Multiple sequence alignment - TraesCS3D01G245900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G245900 chr3D 100.000 4250 0 0 707 4956 342428779 342433028 0.000000e+00 7849
1 TraesCS3D01G245900 chr3D 100.000 430 0 0 1 430 342428073 342428502 0.000000e+00 795
2 TraesCS3D01G245900 chr3B 94.126 1447 42 12 3539 4956 441282733 441284165 0.000000e+00 2161
3 TraesCS3D01G245900 chr3B 96.003 1301 48 2 1881 3177 441281451 441282751 0.000000e+00 2111
4 TraesCS3D01G245900 chr3B 94.397 1178 52 6 707 1883 441280233 441281397 0.000000e+00 1797
5 TraesCS3D01G245900 chr3B 87.632 380 10 11 43 403 441279830 441280191 1.660000e-109 407
6 TraesCS3D01G245900 chr3A 94.935 1303 50 10 1884 3177 460149562 460148267 0.000000e+00 2026
7 TraesCS3D01G245900 chr3A 94.939 988 32 8 3539 4513 460148285 460147303 0.000000e+00 1531
8 TraesCS3D01G245900 chr3A 95.996 949 26 3 712 1656 460151889 460150949 0.000000e+00 1531
9 TraesCS3D01G245900 chr3A 86.797 409 14 14 1 382 460152677 460152282 2.130000e-113 420
10 TraesCS3D01G245900 chr3A 97.468 237 6 0 1650 1886 460149850 460149614 5.970000e-109 405
11 TraesCS3D01G245900 chr3A 80.952 231 10 7 4507 4712 460145651 460145430 8.590000e-33 152
12 TraesCS3D01G245900 chr2D 98.087 366 6 1 3176 3541 370058014 370058378 1.950000e-178 636
13 TraesCS3D01G245900 chr1D 98.343 362 5 1 3179 3540 333497982 333498342 7.000000e-178 634
14 TraesCS3D01G245900 chr1D 94.203 69 4 0 1001 1069 467928508 467928440 6.790000e-19 106
15 TraesCS3D01G245900 chr6A 97.820 367 7 1 3174 3540 208511867 208511502 2.520000e-177 632
16 TraesCS3D01G245900 chr7D 98.072 363 6 1 3179 3541 443158874 443158513 9.050000e-177 630
17 TraesCS3D01G245900 chrUn 98.066 362 6 1 3179 3540 119851334 119851694 3.260000e-176 628
18 TraesCS3D01G245900 chr5A 97.554 368 8 1 3174 3540 548606247 548605880 3.260000e-176 628
19 TraesCS3D01G245900 chr5A 97.548 367 7 2 3179 3544 603008085 603008450 1.170000e-175 627
20 TraesCS3D01G245900 chr7B 97.548 367 8 1 3179 3545 24403729 24403364 1.170000e-175 627
21 TraesCS3D01G245900 chr2B 96.063 381 12 3 3168 3547 727234366 727234744 7.050000e-173 617
22 TraesCS3D01G245900 chr1B 97.143 70 2 0 1000 1069 646172461 646172392 8.720000e-23 119
23 TraesCS3D01G245900 chr1A 90.110 91 6 2 1001 1091 560951771 560951684 1.130000e-21 115
24 TraesCS3D01G245900 chr6B 94.286 70 4 0 1000 1069 664805508 664805577 1.890000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G245900 chr3D 342428073 342433028 4955 False 4322.000000 7849 100.000000 1 4956 2 chr3D.!!$F1 4955
1 TraesCS3D01G245900 chr3B 441279830 441284165 4335 False 1619.000000 2161 93.039500 43 4956 4 chr3B.!!$F1 4913
2 TraesCS3D01G245900 chr3A 460145430 460152677 7247 True 1010.833333 2026 91.847833 1 4712 6 chr3A.!!$R1 4711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 429 0.553333 CCCATTTCCTCTTCCTCCCC 59.447 60.000 0.00 0.0 0.00 4.81 F
1117 1212 1.303643 CCTTGCCTCTTCGCCCTTT 60.304 57.895 0.00 0.0 0.00 3.11 F
1421 1516 1.442769 TCTCTGCAAAACTCGCATCC 58.557 50.000 0.00 0.0 39.02 3.51 F
3273 4542 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.0 36.53 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 3150 0.544357 AGTAGCTACCAGGTGTGCCA 60.544 55.0 20.31 0.51 37.19 4.92 R
2071 3330 0.546122 ACTGCACCCACTTGAACTCA 59.454 50.0 0.00 0.00 0.00 3.41 R
3337 4606 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.0 0.00 0.00 0.00 4.52 R
4919 7887 0.460311 CCCGGTACTCTGCTAGTTGG 59.540 60.0 0.00 0.00 39.80 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.500035 GCCGTGTCCACCAGAAAAATAAAA 60.500 41.667 0.00 0.00 0.00 1.52
37 38 5.593010 CCGTGTCCACCAGAAAAATAAAAA 58.407 37.500 0.00 0.00 0.00 1.94
121 127 1.162698 GCTTCCTTTTACCCCGTGAC 58.837 55.000 0.00 0.00 0.00 3.67
190 205 3.248446 TTTCCTTCCCTCCCGCACG 62.248 63.158 0.00 0.00 0.00 5.34
333 361 4.894203 GCGACCGGTACTACGCGG 62.894 72.222 20.57 6.73 41.49 6.46
334 362 4.894203 CGACCGGTACTACGCGGC 62.894 72.222 7.34 0.00 36.04 6.53
335 363 3.512516 GACCGGTACTACGCGGCT 61.513 66.667 7.34 0.00 36.04 5.52
336 364 3.460854 GACCGGTACTACGCGGCTC 62.461 68.421 7.34 2.77 36.04 4.70
337 365 3.207669 CCGGTACTACGCGGCTCT 61.208 66.667 12.47 0.00 0.00 4.09
338 366 2.024305 CGGTACTACGCGGCTCTG 59.976 66.667 12.47 0.00 0.00 3.35
339 367 2.278661 GGTACTACGCGGCTCTGC 60.279 66.667 12.47 0.00 0.00 4.26
395 423 4.333926 CGATTTCTCACCCATTTCCTCTTC 59.666 45.833 0.00 0.00 0.00 2.87
396 424 3.721087 TTCTCACCCATTTCCTCTTCC 57.279 47.619 0.00 0.00 0.00 3.46
397 425 2.921221 TCTCACCCATTTCCTCTTCCT 58.079 47.619 0.00 0.00 0.00 3.36
398 426 2.840651 TCTCACCCATTTCCTCTTCCTC 59.159 50.000 0.00 0.00 0.00 3.71
399 427 1.916181 TCACCCATTTCCTCTTCCTCC 59.084 52.381 0.00 0.00 0.00 4.30
400 428 1.064389 CACCCATTTCCTCTTCCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
401 429 0.553333 CCCATTTCCTCTTCCTCCCC 59.447 60.000 0.00 0.00 0.00 4.81
402 430 1.601248 CCATTTCCTCTTCCTCCCCT 58.399 55.000 0.00 0.00 0.00 4.79
403 431 1.925959 CCATTTCCTCTTCCTCCCCTT 59.074 52.381 0.00 0.00 0.00 3.95
404 432 2.092158 CCATTTCCTCTTCCTCCCCTTC 60.092 54.545 0.00 0.00 0.00 3.46
405 433 1.670059 TTTCCTCTTCCTCCCCTTCC 58.330 55.000 0.00 0.00 0.00 3.46
1116 1211 2.352805 CCTTGCCTCTTCGCCCTT 59.647 61.111 0.00 0.00 0.00 3.95
1117 1212 1.303643 CCTTGCCTCTTCGCCCTTT 60.304 57.895 0.00 0.00 0.00 3.11
1171 1266 3.200605 TGTTGGTCTGGATGCAGATATGT 59.799 43.478 20.59 0.00 33.34 2.29
1246 1341 2.367894 GACATGGAGATGGAGATGCAGA 59.632 50.000 0.00 0.00 33.39 4.26
1421 1516 1.442769 TCTCTGCAAAACTCGCATCC 58.557 50.000 0.00 0.00 39.02 3.51
1459 1554 2.159462 GGAGCTGTAGAAAATGCTGTGC 60.159 50.000 0.00 0.00 35.76 4.57
1505 1600 8.523658 GGATTAACTCAAAATGTTAGCTCCTTT 58.476 33.333 0.00 0.00 34.40 3.11
1644 1739 2.880890 CCATTGTGCAGGATAGGCTTAC 59.119 50.000 0.00 0.00 0.00 2.34
1683 2883 5.642063 ACCACACAAAATGATACTAGAACGG 59.358 40.000 0.00 0.00 0.00 4.44
1782 2982 6.061022 TGCTAACCTATCAAACTTCCATGA 57.939 37.500 0.00 0.00 0.00 3.07
1823 3024 6.591750 TCCTACTTGAACTTGAAGGTCTAG 57.408 41.667 17.90 17.90 40.00 2.43
1858 3059 3.877508 GGCAGTGTGATAACCTTGGTATC 59.122 47.826 0.00 0.00 0.00 2.24
1893 3150 5.661312 TGTAGTACTTGAGCAATCCACCTAT 59.339 40.000 0.00 0.00 0.00 2.57
1959 3216 9.299963 CTAGAAATTACATGTCTGAAGTCTGAG 57.700 37.037 0.00 0.00 0.00 3.35
1968 3225 5.311265 TGTCTGAAGTCTGAGCATTTGAAT 58.689 37.500 0.00 0.00 0.00 2.57
2068 3327 7.425577 TGGATTCAGTTGCTATATTTGATCG 57.574 36.000 0.00 0.00 0.00 3.69
2071 3330 8.725148 GGATTCAGTTGCTATATTTGATCGATT 58.275 33.333 0.00 0.00 0.00 3.34
2073 3332 8.661352 TTCAGTTGCTATATTTGATCGATTGA 57.339 30.769 0.00 0.00 0.00 2.57
2157 3416 4.510571 ACTGTTACCTGAAACTCACGTTT 58.489 39.130 0.00 0.00 45.58 3.60
2225 3484 3.054065 AGCTTCCTGGCAGCTAAAATAGT 60.054 43.478 19.45 0.00 46.18 2.12
2663 3930 0.682852 TAGGTCAAGGAACACCACCG 59.317 55.000 0.00 0.00 34.80 4.94
2881 4148 6.751888 CCGGTTTTATTCCTGTGAATCATTTC 59.248 38.462 0.00 0.00 41.44 2.17
2974 4241 4.647564 ACTCCTGTTGTGATCCAAATCT 57.352 40.909 0.00 0.00 34.07 2.40
3086 4355 4.692625 GTGAGCAGCAGTTCTCTTATTTCA 59.307 41.667 0.00 0.00 0.00 2.69
3164 4433 6.770785 ACATAGCCAAAACTGTTTCTTCAGTA 59.229 34.615 6.20 0.00 46.25 2.74
3165 4434 7.284489 ACATAGCCAAAACTGTTTCTTCAGTAA 59.716 33.333 6.20 0.00 46.25 2.24
3166 4435 5.891451 AGCCAAAACTGTTTCTTCAGTAAC 58.109 37.500 6.20 0.00 46.25 2.50
3167 4436 5.652452 AGCCAAAACTGTTTCTTCAGTAACT 59.348 36.000 6.20 0.00 46.25 2.24
3168 4437 6.826741 AGCCAAAACTGTTTCTTCAGTAACTA 59.173 34.615 6.20 0.00 46.25 2.24
3169 4438 7.502561 AGCCAAAACTGTTTCTTCAGTAACTAT 59.497 33.333 6.20 0.00 46.25 2.12
3170 4439 8.780249 GCCAAAACTGTTTCTTCAGTAACTATA 58.220 33.333 6.20 0.00 46.25 1.31
3198 4467 9.617975 TCTTTCTACTTACTTTACTTACGAAGC 57.382 33.333 0.00 0.00 0.00 3.86
3199 4468 8.748380 TTTCTACTTACTTTACTTACGAAGCC 57.252 34.615 0.00 0.00 0.00 4.35
3200 4469 7.693969 TCTACTTACTTTACTTACGAAGCCT 57.306 36.000 0.00 0.00 0.00 4.58
3201 4470 8.115490 TCTACTTACTTTACTTACGAAGCCTT 57.885 34.615 0.00 0.00 0.00 4.35
3202 4471 8.579863 TCTACTTACTTTACTTACGAAGCCTTT 58.420 33.333 0.00 0.00 0.00 3.11
3203 4472 9.201127 CTACTTACTTTACTTACGAAGCCTTTT 57.799 33.333 0.00 0.00 0.00 2.27
3205 4474 9.716531 ACTTACTTTACTTACGAAGCCTTTTAT 57.283 29.630 0.00 0.00 0.00 1.40
3207 4476 7.606858 ACTTTACTTACGAAGCCTTTTATCC 57.393 36.000 0.00 0.00 0.00 2.59
3208 4477 6.596888 ACTTTACTTACGAAGCCTTTTATCCC 59.403 38.462 0.00 0.00 0.00 3.85
3209 4478 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
3210 4479 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
3211 4480 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
3212 4481 5.771165 ACTTACGAAGCCTTTTATCCCAAAA 59.229 36.000 0.00 0.00 0.00 2.44
3213 4482 6.265876 ACTTACGAAGCCTTTTATCCCAAAAA 59.734 34.615 0.00 0.00 0.00 1.94
3231 4500 4.948062 AAAAAGTTGGGGTAGGCTAGAT 57.052 40.909 0.00 0.00 0.00 1.98
3233 4502 6.592207 AAAAAGTTGGGGTAGGCTAGATAT 57.408 37.500 0.00 0.00 0.00 1.63
3234 4503 5.568620 AAAGTTGGGGTAGGCTAGATATG 57.431 43.478 0.00 0.00 0.00 1.78
3235 4504 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
3236 4505 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
3237 4506 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
3238 4507 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
3239 4508 4.827789 TGGGGTAGGCTAGATATGAAACT 58.172 43.478 0.00 0.00 0.00 2.66
3240 4509 4.838986 TGGGGTAGGCTAGATATGAAACTC 59.161 45.833 0.00 0.00 0.00 3.01
3241 4510 5.088026 GGGGTAGGCTAGATATGAAACTCT 58.912 45.833 0.00 0.00 0.00 3.24
3242 4511 5.544562 GGGGTAGGCTAGATATGAAACTCTT 59.455 44.000 0.00 0.00 0.00 2.85
3243 4512 6.043358 GGGGTAGGCTAGATATGAAACTCTTT 59.957 42.308 0.00 0.00 0.00 2.52
3244 4513 7.156000 GGGTAGGCTAGATATGAAACTCTTTC 58.844 42.308 0.00 0.00 40.08 2.62
3254 4523 4.402056 TGAAACTCTTTCACGAGGACTT 57.598 40.909 0.00 0.00 44.21 3.01
3255 4524 4.369182 TGAAACTCTTTCACGAGGACTTC 58.631 43.478 0.00 0.00 44.21 3.01
3256 4525 3.388345 AACTCTTTCACGAGGACTTCC 57.612 47.619 0.00 0.00 35.33 3.46
3257 4526 4.501743 GAAACTCTTTCACGAGGACTTCCT 60.502 45.833 0.00 0.00 43.41 3.36
3258 4527 5.278858 GAAACTCTTTCACGAGGACTTCCTA 60.279 44.000 0.00 0.00 42.02 2.94
3259 4528 7.062288 GAAACTCTTTCACGAGGACTTCCTAG 61.062 46.154 0.00 0.27 42.02 3.02
3260 4529 9.858217 GAAACTCTTTCACGAGGACTTCCTAGG 62.858 48.148 0.82 0.82 42.02 3.02
3269 4538 1.487300 GACTTCCTAGGAGGTCACCC 58.513 60.000 36.64 18.70 46.32 4.61
3270 4539 0.790993 ACTTCCTAGGAGGTCACCCA 59.209 55.000 20.38 0.00 36.53 4.51
3271 4540 1.366435 ACTTCCTAGGAGGTCACCCAT 59.634 52.381 20.38 0.00 36.53 4.00
3272 4541 2.043227 CTTCCTAGGAGGTCACCCATC 58.957 57.143 12.26 0.00 36.53 3.51
3273 4542 0.264955 TCCTAGGAGGTCACCCATCC 59.735 60.000 7.62 0.00 36.53 3.51
3274 4543 0.266152 CCTAGGAGGTCACCCATCCT 59.734 60.000 9.58 9.58 39.90 3.24
3275 4544 1.503784 CCTAGGAGGTCACCCATCCTA 59.496 57.143 10.74 10.74 38.53 2.94
3276 4545 2.491825 CCTAGGAGGTCACCCATCCTAG 60.492 59.091 24.06 24.06 46.05 3.02
3277 4546 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
3278 4547 2.224077 AGGAGGTCACCCATCCTAGTA 58.776 52.381 2.60 0.00 36.91 1.82
3279 4548 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
3280 4549 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
3281 4550 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
3282 4551 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
3283 4552 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
3284 4553 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
3285 4554 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
3286 4555 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
3287 4556 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
3288 4557 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
3289 4558 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
3290 4559 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
3291 4560 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
3292 4561 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
3293 4562 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
3294 4563 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
3295 4564 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
3296 4565 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
3317 4586 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
3318 4587 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
3319 4588 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
3320 4589 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
3321 4590 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
3322 4591 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
3323 4592 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
3324 4593 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
3325 4594 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
3326 4595 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
3327 4596 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
3328 4597 6.075315 ACCCAAAAGACTGGCTAGTTTTTAT 58.925 36.000 17.28 7.01 39.50 1.40
3329 4598 6.015434 ACCCAAAAGACTGGCTAGTTTTTATG 60.015 38.462 17.28 15.84 39.50 1.90
3330 4599 6.015434 CCCAAAAGACTGGCTAGTTTTTATGT 60.015 38.462 17.28 1.78 39.50 2.29
3331 4600 7.433680 CCAAAAGACTGGCTAGTTTTTATGTT 58.566 34.615 17.28 1.45 39.50 2.71
3332 4601 7.382218 CCAAAAGACTGGCTAGTTTTTATGTTG 59.618 37.037 17.28 12.14 39.50 3.33
3333 4602 6.575162 AAGACTGGCTAGTTTTTATGTTGG 57.425 37.500 3.47 0.00 37.25 3.77
3334 4603 4.459337 AGACTGGCTAGTTTTTATGTTGGC 59.541 41.667 3.47 0.00 37.25 4.52
3335 4604 4.407365 ACTGGCTAGTTTTTATGTTGGCT 58.593 39.130 0.00 0.00 31.66 4.75
3336 4605 4.459337 ACTGGCTAGTTTTTATGTTGGCTC 59.541 41.667 0.00 0.00 31.66 4.70
3337 4606 3.438781 TGGCTAGTTTTTATGTTGGCTCG 59.561 43.478 0.00 0.00 0.00 5.03
3338 4607 3.426323 GCTAGTTTTTATGTTGGCTCGC 58.574 45.455 0.00 0.00 0.00 5.03
3339 4608 3.730963 GCTAGTTTTTATGTTGGCTCGCC 60.731 47.826 0.00 0.00 0.00 5.54
3340 4609 2.235016 AGTTTTTATGTTGGCTCGCCA 58.765 42.857 6.52 6.52 45.63 5.69
3350 4619 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
3351 4620 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
3352 4621 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
3353 4622 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
3354 4623 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
3355 4624 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
3356 4625 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3357 4626 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
3358 4627 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
3359 4628 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
3360 4629 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
3361 4630 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
3362 4631 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
3363 4632 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
3364 4633 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
3365 4634 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
3366 4635 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
3367 4636 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
3368 4637 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
3369 4638 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
3370 4639 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
3371 4640 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
3372 4641 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
3373 4642 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
3374 4643 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
3382 4651 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
3383 4652 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
3384 4653 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
3385 4654 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
3386 4655 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
3387 4656 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
3388 4657 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
3389 4658 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
3390 4659 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
3391 4660 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
3392 4661 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
3393 4662 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
3394 4663 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
3395 4664 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
3398 4667 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
3399 4668 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
3400 4669 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
3401 4670 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
3402 4671 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
3403 4672 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
3404 4673 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
3405 4674 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
3406 4675 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
3407 4676 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
3408 4677 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
3409 4678 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
3410 4679 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
3411 4680 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
3412 4681 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
3413 4682 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
3414 4683 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
3415 4684 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
3416 4685 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
3417 4686 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
3418 4687 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
3419 4688 3.244630 CCCATCCTAGTACTACTCTCGCT 60.245 52.174 0.00 0.00 0.00 4.93
3420 4689 3.998341 CCATCCTAGTACTACTCTCGCTC 59.002 52.174 0.00 0.00 0.00 5.03
3421 4690 4.503469 CCATCCTAGTACTACTCTCGCTCA 60.503 50.000 0.00 0.00 0.00 4.26
3422 4691 4.750021 TCCTAGTACTACTCTCGCTCAA 57.250 45.455 0.00 0.00 0.00 3.02
3423 4692 4.695396 TCCTAGTACTACTCTCGCTCAAG 58.305 47.826 0.00 0.00 0.00 3.02
3424 4693 4.161942 TCCTAGTACTACTCTCGCTCAAGT 59.838 45.833 0.00 0.00 0.00 3.16
3425 4694 4.271533 CCTAGTACTACTCTCGCTCAAGTG 59.728 50.000 0.00 0.00 0.00 3.16
3426 4695 3.011119 AGTACTACTCTCGCTCAAGTGG 58.989 50.000 0.00 0.00 0.00 4.00
3427 4696 1.178276 ACTACTCTCGCTCAAGTGGG 58.822 55.000 0.00 0.00 0.00 4.61
3428 4697 1.178276 CTACTCTCGCTCAAGTGGGT 58.822 55.000 0.00 0.00 0.00 4.51
3429 4698 1.546476 CTACTCTCGCTCAAGTGGGTT 59.454 52.381 0.00 0.00 0.00 4.11
3430 4699 0.759346 ACTCTCGCTCAAGTGGGTTT 59.241 50.000 0.00 0.00 0.00 3.27
3431 4700 1.270358 ACTCTCGCTCAAGTGGGTTTC 60.270 52.381 0.00 0.00 0.00 2.78
3432 4701 0.756294 TCTCGCTCAAGTGGGTTTCA 59.244 50.000 0.00 0.00 0.00 2.69
3433 4702 1.347707 TCTCGCTCAAGTGGGTTTCAT 59.652 47.619 0.00 0.00 0.00 2.57
3434 4703 2.565391 TCTCGCTCAAGTGGGTTTCATA 59.435 45.455 0.00 0.00 0.00 2.15
3435 4704 2.673368 CTCGCTCAAGTGGGTTTCATAC 59.327 50.000 0.00 0.00 0.00 2.39
3436 4705 1.737793 CGCTCAAGTGGGTTTCATACC 59.262 52.381 0.00 0.00 46.99 2.73
3437 4706 2.615493 CGCTCAAGTGGGTTTCATACCT 60.615 50.000 0.00 0.00 46.86 3.08
3438 4707 3.369052 CGCTCAAGTGGGTTTCATACCTA 60.369 47.826 0.00 0.00 46.86 3.08
3439 4708 4.683400 CGCTCAAGTGGGTTTCATACCTAT 60.683 45.833 0.00 0.00 46.86 2.57
3440 4709 4.576463 GCTCAAGTGGGTTTCATACCTATG 59.424 45.833 0.00 0.00 46.86 2.23
3441 4710 5.110814 TCAAGTGGGTTTCATACCTATGG 57.889 43.478 0.00 0.00 46.86 2.74
3442 4711 4.080015 TCAAGTGGGTTTCATACCTATGGG 60.080 45.833 0.00 0.00 46.86 4.00
3443 4712 3.743132 AGTGGGTTTCATACCTATGGGA 58.257 45.455 0.25 0.00 46.86 4.37
3444 4713 3.458487 AGTGGGTTTCATACCTATGGGAC 59.542 47.826 0.25 0.00 46.86 4.46
3445 4714 3.458487 GTGGGTTTCATACCTATGGGACT 59.542 47.826 0.25 0.00 46.86 3.85
3446 4715 3.458118 TGGGTTTCATACCTATGGGACTG 59.542 47.826 0.25 0.00 46.86 3.51
3447 4716 3.181443 GGGTTTCATACCTATGGGACTGG 60.181 52.174 0.25 0.00 46.86 4.00
3448 4717 3.477530 GTTTCATACCTATGGGACTGGC 58.522 50.000 0.25 0.00 34.50 4.85
3449 4718 2.795291 TCATACCTATGGGACTGGCT 57.205 50.000 0.25 0.00 34.50 4.75
3450 4719 3.915346 TCATACCTATGGGACTGGCTA 57.085 47.619 0.25 0.00 34.50 3.93
3451 4720 3.779444 TCATACCTATGGGACTGGCTAG 58.221 50.000 0.25 0.00 34.50 3.42
3452 4721 3.142217 TCATACCTATGGGACTGGCTAGT 59.858 47.826 0.69 0.69 35.65 2.57
3453 4722 2.570386 ACCTATGGGACTGGCTAGTT 57.430 50.000 3.47 0.00 37.25 2.24
3454 4723 2.846950 ACCTATGGGACTGGCTAGTTT 58.153 47.619 3.47 0.00 37.25 2.66
3455 4724 3.190439 ACCTATGGGACTGGCTAGTTTT 58.810 45.455 3.47 0.00 37.25 2.43
3456 4725 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
3457 4726 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
3458 4727 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
3459 4728 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
3460 4729 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
3461 4730 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
3462 4731 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
3463 4732 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
3464 4733 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
3465 4734 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
3466 4735 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
3467 4736 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
3468 4737 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
3469 4738 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
3470 4739 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
3480 4749 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
3481 4750 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
3482 4751 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
3483 4752 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
3484 4753 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
3485 4754 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
3486 4755 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
3487 4756 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
3488 4757 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
3489 4758 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
3490 4759 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
3491 4760 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3492 4761 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
3493 4762 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
3494 4763 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
3495 4764 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
3496 4765 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
3497 4766 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
3498 4767 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
3499 4768 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
3500 4769 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
3501 4770 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
3502 4771 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
3503 4772 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
3504 4773 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
3505 4774 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
3506 4775 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
3516 4785 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
3517 4786 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
3518 4787 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
3519 4788 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
3532 4801 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
3538 4807 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
3539 4808 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
3540 4809 3.004944 CCTAGAAGACATAGGCGGAGTTC 59.995 52.174 0.00 0.00 33.76 3.01
3541 4810 2.457598 AGAAGACATAGGCGGAGTTCA 58.542 47.619 0.00 0.00 0.00 3.18
3542 4811 2.428890 AGAAGACATAGGCGGAGTTCAG 59.571 50.000 0.00 0.00 0.00 3.02
3543 4812 1.853963 AGACATAGGCGGAGTTCAGT 58.146 50.000 0.00 0.00 0.00 3.41
3683 4954 3.514645 CATTTGAGGCAAAAGGATTCCG 58.485 45.455 0.00 0.00 36.90 4.30
3684 4955 0.887933 TTGAGGCAAAAGGATTCCGC 59.112 50.000 0.00 0.00 0.00 5.54
3685 4956 0.251121 TGAGGCAAAAGGATTCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
3826 5104 6.909357 CCTCATTCGATCTGCAAACTTAAATC 59.091 38.462 0.00 0.00 0.00 2.17
3839 5117 9.482627 TGCAAACTTAAATCGTATTTTTCCATT 57.517 25.926 0.00 0.00 0.00 3.16
3961 5239 1.040646 TTGGAGACGACTGAGTGCTT 58.959 50.000 0.00 0.00 0.00 3.91
4042 5322 2.925170 AGCACTCCGCCCTGAGTT 60.925 61.111 0.00 0.00 42.92 3.01
4158 5438 1.545651 GGTAGCTGTCCCATATTGCCC 60.546 57.143 0.00 0.00 0.00 5.36
4349 5629 5.105595 GCAATAAGCAGAATCCAAGTCCTTT 60.106 40.000 0.00 0.00 44.79 3.11
4476 5760 1.621317 TGAGAACGGTAACTGGCATGA 59.379 47.619 0.00 0.00 0.00 3.07
4560 7502 4.328536 ACATGTATTTGGTCGCCTGTTTA 58.671 39.130 0.00 0.00 0.00 2.01
4580 7522 3.678056 ACTGCGTTGACTAGAAATGGA 57.322 42.857 0.00 0.00 0.00 3.41
4717 7684 2.576298 GCTTCTGCTTTCCCATGCT 58.424 52.632 0.00 0.00 36.03 3.79
4718 7685 0.893447 GCTTCTGCTTTCCCATGCTT 59.107 50.000 0.00 0.00 36.03 3.91
4719 7686 1.274447 GCTTCTGCTTTCCCATGCTTT 59.726 47.619 0.00 0.00 36.03 3.51
4792 7759 3.421394 TGTGGGAGGTTGATAGGATCT 57.579 47.619 0.00 0.00 0.00 2.75
4834 7801 9.613428 TTAACATTAGAAACATCATCTGTAGGG 57.387 33.333 0.00 0.00 36.98 3.53
4846 7813 1.895131 TCTGTAGGGGGAACGTGTTAC 59.105 52.381 0.00 0.00 0.00 2.50
4880 7848 6.706055 AAATTATGCTACACGATCATACCG 57.294 37.500 0.00 0.00 0.00 4.02
4888 7856 2.159282 ACACGATCATACCGAGGAACAC 60.159 50.000 0.00 0.00 0.00 3.32
4892 7860 4.023107 ACGATCATACCGAGGAACACTATG 60.023 45.833 0.00 0.00 0.00 2.23
4901 7869 2.703007 GAGGAACACTATGGAGATGGCT 59.297 50.000 0.00 0.00 0.00 4.75
4919 7887 4.009675 TGGCTGGTAATGATCAAACTCAC 58.990 43.478 0.00 0.00 0.00 3.51
4937 7905 1.135083 CACCAACTAGCAGAGTACCGG 60.135 57.143 0.00 0.00 37.44 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.839668 TTTATTTTTCTGGTGGACACGG 57.160 40.909 0.00 0.00 0.00 4.94
102 103 1.162698 GTCACGGGGTAAAAGGAAGC 58.837 55.000 0.00 0.00 0.00 3.86
104 105 1.001181 CTCGTCACGGGGTAAAAGGAA 59.999 52.381 0.00 0.00 0.00 3.36
105 106 0.604578 CTCGTCACGGGGTAAAAGGA 59.395 55.000 0.00 0.00 0.00 3.36
106 107 1.017701 GCTCGTCACGGGGTAAAAGG 61.018 60.000 0.00 0.00 0.00 3.11
332 360 1.036707 CAGGGTAGTAGAGCAGAGCC 58.963 60.000 0.00 0.00 0.00 4.70
333 361 0.387565 GCAGGGTAGTAGAGCAGAGC 59.612 60.000 0.00 0.00 0.00 4.09
334 362 1.407258 GTGCAGGGTAGTAGAGCAGAG 59.593 57.143 0.00 0.00 35.66 3.35
335 363 1.475403 GTGCAGGGTAGTAGAGCAGA 58.525 55.000 0.00 0.00 35.66 4.26
336 364 0.101399 CGTGCAGGGTAGTAGAGCAG 59.899 60.000 0.00 0.00 35.66 4.24
337 365 0.323087 TCGTGCAGGGTAGTAGAGCA 60.323 55.000 6.56 0.00 0.00 4.26
338 366 0.815734 TTCGTGCAGGGTAGTAGAGC 59.184 55.000 6.56 0.00 0.00 4.09
339 367 3.512680 CTTTTCGTGCAGGGTAGTAGAG 58.487 50.000 6.56 0.00 0.00 2.43
395 423 4.845307 GGGGAGGGGAAGGGGAGG 62.845 77.778 0.00 0.00 0.00 4.30
396 424 3.711782 AGGGGAGGGGAAGGGGAG 61.712 72.222 0.00 0.00 0.00 4.30
397 425 3.707189 GAGGGGAGGGGAAGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
398 426 1.985473 TATGAGGGGAGGGGAAGGGG 61.985 65.000 0.00 0.00 0.00 4.79
399 427 0.029059 TTATGAGGGGAGGGGAAGGG 60.029 60.000 0.00 0.00 0.00 3.95
400 428 1.061346 TCTTATGAGGGGAGGGGAAGG 60.061 57.143 0.00 0.00 0.00 3.46
401 429 2.496679 TCTTATGAGGGGAGGGGAAG 57.503 55.000 0.00 0.00 0.00 3.46
402 430 2.320986 TCTTCTTATGAGGGGAGGGGAA 59.679 50.000 0.00 0.00 0.00 3.97
403 431 1.944588 TCTTCTTATGAGGGGAGGGGA 59.055 52.381 0.00 0.00 0.00 4.81
404 432 2.496679 TCTTCTTATGAGGGGAGGGG 57.503 55.000 0.00 0.00 0.00 4.79
405 433 2.105649 GCTTCTTCTTATGAGGGGAGGG 59.894 54.545 0.00 0.00 0.00 4.30
1082 1177 4.856607 GCGAGACGAGAAGGGCGG 62.857 72.222 0.00 0.00 0.00 6.13
1116 1211 6.457159 TTAAGTAAATCCAGTGAAGGGGAA 57.543 37.500 0.00 0.00 36.62 3.97
1117 1212 6.652205 ATTAAGTAAATCCAGTGAAGGGGA 57.348 37.500 0.00 0.00 37.64 4.81
1171 1266 2.122413 CTCCATCCCCATCCCCGA 60.122 66.667 0.00 0.00 0.00 5.14
1246 1341 1.535685 GCCATCTTGCCTCCTCCAT 59.464 57.895 0.00 0.00 0.00 3.41
1421 1516 2.012673 CTCCAATCGGAAAAGGAGCAG 58.987 52.381 9.76 0.00 42.21 4.24
1505 1600 8.681806 TGCGATCAATCAAATCAAAATAGGTAA 58.318 29.630 0.00 0.00 0.00 2.85
1644 1739 1.339631 TGTGGTCAAGCCCTAAATCCG 60.340 52.381 0.00 0.00 36.04 4.18
1683 2883 3.686016 TCTGGGCCAAGATACAAACTTC 58.314 45.455 5.43 0.00 0.00 3.01
1782 2982 8.571336 CAAGTAGGAACACAAGAAATTTCAGAT 58.429 33.333 19.99 3.37 0.00 2.90
1823 3024 3.447586 TCACACTGCCCTGTATCTAAGAC 59.552 47.826 0.00 0.00 0.00 3.01
1858 3059 5.163913 GCTCAAGTACTACAATGACAAGCAG 60.164 44.000 0.00 0.00 0.00 4.24
1893 3150 0.544357 AGTAGCTACCAGGTGTGCCA 60.544 55.000 20.31 0.51 37.19 4.92
1959 3216 4.090930 GTGCTGTCATGAACATTCAAATGC 59.909 41.667 0.00 0.00 41.13 3.56
2068 3327 2.227388 CTGCACCCACTTGAACTCAATC 59.773 50.000 0.00 0.00 35.02 2.67
2071 3330 0.546122 ACTGCACCCACTTGAACTCA 59.454 50.000 0.00 0.00 0.00 3.41
2073 3332 1.103398 GCACTGCACCCACTTGAACT 61.103 55.000 0.00 0.00 0.00 3.01
2204 3463 3.282885 ACTATTTTAGCTGCCAGGAAGC 58.717 45.455 12.34 12.34 41.15 3.86
2525 3792 2.632377 CAACCGGCTGACATTCTGTAT 58.368 47.619 0.00 0.00 0.00 2.29
2535 3802 3.899981 AATCTGCGCAACCGGCTGA 62.900 57.895 13.05 3.15 41.56 4.26
2579 3846 3.304123 CGTAGATCTCGGCTCAGTAAAGG 60.304 52.174 0.00 0.00 0.00 3.11
2663 3930 5.916883 CAGCATAAATATTTGTAGTGGCAGC 59.083 40.000 11.05 2.52 0.00 5.25
2847 4114 4.393990 CAGGAATAAAACCGGTAGGACAAC 59.606 45.833 8.00 0.00 41.02 3.32
2881 4148 9.289303 GTAAATTGTGTGCAGGTAATAGATTTG 57.711 33.333 0.00 0.00 0.00 2.32
2954 4221 4.582869 TCAGATTTGGATCACAACAGGAG 58.417 43.478 0.00 0.00 39.19 3.69
2974 4241 7.441157 CGGTTCAAACAATAGCTAGGATATTCA 59.559 37.037 0.00 0.00 0.00 2.57
3086 4355 5.859205 ACTGAAAGAACAAGGAGCAATTT 57.141 34.783 0.00 0.00 37.43 1.82
3121 4390 7.124298 TGGCTATGTGAAACTATTAGACTCAGT 59.876 37.037 0.00 0.00 38.04 3.41
3123 4392 7.418337 TGGCTATGTGAAACTATTAGACTCA 57.582 36.000 0.00 0.00 38.04 3.41
3172 4441 9.617975 GCTTCGTAAGTAAAGTAAGTAGAAAGA 57.382 33.333 0.00 0.00 39.48 2.52
3173 4442 8.858186 GGCTTCGTAAGTAAAGTAAGTAGAAAG 58.142 37.037 0.00 0.00 39.48 2.62
3174 4443 8.579863 AGGCTTCGTAAGTAAAGTAAGTAGAAA 58.420 33.333 0.00 0.00 39.48 2.52
3175 4444 8.115490 AGGCTTCGTAAGTAAAGTAAGTAGAA 57.885 34.615 0.00 0.00 39.48 2.10
3176 4445 7.693969 AGGCTTCGTAAGTAAAGTAAGTAGA 57.306 36.000 0.00 0.00 39.48 2.59
3177 4446 8.754230 AAAGGCTTCGTAAGTAAAGTAAGTAG 57.246 34.615 0.00 0.00 39.48 2.57
3179 4448 9.716531 ATAAAAGGCTTCGTAAGTAAAGTAAGT 57.283 29.630 0.00 0.00 39.48 2.24
3181 4450 9.154847 GGATAAAAGGCTTCGTAAGTAAAGTAA 57.845 33.333 0.00 0.00 39.48 2.24
3182 4451 7.765819 GGGATAAAAGGCTTCGTAAGTAAAGTA 59.234 37.037 0.00 0.00 39.48 2.24
3183 4452 6.596888 GGGATAAAAGGCTTCGTAAGTAAAGT 59.403 38.462 0.00 0.00 39.48 2.66
3184 4453 6.596497 TGGGATAAAAGGCTTCGTAAGTAAAG 59.404 38.462 0.00 0.00 39.48 1.85
3185 4454 6.474630 TGGGATAAAAGGCTTCGTAAGTAAA 58.525 36.000 0.00 0.00 39.48 2.01
3186 4455 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
3187 4456 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
3188 4457 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
3189 4458 5.890424 TTTGGGATAAAAGGCTTCGTAAG 57.110 39.130 0.00 0.00 0.00 2.34
3190 4459 6.651975 TTTTTGGGATAAAAGGCTTCGTAA 57.348 33.333 0.00 0.00 0.00 3.18
3210 4479 4.948062 ATCTAGCCTACCCCAACTTTTT 57.052 40.909 0.00 0.00 0.00 1.94
3211 4480 5.670361 TCATATCTAGCCTACCCCAACTTTT 59.330 40.000 0.00 0.00 0.00 2.27
3212 4481 5.224441 TCATATCTAGCCTACCCCAACTTT 58.776 41.667 0.00 0.00 0.00 2.66
3213 4482 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
3214 4483 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
3215 4484 5.071923 AGTTTCATATCTAGCCTACCCCAAC 59.928 44.000 0.00 0.00 0.00 3.77
3216 4485 5.224441 AGTTTCATATCTAGCCTACCCCAA 58.776 41.667 0.00 0.00 0.00 4.12
3217 4486 4.827789 AGTTTCATATCTAGCCTACCCCA 58.172 43.478 0.00 0.00 0.00 4.96
3218 4487 5.088026 AGAGTTTCATATCTAGCCTACCCC 58.912 45.833 0.00 0.00 0.00 4.95
3219 4488 6.673839 AAGAGTTTCATATCTAGCCTACCC 57.326 41.667 0.00 0.00 0.00 3.69
3220 4489 7.727181 TGAAAGAGTTTCATATCTAGCCTACC 58.273 38.462 0.00 0.00 44.21 3.18
3231 4500 8.880078 AGGAAGTCCTCGTGAAAGAGTTTCATA 61.880 40.741 5.44 0.00 46.51 2.15
3232 4501 8.148107 AGGAAGTCCTCGTGAAAGAGTTTCAT 62.148 42.308 5.44 0.00 46.51 2.57
3233 4502 4.369182 GAAGTCCTCGTGAAAGAGTTTCA 58.631 43.478 0.00 0.00 46.68 2.69
3234 4503 3.741856 GGAAGTCCTCGTGAAAGAGTTTC 59.258 47.826 0.00 0.00 40.08 2.78
3235 4504 3.388350 AGGAAGTCCTCGTGAAAGAGTTT 59.612 43.478 0.00 0.00 44.77 2.66
3236 4505 2.966516 AGGAAGTCCTCGTGAAAGAGTT 59.033 45.455 0.00 0.00 44.77 3.01
3237 4506 2.599677 AGGAAGTCCTCGTGAAAGAGT 58.400 47.619 0.00 0.00 44.77 3.24
3238 4507 3.129638 CCTAGGAAGTCCTCGTGAAAGAG 59.870 52.174 1.05 0.00 44.77 2.85
3239 4508 3.090037 CCTAGGAAGTCCTCGTGAAAGA 58.910 50.000 1.05 0.00 44.77 2.52
3240 4509 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
3241 4510 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
3242 4511 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
3243 4512 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
3244 4513 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
3245 4514 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
3246 4515 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
3247 4516 2.380941 GTGACCTCCTAGGAAGTCCTC 58.619 57.143 29.70 21.09 44.77 3.71
3249 4518 1.487300 GGTGACCTCCTAGGAAGTCC 58.513 60.000 29.70 22.12 37.67 3.85
3263 4532 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
3264 4533 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
3265 4534 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
3266 4535 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
3267 4536 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
3268 4537 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
3269 4538 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
3270 4539 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
3271 4540 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
3272 4541 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
3273 4542 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
3274 4543 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
3275 4544 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
3276 4545 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
3296 4565 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
3297 4566 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
3298 4567 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
3299 4568 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
3300 4569 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
3301 4570 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
3302 4571 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
3303 4572 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
3305 4574 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
3306 4575 6.981722 ACATAAAAACTAGCCAGTCTTTTGG 58.018 36.000 12.02 8.55 41.35 3.28
3307 4576 7.382218 CCAACATAAAAACTAGCCAGTCTTTTG 59.618 37.037 12.02 6.02 32.29 2.44
3308 4577 7.433680 CCAACATAAAAACTAGCCAGTCTTTT 58.566 34.615 0.00 0.85 32.29 2.27
3309 4578 6.516693 GCCAACATAAAAACTAGCCAGTCTTT 60.517 38.462 0.00 0.00 32.29 2.52
3310 4579 5.048013 GCCAACATAAAAACTAGCCAGTCTT 60.048 40.000 0.00 0.00 32.29 3.01
3311 4580 4.459337 GCCAACATAAAAACTAGCCAGTCT 59.541 41.667 0.00 0.00 32.29 3.24
3312 4581 4.459337 AGCCAACATAAAAACTAGCCAGTC 59.541 41.667 0.00 0.00 32.29 3.51
3313 4582 4.407365 AGCCAACATAAAAACTAGCCAGT 58.593 39.130 0.00 0.00 36.19 4.00
3314 4583 4.437390 CGAGCCAACATAAAAACTAGCCAG 60.437 45.833 0.00 0.00 0.00 4.85
3315 4584 3.438781 CGAGCCAACATAAAAACTAGCCA 59.561 43.478 0.00 0.00 0.00 4.75
3316 4585 3.730963 GCGAGCCAACATAAAAACTAGCC 60.731 47.826 0.00 0.00 0.00 3.93
3317 4586 3.426323 GCGAGCCAACATAAAAACTAGC 58.574 45.455 0.00 0.00 0.00 3.42
3318 4587 3.438781 TGGCGAGCCAACATAAAAACTAG 59.561 43.478 15.24 0.00 44.12 2.57
3319 4588 3.413327 TGGCGAGCCAACATAAAAACTA 58.587 40.909 15.24 0.00 44.12 2.24
3320 4589 2.235016 TGGCGAGCCAACATAAAAACT 58.765 42.857 15.24 0.00 44.12 2.66
3321 4590 2.715737 TGGCGAGCCAACATAAAAAC 57.284 45.000 15.24 0.00 44.12 2.43
3334 4603 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3335 4604 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3336 4605 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
3337 4606 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3338 4607 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
3339 4608 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
3340 4609 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
3341 4610 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
3342 4611 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
3343 4612 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
3344 4613 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
3345 4614 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
3346 4615 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
3347 4616 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
3348 4617 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
3349 4618 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
3350 4619 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
3351 4620 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
3352 4621 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
3363 4632 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
3364 4633 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
3365 4634 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
3366 4635 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
3367 4636 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
3368 4637 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
3369 4638 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
3370 4639 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
3371 4640 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
3372 4641 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
3373 4642 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
3374 4643 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
3375 4644 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
3376 4645 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
3377 4646 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
3378 4647 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
3379 4648 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
3380 4649 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
3381 4650 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
3393 4662 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
3394 4663 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
3395 4664 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
3396 4665 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
3397 4666 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
3398 4667 3.998341 GAGCGAGAGTAGTACTAGGATGG 59.002 52.174 1.87 0.00 0.00 3.51
3399 4668 4.633175 TGAGCGAGAGTAGTACTAGGATG 58.367 47.826 1.87 0.00 0.00 3.51
3400 4669 4.959560 TGAGCGAGAGTAGTACTAGGAT 57.040 45.455 1.87 0.00 0.00 3.24
3401 4670 4.161942 ACTTGAGCGAGAGTAGTACTAGGA 59.838 45.833 1.87 0.00 0.00 2.94
3402 4671 4.271533 CACTTGAGCGAGAGTAGTACTAGG 59.728 50.000 1.87 0.00 0.00 3.02
3403 4672 4.271533 CCACTTGAGCGAGAGTAGTACTAG 59.728 50.000 1.87 0.00 0.00 2.57
3404 4673 4.190001 CCACTTGAGCGAGAGTAGTACTA 58.810 47.826 1.88 0.00 0.00 1.82
3405 4674 3.011119 CCACTTGAGCGAGAGTAGTACT 58.989 50.000 1.37 1.37 0.00 2.73
3406 4675 2.097791 CCCACTTGAGCGAGAGTAGTAC 59.902 54.545 0.00 0.00 0.00 2.73
3407 4676 2.290768 ACCCACTTGAGCGAGAGTAGTA 60.291 50.000 0.00 0.00 0.00 1.82
3408 4677 1.178276 CCCACTTGAGCGAGAGTAGT 58.822 55.000 0.00 0.00 0.00 2.73
3409 4678 1.178276 ACCCACTTGAGCGAGAGTAG 58.822 55.000 0.00 0.00 0.00 2.57
3410 4679 1.629043 AACCCACTTGAGCGAGAGTA 58.371 50.000 0.00 0.00 0.00 2.59
3411 4680 0.759346 AAACCCACTTGAGCGAGAGT 59.241 50.000 0.00 0.00 0.00 3.24
3412 4681 1.270305 TGAAACCCACTTGAGCGAGAG 60.270 52.381 0.00 0.00 0.00 3.20
3413 4682 0.756294 TGAAACCCACTTGAGCGAGA 59.244 50.000 0.00 0.00 0.00 4.04
3414 4683 1.813513 ATGAAACCCACTTGAGCGAG 58.186 50.000 0.00 0.00 0.00 5.03
3415 4684 2.614481 GGTATGAAACCCACTTGAGCGA 60.614 50.000 0.00 0.00 43.16 4.93
3416 4685 1.737793 GGTATGAAACCCACTTGAGCG 59.262 52.381 0.00 0.00 43.16 5.03
3427 4696 3.136626 AGCCAGTCCCATAGGTATGAAAC 59.863 47.826 0.00 0.00 35.75 2.78
3428 4697 3.393687 AGCCAGTCCCATAGGTATGAAA 58.606 45.455 0.00 0.00 35.75 2.69
3429 4698 3.060479 AGCCAGTCCCATAGGTATGAA 57.940 47.619 0.00 0.00 35.75 2.57
3430 4699 2.795291 AGCCAGTCCCATAGGTATGA 57.205 50.000 0.00 0.00 35.75 2.15
3431 4700 3.511477 ACTAGCCAGTCCCATAGGTATG 58.489 50.000 0.00 0.00 0.00 2.39
3432 4701 3.925261 ACTAGCCAGTCCCATAGGTAT 57.075 47.619 0.00 0.00 0.00 2.73
3433 4702 3.700863 AACTAGCCAGTCCCATAGGTA 57.299 47.619 0.00 0.00 32.29 3.08
3434 4703 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
3435 4704 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
3436 4705 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
3437 4706 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
3438 4707 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
3439 4708 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
3440 4709 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
3441 4710 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
3442 4711 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
3443 4712 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
3444 4713 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
3445 4714 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
3446 4715 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
3447 4716 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
3448 4717 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
3449 4718 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
3450 4719 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
3451 4720 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
3452 4721 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
3453 4722 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
3464 4733 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3465 4734 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
3466 4735 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
3467 4736 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
3468 4737 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
3469 4738 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
3470 4739 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
3471 4740 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
3472 4741 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
3473 4742 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
3474 4743 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
3475 4744 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
3476 4745 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
3477 4746 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
3478 4747 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
3479 4748 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
3480 4749 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
3481 4750 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
3482 4751 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
3483 4752 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
3484 4753 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
3485 4754 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
3486 4755 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
3487 4756 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
3488 4757 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
3489 4758 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
3490 4759 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
3499 4768 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
3500 4769 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
3501 4770 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
3502 4771 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
3518 4787 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
3519 4788 3.632604 TGAACTCCGCCTATGTCTTCTAG 59.367 47.826 0.00 0.00 0.00 2.43
3520 4789 3.628008 TGAACTCCGCCTATGTCTTCTA 58.372 45.455 0.00 0.00 0.00 2.10
3521 4790 2.428890 CTGAACTCCGCCTATGTCTTCT 59.571 50.000 0.00 0.00 0.00 2.85
3522 4791 2.166664 ACTGAACTCCGCCTATGTCTTC 59.833 50.000 0.00 0.00 0.00 2.87
3523 4792 2.180276 ACTGAACTCCGCCTATGTCTT 58.820 47.619 0.00 0.00 0.00 3.01
3524 4793 1.853963 ACTGAACTCCGCCTATGTCT 58.146 50.000 0.00 0.00 0.00 3.41
3525 4794 3.130693 AGTTACTGAACTCCGCCTATGTC 59.869 47.826 0.00 0.00 42.50 3.06
3526 4795 3.097614 AGTTACTGAACTCCGCCTATGT 58.902 45.455 0.00 0.00 42.50 2.29
3527 4796 3.802948 AGTTACTGAACTCCGCCTATG 57.197 47.619 0.00 0.00 42.50 2.23
3528 4797 7.670559 AGAATATAGTTACTGAACTCCGCCTAT 59.329 37.037 0.00 0.00 42.50 2.57
3529 4798 7.002879 AGAATATAGTTACTGAACTCCGCCTA 58.997 38.462 0.00 0.00 42.50 3.93
3530 4799 5.834204 AGAATATAGTTACTGAACTCCGCCT 59.166 40.000 0.00 0.00 42.50 5.52
3531 4800 6.086785 AGAATATAGTTACTGAACTCCGCC 57.913 41.667 0.00 0.00 42.50 6.13
3532 4801 9.694137 ATAAAGAATATAGTTACTGAACTCCGC 57.306 33.333 0.00 0.00 42.50 5.54
3539 4808 9.455144 TGGGGGAATAAAGAATATAGTTACTGA 57.545 33.333 0.00 0.00 0.00 3.41
3573 4844 7.548097 ACGGCTACTCTATATGTTATCCAATG 58.452 38.462 0.00 0.00 0.00 2.82
3646 4917 3.387374 TCAAATGGTCCAAATGCACTGTT 59.613 39.130 0.00 0.00 0.00 3.16
3709 4980 6.721704 ACTTGAGCACATATATGACTGAGA 57.278 37.500 19.63 0.93 0.00 3.27
3710 4981 8.923683 CAATACTTGAGCACATATATGACTGAG 58.076 37.037 19.63 15.36 0.00 3.35
3778 5056 9.449719 GAGGGAAATAGAAGTCACTAAAAATGA 57.550 33.333 0.00 0.00 0.00 2.57
3788 5066 5.932619 TCGAATGAGGGAAATAGAAGTCA 57.067 39.130 0.00 0.00 0.00 3.41
3826 5104 7.250569 AGTCAATACTGCAATGGAAAAATACG 58.749 34.615 0.00 0.00 33.57 3.06
3839 5117 1.476891 GAGGGACGAGTCAATACTGCA 59.523 52.381 5.55 0.00 35.56 4.41
3961 5239 0.903942 GGAAAATGCAGGGCCATTCA 59.096 50.000 6.18 0.00 34.50 2.57
4042 5322 4.289238 TCGCCCAAGTTAAGATTAACCA 57.711 40.909 10.99 0.00 43.03 3.67
4256 5536 7.704271 TCTATAGTATGTAACAGCTGTGTGAC 58.296 38.462 22.49 18.59 38.44 3.67
4476 5760 1.620819 AGTCAGTCAGCGTGGAATTCT 59.379 47.619 5.23 0.00 0.00 2.40
4567 7509 3.706594 AGAAGGCGATCCATTTCTAGTCA 59.293 43.478 0.00 0.00 28.42 3.41
4580 7522 2.681097 GCTAACCTGGAAAGAAGGCGAT 60.681 50.000 0.00 0.00 38.48 4.58
4710 7677 4.037441 TGCATGGGAAAGCATGGG 57.963 55.556 0.00 0.00 35.51 4.00
4714 7681 1.272037 TGTCAGATGCATGGGAAAGCA 60.272 47.619 2.46 0.00 45.92 3.91
4715 7682 1.133790 GTGTCAGATGCATGGGAAAGC 59.866 52.381 2.46 0.00 0.00 3.51
4716 7683 2.439409 TGTGTCAGATGCATGGGAAAG 58.561 47.619 2.46 0.00 0.00 2.62
4717 7684 2.583024 TGTGTCAGATGCATGGGAAA 57.417 45.000 2.46 0.00 0.00 3.13
4718 7685 2.812836 ATGTGTCAGATGCATGGGAA 57.187 45.000 2.46 0.00 0.00 3.97
4719 7686 2.812836 AATGTGTCAGATGCATGGGA 57.187 45.000 2.46 0.00 0.00 4.37
4792 7759 6.678568 AATGTTAATTTTCACCACATGGGA 57.321 33.333 0.00 0.00 41.15 4.37
4833 7800 1.159098 TGTTGCGTAACACGTTCCCC 61.159 55.000 15.43 0.00 44.73 4.81
4834 7801 0.656785 TTGTTGCGTAACACGTTCCC 59.343 50.000 19.04 0.00 45.91 3.97
4855 7822 7.439955 TCGGTATGATCGTGTAGCATAATTTTT 59.560 33.333 0.00 0.00 38.16 1.94
4856 7823 6.926826 TCGGTATGATCGTGTAGCATAATTTT 59.073 34.615 0.00 0.00 38.16 1.82
4857 7824 6.452242 TCGGTATGATCGTGTAGCATAATTT 58.548 36.000 0.00 0.00 38.16 1.82
4858 7825 6.020971 TCGGTATGATCGTGTAGCATAATT 57.979 37.500 0.00 0.00 38.16 1.40
4859 7826 5.393135 CCTCGGTATGATCGTGTAGCATAAT 60.393 44.000 0.00 0.00 38.16 1.28
4879 7847 2.546795 GCCATCTCCATAGTGTTCCTCG 60.547 54.545 0.00 0.00 0.00 4.63
4880 7848 2.703007 AGCCATCTCCATAGTGTTCCTC 59.297 50.000 0.00 0.00 0.00 3.71
4888 7856 4.897509 TCATTACCAGCCATCTCCATAG 57.102 45.455 0.00 0.00 0.00 2.23
4892 7860 3.777106 TGATCATTACCAGCCATCTCC 57.223 47.619 0.00 0.00 0.00 3.71
4901 7869 5.630121 AGTTGGTGAGTTTGATCATTACCA 58.370 37.500 7.22 7.22 0.00 3.25
4919 7887 0.460311 CCCGGTACTCTGCTAGTTGG 59.540 60.000 0.00 0.00 39.80 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.