Multiple sequence alignment - TraesCS3D01G246200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G246200 chr3D 100.000 6237 0 0 1 6237 343483520 343477284 0.000000e+00 11518
1 TraesCS3D01G246200 chr3D 98.822 934 10 1 5305 6237 64822528 64823461 0.000000e+00 1663
2 TraesCS3D01G246200 chr3B 97.385 4704 102 9 613 5305 443363016 443367709 0.000000e+00 7986
3 TraesCS3D01G246200 chr3B 83.268 257 42 1 5 261 763291467 763291722 1.050000e-57 235
4 TraesCS3D01G246200 chr3B 82.759 261 44 1 1 261 763285336 763285077 1.350000e-56 231
5 TraesCS3D01G246200 chr3B 78.857 350 66 6 2 348 68426541 68426885 4.860000e-56 230
6 TraesCS3D01G246200 chr3B 83.613 238 38 1 5308 5544 147557817 147557580 8.140000e-54 222
7 TraesCS3D01G246200 chr3B 82.500 160 27 1 5308 5466 563975262 563975421 8.430000e-29 139
8 TraesCS3D01G246200 chr3B 82.500 160 27 1 5308 5466 564010205 564010364 8.430000e-29 139
9 TraesCS3D01G246200 chr3A 97.750 4622 91 4 622 5242 459042540 459047149 0.000000e+00 7947
10 TraesCS3D01G246200 chr3A 96.957 690 21 0 5308 5997 743281041 743281730 0.000000e+00 1158
11 TraesCS3D01G246200 chr3A 98.684 152 2 0 6086 6237 743321400 743321551 2.870000e-68 270
12 TraesCS3D01G246200 chr7B 89.049 347 33 3 5 351 566015576 566015235 5.780000e-115 425
13 TraesCS3D01G246200 chr7D 89.222 334 25 4 7 340 184270572 184270250 2.090000e-109 407
14 TraesCS3D01G246200 chr7D 84.983 293 33 5 1 287 112316918 112316631 2.850000e-73 287
15 TraesCS3D01G246200 chr5B 82.979 282 45 2 7 287 583616975 583616696 1.040000e-62 252
16 TraesCS3D01G246200 chr1B 82.578 287 48 1 1 287 610043043 610042759 1.040000e-62 252
17 TraesCS3D01G246200 chr1B 84.351 262 34 3 1 262 422994455 422994709 3.730000e-62 250
18 TraesCS3D01G246200 chr1B 90.361 83 3 3 5549 5628 514187382 514187462 3.080000e-18 104
19 TraesCS3D01G246200 chr2A 85.463 227 32 1 5308 5533 713447777 713447551 1.050000e-57 235
20 TraesCS3D01G246200 chrUn 82.500 160 27 1 5308 5466 372236624 372236465 8.430000e-29 139
21 TraesCS3D01G246200 chrUn 82.500 160 27 1 5308 5466 372238511 372238352 8.430000e-29 139
22 TraesCS3D01G246200 chrUn 82.500 160 27 1 5308 5466 475192661 475192820 8.430000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G246200 chr3D 343477284 343483520 6236 True 11518 11518 100.000 1 6237 1 chr3D.!!$R1 6236
1 TraesCS3D01G246200 chr3D 64822528 64823461 933 False 1663 1663 98.822 5305 6237 1 chr3D.!!$F1 932
2 TraesCS3D01G246200 chr3B 443363016 443367709 4693 False 7986 7986 97.385 613 5305 1 chr3B.!!$F2 4692
3 TraesCS3D01G246200 chr3A 459042540 459047149 4609 False 7947 7947 97.750 622 5242 1 chr3A.!!$F1 4620
4 TraesCS3D01G246200 chr3A 743281041 743281730 689 False 1158 1158 96.957 5308 5997 1 chr3A.!!$F2 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.034896 CTCCACCACCTACACCACAC 59.965 60.0 0.00 0.00 0.00 3.82 F
531 532 0.035881 AGTCGTCTACCGGTCAGTCA 59.964 55.0 12.40 0.00 37.11 3.41 F
533 534 0.322648 TCGTCTACCGGTCAGTCAGA 59.677 55.0 12.40 4.79 37.11 3.27 F
534 535 0.447011 CGTCTACCGGTCAGTCAGAC 59.553 60.0 20.10 20.10 46.83 3.51 F
554 555 0.802607 GACAAGATCAGTCGGCCGAC 60.803 60.0 43.92 43.92 44.86 4.79 F
2308 2315 1.262417 TCAACTATGACTGCGACCCA 58.738 50.0 0.00 0.00 0.00 4.51 F
3256 3263 0.662619 CCTGCGACTTCAAGCACAAA 59.337 50.0 0.00 0.00 38.59 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 1973 8.088463 AGATCAAGTGGTAGAAAAGATCATCT 57.912 34.615 0.00 0.0 34.40 2.90 R
2308 2315 1.135112 TCGTAGACATTGCGCATCAGT 60.135 47.619 12.75 10.6 34.66 3.41 R
2464 2471 1.874345 CGTTGTACGCCTCCTGGTCT 61.874 60.000 0.00 0.0 33.65 3.85 R
3034 3041 3.648009 GATGAAGTCATCCTCCGACATC 58.352 50.000 9.74 0.0 45.24 3.06 R
3172 3179 2.659063 CCGGCTGGTGGTCATCTCA 61.659 63.158 2.29 0.0 0.00 3.27 R
4582 4589 0.755698 TGCTCCCCGGATCAGAGTAC 60.756 60.000 0.73 0.0 0.00 2.73 R
5527 5538 0.865769 CGTCCGTTTAGCAGCAAACT 59.134 50.000 14.55 0.0 36.46 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.532896 GCGACCTTCAATCACCAGA 57.467 52.632 0.00 0.00 0.00 3.86
19 20 1.363744 GCGACCTTCAATCACCAGAG 58.636 55.000 0.00 0.00 0.00 3.35
20 21 1.363744 CGACCTTCAATCACCAGAGC 58.636 55.000 0.00 0.00 0.00 4.09
21 22 1.743996 GACCTTCAATCACCAGAGCC 58.256 55.000 0.00 0.00 0.00 4.70
22 23 0.036010 ACCTTCAATCACCAGAGCCG 60.036 55.000 0.00 0.00 0.00 5.52
23 24 0.745845 CCTTCAATCACCAGAGCCGG 60.746 60.000 0.00 0.00 0.00 6.13
24 25 0.250234 CTTCAATCACCAGAGCCGGA 59.750 55.000 5.05 0.00 0.00 5.14
25 26 0.250234 TTCAATCACCAGAGCCGGAG 59.750 55.000 5.05 0.00 0.00 4.63
26 27 1.817099 CAATCACCAGAGCCGGAGC 60.817 63.158 5.05 0.00 40.32 4.70
27 28 3.036429 AATCACCAGAGCCGGAGCC 62.036 63.158 5.05 0.00 41.25 4.70
38 39 2.799371 CGGAGCCGGAGACTACAC 59.201 66.667 5.05 0.00 35.56 2.90
39 40 2.772691 CGGAGCCGGAGACTACACC 61.773 68.421 5.05 0.00 35.56 4.16
40 41 1.681327 GGAGCCGGAGACTACACCA 60.681 63.158 5.05 0.00 0.00 4.17
41 42 1.511768 GAGCCGGAGACTACACCAC 59.488 63.158 5.05 0.00 0.00 4.16
42 43 1.228769 AGCCGGAGACTACACCACA 60.229 57.895 5.05 0.00 0.00 4.17
43 44 1.080025 GCCGGAGACTACACCACAC 60.080 63.158 5.05 0.00 0.00 3.82
44 45 1.533469 GCCGGAGACTACACCACACT 61.533 60.000 5.05 0.00 0.00 3.55
45 46 0.243907 CCGGAGACTACACCACACTG 59.756 60.000 0.00 0.00 0.00 3.66
46 47 0.388649 CGGAGACTACACCACACTGC 60.389 60.000 0.00 0.00 0.00 4.40
47 48 0.037232 GGAGACTACACCACACTGCC 60.037 60.000 0.00 0.00 0.00 4.85
48 49 0.388649 GAGACTACACCACACTGCCG 60.389 60.000 0.00 0.00 0.00 5.69
49 50 1.374252 GACTACACCACACTGCCGG 60.374 63.158 0.00 0.00 0.00 6.13
50 51 1.812686 GACTACACCACACTGCCGGA 61.813 60.000 5.05 0.00 0.00 5.14
51 52 1.079819 CTACACCACACTGCCGGAG 60.080 63.158 5.05 1.84 0.00 4.63
52 53 3.234630 TACACCACACTGCCGGAGC 62.235 63.158 5.05 0.00 40.48 4.70
53 54 4.320456 CACCACACTGCCGGAGCT 62.320 66.667 5.05 0.00 40.80 4.09
54 55 3.560251 ACCACACTGCCGGAGCTT 61.560 61.111 5.05 0.00 40.80 3.74
55 56 2.743928 CCACACTGCCGGAGCTTC 60.744 66.667 5.05 0.00 40.80 3.86
56 57 2.031012 CACACTGCCGGAGCTTCA 59.969 61.111 5.05 0.00 40.80 3.02
57 58 2.031163 ACACTGCCGGAGCTTCAC 59.969 61.111 5.05 0.00 40.80 3.18
58 59 2.743928 CACTGCCGGAGCTTCACC 60.744 66.667 5.05 0.00 40.80 4.02
59 60 2.925170 ACTGCCGGAGCTTCACCT 60.925 61.111 5.05 0.00 40.80 4.00
60 61 2.125350 CTGCCGGAGCTTCACCTC 60.125 66.667 5.05 0.00 40.80 3.85
61 62 3.672295 CTGCCGGAGCTTCACCTCC 62.672 68.421 5.05 0.00 46.42 4.30
66 67 4.703703 GAGCTTCACCTCCACCAC 57.296 61.111 0.00 0.00 0.00 4.16
67 68 1.003233 GAGCTTCACCTCCACCACC 60.003 63.158 0.00 0.00 0.00 4.61
68 69 1.462238 AGCTTCACCTCCACCACCT 60.462 57.895 0.00 0.00 0.00 4.00
69 70 0.178903 AGCTTCACCTCCACCACCTA 60.179 55.000 0.00 0.00 0.00 3.08
70 71 0.036294 GCTTCACCTCCACCACCTAC 60.036 60.000 0.00 0.00 0.00 3.18
71 72 1.348064 CTTCACCTCCACCACCTACA 58.652 55.000 0.00 0.00 0.00 2.74
72 73 1.002087 CTTCACCTCCACCACCTACAC 59.998 57.143 0.00 0.00 0.00 2.90
73 74 0.834687 TCACCTCCACCACCTACACC 60.835 60.000 0.00 0.00 0.00 4.16
74 75 1.125093 CACCTCCACCACCTACACCA 61.125 60.000 0.00 0.00 0.00 4.17
75 76 1.125711 ACCTCCACCACCTACACCAC 61.126 60.000 0.00 0.00 0.00 4.16
76 77 1.125093 CCTCCACCACCTACACCACA 61.125 60.000 0.00 0.00 0.00 4.17
77 78 0.034896 CTCCACCACCTACACCACAC 59.965 60.000 0.00 0.00 0.00 3.82
78 79 0.399376 TCCACCACCTACACCACACT 60.399 55.000 0.00 0.00 0.00 3.55
79 80 0.250295 CCACCACCTACACCACACTG 60.250 60.000 0.00 0.00 0.00 3.66
80 81 0.884704 CACCACCTACACCACACTGC 60.885 60.000 0.00 0.00 0.00 4.40
81 82 1.302511 CCACCTACACCACACTGCC 60.303 63.158 0.00 0.00 0.00 4.85
82 83 1.302511 CACCTACACCACACTGCCC 60.303 63.158 0.00 0.00 0.00 5.36
83 84 2.047274 CCTACACCACACTGCCCG 60.047 66.667 0.00 0.00 0.00 6.13
84 85 2.579657 CCTACACCACACTGCCCGA 61.580 63.158 0.00 0.00 0.00 5.14
85 86 1.079819 CTACACCACACTGCCCGAG 60.080 63.158 0.00 0.00 0.00 4.63
86 87 3.234630 TACACCACACTGCCCGAGC 62.235 63.158 0.00 0.00 40.48 5.03
87 88 4.320456 CACCACACTGCCCGAGCT 62.320 66.667 0.00 0.00 40.80 4.09
88 89 2.603473 ACCACACTGCCCGAGCTA 60.603 61.111 0.00 0.00 40.80 3.32
89 90 2.125512 CCACACTGCCCGAGCTAC 60.126 66.667 0.00 0.00 40.80 3.58
90 91 2.656646 CACACTGCCCGAGCTACA 59.343 61.111 0.00 0.00 40.80 2.74
91 92 1.738099 CACACTGCCCGAGCTACAC 60.738 63.158 0.00 0.00 40.80 2.90
92 93 2.125512 CACTGCCCGAGCTACACC 60.126 66.667 0.00 0.00 40.80 4.16
93 94 2.283966 ACTGCCCGAGCTACACCT 60.284 61.111 0.00 0.00 40.80 4.00
94 95 2.352032 ACTGCCCGAGCTACACCTC 61.352 63.158 0.00 0.00 40.80 3.85
95 96 3.075005 TGCCCGAGCTACACCTCC 61.075 66.667 0.00 0.00 40.80 4.30
96 97 4.208686 GCCCGAGCTACACCTCCG 62.209 72.222 0.00 0.00 35.50 4.63
97 98 4.208686 CCCGAGCTACACCTCCGC 62.209 72.222 0.00 0.00 0.00 5.54
98 99 4.208686 CCGAGCTACACCTCCGCC 62.209 72.222 0.00 0.00 0.00 6.13
99 100 3.449227 CGAGCTACACCTCCGCCA 61.449 66.667 0.00 0.00 0.00 5.69
100 101 2.184579 GAGCTACACCTCCGCCAC 59.815 66.667 0.00 0.00 0.00 5.01
101 102 3.372554 GAGCTACACCTCCGCCACC 62.373 68.421 0.00 0.00 0.00 4.61
102 103 3.391382 GCTACACCTCCGCCACCT 61.391 66.667 0.00 0.00 0.00 4.00
103 104 2.893398 CTACACCTCCGCCACCTC 59.107 66.667 0.00 0.00 0.00 3.85
104 105 2.682494 TACACCTCCGCCACCTCC 60.682 66.667 0.00 0.00 0.00 4.30
105 106 3.533079 TACACCTCCGCCACCTCCA 62.533 63.158 0.00 0.00 0.00 3.86
106 107 4.394712 CACCTCCGCCACCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
109 110 3.775654 CTCCGCCACCTCCACCTC 61.776 72.222 0.00 0.00 0.00 3.85
112 113 4.394712 CGCCACCTCCACCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
113 114 4.035102 GCCACCTCCACCTCCACC 62.035 72.222 0.00 0.00 0.00 4.61
114 115 2.529136 CCACCTCCACCTCCACCA 60.529 66.667 0.00 0.00 0.00 4.17
115 116 2.750350 CACCTCCACCTCCACCAC 59.250 66.667 0.00 0.00 0.00 4.16
116 117 2.529389 ACCTCCACCTCCACCACC 60.529 66.667 0.00 0.00 0.00 4.61
117 118 2.529136 CCTCCACCTCCACCACCA 60.529 66.667 0.00 0.00 0.00 4.17
118 119 2.750350 CTCCACCTCCACCACCAC 59.250 66.667 0.00 0.00 0.00 4.16
119 120 2.852075 TCCACCTCCACCACCACC 60.852 66.667 0.00 0.00 0.00 4.61
120 121 3.174987 CCACCTCCACCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
121 122 2.113139 CACCTCCACCACCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
122 123 2.367648 ACCTCCACCACCACCACA 60.368 61.111 0.00 0.00 0.00 4.17
123 124 2.004120 ACCTCCACCACCACCACAA 61.004 57.895 0.00 0.00 0.00 3.33
124 125 1.528309 CCTCCACCACCACCACAAC 60.528 63.158 0.00 0.00 0.00 3.32
125 126 1.528309 CTCCACCACCACCACAACC 60.528 63.158 0.00 0.00 0.00 3.77
126 127 1.994885 CTCCACCACCACCACAACCT 61.995 60.000 0.00 0.00 0.00 3.50
127 128 1.528309 CCACCACCACCACAACCTC 60.528 63.158 0.00 0.00 0.00 3.85
128 129 1.528309 CACCACCACCACAACCTCC 60.528 63.158 0.00 0.00 0.00 4.30
129 130 2.004120 ACCACCACCACAACCTCCA 61.004 57.895 0.00 0.00 0.00 3.86
130 131 1.228245 CCACCACCACAACCTCCAG 60.228 63.158 0.00 0.00 0.00 3.86
131 132 1.898574 CACCACCACAACCTCCAGC 60.899 63.158 0.00 0.00 0.00 4.85
132 133 2.382770 ACCACCACAACCTCCAGCA 61.383 57.895 0.00 0.00 0.00 4.41
133 134 1.152777 CCACCACAACCTCCAGCAA 60.153 57.895 0.00 0.00 0.00 3.91
134 135 0.540365 CCACCACAACCTCCAGCAAT 60.540 55.000 0.00 0.00 0.00 3.56
135 136 0.599558 CACCACAACCTCCAGCAATG 59.400 55.000 0.00 0.00 0.00 2.82
136 137 0.185901 ACCACAACCTCCAGCAATGT 59.814 50.000 0.00 0.00 0.00 2.71
137 138 0.599558 CCACAACCTCCAGCAATGTG 59.400 55.000 0.00 0.00 40.72 3.21
138 139 0.038892 CACAACCTCCAGCAATGTGC 60.039 55.000 0.00 0.00 45.46 4.57
165 166 5.612725 AAAAACCTCCAAGAAAATGCTCA 57.387 34.783 0.00 0.00 0.00 4.26
166 167 4.590850 AAACCTCCAAGAAAATGCTCAC 57.409 40.909 0.00 0.00 0.00 3.51
167 168 2.519013 ACCTCCAAGAAAATGCTCACC 58.481 47.619 0.00 0.00 0.00 4.02
168 169 1.470098 CCTCCAAGAAAATGCTCACCG 59.530 52.381 0.00 0.00 0.00 4.94
169 170 0.881118 TCCAAGAAAATGCTCACCGC 59.119 50.000 0.00 0.00 39.77 5.68
170 171 0.454957 CCAAGAAAATGCTCACCGCG 60.455 55.000 0.00 0.00 43.27 6.46
171 172 0.516877 CAAGAAAATGCTCACCGCGA 59.483 50.000 8.23 0.00 43.27 5.87
172 173 0.517316 AAGAAAATGCTCACCGCGAC 59.483 50.000 8.23 0.00 43.27 5.19
173 174 1.134694 GAAAATGCTCACCGCGACC 59.865 57.895 8.23 0.00 43.27 4.79
174 175 1.573829 GAAAATGCTCACCGCGACCA 61.574 55.000 8.23 0.00 43.27 4.02
175 176 1.852067 AAAATGCTCACCGCGACCAC 61.852 55.000 8.23 0.00 43.27 4.16
176 177 4.760047 ATGCTCACCGCGACCACC 62.760 66.667 8.23 0.00 43.27 4.61
184 185 4.111016 CGCGACCACCACGAGCTA 62.111 66.667 0.00 0.00 0.00 3.32
185 186 2.506438 GCGACCACCACGAGCTAC 60.506 66.667 0.00 0.00 0.00 3.58
186 187 2.181021 CGACCACCACGAGCTACC 59.819 66.667 0.00 0.00 0.00 3.18
187 188 2.577593 GACCACCACGAGCTACCC 59.422 66.667 0.00 0.00 0.00 3.69
188 189 3.001406 ACCACCACGAGCTACCCC 61.001 66.667 0.00 0.00 0.00 4.95
189 190 3.000819 CCACCACGAGCTACCCCA 61.001 66.667 0.00 0.00 0.00 4.96
190 191 2.367202 CCACCACGAGCTACCCCAT 61.367 63.158 0.00 0.00 0.00 4.00
191 192 1.144057 CACCACGAGCTACCCCATC 59.856 63.158 0.00 0.00 0.00 3.51
192 193 1.305802 ACCACGAGCTACCCCATCA 60.306 57.895 0.00 0.00 0.00 3.07
193 194 1.330655 ACCACGAGCTACCCCATCAG 61.331 60.000 0.00 0.00 0.00 2.90
194 195 1.330655 CCACGAGCTACCCCATCAGT 61.331 60.000 0.00 0.00 0.00 3.41
195 196 1.399714 CACGAGCTACCCCATCAGTA 58.600 55.000 0.00 0.00 0.00 2.74
196 197 1.338337 CACGAGCTACCCCATCAGTAG 59.662 57.143 0.00 0.00 40.19 2.57
197 198 1.214673 ACGAGCTACCCCATCAGTAGA 59.785 52.381 2.22 0.00 39.71 2.59
198 199 2.158445 ACGAGCTACCCCATCAGTAGAT 60.158 50.000 2.22 0.00 39.71 1.98
199 200 2.894126 CGAGCTACCCCATCAGTAGATT 59.106 50.000 2.22 0.00 39.71 2.40
200 201 3.305676 CGAGCTACCCCATCAGTAGATTG 60.306 52.174 2.22 0.00 39.71 2.67
201 202 3.898123 GAGCTACCCCATCAGTAGATTGA 59.102 47.826 2.22 0.00 39.71 2.57
202 203 3.900601 AGCTACCCCATCAGTAGATTGAG 59.099 47.826 2.22 0.00 39.71 3.02
203 204 3.007398 GCTACCCCATCAGTAGATTGAGG 59.993 52.174 2.22 0.00 39.71 3.86
204 205 3.136641 ACCCCATCAGTAGATTGAGGT 57.863 47.619 0.00 0.00 30.20 3.85
205 206 3.041946 ACCCCATCAGTAGATTGAGGTC 58.958 50.000 0.00 0.00 30.20 3.85
206 207 3.310954 ACCCCATCAGTAGATTGAGGTCT 60.311 47.826 0.00 0.00 30.20 3.85
207 208 3.070734 CCCCATCAGTAGATTGAGGTCTG 59.929 52.174 0.00 0.00 30.20 3.51
208 209 3.494048 CCCATCAGTAGATTGAGGTCTGC 60.494 52.174 0.00 0.00 30.20 4.26
209 210 3.494048 CCATCAGTAGATTGAGGTCTGCC 60.494 52.174 0.00 0.00 32.04 4.85
210 211 3.387374 CATCAGTAGATTGAGGTCTGCCT 59.613 47.826 0.00 0.00 39.29 4.75
211 212 4.141756 CATCAGTAGATTGAGGTCTGCCTT 60.142 45.833 0.00 0.00 37.57 4.35
212 213 6.197173 CATCAGTAGATTGAGGTCTGCCTTG 61.197 48.000 0.00 0.00 37.57 3.61
218 219 3.710722 AGGTCTGCCTTGCCTCCG 61.711 66.667 0.00 0.00 44.18 4.63
225 226 2.668632 CCTTGCCTCCGCCAACTA 59.331 61.111 0.00 0.00 0.00 2.24
226 227 1.224592 CCTTGCCTCCGCCAACTAT 59.775 57.895 0.00 0.00 0.00 2.12
227 228 0.815615 CCTTGCCTCCGCCAACTATC 60.816 60.000 0.00 0.00 0.00 2.08
228 229 0.179000 CTTGCCTCCGCCAACTATCT 59.821 55.000 0.00 0.00 0.00 1.98
229 230 1.412710 CTTGCCTCCGCCAACTATCTA 59.587 52.381 0.00 0.00 0.00 1.98
230 231 0.750850 TGCCTCCGCCAACTATCTAC 59.249 55.000 0.00 0.00 0.00 2.59
231 232 0.750850 GCCTCCGCCAACTATCTACA 59.249 55.000 0.00 0.00 0.00 2.74
232 233 1.138266 GCCTCCGCCAACTATCTACAA 59.862 52.381 0.00 0.00 0.00 2.41
233 234 2.822764 CCTCCGCCAACTATCTACAAC 58.177 52.381 0.00 0.00 0.00 3.32
234 235 2.460918 CTCCGCCAACTATCTACAACG 58.539 52.381 0.00 0.00 0.00 4.10
235 236 0.928229 CCGCCAACTATCTACAACGC 59.072 55.000 0.00 0.00 0.00 4.84
236 237 1.635844 CGCCAACTATCTACAACGCA 58.364 50.000 0.00 0.00 0.00 5.24
237 238 2.201732 CGCCAACTATCTACAACGCAT 58.798 47.619 0.00 0.00 0.00 4.73
238 239 2.218759 CGCCAACTATCTACAACGCATC 59.781 50.000 0.00 0.00 0.00 3.91
239 240 2.544267 GCCAACTATCTACAACGCATCC 59.456 50.000 0.00 0.00 0.00 3.51
240 241 3.792401 CCAACTATCTACAACGCATCCA 58.208 45.455 0.00 0.00 0.00 3.41
241 242 3.555956 CCAACTATCTACAACGCATCCAC 59.444 47.826 0.00 0.00 0.00 4.02
242 243 3.079960 ACTATCTACAACGCATCCACG 57.920 47.619 0.00 0.00 39.50 4.94
243 244 2.223735 ACTATCTACAACGCATCCACGG 60.224 50.000 0.00 0.00 37.37 4.94
244 245 0.535335 ATCTACAACGCATCCACGGT 59.465 50.000 0.00 0.00 37.37 4.83
247 248 4.101790 CAACGCATCCACGGTGGC 62.102 66.667 22.42 9.88 46.85 5.01
248 249 4.634703 AACGCATCCACGGTGGCA 62.635 61.111 22.42 11.59 37.47 4.92
249 250 4.634703 ACGCATCCACGGTGGCAA 62.635 61.111 22.42 6.66 37.47 4.52
250 251 3.361158 CGCATCCACGGTGGCAAA 61.361 61.111 22.42 5.87 37.47 3.68
251 252 2.699768 CGCATCCACGGTGGCAAAT 61.700 57.895 22.42 8.14 37.47 2.32
252 253 1.139520 GCATCCACGGTGGCAAATC 59.860 57.895 22.42 5.74 37.47 2.17
253 254 1.429021 CATCCACGGTGGCAAATCG 59.571 57.895 22.42 2.98 37.47 3.34
254 255 1.748879 ATCCACGGTGGCAAATCGG 60.749 57.895 22.42 0.00 37.47 4.18
255 256 4.114997 CCACGGTGGCAAATCGGC 62.115 66.667 15.29 0.00 41.67 5.54
279 280 3.317603 AAAAATTGGCTCGGATTGGTG 57.682 42.857 0.00 0.00 0.00 4.17
280 281 1.923356 AAATTGGCTCGGATTGGTGT 58.077 45.000 0.00 0.00 0.00 4.16
281 282 2.799126 AATTGGCTCGGATTGGTGTA 57.201 45.000 0.00 0.00 0.00 2.90
282 283 2.038387 ATTGGCTCGGATTGGTGTAC 57.962 50.000 0.00 0.00 0.00 2.90
283 284 0.687920 TTGGCTCGGATTGGTGTACA 59.312 50.000 0.00 0.00 0.00 2.90
284 285 0.687920 TGGCTCGGATTGGTGTACAA 59.312 50.000 0.00 0.00 44.54 2.41
285 286 1.072489 TGGCTCGGATTGGTGTACAAA 59.928 47.619 0.00 0.00 43.46 2.83
286 287 2.290641 TGGCTCGGATTGGTGTACAAAT 60.291 45.455 0.00 0.00 43.46 2.32
287 288 2.097466 GGCTCGGATTGGTGTACAAATG 59.903 50.000 0.00 0.00 43.46 2.32
288 289 3.006940 GCTCGGATTGGTGTACAAATGA 58.993 45.455 0.00 0.00 43.46 2.57
289 290 3.063997 GCTCGGATTGGTGTACAAATGAG 59.936 47.826 0.00 0.69 43.46 2.90
290 291 4.503910 CTCGGATTGGTGTACAAATGAGA 58.496 43.478 0.00 0.00 43.46 3.27
291 292 4.503910 TCGGATTGGTGTACAAATGAGAG 58.496 43.478 0.00 0.00 43.46 3.20
292 293 4.020573 TCGGATTGGTGTACAAATGAGAGT 60.021 41.667 0.00 0.00 43.46 3.24
293 294 4.093408 CGGATTGGTGTACAAATGAGAGTG 59.907 45.833 0.00 0.00 43.46 3.51
294 295 5.003804 GGATTGGTGTACAAATGAGAGTGT 58.996 41.667 0.00 0.00 43.46 3.55
295 296 5.473504 GGATTGGTGTACAAATGAGAGTGTT 59.526 40.000 0.00 0.00 43.46 3.32
296 297 6.016276 GGATTGGTGTACAAATGAGAGTGTTT 60.016 38.462 0.00 0.00 43.46 2.83
297 298 6.767524 TTGGTGTACAAATGAGAGTGTTTT 57.232 33.333 0.00 0.00 35.79 2.43
298 299 6.371809 TGGTGTACAAATGAGAGTGTTTTC 57.628 37.500 0.00 0.00 0.00 2.29
299 300 6.119536 TGGTGTACAAATGAGAGTGTTTTCT 58.880 36.000 0.00 0.00 0.00 2.52
300 301 7.276658 TGGTGTACAAATGAGAGTGTTTTCTA 58.723 34.615 0.00 0.00 0.00 2.10
301 302 7.441157 TGGTGTACAAATGAGAGTGTTTTCTAG 59.559 37.037 0.00 0.00 0.00 2.43
302 303 7.441458 GGTGTACAAATGAGAGTGTTTTCTAGT 59.559 37.037 0.00 0.00 0.00 2.57
303 304 8.276325 GTGTACAAATGAGAGTGTTTTCTAGTG 58.724 37.037 0.00 0.00 0.00 2.74
304 305 6.867662 ACAAATGAGAGTGTTTTCTAGTGG 57.132 37.500 0.00 0.00 0.00 4.00
305 306 5.765182 ACAAATGAGAGTGTTTTCTAGTGGG 59.235 40.000 0.00 0.00 0.00 4.61
306 307 4.559862 ATGAGAGTGTTTTCTAGTGGGG 57.440 45.455 0.00 0.00 0.00 4.96
307 308 3.583228 TGAGAGTGTTTTCTAGTGGGGA 58.417 45.455 0.00 0.00 0.00 4.81
308 309 3.971305 TGAGAGTGTTTTCTAGTGGGGAA 59.029 43.478 0.00 0.00 0.00 3.97
309 310 4.040461 TGAGAGTGTTTTCTAGTGGGGAAG 59.960 45.833 0.00 0.00 0.00 3.46
310 311 4.232091 AGAGTGTTTTCTAGTGGGGAAGA 58.768 43.478 0.00 0.00 0.00 2.87
311 312 4.284746 AGAGTGTTTTCTAGTGGGGAAGAG 59.715 45.833 0.00 0.00 0.00 2.85
312 313 4.232091 AGTGTTTTCTAGTGGGGAAGAGA 58.768 43.478 0.00 0.00 0.00 3.10
313 314 4.658901 AGTGTTTTCTAGTGGGGAAGAGAA 59.341 41.667 0.00 0.00 0.00 2.87
314 315 4.998033 GTGTTTTCTAGTGGGGAAGAGAAG 59.002 45.833 0.00 0.00 30.03 2.85
315 316 4.041691 TGTTTTCTAGTGGGGAAGAGAAGG 59.958 45.833 0.00 0.00 30.03 3.46
316 317 3.847042 TTCTAGTGGGGAAGAGAAGGA 57.153 47.619 0.00 0.00 0.00 3.36
317 318 3.847042 TCTAGTGGGGAAGAGAAGGAA 57.153 47.619 0.00 0.00 0.00 3.36
318 319 3.442076 TCTAGTGGGGAAGAGAAGGAAC 58.558 50.000 0.00 0.00 0.00 3.62
319 320 0.977395 AGTGGGGAAGAGAAGGAACG 59.023 55.000 0.00 0.00 0.00 3.95
320 321 0.974383 GTGGGGAAGAGAAGGAACGA 59.026 55.000 0.00 0.00 0.00 3.85
321 322 1.346722 GTGGGGAAGAGAAGGAACGAA 59.653 52.381 0.00 0.00 0.00 3.85
322 323 1.623811 TGGGGAAGAGAAGGAACGAAG 59.376 52.381 0.00 0.00 0.00 3.79
323 324 1.900486 GGGGAAGAGAAGGAACGAAGA 59.100 52.381 0.00 0.00 0.00 2.87
324 325 2.302157 GGGGAAGAGAAGGAACGAAGAA 59.698 50.000 0.00 0.00 0.00 2.52
325 326 3.327626 GGGAAGAGAAGGAACGAAGAAC 58.672 50.000 0.00 0.00 0.00 3.01
326 327 3.244112 GGGAAGAGAAGGAACGAAGAACA 60.244 47.826 0.00 0.00 0.00 3.18
327 328 3.991121 GGAAGAGAAGGAACGAAGAACAG 59.009 47.826 0.00 0.00 0.00 3.16
328 329 3.669251 AGAGAAGGAACGAAGAACAGG 57.331 47.619 0.00 0.00 0.00 4.00
329 330 3.231818 AGAGAAGGAACGAAGAACAGGA 58.768 45.455 0.00 0.00 0.00 3.86
330 331 3.641906 AGAGAAGGAACGAAGAACAGGAA 59.358 43.478 0.00 0.00 0.00 3.36
331 332 3.991121 GAGAAGGAACGAAGAACAGGAAG 59.009 47.826 0.00 0.00 0.00 3.46
332 333 3.641906 AGAAGGAACGAAGAACAGGAAGA 59.358 43.478 0.00 0.00 0.00 2.87
333 334 4.101119 AGAAGGAACGAAGAACAGGAAGAA 59.899 41.667 0.00 0.00 0.00 2.52
334 335 3.729966 AGGAACGAAGAACAGGAAGAAC 58.270 45.455 0.00 0.00 0.00 3.01
335 336 3.134081 AGGAACGAAGAACAGGAAGAACA 59.866 43.478 0.00 0.00 0.00 3.18
336 337 3.495001 GGAACGAAGAACAGGAAGAACAG 59.505 47.826 0.00 0.00 0.00 3.16
337 338 4.369182 GAACGAAGAACAGGAAGAACAGA 58.631 43.478 0.00 0.00 0.00 3.41
338 339 3.983741 ACGAAGAACAGGAAGAACAGAG 58.016 45.455 0.00 0.00 0.00 3.35
339 340 3.243907 ACGAAGAACAGGAAGAACAGAGG 60.244 47.826 0.00 0.00 0.00 3.69
340 341 3.005897 CGAAGAACAGGAAGAACAGAGGA 59.994 47.826 0.00 0.00 0.00 3.71
341 342 4.501571 CGAAGAACAGGAAGAACAGAGGAA 60.502 45.833 0.00 0.00 0.00 3.36
342 343 4.615588 AGAACAGGAAGAACAGAGGAAG 57.384 45.455 0.00 0.00 0.00 3.46
343 344 4.227197 AGAACAGGAAGAACAGAGGAAGA 58.773 43.478 0.00 0.00 0.00 2.87
344 345 4.656112 AGAACAGGAAGAACAGAGGAAGAA 59.344 41.667 0.00 0.00 0.00 2.52
345 346 5.131142 AGAACAGGAAGAACAGAGGAAGAAA 59.869 40.000 0.00 0.00 0.00 2.52
346 347 5.373812 ACAGGAAGAACAGAGGAAGAAAA 57.626 39.130 0.00 0.00 0.00 2.29
347 348 5.372373 ACAGGAAGAACAGAGGAAGAAAAG 58.628 41.667 0.00 0.00 0.00 2.27
348 349 4.759183 CAGGAAGAACAGAGGAAGAAAAGG 59.241 45.833 0.00 0.00 0.00 3.11
349 350 4.075682 GGAAGAACAGAGGAAGAAAAGGG 58.924 47.826 0.00 0.00 0.00 3.95
350 351 3.797559 AGAACAGAGGAAGAAAAGGGG 57.202 47.619 0.00 0.00 0.00 4.79
351 352 2.163509 GAACAGAGGAAGAAAAGGGGC 58.836 52.381 0.00 0.00 0.00 5.80
352 353 0.405973 ACAGAGGAAGAAAAGGGGCC 59.594 55.000 0.00 0.00 0.00 5.80
353 354 0.701147 CAGAGGAAGAAAAGGGGCCT 59.299 55.000 0.84 0.00 0.00 5.19
354 355 0.701147 AGAGGAAGAAAAGGGGCCTG 59.299 55.000 0.84 0.00 0.00 4.85
355 356 0.323816 GAGGAAGAAAAGGGGCCTGG 60.324 60.000 0.84 0.00 0.00 4.45
356 357 1.984570 GGAAGAAAAGGGGCCTGGC 60.985 63.158 11.05 11.05 0.00 4.85
357 358 2.283173 AAGAAAAGGGGCCTGGCG 60.283 61.111 13.40 0.00 0.00 5.69
374 375 4.925861 GCGGGCTGCCATCCTCTC 62.926 72.222 22.05 0.00 37.76 3.20
375 376 3.473647 CGGGCTGCCATCCTCTCA 61.474 66.667 22.05 0.00 0.00 3.27
376 377 2.815945 CGGGCTGCCATCCTCTCAT 61.816 63.158 22.05 0.00 0.00 2.90
377 378 1.072852 GGGCTGCCATCCTCTCATC 59.927 63.158 22.05 0.00 0.00 2.92
378 379 1.072852 GGCTGCCATCCTCTCATCC 59.927 63.158 15.17 0.00 0.00 3.51
379 380 1.417288 GGCTGCCATCCTCTCATCCT 61.417 60.000 15.17 0.00 0.00 3.24
380 381 0.250381 GCTGCCATCCTCTCATCCTG 60.250 60.000 0.00 0.00 0.00 3.86
381 382 0.250381 CTGCCATCCTCTCATCCTGC 60.250 60.000 0.00 0.00 0.00 4.85
382 383 0.984432 TGCCATCCTCTCATCCTGCA 60.984 55.000 0.00 0.00 0.00 4.41
383 384 0.250381 GCCATCCTCTCATCCTGCAG 60.250 60.000 6.78 6.78 0.00 4.41
384 385 0.250381 CCATCCTCTCATCCTGCAGC 60.250 60.000 8.66 0.00 0.00 5.25
385 386 0.759959 CATCCTCTCATCCTGCAGCT 59.240 55.000 8.66 0.00 0.00 4.24
386 387 0.759959 ATCCTCTCATCCTGCAGCTG 59.240 55.000 10.11 10.11 0.00 4.24
387 388 1.146485 CCTCTCATCCTGCAGCTGG 59.854 63.158 17.12 12.16 0.00 4.85
388 389 1.146485 CTCTCATCCTGCAGCTGGG 59.854 63.158 17.12 9.41 0.00 4.45
389 390 2.516460 CTCATCCTGCAGCTGGGC 60.516 66.667 17.12 1.74 0.00 5.36
390 391 4.478371 TCATCCTGCAGCTGGGCG 62.478 66.667 17.12 9.55 36.28 6.13
391 392 4.478371 CATCCTGCAGCTGGGCGA 62.478 66.667 17.12 0.00 36.28 5.54
392 393 4.479993 ATCCTGCAGCTGGGCGAC 62.480 66.667 17.12 0.00 36.28 5.19
395 396 3.429141 CTGCAGCTGGGCGACAAG 61.429 66.667 17.12 0.00 36.28 3.16
398 399 4.335647 CAGCTGGGCGACAAGGGT 62.336 66.667 5.57 0.00 0.00 4.34
399 400 4.335647 AGCTGGGCGACAAGGGTG 62.336 66.667 0.00 0.00 0.00 4.61
400 401 4.643387 GCTGGGCGACAAGGGTGT 62.643 66.667 0.00 0.00 42.10 4.16
401 402 2.669569 CTGGGCGACAAGGGTGTG 60.670 66.667 0.00 0.00 38.41 3.82
402 403 3.476031 CTGGGCGACAAGGGTGTGT 62.476 63.158 0.00 0.00 38.41 3.72
403 404 2.668550 GGGCGACAAGGGTGTGTC 60.669 66.667 0.00 0.00 43.75 3.67
407 408 2.426023 GACAAGGGTGTGTCGGCT 59.574 61.111 0.00 0.00 38.68 5.52
408 409 1.961277 GACAAGGGTGTGTCGGCTG 60.961 63.158 0.00 0.00 38.68 4.85
409 410 2.669569 CAAGGGTGTGTCGGCTGG 60.670 66.667 0.00 0.00 0.00 4.85
410 411 3.953775 AAGGGTGTGTCGGCTGGG 61.954 66.667 0.00 0.00 0.00 4.45
429 430 4.096003 CCAGCCACCGACGGGAAT 62.096 66.667 20.00 0.00 36.97 3.01
430 431 2.511600 CAGCCACCGACGGGAATC 60.512 66.667 20.00 4.24 36.97 2.52
431 432 4.143333 AGCCACCGACGGGAATCG 62.143 66.667 20.00 1.21 45.88 3.34
441 442 3.640000 GGGAATCGCCGCGACATG 61.640 66.667 19.45 0.00 39.18 3.21
442 443 3.640000 GGAATCGCCGCGACATGG 61.640 66.667 19.45 0.00 39.18 3.66
443 444 2.890474 GAATCGCCGCGACATGGT 60.890 61.111 19.45 0.00 39.18 3.55
444 445 2.871427 GAATCGCCGCGACATGGTC 61.871 63.158 19.45 7.02 39.18 4.02
445 446 3.371097 AATCGCCGCGACATGGTCT 62.371 57.895 19.45 0.00 39.18 3.85
446 447 2.011741 AATCGCCGCGACATGGTCTA 62.012 55.000 19.45 0.00 39.18 2.59
447 448 2.407846 ATCGCCGCGACATGGTCTAG 62.408 60.000 19.45 0.00 39.18 2.43
448 449 2.962253 GCCGCGACATGGTCTAGC 60.962 66.667 8.23 0.00 0.00 3.42
449 450 2.279517 CCGCGACATGGTCTAGCC 60.280 66.667 8.23 0.00 37.90 3.93
457 458 3.587095 TGGTCTAGCCACTCGTCG 58.413 61.111 2.19 0.00 43.61 5.12
458 459 2.044555 TGGTCTAGCCACTCGTCGG 61.045 63.158 2.19 0.00 43.61 4.79
475 476 4.451150 GCCGCCACATGGACGAGA 62.451 66.667 13.90 0.00 37.05 4.04
476 477 2.202797 CCGCCACATGGACGAGAG 60.203 66.667 13.90 0.00 37.05 3.20
477 478 2.202797 CGCCACATGGACGAGAGG 60.203 66.667 0.87 0.00 37.05 3.69
478 479 2.512515 GCCACATGGACGAGAGGC 60.513 66.667 0.87 0.00 37.39 4.70
486 487 2.183046 GACGAGAGGCCAGCTGTC 59.817 66.667 13.81 0.00 0.00 3.51
487 488 3.691744 GACGAGAGGCCAGCTGTCG 62.692 68.421 18.76 18.76 36.71 4.35
488 489 4.504916 CGAGAGGCCAGCTGTCGG 62.505 72.222 13.81 0.00 0.00 4.79
510 511 3.028969 CGATAGGACGACGGGACC 58.971 66.667 0.00 0.00 35.09 4.46
511 512 2.550101 CGATAGGACGACGGGACCC 61.550 68.421 0.00 0.00 35.09 4.46
512 513 1.454479 GATAGGACGACGGGACCCA 60.454 63.158 12.15 0.00 0.00 4.51
513 514 1.453762 GATAGGACGACGGGACCCAG 61.454 65.000 12.15 6.07 0.00 4.45
514 515 2.220786 ATAGGACGACGGGACCCAGT 62.221 60.000 12.15 9.59 0.00 4.00
515 516 2.826777 TAGGACGACGGGACCCAGTC 62.827 65.000 19.62 19.62 0.00 3.51
519 520 2.675772 GACGGGACCCAGTCGTCT 60.676 66.667 12.15 0.00 46.49 4.18
520 521 1.377725 GACGGGACCCAGTCGTCTA 60.378 63.158 12.15 0.00 46.49 2.59
521 522 1.652167 GACGGGACCCAGTCGTCTAC 61.652 65.000 12.15 0.00 46.49 2.59
522 523 2.413142 CGGGACCCAGTCGTCTACC 61.413 68.421 12.15 0.00 32.65 3.18
523 524 2.413142 GGGACCCAGTCGTCTACCG 61.413 68.421 5.33 0.00 32.65 4.02
524 525 2.413142 GGACCCAGTCGTCTACCGG 61.413 68.421 0.00 0.00 37.11 5.28
525 526 1.676967 GACCCAGTCGTCTACCGGT 60.677 63.158 13.98 13.98 34.65 5.28
526 527 1.652167 GACCCAGTCGTCTACCGGTC 61.652 65.000 12.40 0.00 39.54 4.79
527 528 1.676635 CCCAGTCGTCTACCGGTCA 60.677 63.158 12.40 0.00 37.11 4.02
528 529 1.654954 CCCAGTCGTCTACCGGTCAG 61.655 65.000 12.40 7.61 37.11 3.51
529 530 0.959372 CCAGTCGTCTACCGGTCAGT 60.959 60.000 12.40 0.00 37.11 3.41
530 531 0.447011 CAGTCGTCTACCGGTCAGTC 59.553 60.000 12.40 4.35 37.11 3.51
531 532 0.035881 AGTCGTCTACCGGTCAGTCA 59.964 55.000 12.40 0.00 37.11 3.41
532 533 0.447011 GTCGTCTACCGGTCAGTCAG 59.553 60.000 12.40 1.60 37.11 3.51
533 534 0.322648 TCGTCTACCGGTCAGTCAGA 59.677 55.000 12.40 4.79 37.11 3.27
534 535 0.447011 CGTCTACCGGTCAGTCAGAC 59.553 60.000 20.10 20.10 46.83 3.51
544 545 3.560902 GTCAGTCAGACGACAAGATCA 57.439 47.619 16.11 0.00 45.23 2.92
545 546 3.497118 GTCAGTCAGACGACAAGATCAG 58.503 50.000 16.11 0.00 45.23 2.90
546 547 3.057876 GTCAGTCAGACGACAAGATCAGT 60.058 47.826 16.11 0.00 45.23 3.41
547 548 3.189495 TCAGTCAGACGACAAGATCAGTC 59.811 47.826 7.94 7.94 45.23 3.51
552 553 4.094684 GACAAGATCAGTCGGCCG 57.905 61.111 22.12 22.12 0.00 6.13
553 554 1.511305 GACAAGATCAGTCGGCCGA 59.489 57.895 27.28 27.28 0.00 5.54
554 555 0.802607 GACAAGATCAGTCGGCCGAC 60.803 60.000 43.92 43.92 44.86 4.79
593 594 9.921637 AAAAATCAGCGTAATATTCCTGAAAAA 57.078 25.926 13.87 0.00 37.80 1.94
665 666 3.485947 TGCACGAACCAAATGCTATTC 57.514 42.857 0.00 0.00 40.13 1.75
681 682 9.723601 AAATGCTATTCTAATTGCAAAAGGAAA 57.276 25.926 14.15 0.00 46.80 3.13
682 683 9.723601 AATGCTATTCTAATTGCAAAAGGAAAA 57.276 25.926 14.15 0.00 46.80 2.29
738 739 1.464608 CTACATGCAACCGTGAACAGG 59.535 52.381 0.00 0.00 0.00 4.00
954 956 4.944317 CCTTCTCCTGAACAAGTTAATCCC 59.056 45.833 0.00 0.00 0.00 3.85
1971 1973 1.746615 GCTCTTGCGCCTCATCCAA 60.747 57.895 4.18 0.00 0.00 3.53
2248 2255 2.423446 GCGATCGAGGGGCTCATT 59.577 61.111 21.57 0.00 0.00 2.57
2308 2315 1.262417 TCAACTATGACTGCGACCCA 58.738 50.000 0.00 0.00 0.00 4.51
2902 2909 1.849219 CAGAAGATACAGCGCGTTCTC 59.151 52.381 8.43 7.95 0.00 2.87
3034 3041 3.965888 CCCCCAGGTGAAGAAGAAG 57.034 57.895 0.00 0.00 0.00 2.85
3040 3047 3.257393 CCAGGTGAAGAAGAAGATGTCG 58.743 50.000 0.00 0.00 0.00 4.35
3256 3263 0.662619 CCTGCGACTTCAAGCACAAA 59.337 50.000 0.00 0.00 38.59 2.83
3262 3269 2.609459 CGACTTCAAGCACAAACTCAGT 59.391 45.455 0.00 0.00 0.00 3.41
3373 3380 1.965754 GCGTGGAGGGCTTGATCTCT 61.966 60.000 0.00 0.00 0.00 3.10
3776 3783 2.048127 GCCGGTTCTCGCAGTTCT 60.048 61.111 1.90 0.00 37.59 3.01
3791 3798 1.066114 GTTCTTGTCTCTCGACGGCG 61.066 60.000 2.87 2.87 43.21 6.46
3793 3800 4.415332 TTGTCTCTCGACGGCGGC 62.415 66.667 12.58 7.52 43.21 6.53
4013 4020 1.542987 GCTTCTGCTGGGATCTCATCC 60.543 57.143 0.00 0.00 41.53 3.51
4156 4163 1.221466 TTGTGCTCTTCAAGGTCGCG 61.221 55.000 0.00 0.00 0.00 5.87
4226 4233 3.519579 CTCATCTGCAAGTCGATCAACT 58.480 45.455 0.00 0.00 33.76 3.16
4582 4589 2.669569 CAGTGGCACAAGTCCGGG 60.670 66.667 21.41 0.00 44.16 5.73
4591 4598 1.825474 CACAAGTCCGGGTACTCTGAT 59.175 52.381 0.00 0.00 0.00 2.90
4837 4844 0.456142 TCAACCTCGTCATCTTCGCG 60.456 55.000 0.00 0.00 0.00 5.87
5056 5063 1.296392 CATCAAGTCCGACCTGGCA 59.704 57.895 0.00 0.00 37.80 4.92
5240 5251 0.822164 GCTGTTCCCCGAGTAGCTAA 59.178 55.000 0.00 0.00 0.00 3.09
5269 5280 8.157476 ACTAGTTCACCTCACAGAATAATGTTT 58.843 33.333 0.00 0.00 0.00 2.83
5270 5281 7.206981 AGTTCACCTCACAGAATAATGTTTG 57.793 36.000 0.00 0.00 0.00 2.93
5306 5317 9.739276 ACAACAGGAAAATTAGATTCATACTCA 57.261 29.630 0.00 0.00 0.00 3.41
5496 5507 3.923864 ACAACGCCGGCTCAGACA 61.924 61.111 26.68 0.00 0.00 3.41
5523 5534 1.024579 CGAATGTTGGGCTACGGCTT 61.025 55.000 0.00 0.00 38.73 4.35
5527 5538 0.978151 TGTTGGGCTACGGCTTAGAA 59.022 50.000 1.67 0.00 38.73 2.10
5960 5971 1.537202 GCACTCAATCTTGTTCCGCTT 59.463 47.619 0.00 0.00 0.00 4.68
6046 6057 5.457140 TGCAGCTGTAATTTAAGGAAAACG 58.543 37.500 16.64 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.363744 CTCTGGTGATTGAAGGTCGC 58.636 55.000 0.00 0.00 0.00 5.19
4 5 0.745845 CCGGCTCTGGTGATTGAAGG 60.746 60.000 0.00 0.00 0.00 3.46
5 6 0.250234 TCCGGCTCTGGTGATTGAAG 59.750 55.000 0.00 0.00 0.00 3.02
7 8 1.900351 CTCCGGCTCTGGTGATTGA 59.100 57.895 0.00 0.00 0.00 2.57
8 9 1.817099 GCTCCGGCTCTGGTGATTG 60.817 63.158 0.00 0.00 35.22 2.67
9 10 2.586792 GCTCCGGCTCTGGTGATT 59.413 61.111 0.00 0.00 35.22 2.57
10 11 3.474570 GGCTCCGGCTCTGGTGAT 61.475 66.667 0.00 0.00 38.73 3.06
21 22 2.772691 GGTGTAGTCTCCGGCTCCG 61.773 68.421 0.00 0.48 39.44 4.63
22 23 1.681327 TGGTGTAGTCTCCGGCTCC 60.681 63.158 0.00 0.00 0.00 4.70
23 24 1.248785 TGTGGTGTAGTCTCCGGCTC 61.249 60.000 0.00 0.00 0.00 4.70
24 25 1.228769 TGTGGTGTAGTCTCCGGCT 60.229 57.895 0.00 0.00 0.00 5.52
25 26 1.080025 GTGTGGTGTAGTCTCCGGC 60.080 63.158 0.00 0.00 0.00 6.13
26 27 0.243907 CAGTGTGGTGTAGTCTCCGG 59.756 60.000 0.00 0.00 0.00 5.14
27 28 0.388649 GCAGTGTGGTGTAGTCTCCG 60.389 60.000 0.00 0.00 0.00 4.63
28 29 0.037232 GGCAGTGTGGTGTAGTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
29 30 0.388649 CGGCAGTGTGGTGTAGTCTC 60.389 60.000 0.00 0.00 0.00 3.36
30 31 1.666011 CGGCAGTGTGGTGTAGTCT 59.334 57.895 0.00 0.00 0.00 3.24
31 32 1.374252 CCGGCAGTGTGGTGTAGTC 60.374 63.158 0.00 0.00 0.00 2.59
32 33 1.816863 CTCCGGCAGTGTGGTGTAGT 61.817 60.000 0.00 0.00 0.00 2.73
33 34 1.079819 CTCCGGCAGTGTGGTGTAG 60.080 63.158 0.00 0.00 0.00 2.74
34 35 3.056458 CTCCGGCAGTGTGGTGTA 58.944 61.111 0.00 0.00 0.00 2.90
35 36 4.626081 GCTCCGGCAGTGTGGTGT 62.626 66.667 0.00 0.00 38.54 4.16
36 37 3.832237 AAGCTCCGGCAGTGTGGTG 62.832 63.158 0.00 3.09 41.70 4.17
37 38 3.537206 GAAGCTCCGGCAGTGTGGT 62.537 63.158 0.00 0.00 41.70 4.16
38 39 2.743928 GAAGCTCCGGCAGTGTGG 60.744 66.667 0.00 0.00 41.70 4.17
39 40 2.031012 TGAAGCTCCGGCAGTGTG 59.969 61.111 0.00 0.00 41.70 3.82
40 41 2.031163 GTGAAGCTCCGGCAGTGT 59.969 61.111 0.00 0.00 41.70 3.55
41 42 2.743928 GGTGAAGCTCCGGCAGTG 60.744 66.667 0.00 0.00 41.70 3.66
42 43 2.925170 AGGTGAAGCTCCGGCAGT 60.925 61.111 0.00 0.00 41.70 4.40
43 44 2.125350 GAGGTGAAGCTCCGGCAG 60.125 66.667 0.00 0.00 41.70 4.85
44 45 3.706373 GGAGGTGAAGCTCCGGCA 61.706 66.667 12.50 0.00 41.70 5.69
45 46 3.706373 TGGAGGTGAAGCTCCGGC 61.706 66.667 20.52 1.54 42.42 6.13
46 47 2.266055 GTGGAGGTGAAGCTCCGG 59.734 66.667 20.52 0.00 42.42 5.14
47 48 2.266055 GGTGGAGGTGAAGCTCCG 59.734 66.667 20.52 0.00 42.42 4.63
48 49 1.003233 GTGGTGGAGGTGAAGCTCC 60.003 63.158 19.46 19.46 40.05 4.70
49 50 1.003233 GGTGGTGGAGGTGAAGCTC 60.003 63.158 0.78 0.78 0.00 4.09
50 51 0.178903 TAGGTGGTGGAGGTGAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
51 52 0.036294 GTAGGTGGTGGAGGTGAAGC 60.036 60.000 0.00 0.00 0.00 3.86
52 53 1.002087 GTGTAGGTGGTGGAGGTGAAG 59.998 57.143 0.00 0.00 0.00 3.02
53 54 1.053424 GTGTAGGTGGTGGAGGTGAA 58.947 55.000 0.00 0.00 0.00 3.18
54 55 0.834687 GGTGTAGGTGGTGGAGGTGA 60.835 60.000 0.00 0.00 0.00 4.02
55 56 1.125093 TGGTGTAGGTGGTGGAGGTG 61.125 60.000 0.00 0.00 0.00 4.00
56 57 1.125711 GTGGTGTAGGTGGTGGAGGT 61.126 60.000 0.00 0.00 0.00 3.85
57 58 1.125093 TGTGGTGTAGGTGGTGGAGG 61.125 60.000 0.00 0.00 0.00 4.30
58 59 0.034896 GTGTGGTGTAGGTGGTGGAG 59.965 60.000 0.00 0.00 0.00 3.86
59 60 0.399376 AGTGTGGTGTAGGTGGTGGA 60.399 55.000 0.00 0.00 0.00 4.02
60 61 0.250295 CAGTGTGGTGTAGGTGGTGG 60.250 60.000 0.00 0.00 0.00 4.61
61 62 0.884704 GCAGTGTGGTGTAGGTGGTG 60.885 60.000 0.00 0.00 0.00 4.17
62 63 1.450211 GCAGTGTGGTGTAGGTGGT 59.550 57.895 0.00 0.00 0.00 4.16
63 64 1.302511 GGCAGTGTGGTGTAGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
64 65 1.302511 GGGCAGTGTGGTGTAGGTG 60.303 63.158 0.00 0.00 0.00 4.00
65 66 2.879233 CGGGCAGTGTGGTGTAGGT 61.879 63.158 0.00 0.00 0.00 3.08
66 67 2.047274 CGGGCAGTGTGGTGTAGG 60.047 66.667 0.00 0.00 0.00 3.18
67 68 1.079819 CTCGGGCAGTGTGGTGTAG 60.080 63.158 0.00 0.00 0.00 2.74
68 69 3.056458 CTCGGGCAGTGTGGTGTA 58.944 61.111 0.00 0.00 0.00 2.90
69 70 4.626081 GCTCGGGCAGTGTGGTGT 62.626 66.667 0.00 0.00 38.54 4.16
70 71 2.942796 TAGCTCGGGCAGTGTGGTG 61.943 63.158 11.40 0.00 41.70 4.17
71 72 2.603473 TAGCTCGGGCAGTGTGGT 60.603 61.111 11.40 0.00 41.70 4.16
72 73 2.125512 GTAGCTCGGGCAGTGTGG 60.126 66.667 11.40 0.00 41.70 4.17
73 74 1.738099 GTGTAGCTCGGGCAGTGTG 60.738 63.158 11.40 0.00 41.70 3.82
74 75 2.657237 GTGTAGCTCGGGCAGTGT 59.343 61.111 11.40 0.00 41.70 3.55
75 76 2.125512 GGTGTAGCTCGGGCAGTG 60.126 66.667 11.40 0.00 41.70 3.66
76 77 2.283966 AGGTGTAGCTCGGGCAGT 60.284 61.111 11.40 0.00 41.70 4.40
77 78 2.496817 GAGGTGTAGCTCGGGCAG 59.503 66.667 11.40 0.00 41.70 4.85
78 79 3.075005 GGAGGTGTAGCTCGGGCA 61.075 66.667 11.40 0.00 41.70 5.36
79 80 4.208686 CGGAGGTGTAGCTCGGGC 62.209 72.222 0.00 0.00 39.06 6.13
80 81 4.208686 GCGGAGGTGTAGCTCGGG 62.209 72.222 16.77 8.08 0.00 5.14
81 82 4.208686 GGCGGAGGTGTAGCTCGG 62.209 72.222 12.51 12.51 0.00 4.63
82 83 3.449227 TGGCGGAGGTGTAGCTCG 61.449 66.667 0.00 0.00 0.00 5.03
83 84 2.184579 GTGGCGGAGGTGTAGCTC 59.815 66.667 0.00 2.57 0.00 4.09
84 85 3.391382 GGTGGCGGAGGTGTAGCT 61.391 66.667 0.00 0.00 0.00 3.32
85 86 3.372554 GAGGTGGCGGAGGTGTAGC 62.373 68.421 0.00 0.00 0.00 3.58
86 87 2.722201 GGAGGTGGCGGAGGTGTAG 61.722 68.421 0.00 0.00 0.00 2.74
87 88 2.682494 GGAGGTGGCGGAGGTGTA 60.682 66.667 0.00 0.00 0.00 2.90
88 89 4.954118 TGGAGGTGGCGGAGGTGT 62.954 66.667 0.00 0.00 0.00 4.16
89 90 4.394712 GTGGAGGTGGCGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
92 93 3.775654 GAGGTGGAGGTGGCGGAG 61.776 72.222 0.00 0.00 0.00 4.63
95 96 4.394712 GTGGAGGTGGAGGTGGCG 62.395 72.222 0.00 0.00 0.00 5.69
96 97 4.035102 GGTGGAGGTGGAGGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
97 98 2.529136 TGGTGGAGGTGGAGGTGG 60.529 66.667 0.00 0.00 0.00 4.61
98 99 2.750350 GTGGTGGAGGTGGAGGTG 59.250 66.667 0.00 0.00 0.00 4.00
99 100 2.529389 GGTGGTGGAGGTGGAGGT 60.529 66.667 0.00 0.00 0.00 3.85
100 101 2.529136 TGGTGGTGGAGGTGGAGG 60.529 66.667 0.00 0.00 0.00 4.30
101 102 2.750350 GTGGTGGTGGAGGTGGAG 59.250 66.667 0.00 0.00 0.00 3.86
102 103 2.852075 GGTGGTGGTGGAGGTGGA 60.852 66.667 0.00 0.00 0.00 4.02
103 104 3.174987 TGGTGGTGGTGGAGGTGG 61.175 66.667 0.00 0.00 0.00 4.61
104 105 2.113139 GTGGTGGTGGTGGAGGTG 59.887 66.667 0.00 0.00 0.00 4.00
105 106 2.004120 TTGTGGTGGTGGTGGAGGT 61.004 57.895 0.00 0.00 0.00 3.85
106 107 1.528309 GTTGTGGTGGTGGTGGAGG 60.528 63.158 0.00 0.00 0.00 4.30
107 108 1.528309 GGTTGTGGTGGTGGTGGAG 60.528 63.158 0.00 0.00 0.00 3.86
108 109 1.990160 GAGGTTGTGGTGGTGGTGGA 61.990 60.000 0.00 0.00 0.00 4.02
109 110 1.528309 GAGGTTGTGGTGGTGGTGG 60.528 63.158 0.00 0.00 0.00 4.61
110 111 1.528309 GGAGGTTGTGGTGGTGGTG 60.528 63.158 0.00 0.00 0.00 4.17
111 112 1.994885 CTGGAGGTTGTGGTGGTGGT 61.995 60.000 0.00 0.00 0.00 4.16
112 113 1.228245 CTGGAGGTTGTGGTGGTGG 60.228 63.158 0.00 0.00 0.00 4.61
113 114 1.898574 GCTGGAGGTTGTGGTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
114 115 1.932156 TTGCTGGAGGTTGTGGTGGT 61.932 55.000 0.00 0.00 0.00 4.16
115 116 0.540365 ATTGCTGGAGGTTGTGGTGG 60.540 55.000 0.00 0.00 0.00 4.61
116 117 0.599558 CATTGCTGGAGGTTGTGGTG 59.400 55.000 0.00 0.00 0.00 4.17
117 118 0.185901 ACATTGCTGGAGGTTGTGGT 59.814 50.000 0.00 0.00 0.00 4.16
118 119 0.599558 CACATTGCTGGAGGTTGTGG 59.400 55.000 0.00 0.00 35.25 4.17
119 120 0.038892 GCACATTGCTGGAGGTTGTG 60.039 55.000 0.00 0.00 40.96 3.33
120 121 2.344535 GCACATTGCTGGAGGTTGT 58.655 52.632 0.00 0.00 40.96 3.32
143 144 5.359756 GTGAGCATTTTCTTGGAGGTTTTT 58.640 37.500 0.00 0.00 0.00 1.94
144 145 4.202253 GGTGAGCATTTTCTTGGAGGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
145 146 3.321968 GGTGAGCATTTTCTTGGAGGTTT 59.678 43.478 0.00 0.00 0.00 3.27
146 147 2.893489 GGTGAGCATTTTCTTGGAGGTT 59.107 45.455 0.00 0.00 0.00 3.50
147 148 2.519013 GGTGAGCATTTTCTTGGAGGT 58.481 47.619 0.00 0.00 0.00 3.85
148 149 1.470098 CGGTGAGCATTTTCTTGGAGG 59.530 52.381 0.00 0.00 0.00 4.30
149 150 2.907910 CGGTGAGCATTTTCTTGGAG 57.092 50.000 0.00 0.00 0.00 3.86
168 169 2.506438 GTAGCTCGTGGTGGTCGC 60.506 66.667 0.00 0.00 0.00 5.19
169 170 2.181021 GGTAGCTCGTGGTGGTCG 59.819 66.667 0.00 0.00 0.00 4.79
170 171 2.577593 GGGTAGCTCGTGGTGGTC 59.422 66.667 0.00 0.00 0.00 4.02
171 172 3.001406 GGGGTAGCTCGTGGTGGT 61.001 66.667 0.00 0.00 0.00 4.16
172 173 2.311688 GATGGGGTAGCTCGTGGTGG 62.312 65.000 0.00 0.00 0.00 4.61
173 174 1.144057 GATGGGGTAGCTCGTGGTG 59.856 63.158 0.00 0.00 0.00 4.17
174 175 1.305802 TGATGGGGTAGCTCGTGGT 60.306 57.895 0.00 0.00 0.00 4.16
175 176 1.330655 ACTGATGGGGTAGCTCGTGG 61.331 60.000 0.00 0.00 0.00 4.94
176 177 1.338337 CTACTGATGGGGTAGCTCGTG 59.662 57.143 0.00 0.00 31.79 4.35
177 178 1.214673 TCTACTGATGGGGTAGCTCGT 59.785 52.381 0.00 0.00 37.25 4.18
178 179 1.982660 TCTACTGATGGGGTAGCTCG 58.017 55.000 0.00 0.00 37.25 5.03
179 180 3.898123 TCAATCTACTGATGGGGTAGCTC 59.102 47.826 0.00 0.00 37.25 4.09
180 181 3.900601 CTCAATCTACTGATGGGGTAGCT 59.099 47.826 0.00 0.00 37.25 3.32
181 182 3.007398 CCTCAATCTACTGATGGGGTAGC 59.993 52.174 0.00 0.00 37.25 3.58
182 183 4.227197 ACCTCAATCTACTGATGGGGTAG 58.773 47.826 0.00 0.00 34.83 3.18
183 184 4.078571 AGACCTCAATCTACTGATGGGGTA 60.079 45.833 0.00 0.00 35.89 3.69
184 185 3.041946 GACCTCAATCTACTGATGGGGT 58.958 50.000 0.00 0.00 37.32 4.95
185 186 3.070734 CAGACCTCAATCTACTGATGGGG 59.929 52.174 0.00 0.00 32.44 4.96
186 187 3.494048 GCAGACCTCAATCTACTGATGGG 60.494 52.174 0.00 0.00 32.44 4.00
187 188 3.494048 GGCAGACCTCAATCTACTGATGG 60.494 52.174 0.00 0.00 32.44 3.51
188 189 3.387374 AGGCAGACCTCAATCTACTGATG 59.613 47.826 0.00 0.00 46.34 3.07
189 190 3.652055 AGGCAGACCTCAATCTACTGAT 58.348 45.455 0.00 0.00 46.34 2.90
190 191 3.107402 AGGCAGACCTCAATCTACTGA 57.893 47.619 0.00 0.00 46.34 3.41
213 214 2.798499 CGTTGTAGATAGTTGGCGGAGG 60.798 54.545 0.00 0.00 0.00 4.30
214 215 2.460918 CGTTGTAGATAGTTGGCGGAG 58.539 52.381 0.00 0.00 0.00 4.63
215 216 1.470285 GCGTTGTAGATAGTTGGCGGA 60.470 52.381 0.00 0.00 0.00 5.54
216 217 0.928229 GCGTTGTAGATAGTTGGCGG 59.072 55.000 0.00 0.00 0.00 6.13
217 218 1.635844 TGCGTTGTAGATAGTTGGCG 58.364 50.000 0.00 0.00 0.00 5.69
218 219 2.544267 GGATGCGTTGTAGATAGTTGGC 59.456 50.000 0.00 0.00 0.00 4.52
219 220 3.555956 GTGGATGCGTTGTAGATAGTTGG 59.444 47.826 0.00 0.00 0.00 3.77
220 221 3.242944 CGTGGATGCGTTGTAGATAGTTG 59.757 47.826 0.00 0.00 0.00 3.16
221 222 3.444916 CGTGGATGCGTTGTAGATAGTT 58.555 45.455 0.00 0.00 0.00 2.24
222 223 2.223735 CCGTGGATGCGTTGTAGATAGT 60.224 50.000 0.00 0.00 0.00 2.12
223 224 2.223735 ACCGTGGATGCGTTGTAGATAG 60.224 50.000 0.00 0.00 0.00 2.08
224 225 1.752498 ACCGTGGATGCGTTGTAGATA 59.248 47.619 0.00 0.00 0.00 1.98
225 226 0.535335 ACCGTGGATGCGTTGTAGAT 59.465 50.000 0.00 0.00 0.00 1.98
226 227 0.389296 CACCGTGGATGCGTTGTAGA 60.389 55.000 0.00 0.00 0.00 2.59
227 228 1.358725 CCACCGTGGATGCGTTGTAG 61.359 60.000 12.68 0.00 40.96 2.74
228 229 1.374885 CCACCGTGGATGCGTTGTA 60.375 57.895 12.68 0.00 40.96 2.41
229 230 2.668212 CCACCGTGGATGCGTTGT 60.668 61.111 12.68 0.00 40.96 3.32
230 231 4.101790 GCCACCGTGGATGCGTTG 62.102 66.667 22.37 0.00 40.96 4.10
231 232 4.634703 TGCCACCGTGGATGCGTT 62.635 61.111 22.37 0.00 40.96 4.84
232 233 4.634703 TTGCCACCGTGGATGCGT 62.635 61.111 22.37 0.00 40.96 5.24
233 234 2.597117 GATTTGCCACCGTGGATGCG 62.597 60.000 22.37 0.00 40.96 4.73
234 235 1.139520 GATTTGCCACCGTGGATGC 59.860 57.895 22.37 6.52 40.96 3.91
235 236 1.429021 CGATTTGCCACCGTGGATG 59.571 57.895 22.37 0.00 40.96 3.51
236 237 1.748879 CCGATTTGCCACCGTGGAT 60.749 57.895 22.37 5.82 40.96 3.41
237 238 2.359354 CCGATTTGCCACCGTGGA 60.359 61.111 22.37 0.20 40.96 4.02
238 239 4.114997 GCCGATTTGCCACCGTGG 62.115 66.667 13.71 13.71 41.55 4.94
239 240 2.413437 TTTGCCGATTTGCCACCGTG 62.413 55.000 0.00 0.00 0.00 4.94
240 241 1.739338 TTTTGCCGATTTGCCACCGT 61.739 50.000 0.00 0.00 0.00 4.83
241 242 0.598680 TTTTTGCCGATTTGCCACCG 60.599 50.000 0.00 0.00 0.00 4.94
242 243 3.297391 TTTTTGCCGATTTGCCACC 57.703 47.368 0.00 0.00 0.00 4.61
259 260 2.632512 ACACCAATCCGAGCCAATTTTT 59.367 40.909 0.00 0.00 0.00 1.94
260 261 2.247358 ACACCAATCCGAGCCAATTTT 58.753 42.857 0.00 0.00 0.00 1.82
261 262 1.923356 ACACCAATCCGAGCCAATTT 58.077 45.000 0.00 0.00 0.00 1.82
262 263 2.290641 TGTACACCAATCCGAGCCAATT 60.291 45.455 0.00 0.00 0.00 2.32
263 264 1.280710 TGTACACCAATCCGAGCCAAT 59.719 47.619 0.00 0.00 0.00 3.16
264 265 0.687920 TGTACACCAATCCGAGCCAA 59.312 50.000 0.00 0.00 0.00 4.52
265 266 0.687920 TTGTACACCAATCCGAGCCA 59.312 50.000 0.00 0.00 0.00 4.75
266 267 1.816074 TTTGTACACCAATCCGAGCC 58.184 50.000 0.00 0.00 31.81 4.70
267 268 3.006940 TCATTTGTACACCAATCCGAGC 58.993 45.455 0.00 0.00 31.81 5.03
268 269 4.503910 TCTCATTTGTACACCAATCCGAG 58.496 43.478 0.00 0.00 31.81 4.63
269 270 4.020573 ACTCTCATTTGTACACCAATCCGA 60.021 41.667 0.00 0.00 31.81 4.55
270 271 4.093408 CACTCTCATTTGTACACCAATCCG 59.907 45.833 0.00 0.00 31.81 4.18
271 272 5.003804 ACACTCTCATTTGTACACCAATCC 58.996 41.667 0.00 0.00 31.81 3.01
272 273 6.560253 AACACTCTCATTTGTACACCAATC 57.440 37.500 0.00 0.00 31.81 2.67
273 274 6.959639 AAACACTCTCATTTGTACACCAAT 57.040 33.333 0.00 0.00 31.81 3.16
274 275 6.601613 AGAAAACACTCTCATTTGTACACCAA 59.398 34.615 0.00 0.00 0.00 3.67
275 276 6.119536 AGAAAACACTCTCATTTGTACACCA 58.880 36.000 0.00 0.00 0.00 4.17
276 277 6.619801 AGAAAACACTCTCATTTGTACACC 57.380 37.500 0.00 0.00 0.00 4.16
277 278 8.276325 CACTAGAAAACACTCTCATTTGTACAC 58.724 37.037 0.00 0.00 0.00 2.90
278 279 7.441157 CCACTAGAAAACACTCTCATTTGTACA 59.559 37.037 0.00 0.00 0.00 2.90
279 280 7.095187 CCCACTAGAAAACACTCTCATTTGTAC 60.095 40.741 0.00 0.00 0.00 2.90
280 281 6.934645 CCCACTAGAAAACACTCTCATTTGTA 59.065 38.462 0.00 0.00 0.00 2.41
281 282 5.765182 CCCACTAGAAAACACTCTCATTTGT 59.235 40.000 0.00 0.00 0.00 2.83
282 283 5.182001 CCCCACTAGAAAACACTCTCATTTG 59.818 44.000 0.00 0.00 0.00 2.32
283 284 5.073144 TCCCCACTAGAAAACACTCTCATTT 59.927 40.000 0.00 0.00 0.00 2.32
284 285 4.597507 TCCCCACTAGAAAACACTCTCATT 59.402 41.667 0.00 0.00 0.00 2.57
285 286 4.168101 TCCCCACTAGAAAACACTCTCAT 58.832 43.478 0.00 0.00 0.00 2.90
286 287 3.583228 TCCCCACTAGAAAACACTCTCA 58.417 45.455 0.00 0.00 0.00 3.27
287 288 4.283722 TCTTCCCCACTAGAAAACACTCTC 59.716 45.833 0.00 0.00 0.00 3.20
288 289 4.232091 TCTTCCCCACTAGAAAACACTCT 58.768 43.478 0.00 0.00 0.00 3.24
289 290 4.283722 TCTCTTCCCCACTAGAAAACACTC 59.716 45.833 0.00 0.00 0.00 3.51
290 291 4.232091 TCTCTTCCCCACTAGAAAACACT 58.768 43.478 0.00 0.00 0.00 3.55
291 292 4.618920 TCTCTTCCCCACTAGAAAACAC 57.381 45.455 0.00 0.00 0.00 3.32
292 293 4.041691 CCTTCTCTTCCCCACTAGAAAACA 59.958 45.833 0.00 0.00 0.00 2.83
293 294 4.286291 TCCTTCTCTTCCCCACTAGAAAAC 59.714 45.833 0.00 0.00 0.00 2.43
294 295 4.499472 TCCTTCTCTTCCCCACTAGAAAA 58.501 43.478 0.00 0.00 0.00 2.29
295 296 4.141990 TCCTTCTCTTCCCCACTAGAAA 57.858 45.455 0.00 0.00 0.00 2.52
296 297 3.838903 GTTCCTTCTCTTCCCCACTAGAA 59.161 47.826 0.00 0.00 0.00 2.10
297 298 3.442076 GTTCCTTCTCTTCCCCACTAGA 58.558 50.000 0.00 0.00 0.00 2.43
298 299 2.166664 CGTTCCTTCTCTTCCCCACTAG 59.833 54.545 0.00 0.00 0.00 2.57
299 300 2.176889 CGTTCCTTCTCTTCCCCACTA 58.823 52.381 0.00 0.00 0.00 2.74
300 301 0.977395 CGTTCCTTCTCTTCCCCACT 59.023 55.000 0.00 0.00 0.00 4.00
301 302 0.974383 TCGTTCCTTCTCTTCCCCAC 59.026 55.000 0.00 0.00 0.00 4.61
302 303 1.623811 CTTCGTTCCTTCTCTTCCCCA 59.376 52.381 0.00 0.00 0.00 4.96
303 304 1.900486 TCTTCGTTCCTTCTCTTCCCC 59.100 52.381 0.00 0.00 0.00 4.81
304 305 3.244112 TGTTCTTCGTTCCTTCTCTTCCC 60.244 47.826 0.00 0.00 0.00 3.97
305 306 3.991121 CTGTTCTTCGTTCCTTCTCTTCC 59.009 47.826 0.00 0.00 0.00 3.46
306 307 3.991121 CCTGTTCTTCGTTCCTTCTCTTC 59.009 47.826 0.00 0.00 0.00 2.87
307 308 3.641906 TCCTGTTCTTCGTTCCTTCTCTT 59.358 43.478 0.00 0.00 0.00 2.85
308 309 3.231818 TCCTGTTCTTCGTTCCTTCTCT 58.768 45.455 0.00 0.00 0.00 3.10
309 310 3.662247 TCCTGTTCTTCGTTCCTTCTC 57.338 47.619 0.00 0.00 0.00 2.87
310 311 3.641906 TCTTCCTGTTCTTCGTTCCTTCT 59.358 43.478 0.00 0.00 0.00 2.85
311 312 3.991367 TCTTCCTGTTCTTCGTTCCTTC 58.009 45.455 0.00 0.00 0.00 3.46
312 313 4.127907 GTTCTTCCTGTTCTTCGTTCCTT 58.872 43.478 0.00 0.00 0.00 3.36
313 314 3.134081 TGTTCTTCCTGTTCTTCGTTCCT 59.866 43.478 0.00 0.00 0.00 3.36
314 315 3.463944 TGTTCTTCCTGTTCTTCGTTCC 58.536 45.455 0.00 0.00 0.00 3.62
315 316 4.369182 TCTGTTCTTCCTGTTCTTCGTTC 58.631 43.478 0.00 0.00 0.00 3.95
316 317 4.372656 CTCTGTTCTTCCTGTTCTTCGTT 58.627 43.478 0.00 0.00 0.00 3.85
317 318 3.243907 CCTCTGTTCTTCCTGTTCTTCGT 60.244 47.826 0.00 0.00 0.00 3.85
318 319 3.005897 TCCTCTGTTCTTCCTGTTCTTCG 59.994 47.826 0.00 0.00 0.00 3.79
319 320 4.608948 TCCTCTGTTCTTCCTGTTCTTC 57.391 45.455 0.00 0.00 0.00 2.87
320 321 4.656112 TCTTCCTCTGTTCTTCCTGTTCTT 59.344 41.667 0.00 0.00 0.00 2.52
321 322 4.227197 TCTTCCTCTGTTCTTCCTGTTCT 58.773 43.478 0.00 0.00 0.00 3.01
322 323 4.608948 TCTTCCTCTGTTCTTCCTGTTC 57.391 45.455 0.00 0.00 0.00 3.18
323 324 5.373812 TTTCTTCCTCTGTTCTTCCTGTT 57.626 39.130 0.00 0.00 0.00 3.16
324 325 5.372373 CTTTTCTTCCTCTGTTCTTCCTGT 58.628 41.667 0.00 0.00 0.00 4.00
325 326 4.759183 CCTTTTCTTCCTCTGTTCTTCCTG 59.241 45.833 0.00 0.00 0.00 3.86
326 327 4.202514 CCCTTTTCTTCCTCTGTTCTTCCT 60.203 45.833 0.00 0.00 0.00 3.36
327 328 4.075682 CCCTTTTCTTCCTCTGTTCTTCC 58.924 47.826 0.00 0.00 0.00 3.46
328 329 4.075682 CCCCTTTTCTTCCTCTGTTCTTC 58.924 47.826 0.00 0.00 0.00 2.87
329 330 3.752218 GCCCCTTTTCTTCCTCTGTTCTT 60.752 47.826 0.00 0.00 0.00 2.52
330 331 2.224892 GCCCCTTTTCTTCCTCTGTTCT 60.225 50.000 0.00 0.00 0.00 3.01
331 332 2.163509 GCCCCTTTTCTTCCTCTGTTC 58.836 52.381 0.00 0.00 0.00 3.18
332 333 1.203063 GGCCCCTTTTCTTCCTCTGTT 60.203 52.381 0.00 0.00 0.00 3.16
333 334 0.405973 GGCCCCTTTTCTTCCTCTGT 59.594 55.000 0.00 0.00 0.00 3.41
334 335 0.701147 AGGCCCCTTTTCTTCCTCTG 59.299 55.000 0.00 0.00 0.00 3.35
335 336 0.701147 CAGGCCCCTTTTCTTCCTCT 59.299 55.000 0.00 0.00 0.00 3.69
336 337 0.323816 CCAGGCCCCTTTTCTTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
337 338 1.776969 CCAGGCCCCTTTTCTTCCT 59.223 57.895 0.00 0.00 0.00 3.36
338 339 1.984570 GCCAGGCCCCTTTTCTTCC 60.985 63.158 0.00 0.00 0.00 3.46
339 340 2.343426 CGCCAGGCCCCTTTTCTTC 61.343 63.158 5.63 0.00 0.00 2.87
340 341 2.283173 CGCCAGGCCCCTTTTCTT 60.283 61.111 5.63 0.00 0.00 2.52
357 358 4.925861 GAGAGGATGGCAGCCCGC 62.926 72.222 19.93 11.35 41.28 6.13
358 359 2.728443 GATGAGAGGATGGCAGCCCG 62.728 65.000 19.93 0.00 0.00 6.13
359 360 1.072852 GATGAGAGGATGGCAGCCC 59.927 63.158 19.93 10.24 0.00 5.19
360 361 1.072852 GGATGAGAGGATGGCAGCC 59.927 63.158 15.39 15.39 0.00 4.85
361 362 0.250381 CAGGATGAGAGGATGGCAGC 60.250 60.000 0.00 0.00 39.69 5.25
362 363 0.250381 GCAGGATGAGAGGATGGCAG 60.250 60.000 0.00 0.00 39.69 4.85
363 364 0.984432 TGCAGGATGAGAGGATGGCA 60.984 55.000 0.00 0.00 39.69 4.92
364 365 0.250381 CTGCAGGATGAGAGGATGGC 60.250 60.000 5.57 0.00 39.69 4.40
365 366 0.250381 GCTGCAGGATGAGAGGATGG 60.250 60.000 17.12 0.00 39.69 3.51
366 367 0.759959 AGCTGCAGGATGAGAGGATG 59.240 55.000 17.12 0.00 39.69 3.51
367 368 0.759959 CAGCTGCAGGATGAGAGGAT 59.240 55.000 17.12 0.00 39.69 3.24
368 369 1.335882 CCAGCTGCAGGATGAGAGGA 61.336 60.000 17.12 0.00 39.69 3.71
369 370 1.146485 CCAGCTGCAGGATGAGAGG 59.854 63.158 17.12 0.00 39.69 3.69
370 371 1.146485 CCCAGCTGCAGGATGAGAG 59.854 63.158 17.12 0.00 39.69 3.20
371 372 3.040206 GCCCAGCTGCAGGATGAGA 62.040 63.158 17.12 0.00 39.69 3.27
372 373 2.516460 GCCCAGCTGCAGGATGAG 60.516 66.667 17.12 0.00 39.69 2.90
373 374 4.478371 CGCCCAGCTGCAGGATGA 62.478 66.667 17.12 0.00 39.69 2.92
374 375 4.478371 TCGCCCAGCTGCAGGATG 62.478 66.667 17.12 5.13 40.87 3.51
375 376 4.479993 GTCGCCCAGCTGCAGGAT 62.480 66.667 17.12 0.00 0.00 3.24
378 379 3.429141 CTTGTCGCCCAGCTGCAG 61.429 66.667 10.11 10.11 0.00 4.41
381 382 4.335647 ACCCTTGTCGCCCAGCTG 62.336 66.667 6.78 6.78 0.00 4.24
382 383 4.335647 CACCCTTGTCGCCCAGCT 62.336 66.667 0.00 0.00 0.00 4.24
383 384 4.643387 ACACCCTTGTCGCCCAGC 62.643 66.667 0.00 0.00 0.00 4.85
384 385 2.669569 CACACCCTTGTCGCCCAG 60.670 66.667 0.00 0.00 31.66 4.45
385 386 3.469863 GACACACCCTTGTCGCCCA 62.470 63.158 0.00 0.00 36.79 5.36
386 387 2.668550 GACACACCCTTGTCGCCC 60.669 66.667 0.00 0.00 36.79 6.13
390 391 1.961277 CAGCCGACACACCCTTGTC 60.961 63.158 0.00 0.00 42.24 3.18
391 392 2.111043 CAGCCGACACACCCTTGT 59.889 61.111 0.00 0.00 35.84 3.16
392 393 2.669569 CCAGCCGACACACCCTTG 60.670 66.667 0.00 0.00 0.00 3.61
393 394 3.953775 CCCAGCCGACACACCCTT 61.954 66.667 0.00 0.00 0.00 3.95
412 413 4.096003 ATTCCCGTCGGTGGCTGG 62.096 66.667 11.06 0.00 0.00 4.85
413 414 2.511600 GATTCCCGTCGGTGGCTG 60.512 66.667 11.06 0.00 0.00 4.85
414 415 4.143333 CGATTCCCGTCGGTGGCT 62.143 66.667 11.06 0.00 37.94 4.75
424 425 3.640000 CATGTCGCGGCGATTCCC 61.640 66.667 28.95 15.71 38.42 3.97
425 426 3.640000 CCATGTCGCGGCGATTCC 61.640 66.667 28.95 16.09 38.42 3.01
426 427 2.871427 GACCATGTCGCGGCGATTC 61.871 63.158 28.95 16.85 38.42 2.52
427 428 2.011741 TAGACCATGTCGCGGCGATT 62.012 55.000 28.95 16.17 38.42 3.34
428 429 2.407846 CTAGACCATGTCGCGGCGAT 62.408 60.000 28.95 12.14 38.42 4.58
429 430 3.120979 CTAGACCATGTCGCGGCGA 62.121 63.158 22.69 22.69 37.67 5.54
430 431 2.655364 CTAGACCATGTCGCGGCG 60.655 66.667 17.70 17.70 37.67 6.46
431 432 2.962253 GCTAGACCATGTCGCGGC 60.962 66.667 2.29 2.29 37.67 6.53
432 433 2.279517 GGCTAGACCATGTCGCGG 60.280 66.667 6.13 0.00 37.67 6.46
433 434 2.494445 TGGCTAGACCATGTCGCG 59.506 61.111 0.00 0.00 46.36 5.87
441 442 2.799371 CCGACGAGTGGCTAGACC 59.201 66.667 0.00 0.00 39.84 3.85
458 459 4.451150 TCTCGTCCATGTGGCGGC 62.451 66.667 0.00 0.00 36.10 6.53
459 460 2.202797 CTCTCGTCCATGTGGCGG 60.203 66.667 13.22 6.88 36.10 6.13
460 461 2.202797 CCTCTCGTCCATGTGGCG 60.203 66.667 8.81 8.81 36.52 5.69
461 462 2.512515 GCCTCTCGTCCATGTGGC 60.513 66.667 0.00 0.00 36.02 5.01
462 463 2.187946 GGCCTCTCGTCCATGTGG 59.812 66.667 0.00 0.00 0.00 4.17
463 464 1.153489 CTGGCCTCTCGTCCATGTG 60.153 63.158 3.32 0.00 0.00 3.21
464 465 3.023949 GCTGGCCTCTCGTCCATGT 62.024 63.158 3.32 0.00 0.00 3.21
465 466 2.202987 GCTGGCCTCTCGTCCATG 60.203 66.667 3.32 0.00 0.00 3.66
466 467 2.364842 AGCTGGCCTCTCGTCCAT 60.365 61.111 3.32 0.00 0.00 3.41
467 468 3.385384 CAGCTGGCCTCTCGTCCA 61.385 66.667 5.57 0.00 0.00 4.02
468 469 3.363844 GACAGCTGGCCTCTCGTCC 62.364 68.421 19.93 0.00 0.00 4.79
469 470 2.183046 GACAGCTGGCCTCTCGTC 59.817 66.667 19.93 1.96 0.00 4.20
470 471 3.753434 CGACAGCTGGCCTCTCGT 61.753 66.667 19.93 0.00 0.00 4.18
471 472 4.504916 CCGACAGCTGGCCTCTCG 62.505 72.222 19.93 16.94 0.00 4.04
487 488 2.416260 GTCGTCCTATCGGGTGCC 59.584 66.667 0.00 0.00 36.25 5.01
488 489 2.025727 CGTCGTCCTATCGGGTGC 59.974 66.667 0.00 0.00 36.25 5.01
489 490 2.719979 CCGTCGTCCTATCGGGTG 59.280 66.667 0.00 0.00 40.49 4.61
492 493 2.550101 GGTCCCGTCGTCCTATCGG 61.550 68.421 0.00 0.00 43.30 4.18
493 494 2.550101 GGGTCCCGTCGTCCTATCG 61.550 68.421 0.00 0.00 0.00 2.92
494 495 1.453762 CTGGGTCCCGTCGTCCTATC 61.454 65.000 2.65 0.00 0.00 2.08
495 496 1.455217 CTGGGTCCCGTCGTCCTAT 60.455 63.158 2.65 0.00 0.00 2.57
496 497 2.044650 CTGGGTCCCGTCGTCCTA 60.045 66.667 2.65 0.00 0.00 2.94
497 498 4.296729 ACTGGGTCCCGTCGTCCT 62.297 66.667 2.65 0.00 0.00 3.85
498 499 3.756727 GACTGGGTCCCGTCGTCC 61.757 72.222 14.50 0.00 0.00 4.79
499 500 4.112341 CGACTGGGTCCCGTCGTC 62.112 72.222 30.71 22.52 41.59 4.20
501 502 4.112341 GACGACTGGGTCCCGTCG 62.112 72.222 34.09 34.09 46.81 5.12
503 504 1.676967 GTAGACGACTGGGTCCCGT 60.677 63.158 2.65 4.14 37.66 5.28
504 505 2.413142 GGTAGACGACTGGGTCCCG 61.413 68.421 2.65 0.50 37.66 5.14
505 506 3.613527 GGTAGACGACTGGGTCCC 58.386 66.667 0.00 0.00 37.66 4.46
513 514 4.064266 GTCTGACTGACCGGTAGACGAC 62.064 59.091 16.55 15.26 43.93 4.34
514 515 1.943046 GTCTGACTGACCGGTAGACGA 60.943 57.143 16.55 9.75 43.93 4.20
515 516 0.447011 GTCTGACTGACCGGTAGACG 59.553 60.000 16.55 4.80 39.69 4.18
516 517 0.447011 CGTCTGACTGACCGGTAGAC 59.553 60.000 20.10 20.10 42.49 2.59
517 518 0.322648 TCGTCTGACTGACCGGTAGA 59.677 55.000 7.34 2.74 42.49 2.59
518 519 0.447011 GTCGTCTGACTGACCGGTAG 59.553 60.000 7.34 8.36 42.49 3.18
519 520 0.250424 TGTCGTCTGACTGACCGGTA 60.250 55.000 7.34 0.00 45.70 4.02
520 521 1.105167 TTGTCGTCTGACTGACCGGT 61.105 55.000 6.92 6.92 45.70 5.28
521 522 0.387367 CTTGTCGTCTGACTGACCGG 60.387 60.000 21.27 0.00 45.70 5.28
522 523 0.591659 TCTTGTCGTCTGACTGACCG 59.408 55.000 21.27 15.40 45.70 4.79
523 524 2.229062 TGATCTTGTCGTCTGACTGACC 59.771 50.000 21.27 11.55 45.70 4.02
524 525 3.057876 ACTGATCTTGTCGTCTGACTGAC 60.058 47.826 18.98 18.98 45.70 3.51
525 526 3.149981 ACTGATCTTGTCGTCTGACTGA 58.850 45.455 6.21 2.48 45.70 3.41
526 527 3.497118 GACTGATCTTGTCGTCTGACTG 58.503 50.000 6.21 0.01 45.70 3.51
527 528 3.840890 GACTGATCTTGTCGTCTGACT 57.159 47.619 6.21 0.00 45.70 3.41
535 536 0.802607 GTCGGCCGACTGATCTTGTC 60.803 60.000 43.32 19.15 41.57 3.18
536 537 1.215647 GTCGGCCGACTGATCTTGT 59.784 57.895 43.32 0.00 41.57 3.16
537 538 1.874019 CGTCGGCCGACTGATCTTG 60.874 63.158 44.83 29.08 42.54 3.02
538 539 2.044555 TCGTCGGCCGACTGATCTT 61.045 57.895 44.83 0.00 41.60 2.40
539 540 2.437895 TCGTCGGCCGACTGATCT 60.438 61.111 44.83 0.00 41.60 2.75
547 548 3.929417 TTTTAAATACATCGTCGGCCG 57.071 42.857 22.12 22.12 38.13 6.13
567 568 9.921637 TTTTTCAGGAATATTACGCTGATTTTT 57.078 25.926 0.00 0.00 0.00 1.94
613 614 6.899393 TGAGTCCTTGACATTGCTATTTTT 57.101 33.333 0.00 0.00 34.60 1.94
614 615 6.899393 TTGAGTCCTTGACATTGCTATTTT 57.101 33.333 0.00 0.00 34.60 1.82
615 616 7.831193 AGTATTGAGTCCTTGACATTGCTATTT 59.169 33.333 0.00 0.00 34.60 1.40
616 617 7.341805 AGTATTGAGTCCTTGACATTGCTATT 58.658 34.615 0.00 0.00 34.60 1.73
617 618 6.893583 AGTATTGAGTCCTTGACATTGCTAT 58.106 36.000 0.00 0.00 34.60 2.97
618 619 6.070824 TGAGTATTGAGTCCTTGACATTGCTA 60.071 38.462 0.00 0.00 34.60 3.49
619 620 5.171339 AGTATTGAGTCCTTGACATTGCT 57.829 39.130 0.00 0.00 34.60 3.91
620 621 4.937620 TGAGTATTGAGTCCTTGACATTGC 59.062 41.667 0.00 0.00 34.60 3.56
687 688 8.655970 GCGATTTTCTAAAAATAGCATTGGTTT 58.344 29.630 18.93 0.00 37.90 3.27
954 956 3.787001 GCTCCGAGGTCAAGGGGG 61.787 72.222 0.00 0.00 0.00 5.40
1971 1973 8.088463 AGATCAAGTGGTAGAAAAGATCATCT 57.912 34.615 0.00 0.00 34.40 2.90
2091 2098 1.205655 ACCACAGACTCGGATGACATG 59.794 52.381 0.00 0.00 0.00 3.21
2248 2255 3.061848 GGCTGCCGGCAAAAGCTA 61.062 61.111 32.09 5.20 44.01 3.32
2308 2315 1.135112 TCGTAGACATTGCGCATCAGT 60.135 47.619 12.75 10.60 34.66 3.41
2464 2471 1.874345 CGTTGTACGCCTCCTGGTCT 61.874 60.000 0.00 0.00 33.65 3.85
3034 3041 3.648009 GATGAAGTCATCCTCCGACATC 58.352 50.000 9.74 0.00 45.24 3.06
3172 3179 2.659063 CCGGCTGGTGGTCATCTCA 61.659 63.158 2.29 0.00 0.00 3.27
3256 3263 1.399714 TGAACACCTCACGACTGAGT 58.600 50.000 2.74 0.00 42.36 3.41
3262 3269 1.202639 ACAGCAATGAACACCTCACGA 60.203 47.619 0.00 0.00 36.69 4.35
4013 4020 4.154347 GGCCAGGGAGACGAGCAG 62.154 72.222 0.00 0.00 0.00 4.24
4156 4163 4.785453 CCCGGGAGCAGCTTCACC 62.785 72.222 18.48 2.33 0.00 4.02
4226 4233 2.886523 CCTTGTCAAGCTTCCACATCAA 59.113 45.455 7.09 2.70 0.00 2.57
4405 4412 1.880675 CTCATCAGCTTGATCATGGCC 59.119 52.381 14.83 0.00 34.28 5.36
4582 4589 0.755698 TGCTCCCCGGATCAGAGTAC 60.756 60.000 0.73 0.00 0.00 2.73
4609 4616 3.470567 GACGACGAGCTGTTGCCG 61.471 66.667 0.00 0.00 40.80 5.69
4610 4617 3.470567 CGACGACGAGCTGTTGCC 61.471 66.667 0.00 0.00 42.66 4.52
4645 4652 3.134127 GTCGCCAGGTTGCCCATC 61.134 66.667 0.00 0.00 0.00 3.51
4696 4703 2.811317 CGCACCAGGCTCGTCTTC 60.811 66.667 0.00 0.00 41.67 2.87
4813 4820 3.265791 GAAGATGACGAGGTTGAAGCAT 58.734 45.455 0.00 0.00 0.00 3.79
5023 5030 2.125147 ATGCACGTGTCCATCCGG 60.125 61.111 18.38 0.00 0.00 5.14
5240 5251 8.470805 CATTATTCTGTGAGGTGAACTAGTAGT 58.529 37.037 0.00 0.00 0.00 2.73
5269 5280 9.364989 CTAATTTTCCTGTTGTTTCAAAGTTCA 57.635 29.630 0.00 0.00 0.00 3.18
5270 5281 9.581099 TCTAATTTTCCTGTTGTTTCAAAGTTC 57.419 29.630 0.00 0.00 0.00 3.01
5305 5316 5.176590 GCTCGAGCTCATAATAGGACTTTTG 59.823 44.000 29.88 0.00 38.21 2.44
5306 5317 5.293560 GCTCGAGCTCATAATAGGACTTTT 58.706 41.667 29.88 0.00 38.21 2.27
5496 5507 1.378762 CCCAACATTCGGTGTCCCT 59.621 57.895 0.00 0.00 41.14 4.20
5523 5534 3.744426 GTCCGTTTAGCAGCAAACTTCTA 59.256 43.478 14.55 0.00 36.46 2.10
5527 5538 0.865769 CGTCCGTTTAGCAGCAAACT 59.134 50.000 14.55 0.00 36.46 2.66
5780 5791 3.118454 GTGGACATGTGGCGACCG 61.118 66.667 1.15 0.00 0.00 4.79
5960 5971 0.606130 TGGACGAGTAGTGCGTGGTA 60.606 55.000 0.00 0.00 44.84 3.25
6046 6057 3.016736 ACTTGGGCTATGCATGTACAAC 58.983 45.455 10.16 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.