667 11.22 2.50 34.71 2.66
501 502 6.013206 TGAAGAGAGAGGTAGTCTGAGTAACT 60.013 42.308 9.79 9.79 34.71 2.24
502 503 6.174760 TGAAGAGAGAGGTAGTCTGAGTAAC 58.825 44.000 0.00 0.00 34.71 2.50
503 504 6.375830 TGAAGAGAGAGGTAGTCTGAGTAA 57.624 41.667 0.00 0.00 34.71 2.24
504 505 6.569127 ATGAAGAGAGAGGTAGTCTGAGTA 57.431 41.667 0.00 0.00 34.71 2.59
505 506 4.919774 TGAAGAGAGAGGTAGTCTGAGT 57.080 45.455 0.00 0.00 34.71 3.41
506 507 7.556275 AGTTAATGAAGAGAGAGGTAGTCTGAG 59.444 40.741 0.00 0.00 34.71 3.35
507 508 7.406916 AGTTAATGAAGAGAGAGGTAGTCTGA 58.593 38.462 0.00 0.00 34.71 3.27
508 509 7.338196 TGAGTTAATGAAGAGAGAGGTAGTCTG 59.662 40.741 0.00 0.00 34.71 3.51
509 510 7.406916 TGAGTTAATGAAGAGAGAGGTAGTCT 58.593 38.462 0.00 0.00 38.71 3.24
510 511 7.633193 TGAGTTAATGAAGAGAGAGGTAGTC 57.367 40.000 0.00 0.00 0.00 2.59
511 512 8.474025 CAATGAGTTAATGAAGAGAGAGGTAGT 58.526 37.037 0.00 0.00 0.00 2.73
512 513 7.437862 GCAATGAGTTAATGAAGAGAGAGGTAG 59.562 40.741 0.00 0.00 0.00 3.18
513 514 7.268586 GCAATGAGTTAATGAAGAGAGAGGTA 58.731 38.462 0.00 0.00 0.00 3.08
514 515 6.112058 GCAATGAGTTAATGAAGAGAGAGGT 58.888 40.000 0.00 0.00 0.00 3.85
515 516 5.526846 GGCAATGAGTTAATGAAGAGAGAGG 59.473 44.000 0.00 0.00 0.00 3.69
516 517 6.036953 GTGGCAATGAGTTAATGAAGAGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
517 518 5.877012 GTGGCAATGAGTTAATGAAGAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
518 519 5.645067 TGTGGCAATGAGTTAATGAAGAGAG 59.355 40.000 0.00 0.00 0.00 3.20
519 520 5.559770 TGTGGCAATGAGTTAATGAAGAGA 58.440 37.500 0.00 0.00 0.00 3.10
520 521 5.885230 TGTGGCAATGAGTTAATGAAGAG 57.115 39.130 0.00 0.00 0.00 2.85
521 522 7.936496 TTATGTGGCAATGAGTTAATGAAGA 57.064 32.000 0.00 0.00 0.00 2.87
529 530 8.667463 GCAAATTTATTTATGTGGCAATGAGTT 58.333 29.630 0.00 0.00 0.00 3.01
530 531 8.042515 AGCAAATTTATTTATGTGGCAATGAGT 58.957 29.630 0.00 0.00 0.00 3.41
531 532 8.332464 CAGCAAATTTATTTATGTGGCAATGAG 58.668 33.333 0.00 0.00 0.00 2.90
532 533 8.039538 TCAGCAAATTTATTTATGTGGCAATGA 58.960 29.630 0.00 0.00 0.00 2.57
533 534 8.199176 TCAGCAAATTTATTTATGTGGCAATG 57.801 30.769 0.00 0.00 0.00 2.82
534 535 8.042515 ACTCAGCAAATTTATTTATGTGGCAAT 58.957 29.630 0.00 0.00 0.00 3.56
535 536 7.385267 ACTCAGCAAATTTATTTATGTGGCAA 58.615 30.769 0.00 0.00 0.00 4.52
536 537 6.934056 ACTCAGCAAATTTATTTATGTGGCA 58.066 32.000 0.00 0.00 0.00 4.92
537 538 7.201548 CCAACTCAGCAAATTTATTTATGTGGC 60.202 37.037 0.00 0.00 0.00 5.01
538 539 7.278424 CCCAACTCAGCAAATTTATTTATGTGG 59.722 37.037 0.00 0.00 0.00 4.17
539 540 7.201548 GCCCAACTCAGCAAATTTATTTATGTG 60.202 37.037 0.00 0.00 0.00 3.21
540 541 6.818142 GCCCAACTCAGCAAATTTATTTATGT 59.182 34.615 0.00 0.00 0.00 2.29
541 542 7.043565 AGCCCAACTCAGCAAATTTATTTATG 58.956 34.615 0.00 0.00 0.00 1.90
542 543 7.186570 AGCCCAACTCAGCAAATTTATTTAT 57.813 32.000 0.00 0.00 0.00 1.40
543 544 6.603940 AGCCCAACTCAGCAAATTTATTTA 57.396 33.333 0.00 0.00 0.00 1.40
544 545 5.482006 GAGCCCAACTCAGCAAATTTATTT 58.518 37.500 0.00 0.00 45.49 1.40
545 546 4.380867 CGAGCCCAACTCAGCAAATTTATT 60.381 41.667 0.00 0.00 46.63 1.40
546 547 3.129287 CGAGCCCAACTCAGCAAATTTAT 59.871 43.478 0.00 0.00 46.63 1.40
547 548 2.487762 CGAGCCCAACTCAGCAAATTTA 59.512 45.455 0.00 0.00 46.63 1.40
548 549 1.270550 CGAGCCCAACTCAGCAAATTT 59.729 47.619 0.00 0.00 46.63 1.82
549 550 0.883833 CGAGCCCAACTCAGCAAATT 59.116 50.000 0.00 0.00 46.63 1.82
550 551 0.036732 TCGAGCCCAACTCAGCAAAT 59.963 50.000 0.00 0.00 46.63 2.32
551 552 0.884704 GTCGAGCCCAACTCAGCAAA 60.885 55.000 0.00 0.00 46.63 3.68
552 553 1.301716 GTCGAGCCCAACTCAGCAA 60.302 57.895 0.00 0.00 46.63 3.91
553 554 2.343758 GTCGAGCCCAACTCAGCA 59.656 61.111 0.00 0.00 46.63 4.41
554 555 2.811317 CGTCGAGCCCAACTCAGC 60.811 66.667 0.00 0.00 46.63 4.26
555 556 0.242825 TAACGTCGAGCCCAACTCAG 59.757 55.000 0.00 0.00 46.63 3.35
556 557 0.242825 CTAACGTCGAGCCCAACTCA 59.757 55.000 0.00 0.00 46.63 3.41
557 558 0.243095 ACTAACGTCGAGCCCAACTC 59.757 55.000 0.00 0.00 42.47 3.01
558 559 1.538047 TACTAACGTCGAGCCCAACT 58.462 50.000 0.00 0.00 0.00 3.16
559 560 2.159338 TGATACTAACGTCGAGCCCAAC 60.159 50.000 0.00 0.00 0.00 3.77
560 561 2.093890 TGATACTAACGTCGAGCCCAA 58.906 47.619 0.00 0.00 0.00 4.12
561 562 1.753930 TGATACTAACGTCGAGCCCA 58.246 50.000 0.00 0.00 0.00 5.36
562 563 2.857592 TTGATACTAACGTCGAGCCC 57.142 50.000 0.00 0.00 0.00 5.19
563 564 3.767278 ACTTTGATACTAACGTCGAGCC 58.233 45.455 0.00 0.00 0.00 4.70
564 565 6.026513 AGTAACTTTGATACTAACGTCGAGC 58.973 40.000 0.00 0.00 31.96 5.03
565 566 6.686253 GGAGTAACTTTGATACTAACGTCGAG 59.314 42.308 0.00 0.00 33.85 4.04
566 567 6.403636 GGGAGTAACTTTGATACTAACGTCGA 60.404 42.308 0.00 0.00 33.85 4.20
567 568 5.741040 GGGAGTAACTTTGATACTAACGTCG 59.259 44.000 0.00 0.00 33.85 5.12
568 569 6.624423 TGGGAGTAACTTTGATACTAACGTC 58.376 40.000 0.00 0.00 33.85 4.34
569 570 6.594788 TGGGAGTAACTTTGATACTAACGT 57.405 37.500 0.00 0.00 33.85 3.99
570 571 9.760077 ATAATGGGAGTAACTTTGATACTAACG 57.240 33.333 0.00 0.00 33.85 3.18
573 574 8.154856 GCCATAATGGGAGTAACTTTGATACTA 58.845 37.037 0.00 0.00 38.19 1.82
574 575 6.998673 GCCATAATGGGAGTAACTTTGATACT 59.001 38.462 0.00 0.00 38.19 2.12
575 576 6.998673 AGCCATAATGGGAGTAACTTTGATAC 59.001 38.462 0.00 0.00 38.19 2.24
576 577 7.149202 AGCCATAATGGGAGTAACTTTGATA 57.851 36.000 0.00 0.00 38.19 2.15
577 578 6.018433 AGCCATAATGGGAGTAACTTTGAT 57.982 37.500 0.00 0.00 38.19 2.57
578 579 5.450818 AGCCATAATGGGAGTAACTTTGA 57.549 39.130 0.00 0.00 38.19 2.69
579 580 6.357367 ACTAGCCATAATGGGAGTAACTTTG 58.643 40.000 0.00 0.00 38.19 2.77
580 581 6.387220 AGACTAGCCATAATGGGAGTAACTTT 59.613 38.462 0.00 0.00 38.19 2.66
581 582 5.905913 AGACTAGCCATAATGGGAGTAACTT 59.094 40.000 0.00 0.00 38.19 2.66
582 583 5.468658 AGACTAGCCATAATGGGAGTAACT 58.531 41.667 0.00 0.00 38.19 2.24
583 584 5.810080 AGACTAGCCATAATGGGAGTAAC 57.190 43.478 0.00 0.00 38.19 2.50
584 585 7.512746 ACATAAGACTAGCCATAATGGGAGTAA 59.487 37.037 0.00 0.00 38.19 2.24
585 586 7.016914 ACATAAGACTAGCCATAATGGGAGTA 58.983 38.462 0.00 0.00 38.19 2.59
586 587 5.846714 ACATAAGACTAGCCATAATGGGAGT 59.153 40.000 0.00 0.00 38.19 3.85
587 588 6.169094 CACATAAGACTAGCCATAATGGGAG 58.831 44.000 0.00 0.00 38.19 4.30
588 589 5.513094 GCACATAAGACTAGCCATAATGGGA 60.513 44.000 0.00 0.00 38.19 4.37
589 590 4.697352 GCACATAAGACTAGCCATAATGGG 59.303 45.833 0.00 0.00 38.19 4.00
590 591 5.555017 AGCACATAAGACTAGCCATAATGG 58.445 41.667 0.00 0.00 41.55 3.16
591 592 6.368243 CAGAGCACATAAGACTAGCCATAATG 59.632 42.308 0.00 0.00 0.00 1.90
592 593 6.462500 CAGAGCACATAAGACTAGCCATAAT 58.538 40.000 0.00 0.00 0.00 1.28
593 594 5.221521 CCAGAGCACATAAGACTAGCCATAA 60.222 44.000 0.00 0.00 0.00 1.90
594 595 4.281941 CCAGAGCACATAAGACTAGCCATA 59.718 45.833 0.00 0.00 0.00 2.74
595 596 3.070734 CCAGAGCACATAAGACTAGCCAT 59.929 47.826 0.00 0.00 0.00 4.40
596 597 2.432146 CCAGAGCACATAAGACTAGCCA 59.568 50.000 0.00 0.00 0.00 4.75
597 598 2.432510 ACCAGAGCACATAAGACTAGCC 59.567 50.000 0.00 0.00 0.00 3.93
598 599 3.452474 CACCAGAGCACATAAGACTAGC 58.548 50.000 0.00 0.00 0.00 3.42
599 600 3.701542 TCCACCAGAGCACATAAGACTAG 59.298 47.826 0.00 0.00 0.00 2.57
600 601 3.708451 TCCACCAGAGCACATAAGACTA 58.292 45.455 0.00 0.00 0.00 2.59
601 602 2.540383 TCCACCAGAGCACATAAGACT 58.460 47.619 0.00 0.00 0.00 3.24
602 603 3.265791 CTTCCACCAGAGCACATAAGAC 58.734 50.000 0.00 0.00 0.00 3.01
603 604 2.237143 CCTTCCACCAGAGCACATAAGA 59.763 50.000 0.00 0.00 0.00 2.10
604 605 2.237143 TCCTTCCACCAGAGCACATAAG 59.763 50.000 0.00 0.00 0.00 1.73
605 606 2.027192 GTCCTTCCACCAGAGCACATAA 60.027 50.000 0.00 0.00 0.00 1.90
606 607 1.555075 GTCCTTCCACCAGAGCACATA 59.445 52.381 0.00 0.00 0.00 2.29
607 608 0.326264 GTCCTTCCACCAGAGCACAT 59.674 55.000 0.00 0.00 0.00 3.21
608 609 1.754745 GTCCTTCCACCAGAGCACA 59.245 57.895 0.00 0.00 0.00 4.57
609 610 1.003233 GGTCCTTCCACCAGAGCAC 60.003 63.158 0.00 0.00 36.32 4.40
610 611 1.461268 TGGTCCTTCCACCAGAGCA 60.461 57.895 0.00 0.00 41.84 4.26
611 612 3.483587 TGGTCCTTCCACCAGAGC 58.516 61.111 0.00 0.00 41.84 4.09
618 619 3.249189 AGGCGCTTGGTCCTTCCA 61.249 61.111 7.64 0.00 45.60 3.53
619 620 2.747855 CAGGCGCTTGGTCCTTCC 60.748 66.667 12.39 0.00 0.00 3.46
620 621 0.678048 ATTCAGGCGCTTGGTCCTTC 60.678 55.000 20.24 0.00 0.00 3.46
621 622 0.251341 AATTCAGGCGCTTGGTCCTT 60.251 50.000 20.24 5.43 0.00 3.36
622 623 0.251341 AAATTCAGGCGCTTGGTCCT 60.251 50.000 20.24 0.00 0.00 3.85
623 624 0.109132 CAAATTCAGGCGCTTGGTCC 60.109 55.000 20.24 0.00 0.00 4.46
624 625 0.598065 ACAAATTCAGGCGCTTGGTC 59.402 50.000 20.24 0.00 0.00 4.02
625 626 1.904287 TACAAATTCAGGCGCTTGGT 58.096 45.000 20.24 11.32 0.00 3.67
626 627 2.164219 ACATACAAATTCAGGCGCTTGG 59.836 45.455 20.24 5.41 0.00 3.61
627 628 3.119884 TCACATACAAATTCAGGCGCTTG 60.120 43.478 14.22 14.22 0.00 4.01
628 629 3.081061 TCACATACAAATTCAGGCGCTT 58.919 40.909 7.64 0.00 0.00 4.68
629 630 2.420022 GTCACATACAAATTCAGGCGCT 59.580 45.455 7.64 0.00 0.00 5.92
630 631 2.420022 AGTCACATACAAATTCAGGCGC 59.580 45.455 0.00 0.00 0.00 6.53
631 632 3.242091 CGAGTCACATACAAATTCAGGCG 60.242 47.826 0.00 0.00 0.00 5.52
632 633 3.063997 CCGAGTCACATACAAATTCAGGC 59.936 47.826 0.00 0.00 0.00 4.85
633 634 4.253685 ACCGAGTCACATACAAATTCAGG 58.746 43.478 0.00 0.00 0.00 3.86
634 635 5.621422 CAACCGAGTCACATACAAATTCAG 58.379 41.667 0.00 0.00 0.00 3.02
635 636 4.083537 GCAACCGAGTCACATACAAATTCA 60.084 41.667 0.00 0.00 0.00 2.57
636 637 4.403453 GCAACCGAGTCACATACAAATTC 58.597 43.478 0.00 0.00 0.00 2.17
637 638 3.190535 GGCAACCGAGTCACATACAAATT 59.809 43.478 0.00 0.00 0.00 1.82
638 639 2.747446 GGCAACCGAGTCACATACAAAT 59.253 45.455 0.00 0.00 0.00 2.32
639 640 2.147958 GGCAACCGAGTCACATACAAA 58.852 47.619 0.00 0.00 0.00 2.83
640 641 1.070914 TGGCAACCGAGTCACATACAA 59.929 47.619 0.00 0.00 0.00 2.41
641 642 0.682292 TGGCAACCGAGTCACATACA 59.318 50.000 0.00 0.00 0.00 2.29
642 643 1.359848 CTGGCAACCGAGTCACATAC 58.640 55.000 0.00 0.00 0.00 2.39
643 644 0.391130 GCTGGCAACCGAGTCACATA 60.391 55.000 0.00 0.00 0.00 2.29
644 645 1.672356 GCTGGCAACCGAGTCACAT 60.672 57.895 0.00 0.00 0.00 3.21
645 646 1.468506 TAGCTGGCAACCGAGTCACA 61.469 55.000 0.00 0.00 0.00 3.58
646 647 0.108138 ATAGCTGGCAACCGAGTCAC 60.108 55.000 0.00 0.00 0.00 3.67
647 648 0.613260 AATAGCTGGCAACCGAGTCA 59.387 50.000 0.00 0.00 0.00 3.41
648 649 1.291132 GAATAGCTGGCAACCGAGTC 58.709 55.000 0.00 0.00 0.00 3.36
649 650 0.107654 GGAATAGCTGGCAACCGAGT 60.108 55.000 0.00 0.00 0.00 4.18
650 651 1.154205 CGGAATAGCTGGCAACCGAG 61.154 60.000 11.97 0.00 42.40 4.63
651 652 1.153449 CGGAATAGCTGGCAACCGA 60.153 57.895 11.97 0.00 42.40 4.69
652 653 2.823829 GCGGAATAGCTGGCAACCG 61.824 63.158 0.00 5.90 42.63 4.44
653 654 3.111038 GCGGAATAGCTGGCAACC 58.889 61.111 0.00 0.00 0.00 3.77
661 662 3.272334 CCGGCACAGCGGAATAGC 61.272 66.667 0.00 0.00 37.41 2.97
662 663 2.588877 CCCGGCACAGCGGAATAG 60.589 66.667 0.00 0.00 0.00 1.73
663 664 1.615165 TAACCCGGCACAGCGGAATA 61.615 55.000 0.00 0.00 0.00 1.75
664 665 2.472414 TTAACCCGGCACAGCGGAAT 62.472 55.000 0.00 0.00 0.00 3.01
665 666 3.179888 TTAACCCGGCACAGCGGAA 62.180 57.895 0.00 0.00 0.00 4.30
666 667 3.627952 TTAACCCGGCACAGCGGA 61.628 61.111 0.00 0.00 0.00 5.54
667 668 3.428282 GTTAACCCGGCACAGCGG 61.428 66.667 0.00 0.00 0.00 5.52
668 669 3.428282 GGTTAACCCGGCACAGCG 61.428 66.667 14.16 0.00 0.00 5.18
669 670 1.248101 ATTGGTTAACCCGGCACAGC 61.248 55.000 21.97 0.00 35.15 4.40
670 671 0.525761 CATTGGTTAACCCGGCACAG 59.474 55.000 21.97 1.51 35.15 3.66
671 672 0.896019 CCATTGGTTAACCCGGCACA 60.896 55.000 21.97 0.00 35.15 4.57
672 673 0.609681 TCCATTGGTTAACCCGGCAC 60.610 55.000 21.97 0.00 35.15 5.01
673 674 0.112606 TTCCATTGGTTAACCCGGCA 59.887 50.000 21.97 7.56 35.15 5.69
674 675 1.136110 CATTCCATTGGTTAACCCGGC 59.864 52.381 21.97 0.00 35.15 6.13
675 676 2.729194 TCATTCCATTGGTTAACCCGG 58.271 47.619 21.97 18.29 35.15 5.73
676 677 5.337578 AATTCATTCCATTGGTTAACCCG 57.662 39.130 21.97 10.17 35.15 5.28
677 678 6.597672 GGAAAATTCATTCCATTGGTTAACCC 59.402 38.462 21.97 4.73 46.70 4.11
678 679 7.609760 GGAAAATTCATTCCATTGGTTAACC 57.390 36.000 18.27 18.27 46.70 2.85
696 697 9.665719 TGTCTTTTTCTTTTAAAGCTGGAAAAT 57.334 25.926 14.76 0.00 36.32 1.82
697 698 8.931775 GTGTCTTTTTCTTTTAAAGCTGGAAAA 58.068 29.630 0.00 12.20 35.16 2.29
698 699 8.091449 TGTGTCTTTTTCTTTTAAAGCTGGAAA 58.909 29.630 0.00 0.00 33.61 3.13
699 700 7.607250 TGTGTCTTTTTCTTTTAAAGCTGGAA 58.393 30.769 0.00 0.00 33.61 3.53
700 701 7.164230 TGTGTCTTTTTCTTTTAAAGCTGGA 57.836 32.000 0.00 0.00 33.61 3.86
701 702 7.545615 ACTTGTGTCTTTTTCTTTTAAAGCTGG 59.454 33.333 0.00 0.00 33.61 4.85
702 703 8.466086 ACTTGTGTCTTTTTCTTTTAAAGCTG 57.534 30.769 0.00 0.00 33.61 4.24
703 704 9.489084 AAACTTGTGTCTTTTTCTTTTAAAGCT 57.511 25.926 0.00 0.00 33.61 3.74
704 705 9.741168 GAAACTTGTGTCTTTTTCTTTTAAAGC 57.259 29.630 0.00 0.00 33.61 3.51
707 708 9.198837 GGTGAAACTTGTGTCTTTTTCTTTTAA 57.801 29.630 0.00 0.00 36.74 1.52
708 709 8.581578 AGGTGAAACTTGTGTCTTTTTCTTTTA 58.418 29.630 0.00 0.00 36.74 1.52
709 710 7.384932 CAGGTGAAACTTGTGTCTTTTTCTTTT 59.615 33.333 0.00 0.00 39.36 2.27
710 711 6.868339 CAGGTGAAACTTGTGTCTTTTTCTTT 59.132 34.615 0.00 0.00 39.36 2.52
711 712 6.389906 CAGGTGAAACTTGTGTCTTTTTCTT 58.610 36.000 0.00 0.00 39.36 2.52
712 713 5.622233 GCAGGTGAAACTTGTGTCTTTTTCT 60.622 40.000 0.00 0.00 46.90 2.52
713 714 4.562789 GCAGGTGAAACTTGTGTCTTTTTC 59.437 41.667 0.00 0.00 46.90 2.29
714 715 4.021544 TGCAGGTGAAACTTGTGTCTTTTT 60.022 37.500 0.00 0.00 46.90 1.94
778 779 0.670854 GGACTGGAGCTCGTGGTTTC 60.671 60.000 7.83 0.00 0.00 2.78
867 868 0.179073 GTGGTGGATCAGACCGATGG 60.179 60.000 8.26 0.00 36.12 3.51
904 905 1.957186 GCACCGACGCAACTTGGTA 60.957 57.895 0.00 0.00 32.29 3.25
947 948 0.475632 TGGTGGTTGGGGATCAGAGT 60.476 55.000 0.00 0.00 0.00 3.24
951 952 1.076549 GCTTGGTGGTTGGGGATCA 59.923 57.895 0.00 0.00 0.00 2.92
952 953 1.682344 GGCTTGGTGGTTGGGGATC 60.682 63.158 0.00 0.00 0.00 3.36
1473 1487 5.391950 CCGGAATTCAGAAGTACAAACCATG 60.392 44.000 7.93 0.00 0.00 3.66
1478 1492 6.703319 TGTATCCGGAATTCAGAAGTACAAA 58.297 36.000 9.01 0.00 0.00 2.83
1486 1500 5.215252 GGATTCTGTATCCGGAATTCAGA 57.785 43.478 23.32 23.32 44.85 3.27
1536 1551 5.063944 CACATGTGCTACTAGCGAAAGAAAT 59.936 40.000 13.94 0.00 46.26 2.17
1552 1567 1.431496 GGGAAATGCAACACATGTGC 58.569 50.000 25.68 12.71 39.60 4.57
1652 1674 6.976934 TCTTCAGTGATAGTACCATGCATA 57.023 37.500 0.00 0.00 0.00 3.14
1683 1705 4.067896 ACATGCTAGTTCAAACTGACTGG 58.932 43.478 5.66 0.00 40.07 4.00
1690 1712 3.061429 GCTCGAGACATGCTAGTTCAAAC 59.939 47.826 18.75 0.00 0.00 2.93
1694 1716 1.407258 AGGCTCGAGACATGCTAGTTC 59.593 52.381 22.94 0.00 0.00 3.01
1695 1717 1.135915 CAGGCTCGAGACATGCTAGTT 59.864 52.381 22.94 0.00 0.00 2.24
1708 1730 1.153667 GCTCTCCTGTTCAGGCTCG 60.154 63.158 13.44 5.41 0.00 5.03
1709 1731 0.322975 TTGCTCTCCTGTTCAGGCTC 59.677 55.000 13.44 3.96 0.00 4.70
1729 1751 6.950041 AGTAGCACATACTACCCCGATAATTA 59.050 38.462 0.00 0.00 43.17 1.40
1737 1759 2.034305 CGTCAGTAGCACATACTACCCC 59.966 54.545 0.00 0.00 43.13 4.95
1765 1787 4.508124 GGACGAAATGATAGAGCATTCGTT 59.492 41.667 12.32 0.00 39.58 3.85
1766 1788 4.051922 GGACGAAATGATAGAGCATTCGT 58.948 43.478 11.10 11.10 40.79 3.85
1786 1808 3.774842 ATTTCCCTTGCCTATTTGGGA 57.225 42.857 0.00 0.00 46.04 4.37
1809 1831 6.302313 GCATAACACGCTTTGTAAACTTGTAG 59.698 38.462 0.00 0.00 37.51 2.74
1871 1893 5.565592 TGATCATTTTGCAGAATTACGCT 57.434 34.783 0.00 0.00 0.00 5.07
1872 1894 4.205792 GCTGATCATTTTGCAGAATTACGC 59.794 41.667 0.00 0.00 0.00 4.42
1873 1895 5.334319 TGCTGATCATTTTGCAGAATTACG 58.666 37.500 0.00 0.00 0.00 3.18
1884 1907 2.361119 AGATGCGCATGCTGATCATTTT 59.639 40.909 30.76 0.00 43.34 1.82
1894 1917 1.091771 ACTACACCAGATGCGCATGC 61.092 55.000 30.76 18.81 43.20 4.06
1895 1918 0.654160 CACTACACCAGATGCGCATG 59.346 55.000 30.76 17.57 0.00 4.06
1896 1919 0.462581 CCACTACACCAGATGCGCAT 60.463 55.000 25.66 25.66 0.00 4.73
1897 1920 1.079197 CCACTACACCAGATGCGCA 60.079 57.895 14.96 14.96 0.00 6.09
1978 2004 3.005261 TGCGCATGGTTAACAAGAAATGT 59.995 39.130 5.66 0.00 46.82 2.71
1980 2006 3.932545 TGCGCATGGTTAACAAGAAAT 57.067 38.095 5.66 0.00 0.00 2.17
1985 2011 1.203523 GGGAATGCGCATGGTTAACAA 59.796 47.619 26.09 0.00 0.00 2.83
1990 2016 1.304381 ACAGGGAATGCGCATGGTT 60.304 52.632 26.09 9.47 0.00 3.67
1991 2017 1.750399 GACAGGGAATGCGCATGGT 60.750 57.895 26.09 16.64 0.00 3.55
1999 2025 4.758674 GGACATATGACATGACAGGGAATG 59.241 45.833 10.38 5.51 0.00 2.67
2103 2313 5.209818 TGAAAAGGAGGTACTATATGGCG 57.790 43.478 0.00 0.00 41.55 5.69
2104 2314 6.827727 TCTTGAAAAGGAGGTACTATATGGC 58.172 40.000 0.00 0.00 46.24 4.40
2111 2321 8.361139 CGTCATATATCTTGAAAAGGAGGTACT 58.639 37.037 0.00 0.00 46.24 2.73
2112 2322 8.358148 TCGTCATATATCTTGAAAAGGAGGTAC 58.642 37.037 0.00 0.00 46.24 3.34
2116 2326 7.148507 GGCATCGTCATATATCTTGAAAAGGAG 60.149 40.741 0.00 0.00 46.24 3.69
2120 2330 7.602644 GGTAGGCATCGTCATATATCTTGAAAA 59.397 37.037 0.00 0.00 0.00 2.29
2121 2331 7.097192 GGTAGGCATCGTCATATATCTTGAAA 58.903 38.462 0.00 0.00 0.00 2.69
2122 2332 6.210584 TGGTAGGCATCGTCATATATCTTGAA 59.789 38.462 0.00 0.00 0.00 2.69
2123 2333 5.714806 TGGTAGGCATCGTCATATATCTTGA 59.285 40.000 0.00 0.00 0.00 3.02
2125 2335 6.605471 TTGGTAGGCATCGTCATATATCTT 57.395 37.500 0.00 0.00 0.00 2.40
2126 2336 6.605471 TTTGGTAGGCATCGTCATATATCT 57.395 37.500 0.00 0.00 0.00 1.98
2127 2337 6.183360 CGTTTTGGTAGGCATCGTCATATATC 60.183 42.308 0.00 0.00 0.00 1.63
2128 2338 5.637810 CGTTTTGGTAGGCATCGTCATATAT 59.362 40.000 0.00 0.00 0.00 0.86
2129 2339 4.986034 CGTTTTGGTAGGCATCGTCATATA 59.014 41.667 0.00 0.00 0.00 0.86
2130 2340 3.807622 CGTTTTGGTAGGCATCGTCATAT 59.192 43.478 0.00 0.00 0.00 1.78
2131 2341 3.191669 CGTTTTGGTAGGCATCGTCATA 58.808 45.455 0.00 0.00 0.00 2.15
2132 2342 2.006888 CGTTTTGGTAGGCATCGTCAT 58.993 47.619 0.00 0.00 0.00 3.06
2133 2343 1.434555 CGTTTTGGTAGGCATCGTCA 58.565 50.000 0.00 0.00 0.00 4.35
2134 2344 0.725117 CCGTTTTGGTAGGCATCGTC 59.275 55.000 0.00 0.00 0.00 4.20
2146 2356 7.038659 TCCTTTCCAAAATATATGCCGTTTTG 58.961 34.615 0.00 0.00 40.63 2.44
2149 2359 5.301805 CCTCCTTTCCAAAATATATGCCGTT 59.698 40.000 0.00 0.00 0.00 4.44
2151 2361 4.827284 ACCTCCTTTCCAAAATATATGCCG 59.173 41.667 0.00 0.00 0.00 5.69
2152 2362 7.004691 ACTACCTCCTTTCCAAAATATATGCC 58.995 38.462 0.00 0.00 0.00 4.40
2153 2363 9.000486 GTACTACCTCCTTTCCAAAATATATGC 58.000 37.037 0.00 0.00 0.00 3.14
2158 2368 9.871175 AAAAAGTACTACCTCCTTTCCAAAATA 57.129 29.630 0.00 0.00 0.00 1.40
2159 2369 8.777578 AAAAAGTACTACCTCCTTTCCAAAAT 57.222 30.769 0.00 0.00 0.00 1.82
2160 2370 9.123902 GTAAAAAGTACTACCTCCTTTCCAAAA 57.876 33.333 0.00 0.00 0.00 2.44
2168 4001 6.834107 TGCTTTGTAAAAAGTACTACCTCCT 58.166 36.000 7.23 0.00 32.52 3.69
2171 4004 7.868906 TGTTGCTTTGTAAAAAGTACTACCT 57.131 32.000 7.23 0.00 32.52 3.08
2172 4005 7.433131 GGTTGTTGCTTTGTAAAAAGTACTACC 59.567 37.037 19.71 19.71 36.45 3.18
2173 4006 7.969508 TGGTTGTTGCTTTGTAAAAAGTACTAC 59.030 33.333 7.23 11.22 32.52 2.73
2174 4007 8.053026 TGGTTGTTGCTTTGTAAAAAGTACTA 57.947 30.769 7.23 1.22 32.52 1.82
2181 4014 6.861065 TGTTTTGGTTGTTGCTTTGTAAAA 57.139 29.167 0.00 0.00 0.00 1.52
2186 4019 7.692088 TCATTTATGTTTTGGTTGTTGCTTTG 58.308 30.769 0.00 0.00 0.00 2.77
2188 4021 7.856145 TTCATTTATGTTTTGGTTGTTGCTT 57.144 28.000 0.00 0.00 0.00 3.91
2189 4022 7.856145 TTTCATTTATGTTTTGGTTGTTGCT 57.144 28.000 0.00 0.00 0.00 3.91
2191 4024 8.887717 TCCTTTTCATTTATGTTTTGGTTGTTG 58.112 29.630 0.00 0.00 0.00 3.33
2192 4025 9.454859 TTCCTTTTCATTTATGTTTTGGTTGTT 57.545 25.926 0.00 0.00 0.00 2.83
2193 4026 9.625747 ATTCCTTTTCATTTATGTTTTGGTTGT 57.374 25.926 0.00 0.00 0.00 3.32
2195 4028 9.844257 TGATTCCTTTTCATTTATGTTTTGGTT 57.156 25.926 0.00 0.00 0.00 3.67
2196 4029 9.492973 CTGATTCCTTTTCATTTATGTTTTGGT 57.507 29.630 0.00 0.00 0.00 3.67
2197 4030 9.709495 TCTGATTCCTTTTCATTTATGTTTTGG 57.291 29.630 0.00 0.00 0.00 3.28
2201 4034 8.587608 TGCTTCTGATTCCTTTTCATTTATGTT 58.412 29.630 0.00 0.00 0.00 2.71
2202 4035 8.125978 TGCTTCTGATTCCTTTTCATTTATGT 57.874 30.769 0.00 0.00 0.00 2.29
2203 4036 8.866956 GTTGCTTCTGATTCCTTTTCATTTATG 58.133 33.333 0.00 0.00 0.00 1.90
2204 4037 8.587608 TGTTGCTTCTGATTCCTTTTCATTTAT 58.412 29.630 0.00 0.00 0.00 1.40
2232 5421 6.200286 CGTGTGGCCAGTATACTTGTATTAAG 59.800 42.308 5.11 0.00 0.00 1.85
2273 5469 4.202243 ACCACACAAAAGGGAAATCACATG 60.202 41.667 0.00 0.00 0.00 3.21
2275 5471 3.370104 ACCACACAAAAGGGAAATCACA 58.630 40.909 0.00 0.00 0.00 3.58
2282 5478 4.798882 ACTGAAATACCACACAAAAGGGA 58.201 39.130 0.00 0.00 0.00 4.20
2307 5503 8.767478 AAAGCAAAGAATGAGGACAATTATTG 57.233 30.769 3.07 3.07 0.00 1.90
2433 5633 7.397761 AGTTAATTCCATCCGTCCCAAAATAAA 59.602 33.333 0.00 0.00 0.00 1.40
2445 5645 2.051334 TGGCCAGTTAATTCCATCCG 57.949 50.000 0.00 0.00 0.00 4.18
2453 5653 1.102978 GTTCCGCATGGCCAGTTAAT 58.897 50.000 13.05 0.00 34.14 1.40
2455 5655 0.958382 GTGTTCCGCATGGCCAGTTA 60.958 55.000 13.05 0.00 34.14 2.24
2461 5661 1.210155 GAGTTGTGTTCCGCATGGC 59.790 57.895 0.00 0.00 34.14 4.40
2493 5693 8.194769 TGATAGTGTTTGCTCGTTGATCTTATA 58.805 33.333 0.00 0.00 0.00 0.98
2546 5746 0.318762 AAAGACGAGGAGAAAGCGCT 59.681 50.000 2.64 2.64 0.00 5.92
2560 5760 8.514594 TCTTGACCAAAATATCACATGAAAGAC 58.485 33.333 0.00 0.00 0.00 3.01
2592 5792 1.554160 AGCCGATGATGGATGAGGATC 59.446 52.381 0.00 0.00 0.00 3.36
2601 5801 4.823989 AGGAAATAAAGAAGCCGATGATGG 59.176 41.667 0.00 0.00 0.00 3.51
2610 5810 3.065925 AGCGCATCAGGAAATAAAGAAGC 59.934 43.478 11.47 0.00 0.00 3.86
2622 5822 1.536766 TCAACAAAGAAGCGCATCAGG 59.463 47.619 15.84 6.07 0.00 3.86
2682 5882 9.454859 TTCCTTTTCATTTTATGTTTTGGTTGT 57.545 25.926 0.00 0.00 0.00 3.32
2698 5898 3.820467 TGTTGCGTCTGATTCCTTTTCAT 59.180 39.130 0.00 0.00 0.00 2.57
2714 5914 8.166706 CCACTTTAGTACTATTAAGTTGTTGCG 58.833 37.037 14.62 5.66 37.15 4.85
2731 5931 0.881118 CATTGCGTGGCCACTTTAGT 59.119 50.000 32.28 12.93 0.00 2.24
2757 6483 1.337118 AGGGAAAGCGCATGGAAAAA 58.663 45.000 11.47 0.00 0.00 1.94
2778 6530 2.613595 TCTTGACCGCAATATCACATGC 59.386 45.455 0.00 0.00 39.17 4.06
2790 6542 4.909880 GTGAACACTATTTTTCTTGACCGC 59.090 41.667 0.00 0.00 0.00 5.68
2851 6608 5.422331 TGGTTGTTGATTTGTAAGGAACCAA 59.578 36.000 0.00 0.00 38.86 3.67
2854 6611 7.835634 TTTTGGTTGTTGATTTGTAAGGAAC 57.164 32.000 0.00 0.00 0.00 3.62
2895 6653 9.032420 GTAGTAGTATTGAGTTGTTCCTTATGC 57.968 37.037 0.00 0.00 0.00 3.14
2910 6668 6.705863 AAGGTAACGGAGGTAGTAGTATTG 57.294 41.667 0.00 0.00 46.39 1.90
2972 6730 3.389925 TCGTCCCAAAATAAGTGTCGT 57.610 42.857 0.00 0.00 0.00 4.34
2990 6748 7.695869 GGTAACCAATTTACTACTCTCATCG 57.304 40.000 0.00 0.00 40.18 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.