Multiple sequence alignment - TraesCS3D01G245700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G245700 chr3D 100.000 2051 0 0 2148 4198 341888511 341886461 0.000000e+00 3788.0
1 TraesCS3D01G245700 chr3D 100.000 1731 0 0 1 1731 341890658 341888928 0.000000e+00 3197.0
2 TraesCS3D01G245700 chr3D 84.622 1112 107 23 68 1128 194933673 194932575 0.000000e+00 1048.0
3 TraesCS3D01G245700 chr3D 83.916 286 40 5 1127 1408 14091612 14091329 6.920000e-68 268.0
4 TraesCS3D01G245700 chr3D 94.444 36 2 0 5 40 85014279 85014314 5.860000e-04 56.5
5 TraesCS3D01G245700 chr3A 97.839 1712 33 3 2148 3858 461151081 461152789 0.000000e+00 2953.0
6 TraesCS3D01G245700 chr3A 84.022 1114 114 33 69 1127 677619391 677618287 0.000000e+00 1013.0
7 TraesCS3D01G245700 chr3A 82.960 1115 100 40 68 1128 635033018 635034096 0.000000e+00 924.0
8 TraesCS3D01G245700 chr3A 96.746 338 9 2 3862 4198 461152866 461153202 2.830000e-156 562.0
9 TraesCS3D01G245700 chr3A 95.719 327 12 2 1405 1731 461150394 461150718 3.720000e-145 525.0
10 TraesCS3D01G245700 chr3A 89.418 189 17 3 1117 1305 528513380 528513565 7.020000e-58 235.0
11 TraesCS3D01G245700 chr3A 94.118 68 1 3 3217 3283 596871577 596871642 2.670000e-17 100.0
12 TraesCS3D01G245700 chr3B 97.275 1725 43 4 2148 3870 440680001 440678279 0.000000e+00 2922.0
13 TraesCS3D01G245700 chr3B 96.450 338 10 2 3862 4198 440678216 440677880 1.320000e-154 556.0
14 TraesCS3D01G245700 chr3B 96.308 325 12 0 1407 1731 440680780 440680456 6.180000e-148 534.0
15 TraesCS3D01G245700 chr2D 86.109 1087 116 22 68 1127 563022661 563023739 0.000000e+00 1138.0
16 TraesCS3D01G245700 chr2D 84.802 1112 107 32 67 1127 534127575 534128675 0.000000e+00 1061.0
17 TraesCS3D01G245700 chr2D 84.220 1109 120 25 68 1127 614232872 614233974 0.000000e+00 1027.0
18 TraesCS3D01G245700 chr2D 81.818 286 46 6 1127 1408 629435878 629435595 7.020000e-58 235.0
19 TraesCS3D01G245700 chr7D 85.846 1088 106 27 77 1127 575474612 575475688 0.000000e+00 1112.0
20 TraesCS3D01G245700 chr7D 86.282 780 88 17 359 1127 17005810 17005039 0.000000e+00 830.0
21 TraesCS3D01G245700 chr7D 82.957 487 40 23 67 511 16566409 16566894 2.350000e-107 399.0
22 TraesCS3D01G245700 chr7D 81.977 516 51 18 67 541 39186388 39185874 2.350000e-107 399.0
23 TraesCS3D01G245700 chr7D 96.610 59 1 1 3223 3281 299189193 299189250 3.450000e-16 97.1
24 TraesCS3D01G245700 chr5D 83.943 1121 109 38 69 1129 511615853 511614744 0.000000e+00 1007.0
25 TraesCS3D01G245700 chr5D 90.226 133 13 0 3892 4024 446174821 446174953 1.550000e-39 174.0
26 TraesCS3D01G245700 chr5D 96.667 60 2 0 3223 3282 483269429 483269488 2.670000e-17 100.0
27 TraesCS3D01G245700 chr5A 84.011 1107 98 33 67 1128 256581622 256582694 0.000000e+00 990.0
28 TraesCS3D01G245700 chr5A 90.226 133 13 0 3892 4024 607275436 607275568 1.550000e-39 174.0
29 TraesCS3D01G245700 chr5A 96.610 59 1 1 3223 3281 537122582 537122639 3.450000e-16 97.1
30 TraesCS3D01G245700 chrUn 82.500 1120 105 38 67 1127 29985400 29986487 0.000000e+00 898.0
31 TraesCS3D01G245700 chrUn 81.315 289 39 13 1127 1408 25037687 25037407 1.960000e-53 220.0
32 TraesCS3D01G245700 chrUn 89.474 133 14 0 3892 4024 346595457 346595325 7.220000e-38 169.0
33 TraesCS3D01G245700 chrUn 89.474 133 14 0 3892 4024 389446073 389446205 7.220000e-38 169.0
34 TraesCS3D01G245700 chrUn 89.474 133 14 0 3892 4024 444245395 444245263 7.220000e-38 169.0
35 TraesCS3D01G245700 chr6B 82.188 1106 128 43 68 1134 680436709 680435634 0.000000e+00 887.0
36 TraesCS3D01G245700 chr6B 88.889 63 7 0 7 69 594660338 594660276 1.250000e-10 78.7
37 TraesCS3D01G245700 chr6D 80.501 1118 149 42 68 1127 76995699 76996805 0.000000e+00 793.0
38 TraesCS3D01G245700 chr6D 89.474 133 14 0 3892 4024 135463406 135463274 7.220000e-38 169.0
39 TraesCS3D01G245700 chr4B 85.006 787 99 16 350 1125 170976773 170977551 0.000000e+00 782.0
40 TraesCS3D01G245700 chr4B 82.986 288 37 9 1127 1407 500133896 500133614 2.510000e-62 250.0
41 TraesCS3D01G245700 chr2A 81.405 968 106 39 67 974 214421420 214422373 0.000000e+00 723.0
42 TraesCS3D01G245700 chr2A 93.846 65 2 2 3223 3287 24138154 24138216 3.450000e-16 97.1
43 TraesCS3D01G245700 chr4A 81.054 892 130 28 253 1128 715554170 715555038 0.000000e+00 675.0
44 TraesCS3D01G245700 chr2B 82.353 289 39 10 1127 1408 495910974 495910691 1.510000e-59 241.0
45 TraesCS3D01G245700 chr2B 96.610 59 1 1 3223 3281 601733469 601733526 3.450000e-16 97.1
46 TraesCS3D01G245700 chr1D 81.849 292 47 4 1121 1408 439127532 439127821 1.510000e-59 241.0
47 TraesCS3D01G245700 chr1D 89.474 133 14 0 3892 4024 254397073 254396941 7.220000e-38 169.0
48 TraesCS3D01G245700 chr5B 86.294 197 26 1 1127 1323 625135186 625134991 3.290000e-51 213.0
49 TraesCS3D01G245700 chr5B 85.787 197 27 1 1127 1323 628725840 628725645 1.530000e-49 207.0
50 TraesCS3D01G245700 chr4D 96.721 61 1 1 3223 3283 421896460 421896519 2.670000e-17 100.0
51 TraesCS3D01G245700 chr7A 95.122 41 2 0 29 69 85591923 85591963 9.740000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G245700 chr3D 341886461 341890658 4197 True 3492.500000 3788 100.000000 1 4198 2 chr3D.!!$R3 4197
1 TraesCS3D01G245700 chr3D 194932575 194933673 1098 True 1048.000000 1048 84.622000 68 1128 1 chr3D.!!$R2 1060
2 TraesCS3D01G245700 chr3A 461150394 461153202 2808 False 1346.666667 2953 96.768000 1405 4198 3 chr3A.!!$F4 2793
3 TraesCS3D01G245700 chr3A 677618287 677619391 1104 True 1013.000000 1013 84.022000 69 1127 1 chr3A.!!$R1 1058
4 TraesCS3D01G245700 chr3A 635033018 635034096 1078 False 924.000000 924 82.960000 68 1128 1 chr3A.!!$F3 1060
5 TraesCS3D01G245700 chr3B 440677880 440680780 2900 True 1337.333333 2922 96.677667 1407 4198 3 chr3B.!!$R1 2791
6 TraesCS3D01G245700 chr2D 563022661 563023739 1078 False 1138.000000 1138 86.109000 68 1127 1 chr2D.!!$F2 1059
7 TraesCS3D01G245700 chr2D 534127575 534128675 1100 False 1061.000000 1061 84.802000 67 1127 1 chr2D.!!$F1 1060
8 TraesCS3D01G245700 chr2D 614232872 614233974 1102 False 1027.000000 1027 84.220000 68 1127 1 chr2D.!!$F3 1059
9 TraesCS3D01G245700 chr7D 575474612 575475688 1076 False 1112.000000 1112 85.846000 77 1127 1 chr7D.!!$F3 1050
10 TraesCS3D01G245700 chr7D 17005039 17005810 771 True 830.000000 830 86.282000 359 1127 1 chr7D.!!$R1 768
11 TraesCS3D01G245700 chr7D 39185874 39186388 514 True 399.000000 399 81.977000 67 541 1 chr7D.!!$R2 474
12 TraesCS3D01G245700 chr5D 511614744 511615853 1109 True 1007.000000 1007 83.943000 69 1129 1 chr5D.!!$R1 1060
13 TraesCS3D01G245700 chr5A 256581622 256582694 1072 False 990.000000 990 84.011000 67 1128 1 chr5A.!!$F1 1061
14 TraesCS3D01G245700 chrUn 29985400 29986487 1087 False 898.000000 898 82.500000 67 1127 1 chrUn.!!$F1 1060
15 TraesCS3D01G245700 chr6B 680435634 680436709 1075 True 887.000000 887 82.188000 68 1134 1 chr6B.!!$R2 1066
16 TraesCS3D01G245700 chr6D 76995699 76996805 1106 False 793.000000 793 80.501000 68 1127 1 chr6D.!!$F1 1059
17 TraesCS3D01G245700 chr4B 170976773 170977551 778 False 782.000000 782 85.006000 350 1125 1 chr4B.!!$F1 775
18 TraesCS3D01G245700 chr2A 214421420 214422373 953 False 723.000000 723 81.405000 67 974 1 chr2A.!!$F2 907
19 TraesCS3D01G245700 chr4A 715554170 715555038 868 False 675.000000 675 81.054000 253 1128 1 chr4A.!!$F1 875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.322546 AATTGTGACTTCCTCCGCCC 60.323 55.0 0.0 0.0 0.00 6.13 F
1187 1304 0.039798 TGTCCGTCGAAGAAACTCCG 60.040 55.0 0.0 0.0 39.69 4.63 F
1382 1499 0.036671 GGACGTTTGAGGGTCGGATT 60.037 55.0 0.0 0.0 33.99 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 1480 0.036671 AATCCGACCCTCAAACGTCC 60.037 55.000 0.00 0.0 0.0 4.79 R
2982 3138 1.074405 AGATGGAAAGTGCTTGGCTCA 59.926 47.619 0.00 0.0 0.0 4.26 R
3365 3521 2.939103 GCAACAACTCTCTCACTTGTGT 59.061 45.455 0.46 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.125106 CGGAAGGAGAAAGGGCCG 60.125 66.667 0.00 0.00 0.00 6.13
25 26 2.272471 GGAAGGAGAAAGGGCCGG 59.728 66.667 0.00 0.00 0.00 6.13
26 27 2.438614 GAAGGAGAAAGGGCCGGC 60.439 66.667 21.18 21.18 0.00 6.13
27 28 4.410400 AAGGAGAAAGGGCCGGCG 62.410 66.667 22.54 0.00 0.00 6.46
29 30 4.840005 GGAGAAAGGGCCGGCGAG 62.840 72.222 22.54 0.00 0.00 5.03
30 31 4.840005 GAGAAAGGGCCGGCGAGG 62.840 72.222 22.54 0.00 44.97 4.63
32 33 4.404098 GAAAGGGCCGGCGAGGAA 62.404 66.667 22.54 0.00 45.00 3.36
33 34 3.912745 GAAAGGGCCGGCGAGGAAA 62.913 63.158 22.54 0.00 45.00 3.13
34 35 3.282374 AAAGGGCCGGCGAGGAAAT 62.282 57.895 22.54 0.00 45.00 2.17
35 36 2.781431 AAAGGGCCGGCGAGGAAATT 62.781 55.000 22.54 5.38 45.00 1.82
36 37 3.518068 GGGCCGGCGAGGAAATTG 61.518 66.667 22.54 0.00 45.00 2.32
37 38 2.750237 GGCCGGCGAGGAAATTGT 60.750 61.111 22.54 0.00 45.00 2.71
38 39 2.485122 GCCGGCGAGGAAATTGTG 59.515 61.111 12.58 0.00 45.00 3.33
39 40 2.038269 GCCGGCGAGGAAATTGTGA 61.038 57.895 12.58 0.00 45.00 3.58
40 41 1.794222 CCGGCGAGGAAATTGTGAC 59.206 57.895 9.30 0.00 45.00 3.67
41 42 0.673644 CCGGCGAGGAAATTGTGACT 60.674 55.000 9.30 0.00 45.00 3.41
42 43 1.156736 CGGCGAGGAAATTGTGACTT 58.843 50.000 0.00 0.00 0.00 3.01
43 44 1.128692 CGGCGAGGAAATTGTGACTTC 59.871 52.381 0.00 0.00 0.00 3.01
44 45 1.468914 GGCGAGGAAATTGTGACTTCC 59.531 52.381 0.00 0.00 41.32 3.46
49 50 1.468914 GGAAATTGTGACTTCCTCCGC 59.531 52.381 0.00 0.00 38.48 5.54
50 51 1.468914 GAAATTGTGACTTCCTCCGCC 59.531 52.381 0.00 0.00 0.00 6.13
51 52 0.322546 AATTGTGACTTCCTCCGCCC 60.323 55.000 0.00 0.00 0.00 6.13
52 53 1.201429 ATTGTGACTTCCTCCGCCCT 61.201 55.000 0.00 0.00 0.00 5.19
53 54 1.415672 TTGTGACTTCCTCCGCCCTT 61.416 55.000 0.00 0.00 0.00 3.95
54 55 1.079057 GTGACTTCCTCCGCCCTTC 60.079 63.158 0.00 0.00 0.00 3.46
55 56 2.291043 TGACTTCCTCCGCCCTTCC 61.291 63.158 0.00 0.00 0.00 3.46
56 57 1.990614 GACTTCCTCCGCCCTTCCT 60.991 63.158 0.00 0.00 0.00 3.36
57 58 1.539124 ACTTCCTCCGCCCTTCCTT 60.539 57.895 0.00 0.00 0.00 3.36
58 59 1.078143 CTTCCTCCGCCCTTCCTTG 60.078 63.158 0.00 0.00 0.00 3.61
59 60 1.842381 CTTCCTCCGCCCTTCCTTGT 61.842 60.000 0.00 0.00 0.00 3.16
60 61 1.423794 TTCCTCCGCCCTTCCTTGTT 61.424 55.000 0.00 0.00 0.00 2.83
61 62 1.377333 CCTCCGCCCTTCCTTGTTC 60.377 63.158 0.00 0.00 0.00 3.18
62 63 1.679898 CTCCGCCCTTCCTTGTTCT 59.320 57.895 0.00 0.00 0.00 3.01
63 64 0.674895 CTCCGCCCTTCCTTGTTCTG 60.675 60.000 0.00 0.00 0.00 3.02
64 65 1.073199 CCGCCCTTCCTTGTTCTGT 59.927 57.895 0.00 0.00 0.00 3.41
65 66 0.537371 CCGCCCTTCCTTGTTCTGTT 60.537 55.000 0.00 0.00 0.00 3.16
103 106 4.065110 GCAAGGTGCGTTTCTCCT 57.935 55.556 0.00 0.00 40.23 3.69
245 259 2.201927 GGCCCATAAAAGCCCTGTG 58.798 57.895 0.00 0.00 43.76 3.66
249 279 0.532115 CCATAAAAGCCCTGTGCACC 59.468 55.000 15.69 0.00 44.83 5.01
266 297 2.671070 GCACCGCTGGAAAACCTTATTG 60.671 50.000 1.50 0.00 0.00 1.90
288 319 1.300931 ACACAGCGCGGCATATAGG 60.301 57.895 8.83 0.00 0.00 2.57
336 378 3.383698 TGGTCCGGCCCATTTTTATTA 57.616 42.857 0.00 0.00 36.04 0.98
457 527 7.762159 TCTTATAATTCAAAATTTGTTCCCGCC 59.238 33.333 5.56 0.00 0.00 6.13
693 781 6.959671 TGAATGTTCAAAACAAGTTTCCAC 57.040 33.333 0.00 0.00 45.86 4.02
741 830 4.400529 AAATGTTTGTTTCTCCGCCTTT 57.599 36.364 0.00 0.00 0.00 3.11
757 849 4.218852 CCGCCTTTAAAATGGTCCTGTTTA 59.781 41.667 0.00 0.00 0.00 2.01
889 1002 2.050269 AGGTCACCACAACCTCGAG 58.950 57.895 5.13 5.13 43.85 4.04
892 1005 1.202604 GGTCACCACAACCTCGAGAAA 60.203 52.381 15.71 0.00 33.78 2.52
990 1105 3.055719 CGCGGGCCAAACATGACT 61.056 61.111 4.39 0.00 0.00 3.41
1031 1146 0.741326 TGCTCTATCGCTCCACTGTC 59.259 55.000 0.00 0.00 0.00 3.51
1166 1283 8.800370 TCATAAGTTTGTAGTATGGATTTGCA 57.200 30.769 0.00 0.00 0.00 4.08
1167 1284 8.673711 TCATAAGTTTGTAGTATGGATTTGCAC 58.326 33.333 0.00 0.00 0.00 4.57
1168 1285 8.677300 CATAAGTTTGTAGTATGGATTTGCACT 58.323 33.333 0.00 0.00 0.00 4.40
1169 1286 6.500684 AGTTTGTAGTATGGATTTGCACTG 57.499 37.500 0.00 0.00 0.00 3.66
1170 1287 6.003950 AGTTTGTAGTATGGATTTGCACTGT 58.996 36.000 0.00 0.00 0.00 3.55
1171 1288 6.149474 AGTTTGTAGTATGGATTTGCACTGTC 59.851 38.462 0.00 0.00 0.00 3.51
1172 1289 4.513442 TGTAGTATGGATTTGCACTGTCC 58.487 43.478 4.62 4.62 0.00 4.02
1173 1290 2.632377 AGTATGGATTTGCACTGTCCG 58.368 47.619 6.69 0.00 34.72 4.79
1174 1291 2.027192 AGTATGGATTTGCACTGTCCGT 60.027 45.455 9.97 9.97 34.72 4.69
1175 1292 1.453155 ATGGATTTGCACTGTCCGTC 58.547 50.000 6.69 0.00 34.72 4.79
1176 1293 0.948623 TGGATTTGCACTGTCCGTCG 60.949 55.000 6.69 0.00 34.72 5.12
1177 1294 0.669318 GGATTTGCACTGTCCGTCGA 60.669 55.000 0.00 0.00 0.00 4.20
1178 1295 1.144969 GATTTGCACTGTCCGTCGAA 58.855 50.000 0.00 0.00 0.00 3.71
1179 1296 1.126846 GATTTGCACTGTCCGTCGAAG 59.873 52.381 0.00 0.00 0.00 3.79
1180 1297 0.103390 TTTGCACTGTCCGTCGAAGA 59.897 50.000 0.00 0.00 0.00 2.87
1181 1298 0.103390 TTGCACTGTCCGTCGAAGAA 59.897 50.000 0.00 0.00 39.69 2.52
1182 1299 0.103390 TGCACTGTCCGTCGAAGAAA 59.897 50.000 0.00 0.00 39.69 2.52
1183 1300 0.507358 GCACTGTCCGTCGAAGAAAC 59.493 55.000 0.00 0.00 39.69 2.78
1184 1301 1.868519 GCACTGTCCGTCGAAGAAACT 60.869 52.381 0.00 0.00 39.69 2.66
1185 1302 2.052157 CACTGTCCGTCGAAGAAACTC 58.948 52.381 0.00 0.00 39.69 3.01
1186 1303 1.000496 ACTGTCCGTCGAAGAAACTCC 60.000 52.381 0.00 0.00 39.69 3.85
1187 1304 0.039798 TGTCCGTCGAAGAAACTCCG 60.040 55.000 0.00 0.00 39.69 4.63
1188 1305 0.239347 GTCCGTCGAAGAAACTCCGA 59.761 55.000 0.00 0.00 39.69 4.55
1189 1306 1.135460 GTCCGTCGAAGAAACTCCGAT 60.135 52.381 0.00 0.00 39.69 4.18
1190 1307 1.135489 TCCGTCGAAGAAACTCCGATG 60.135 52.381 0.00 0.00 39.69 3.84
1191 1308 1.135489 CCGTCGAAGAAACTCCGATGA 60.135 52.381 0.00 0.00 40.57 2.92
1192 1309 2.592194 CGTCGAAGAAACTCCGATGAA 58.408 47.619 0.00 0.00 40.57 2.57
1193 1310 3.179830 CGTCGAAGAAACTCCGATGAAT 58.820 45.455 0.00 0.00 40.57 2.57
1194 1311 3.240861 CGTCGAAGAAACTCCGATGAATC 59.759 47.826 0.00 0.00 40.57 2.52
1195 1312 4.174009 GTCGAAGAAACTCCGATGAATCA 58.826 43.478 0.00 0.00 39.69 2.57
1196 1313 4.806247 GTCGAAGAAACTCCGATGAATCAT 59.194 41.667 0.00 0.00 39.69 2.45
1197 1314 4.805719 TCGAAGAAACTCCGATGAATCATG 59.194 41.667 0.00 0.00 0.00 3.07
1198 1315 4.568359 CGAAGAAACTCCGATGAATCATGT 59.432 41.667 0.00 0.00 0.00 3.21
1199 1316 5.063944 CGAAGAAACTCCGATGAATCATGTT 59.936 40.000 0.00 0.00 0.00 2.71
1200 1317 6.402550 CGAAGAAACTCCGATGAATCATGTTT 60.403 38.462 0.00 4.82 0.00 2.83
1201 1318 6.428385 AGAAACTCCGATGAATCATGTTTC 57.572 37.500 20.21 20.21 38.57 2.78
1202 1319 6.176183 AGAAACTCCGATGAATCATGTTTCT 58.824 36.000 22.75 22.75 40.74 2.52
1203 1320 6.656693 AGAAACTCCGATGAATCATGTTTCTT 59.343 34.615 22.75 10.44 41.60 2.52
1204 1321 6.824305 AACTCCGATGAATCATGTTTCTTT 57.176 33.333 15.67 5.47 0.00 2.52
1205 1322 6.824305 ACTCCGATGAATCATGTTTCTTTT 57.176 33.333 15.67 3.38 0.00 2.27
1206 1323 6.615088 ACTCCGATGAATCATGTTTCTTTTG 58.385 36.000 15.67 8.42 0.00 2.44
1207 1324 6.207417 ACTCCGATGAATCATGTTTCTTTTGT 59.793 34.615 15.67 6.43 0.00 2.83
1208 1325 6.611381 TCCGATGAATCATGTTTCTTTTGTC 58.389 36.000 15.67 7.02 0.00 3.18
1209 1326 6.430925 TCCGATGAATCATGTTTCTTTTGTCT 59.569 34.615 15.67 0.00 0.00 3.41
1210 1327 6.525628 CCGATGAATCATGTTTCTTTTGTCTG 59.474 38.462 15.67 2.65 0.00 3.51
1211 1328 6.525628 CGATGAATCATGTTTCTTTTGTCTGG 59.474 38.462 15.67 0.00 0.00 3.86
1212 1329 6.713762 TGAATCATGTTTCTTTTGTCTGGT 57.286 33.333 15.67 0.00 0.00 4.00
1213 1330 7.111247 TGAATCATGTTTCTTTTGTCTGGTT 57.889 32.000 15.67 0.00 0.00 3.67
1214 1331 8.231692 TGAATCATGTTTCTTTTGTCTGGTTA 57.768 30.769 15.67 0.00 0.00 2.85
1215 1332 8.690884 TGAATCATGTTTCTTTTGTCTGGTTAA 58.309 29.630 15.67 0.00 0.00 2.01
1216 1333 9.696917 GAATCATGTTTCTTTTGTCTGGTTAAT 57.303 29.630 8.92 0.00 0.00 1.40
1217 1334 9.696917 AATCATGTTTCTTTTGTCTGGTTAATC 57.303 29.630 0.00 0.00 0.00 1.75
1218 1335 7.657336 TCATGTTTCTTTTGTCTGGTTAATCC 58.343 34.615 0.00 0.00 0.00 3.01
1219 1336 6.067263 TGTTTCTTTTGTCTGGTTAATCCG 57.933 37.500 0.00 0.00 39.52 4.18
1220 1337 5.823570 TGTTTCTTTTGTCTGGTTAATCCGA 59.176 36.000 0.00 0.00 39.52 4.55
1221 1338 6.488683 TGTTTCTTTTGTCTGGTTAATCCGAT 59.511 34.615 0.00 0.00 39.52 4.18
1222 1339 6.494893 TTCTTTTGTCTGGTTAATCCGATG 57.505 37.500 0.00 0.00 39.52 3.84
1223 1340 5.800296 TCTTTTGTCTGGTTAATCCGATGA 58.200 37.500 0.00 0.00 39.52 2.92
1224 1341 6.234920 TCTTTTGTCTGGTTAATCCGATGAA 58.765 36.000 0.00 0.00 39.52 2.57
1225 1342 5.873179 TTTGTCTGGTTAATCCGATGAAC 57.127 39.130 0.27 0.27 39.52 3.18
1226 1343 4.819105 TGTCTGGTTAATCCGATGAACT 57.181 40.909 8.30 0.00 39.52 3.01
1227 1344 4.503910 TGTCTGGTTAATCCGATGAACTG 58.496 43.478 8.30 3.21 39.52 3.16
1228 1345 3.309954 GTCTGGTTAATCCGATGAACTGC 59.690 47.826 8.30 0.00 39.52 4.40
1229 1346 2.276201 TGGTTAATCCGATGAACTGCG 58.724 47.619 8.30 0.00 39.52 5.18
1230 1347 1.003866 GGTTAATCCGATGAACTGCGC 60.004 52.381 0.00 0.00 0.00 6.09
1231 1348 1.933853 GTTAATCCGATGAACTGCGCT 59.066 47.619 9.73 0.00 0.00 5.92
1232 1349 2.309528 TAATCCGATGAACTGCGCTT 57.690 45.000 9.73 0.00 0.00 4.68
1233 1350 1.453155 AATCCGATGAACTGCGCTTT 58.547 45.000 9.73 0.78 0.00 3.51
1234 1351 0.729116 ATCCGATGAACTGCGCTTTG 59.271 50.000 9.73 0.99 0.00 2.77
1235 1352 0.320334 TCCGATGAACTGCGCTTTGA 60.320 50.000 9.73 0.00 0.00 2.69
1236 1353 0.729116 CCGATGAACTGCGCTTTGAT 59.271 50.000 9.73 0.87 0.00 2.57
1237 1354 1.267732 CCGATGAACTGCGCTTTGATC 60.268 52.381 9.73 10.10 0.00 2.92
1238 1355 1.662629 CGATGAACTGCGCTTTGATCT 59.337 47.619 9.73 0.00 0.00 2.75
1239 1356 2.094894 CGATGAACTGCGCTTTGATCTT 59.905 45.455 9.73 1.77 0.00 2.40
1240 1357 2.975410 TGAACTGCGCTTTGATCTTG 57.025 45.000 9.73 0.00 0.00 3.02
1241 1358 2.221169 TGAACTGCGCTTTGATCTTGT 58.779 42.857 9.73 0.00 0.00 3.16
1242 1359 2.031769 TGAACTGCGCTTTGATCTTGTG 60.032 45.455 9.73 0.00 0.00 3.33
1243 1360 1.597742 ACTGCGCTTTGATCTTGTGT 58.402 45.000 9.73 0.00 0.00 3.72
1244 1361 1.949525 ACTGCGCTTTGATCTTGTGTT 59.050 42.857 9.73 0.00 0.00 3.32
1245 1362 2.358898 ACTGCGCTTTGATCTTGTGTTT 59.641 40.909 9.73 0.00 0.00 2.83
1246 1363 3.181487 ACTGCGCTTTGATCTTGTGTTTT 60.181 39.130 9.73 0.00 0.00 2.43
1247 1364 4.036262 ACTGCGCTTTGATCTTGTGTTTTA 59.964 37.500 9.73 0.00 0.00 1.52
1248 1365 5.119931 TGCGCTTTGATCTTGTGTTTTAT 57.880 34.783 9.73 0.00 0.00 1.40
1249 1366 6.072728 ACTGCGCTTTGATCTTGTGTTTTATA 60.073 34.615 9.73 0.00 0.00 0.98
1250 1367 6.851609 TGCGCTTTGATCTTGTGTTTTATAT 58.148 32.000 9.73 0.00 0.00 0.86
1251 1368 7.980062 TGCGCTTTGATCTTGTGTTTTATATA 58.020 30.769 9.73 0.00 0.00 0.86
1252 1369 8.122330 TGCGCTTTGATCTTGTGTTTTATATAG 58.878 33.333 9.73 0.00 0.00 1.31
1253 1370 7.112148 GCGCTTTGATCTTGTGTTTTATATAGC 59.888 37.037 0.00 0.00 0.00 2.97
1254 1371 7.318909 CGCTTTGATCTTGTGTTTTATATAGCG 59.681 37.037 0.00 0.00 38.29 4.26
1255 1372 8.122952 GCTTTGATCTTGTGTTTTATATAGCGT 58.877 33.333 0.00 0.00 0.00 5.07
1256 1373 9.425893 CTTTGATCTTGTGTTTTATATAGCGTG 57.574 33.333 0.00 0.00 0.00 5.34
1257 1374 7.477144 TGATCTTGTGTTTTATATAGCGTGG 57.523 36.000 0.00 0.00 0.00 4.94
1258 1375 5.728351 TCTTGTGTTTTATATAGCGTGGC 57.272 39.130 0.00 0.00 0.00 5.01
1259 1376 5.179533 TCTTGTGTTTTATATAGCGTGGCA 58.820 37.500 0.00 0.00 0.00 4.92
1260 1377 5.820423 TCTTGTGTTTTATATAGCGTGGCAT 59.180 36.000 0.00 0.00 0.00 4.40
1261 1378 5.416862 TGTGTTTTATATAGCGTGGCATG 57.583 39.130 1.31 1.31 0.00 4.06
1262 1379 5.119694 TGTGTTTTATATAGCGTGGCATGA 58.880 37.500 11.71 0.00 0.00 3.07
1263 1380 5.586643 TGTGTTTTATATAGCGTGGCATGAA 59.413 36.000 11.71 0.00 0.00 2.57
1264 1381 6.262049 TGTGTTTTATATAGCGTGGCATGAAT 59.738 34.615 11.71 5.59 0.00 2.57
1265 1382 7.138736 GTGTTTTATATAGCGTGGCATGAATT 58.861 34.615 11.71 0.00 0.00 2.17
1266 1383 7.113404 GTGTTTTATATAGCGTGGCATGAATTG 59.887 37.037 11.71 0.00 0.00 2.32
1283 1400 6.998968 TGAATTGCATGGTTTTGAAGTTTT 57.001 29.167 0.00 0.00 0.00 2.43
1284 1401 6.783162 TGAATTGCATGGTTTTGAAGTTTTG 58.217 32.000 0.00 0.00 0.00 2.44
1285 1402 5.754543 ATTGCATGGTTTTGAAGTTTTGG 57.245 34.783 0.00 0.00 0.00 3.28
1286 1403 4.478206 TGCATGGTTTTGAAGTTTTGGA 57.522 36.364 0.00 0.00 0.00 3.53
1287 1404 5.033589 TGCATGGTTTTGAAGTTTTGGAT 57.966 34.783 0.00 0.00 0.00 3.41
1288 1405 6.166984 TGCATGGTTTTGAAGTTTTGGATA 57.833 33.333 0.00 0.00 0.00 2.59
1289 1406 6.767456 TGCATGGTTTTGAAGTTTTGGATAT 58.233 32.000 0.00 0.00 0.00 1.63
1290 1407 6.649973 TGCATGGTTTTGAAGTTTTGGATATG 59.350 34.615 0.00 0.00 0.00 1.78
1291 1408 6.873076 GCATGGTTTTGAAGTTTTGGATATGA 59.127 34.615 0.00 0.00 0.00 2.15
1292 1409 7.387397 GCATGGTTTTGAAGTTTTGGATATGAA 59.613 33.333 0.00 0.00 0.00 2.57
1293 1410 8.928733 CATGGTTTTGAAGTTTTGGATATGAAG 58.071 33.333 0.00 0.00 0.00 3.02
1294 1411 7.441017 TGGTTTTGAAGTTTTGGATATGAAGG 58.559 34.615 0.00 0.00 0.00 3.46
1295 1412 7.288852 TGGTTTTGAAGTTTTGGATATGAAGGA 59.711 33.333 0.00 0.00 0.00 3.36
1296 1413 7.598869 GGTTTTGAAGTTTTGGATATGAAGGAC 59.401 37.037 0.00 0.00 0.00 3.85
1297 1414 6.494893 TTGAAGTTTTGGATATGAAGGACG 57.505 37.500 0.00 0.00 0.00 4.79
1298 1415 4.394920 TGAAGTTTTGGATATGAAGGACGC 59.605 41.667 0.00 0.00 0.00 5.19
1299 1416 2.936498 AGTTTTGGATATGAAGGACGCG 59.064 45.455 3.53 3.53 0.00 6.01
1300 1417 2.933906 GTTTTGGATATGAAGGACGCGA 59.066 45.455 15.93 0.00 0.00 5.87
1301 1418 2.509052 TTGGATATGAAGGACGCGAG 57.491 50.000 15.93 0.00 0.00 5.03
1312 1429 3.917870 ACGCGAGTGTGAAAGACG 58.082 55.556 15.93 0.00 46.97 4.18
1313 1430 1.357690 ACGCGAGTGTGAAAGACGA 59.642 52.632 15.93 0.00 46.97 4.20
1314 1431 0.248743 ACGCGAGTGTGAAAGACGAA 60.249 50.000 15.93 0.00 46.97 3.85
1315 1432 0.850217 CGCGAGTGTGAAAGACGAAA 59.150 50.000 0.00 0.00 33.85 3.46
1316 1433 1.455786 CGCGAGTGTGAAAGACGAAAT 59.544 47.619 0.00 0.00 33.85 2.17
1317 1434 2.659757 CGCGAGTGTGAAAGACGAAATA 59.340 45.455 0.00 0.00 33.85 1.40
1318 1435 3.303495 CGCGAGTGTGAAAGACGAAATAT 59.697 43.478 0.00 0.00 33.85 1.28
1319 1436 4.497966 CGCGAGTGTGAAAGACGAAATATA 59.502 41.667 0.00 0.00 33.85 0.86
1320 1437 5.004061 CGCGAGTGTGAAAGACGAAATATAA 59.996 40.000 0.00 0.00 33.85 0.98
1321 1438 6.403615 GCGAGTGTGAAAGACGAAATATAAG 58.596 40.000 0.00 0.00 33.85 1.73
1322 1439 6.508088 GCGAGTGTGAAAGACGAAATATAAGG 60.508 42.308 0.00 0.00 33.85 2.69
1323 1440 6.019801 CGAGTGTGAAAGACGAAATATAAGGG 60.020 42.308 0.00 0.00 33.85 3.95
1324 1441 5.585047 AGTGTGAAAGACGAAATATAAGGGC 59.415 40.000 0.00 0.00 33.85 5.19
1325 1442 5.353123 GTGTGAAAGACGAAATATAAGGGCA 59.647 40.000 0.00 0.00 0.00 5.36
1326 1443 6.038271 GTGTGAAAGACGAAATATAAGGGCAT 59.962 38.462 0.00 0.00 0.00 4.40
1327 1444 7.225931 GTGTGAAAGACGAAATATAAGGGCATA 59.774 37.037 0.00 0.00 0.00 3.14
1328 1445 7.936847 TGTGAAAGACGAAATATAAGGGCATAT 59.063 33.333 0.00 0.00 0.00 1.78
1329 1446 8.784043 GTGAAAGACGAAATATAAGGGCATATT 58.216 33.333 0.00 0.00 33.46 1.28
1330 1447 8.999431 TGAAAGACGAAATATAAGGGCATATTC 58.001 33.333 0.00 0.00 31.35 1.75
1331 1448 8.918202 AAAGACGAAATATAAGGGCATATTCA 57.082 30.769 0.00 0.00 31.35 2.57
1332 1449 7.907214 AGACGAAATATAAGGGCATATTCAC 57.093 36.000 0.00 0.00 31.35 3.18
1333 1450 7.680730 AGACGAAATATAAGGGCATATTCACT 58.319 34.615 0.00 0.00 31.35 3.41
1334 1451 7.819900 AGACGAAATATAAGGGCATATTCACTC 59.180 37.037 0.00 0.00 31.35 3.51
1335 1452 6.879458 ACGAAATATAAGGGCATATTCACTCC 59.121 38.462 0.00 0.00 31.35 3.85
1336 1453 6.036083 CGAAATATAAGGGCATATTCACTCCG 59.964 42.308 0.00 0.00 31.35 4.63
1337 1454 6.374417 AATATAAGGGCATATTCACTCCGT 57.626 37.500 0.00 0.00 0.00 4.69
1338 1455 2.332063 AAGGGCATATTCACTCCGTG 57.668 50.000 0.00 0.00 34.45 4.94
1339 1456 0.179045 AGGGCATATTCACTCCGTGC 60.179 55.000 0.00 0.00 32.98 5.34
1340 1457 0.463654 GGGCATATTCACTCCGTGCA 60.464 55.000 0.00 0.00 37.53 4.57
1341 1458 1.597742 GGCATATTCACTCCGTGCAT 58.402 50.000 0.00 0.00 37.53 3.96
1342 1459 1.265095 GGCATATTCACTCCGTGCATG 59.735 52.381 0.00 0.00 37.53 4.06
1343 1460 1.334419 GCATATTCACTCCGTGCATGC 60.334 52.381 11.82 11.82 36.57 4.06
1344 1461 1.265095 CATATTCACTCCGTGCATGCC 59.735 52.381 16.68 5.63 32.98 4.40
1345 1462 0.809636 TATTCACTCCGTGCATGCCG 60.810 55.000 16.68 17.54 32.98 5.69
1346 1463 2.520465 ATTCACTCCGTGCATGCCGA 62.520 55.000 24.22 13.02 32.98 5.54
1347 1464 3.490759 CACTCCGTGCATGCCGAC 61.491 66.667 24.22 13.04 0.00 4.79
1348 1465 4.002506 ACTCCGTGCATGCCGACA 62.003 61.111 24.22 12.63 0.00 4.35
1349 1466 3.490759 CTCCGTGCATGCCGACAC 61.491 66.667 24.22 12.04 0.00 3.67
1373 1490 4.409588 CGTGCGCGGACGTTTGAG 62.410 66.667 39.38 15.41 42.83 3.02
1374 1491 4.072088 GTGCGCGGACGTTTGAGG 62.072 66.667 16.79 0.00 42.83 3.86
1377 1494 3.110178 CGCGGACGTTTGAGGGTC 61.110 66.667 0.00 0.00 33.53 4.46
1378 1495 3.110178 GCGGACGTTTGAGGGTCG 61.110 66.667 0.00 0.00 33.99 4.79
1379 1496 2.431942 CGGACGTTTGAGGGTCGG 60.432 66.667 0.00 0.00 33.99 4.79
1380 1497 2.922950 CGGACGTTTGAGGGTCGGA 61.923 63.158 0.00 0.00 36.07 4.55
1381 1498 1.595357 GGACGTTTGAGGGTCGGAT 59.405 57.895 0.00 0.00 33.99 4.18
1382 1499 0.036671 GGACGTTTGAGGGTCGGATT 60.037 55.000 0.00 0.00 33.99 3.01
1383 1500 1.609841 GGACGTTTGAGGGTCGGATTT 60.610 52.381 0.00 0.00 33.99 2.17
1384 1501 1.463444 GACGTTTGAGGGTCGGATTTG 59.537 52.381 0.00 0.00 0.00 2.32
1385 1502 0.168128 CGTTTGAGGGTCGGATTTGC 59.832 55.000 0.00 0.00 0.00 3.68
1386 1503 0.526211 GTTTGAGGGTCGGATTTGCC 59.474 55.000 0.00 0.00 0.00 4.52
1387 1504 0.610785 TTTGAGGGTCGGATTTGCCC 60.611 55.000 0.00 0.00 42.64 5.36
1395 1512 4.270376 GGATTTGCCCGATGCGGC 62.270 66.667 0.00 0.00 46.86 6.53
1401 1518 4.221422 GCCCGATGCGGCTGTAGA 62.221 66.667 0.00 0.00 46.86 2.59
1402 1519 2.737180 CCCGATGCGGCTGTAGAT 59.263 61.111 0.00 0.00 46.86 1.98
1403 1520 1.665916 CCCGATGCGGCTGTAGATG 60.666 63.158 0.00 0.00 46.86 2.90
1409 1526 1.142748 GCGGCTGTAGATGCTCTGT 59.857 57.895 0.00 0.00 0.00 3.41
1713 1831 1.622752 ACAAATCCTCCCCTCCCCC 60.623 63.158 0.00 0.00 0.00 5.40
2426 2582 4.060038 TCTCCGAGATGGTAGAAAATGC 57.940 45.455 0.00 0.00 39.52 3.56
2921 3077 4.937620 AGTGGTGACAGCATTATGTGTTAG 59.062 41.667 11.06 0.00 44.46 2.34
2982 3138 2.166664 GAGGACTCGTGGCATTTCTACT 59.833 50.000 0.00 0.00 0.00 2.57
3365 3521 3.075283 ACACTTGTTCCATCATGGGGTTA 59.925 43.478 3.05 0.00 38.32 2.85
3382 3538 4.058817 GGGTTACACAAGTGAGAGAGTTG 58.941 47.826 7.28 0.00 40.42 3.16
3569 3726 2.774774 GCGCTCTGCTGAAGTTCG 59.225 61.111 0.00 0.00 41.73 3.95
3919 4149 9.241919 GATAGATGAGATTCTGTGGATAGAGAA 57.758 37.037 0.00 0.00 40.08 2.87
3945 4175 4.730949 TTCCAGTAGACTTATGGAACGG 57.269 45.455 14.13 0.00 45.76 4.44
4152 4383 5.065859 ACACAAAACATGTTCATGTCGAAGA 59.934 36.000 20.91 0.00 41.46 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.456312 CTTTCTCCTTCCGGTCGTCG 60.456 60.000 0.00 0.00 38.88 5.12
1 2 0.108756 CCTTTCTCCTTCCGGTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
2 3 1.542187 CCCTTTCTCCTTCCGGTCGT 61.542 60.000 0.00 0.00 0.00 4.34
3 4 1.218316 CCCTTTCTCCTTCCGGTCG 59.782 63.158 0.00 0.00 0.00 4.79
4 5 1.078356 GCCCTTTCTCCTTCCGGTC 60.078 63.158 0.00 0.00 0.00 4.79
5 6 2.603652 GGCCCTTTCTCCTTCCGGT 61.604 63.158 0.00 0.00 0.00 5.28
6 7 2.272471 GGCCCTTTCTCCTTCCGG 59.728 66.667 0.00 0.00 0.00 5.14
7 8 2.125106 CGGCCCTTTCTCCTTCCG 60.125 66.667 0.00 0.00 0.00 4.30
8 9 2.272471 CCGGCCCTTTCTCCTTCC 59.728 66.667 0.00 0.00 0.00 3.46
9 10 2.438614 GCCGGCCCTTTCTCCTTC 60.439 66.667 18.11 0.00 0.00 3.46
10 11 4.410400 CGCCGGCCCTTTCTCCTT 62.410 66.667 23.46 0.00 0.00 3.36
12 13 4.840005 CTCGCCGGCCCTTTCTCC 62.840 72.222 23.46 0.00 0.00 3.71
13 14 4.840005 CCTCGCCGGCCCTTTCTC 62.840 72.222 23.46 0.00 0.00 2.87
15 16 3.912745 TTTCCTCGCCGGCCCTTTC 62.913 63.158 23.46 0.00 0.00 2.62
16 17 2.781431 AATTTCCTCGCCGGCCCTTT 62.781 55.000 23.46 2.07 0.00 3.11
17 18 3.282374 AATTTCCTCGCCGGCCCTT 62.282 57.895 23.46 0.71 0.00 3.95
18 19 3.728373 AATTTCCTCGCCGGCCCT 61.728 61.111 23.46 0.00 0.00 5.19
19 20 3.518068 CAATTTCCTCGCCGGCCC 61.518 66.667 23.46 0.00 0.00 5.80
20 21 2.750237 ACAATTTCCTCGCCGGCC 60.750 61.111 23.46 2.84 0.00 6.13
21 22 2.038269 TCACAATTTCCTCGCCGGC 61.038 57.895 19.07 19.07 0.00 6.13
22 23 0.673644 AGTCACAATTTCCTCGCCGG 60.674 55.000 0.00 0.00 0.00 6.13
23 24 1.128692 GAAGTCACAATTTCCTCGCCG 59.871 52.381 0.00 0.00 0.00 6.46
24 25 1.468914 GGAAGTCACAATTTCCTCGCC 59.531 52.381 0.00 0.00 38.06 5.54
25 26 2.427506 AGGAAGTCACAATTTCCTCGC 58.572 47.619 0.07 0.00 45.74 5.03
29 30 1.468914 GCGGAGGAAGTCACAATTTCC 59.531 52.381 0.00 0.00 40.65 3.13
30 31 1.468914 GGCGGAGGAAGTCACAATTTC 59.531 52.381 0.00 0.00 0.00 2.17
31 32 1.534729 GGCGGAGGAAGTCACAATTT 58.465 50.000 0.00 0.00 0.00 1.82
32 33 0.322546 GGGCGGAGGAAGTCACAATT 60.323 55.000 0.00 0.00 0.00 2.32
33 34 1.201429 AGGGCGGAGGAAGTCACAAT 61.201 55.000 0.00 0.00 0.00 2.71
34 35 1.415672 AAGGGCGGAGGAAGTCACAA 61.416 55.000 0.00 0.00 0.00 3.33
35 36 1.827399 GAAGGGCGGAGGAAGTCACA 61.827 60.000 0.00 0.00 0.00 3.58
36 37 1.079057 GAAGGGCGGAGGAAGTCAC 60.079 63.158 0.00 0.00 0.00 3.67
37 38 2.291043 GGAAGGGCGGAGGAAGTCA 61.291 63.158 0.00 0.00 0.00 3.41
38 39 1.554583 AAGGAAGGGCGGAGGAAGTC 61.555 60.000 0.00 0.00 0.00 3.01
39 40 1.539124 AAGGAAGGGCGGAGGAAGT 60.539 57.895 0.00 0.00 0.00 3.01
40 41 1.078143 CAAGGAAGGGCGGAGGAAG 60.078 63.158 0.00 0.00 0.00 3.46
41 42 1.423794 AACAAGGAAGGGCGGAGGAA 61.424 55.000 0.00 0.00 0.00 3.36
42 43 1.838073 GAACAAGGAAGGGCGGAGGA 61.838 60.000 0.00 0.00 0.00 3.71
43 44 1.377333 GAACAAGGAAGGGCGGAGG 60.377 63.158 0.00 0.00 0.00 4.30
44 45 0.674895 CAGAACAAGGAAGGGCGGAG 60.675 60.000 0.00 0.00 0.00 4.63
45 46 1.374947 CAGAACAAGGAAGGGCGGA 59.625 57.895 0.00 0.00 0.00 5.54
46 47 0.537371 AACAGAACAAGGAAGGGCGG 60.537 55.000 0.00 0.00 0.00 6.13
47 48 1.318576 AAACAGAACAAGGAAGGGCG 58.681 50.000 0.00 0.00 0.00 6.13
48 49 4.336280 AGATAAACAGAACAAGGAAGGGC 58.664 43.478 0.00 0.00 0.00 5.19
49 50 7.715686 GGTATAGATAAACAGAACAAGGAAGGG 59.284 40.741 0.00 0.00 0.00 3.95
50 51 8.487028 AGGTATAGATAAACAGAACAAGGAAGG 58.513 37.037 0.00 0.00 0.00 3.46
53 54 9.710818 AGTAGGTATAGATAAACAGAACAAGGA 57.289 33.333 0.00 0.00 0.00 3.36
222 236 1.040646 GGGCTTTTATGGGCCTTAGC 58.959 55.000 4.53 4.51 46.80 3.09
233 247 2.265182 GCGGTGCACAGGGCTTTTA 61.265 57.895 20.43 0.00 45.15 1.52
241 255 1.008538 GTTTTCCAGCGGTGCACAG 60.009 57.895 20.43 16.70 0.00 3.66
242 256 2.485795 GGTTTTCCAGCGGTGCACA 61.486 57.895 20.43 0.00 40.31 4.57
243 257 1.734388 AAGGTTTTCCAGCGGTGCAC 61.734 55.000 8.80 8.80 43.73 4.57
245 259 1.173913 ATAAGGTTTTCCAGCGGTGC 58.826 50.000 9.63 0.00 43.73 5.01
288 319 3.680338 GACCGACGGGAAGCTCGAC 62.680 68.421 20.00 0.00 36.97 4.20
319 350 5.659079 ACAGAAATAATAAAAATGGGCCGGA 59.341 36.000 5.05 0.00 0.00 5.14
436 505 5.476091 AGGCGGGAACAAATTTTGAATTA 57.524 34.783 15.81 0.00 0.00 1.40
889 1002 1.482593 TCCTTCAGATCCGCCTCTTTC 59.517 52.381 0.00 0.00 0.00 2.62
892 1005 1.573108 TTTCCTTCAGATCCGCCTCT 58.427 50.000 0.00 0.00 0.00 3.69
916 1029 2.091541 CCACTACCCAATTCGTGCATT 58.908 47.619 0.00 0.00 0.00 3.56
990 1105 2.355837 GCTGTGGTGTTCTCGCGA 60.356 61.111 9.26 9.26 0.00 5.87
1031 1146 1.194547 CATCAAAACGGTCTCCACACG 59.805 52.381 0.00 0.00 0.00 4.49
1140 1257 9.237187 TGCAAATCCATACTACAAACTTATGAA 57.763 29.630 0.00 0.00 0.00 2.57
1141 1258 8.673711 GTGCAAATCCATACTACAAACTTATGA 58.326 33.333 0.00 0.00 0.00 2.15
1142 1259 8.677300 AGTGCAAATCCATACTACAAACTTATG 58.323 33.333 0.00 0.00 0.00 1.90
1143 1260 8.677300 CAGTGCAAATCCATACTACAAACTTAT 58.323 33.333 0.00 0.00 0.00 1.73
1144 1261 7.663905 ACAGTGCAAATCCATACTACAAACTTA 59.336 33.333 0.00 0.00 0.00 2.24
1145 1262 6.490040 ACAGTGCAAATCCATACTACAAACTT 59.510 34.615 0.00 0.00 0.00 2.66
1146 1263 6.003950 ACAGTGCAAATCCATACTACAAACT 58.996 36.000 0.00 0.00 0.00 2.66
1147 1264 6.254281 ACAGTGCAAATCCATACTACAAAC 57.746 37.500 0.00 0.00 0.00 2.93
1148 1265 5.414454 GGACAGTGCAAATCCATACTACAAA 59.586 40.000 7.17 0.00 32.35 2.83
1149 1266 4.941263 GGACAGTGCAAATCCATACTACAA 59.059 41.667 7.17 0.00 32.35 2.41
1150 1267 4.513442 GGACAGTGCAAATCCATACTACA 58.487 43.478 7.17 0.00 32.35 2.74
1151 1268 3.555956 CGGACAGTGCAAATCCATACTAC 59.444 47.826 11.56 0.00 32.35 2.73
1152 1269 3.196901 ACGGACAGTGCAAATCCATACTA 59.803 43.478 11.56 0.00 32.35 1.82
1153 1270 2.027192 ACGGACAGTGCAAATCCATACT 60.027 45.455 11.56 0.00 32.35 2.12
1154 1271 2.351726 GACGGACAGTGCAAATCCATAC 59.648 50.000 11.56 0.73 32.35 2.39
1155 1272 2.627945 GACGGACAGTGCAAATCCATA 58.372 47.619 11.56 0.00 32.35 2.74
1156 1273 1.453155 GACGGACAGTGCAAATCCAT 58.547 50.000 11.56 0.00 32.35 3.41
1157 1274 0.948623 CGACGGACAGTGCAAATCCA 60.949 55.000 11.56 0.00 32.35 3.41
1158 1275 0.669318 TCGACGGACAGTGCAAATCC 60.669 55.000 0.00 0.00 0.00 3.01
1159 1276 1.126846 CTTCGACGGACAGTGCAAATC 59.873 52.381 0.00 0.00 0.00 2.17
1160 1277 1.148310 CTTCGACGGACAGTGCAAAT 58.852 50.000 0.00 0.00 0.00 2.32
1161 1278 0.103390 TCTTCGACGGACAGTGCAAA 59.897 50.000 0.00 0.00 0.00 3.68
1162 1279 0.103390 TTCTTCGACGGACAGTGCAA 59.897 50.000 0.00 0.00 0.00 4.08
1163 1280 0.103390 TTTCTTCGACGGACAGTGCA 59.897 50.000 0.00 0.00 0.00 4.57
1164 1281 0.507358 GTTTCTTCGACGGACAGTGC 59.493 55.000 0.00 0.00 0.00 4.40
1165 1282 2.052157 GAGTTTCTTCGACGGACAGTG 58.948 52.381 0.00 0.00 0.00 3.66
1166 1283 1.000496 GGAGTTTCTTCGACGGACAGT 60.000 52.381 0.00 0.00 0.00 3.55
1167 1284 1.699343 GGAGTTTCTTCGACGGACAG 58.301 55.000 0.00 0.00 0.00 3.51
1168 1285 0.039798 CGGAGTTTCTTCGACGGACA 60.040 55.000 0.00 0.00 33.77 4.02
1169 1286 0.239347 TCGGAGTTTCTTCGACGGAC 59.761 55.000 0.00 0.00 36.49 4.79
1170 1287 1.135489 CATCGGAGTTTCTTCGACGGA 60.135 52.381 2.16 0.00 44.67 4.69
1171 1288 1.135489 TCATCGGAGTTTCTTCGACGG 60.135 52.381 2.16 0.00 44.67 4.79
1172 1289 2.257974 TCATCGGAGTTTCTTCGACG 57.742 50.000 2.16 0.00 44.67 5.12
1173 1290 4.174009 TGATTCATCGGAGTTTCTTCGAC 58.826 43.478 2.16 0.00 44.67 4.20
1174 1291 4.450082 TGATTCATCGGAGTTTCTTCGA 57.550 40.909 2.62 2.62 45.98 3.71
1175 1292 4.568359 ACATGATTCATCGGAGTTTCTTCG 59.432 41.667 0.00 0.00 33.10 3.79
1176 1293 6.428385 AACATGATTCATCGGAGTTTCTTC 57.572 37.500 0.00 0.00 0.00 2.87
1177 1294 6.656693 AGAAACATGATTCATCGGAGTTTCTT 59.343 34.615 23.71 14.86 43.71 2.52
1178 1295 6.176183 AGAAACATGATTCATCGGAGTTTCT 58.824 36.000 23.71 23.71 42.73 2.52
1179 1296 6.428385 AGAAACATGATTCATCGGAGTTTC 57.572 37.500 21.34 21.34 40.57 2.78
1180 1297 6.824305 AAGAAACATGATTCATCGGAGTTT 57.176 33.333 16.93 10.80 33.48 2.66
1181 1298 6.824305 AAAGAAACATGATTCATCGGAGTT 57.176 33.333 16.93 0.00 0.00 3.01
1182 1299 6.207417 ACAAAAGAAACATGATTCATCGGAGT 59.793 34.615 16.93 5.82 0.00 3.85
1183 1300 6.615088 ACAAAAGAAACATGATTCATCGGAG 58.385 36.000 16.93 5.29 0.00 4.63
1184 1301 6.430925 AGACAAAAGAAACATGATTCATCGGA 59.569 34.615 16.93 0.00 0.00 4.55
1185 1302 6.525628 CAGACAAAAGAAACATGATTCATCGG 59.474 38.462 16.93 7.07 0.00 4.18
1186 1303 6.525628 CCAGACAAAAGAAACATGATTCATCG 59.474 38.462 16.93 5.87 0.00 3.84
1187 1304 7.373493 ACCAGACAAAAGAAACATGATTCATC 58.627 34.615 16.93 7.03 0.00 2.92
1188 1305 7.294017 ACCAGACAAAAGAAACATGATTCAT 57.706 32.000 16.93 3.13 0.00 2.57
1189 1306 6.713762 ACCAGACAAAAGAAACATGATTCA 57.286 33.333 16.93 0.00 0.00 2.57
1190 1307 9.696917 ATTAACCAGACAAAAGAAACATGATTC 57.303 29.630 7.59 7.59 0.00 2.52
1191 1308 9.696917 GATTAACCAGACAAAAGAAACATGATT 57.303 29.630 0.00 0.00 0.00 2.57
1192 1309 8.306761 GGATTAACCAGACAAAAGAAACATGAT 58.693 33.333 0.00 0.00 38.79 2.45
1193 1310 7.521423 CGGATTAACCAGACAAAAGAAACATGA 60.521 37.037 0.00 0.00 38.90 3.07
1194 1311 6.582295 CGGATTAACCAGACAAAAGAAACATG 59.418 38.462 0.00 0.00 38.90 3.21
1195 1312 6.488683 TCGGATTAACCAGACAAAAGAAACAT 59.511 34.615 0.00 0.00 38.90 2.71
1196 1313 5.823570 TCGGATTAACCAGACAAAAGAAACA 59.176 36.000 0.00 0.00 38.90 2.83
1197 1314 6.308371 TCGGATTAACCAGACAAAAGAAAC 57.692 37.500 0.00 0.00 38.90 2.78
1198 1315 6.712998 TCATCGGATTAACCAGACAAAAGAAA 59.287 34.615 0.00 0.00 38.90 2.52
1199 1316 6.234920 TCATCGGATTAACCAGACAAAAGAA 58.765 36.000 0.00 0.00 38.90 2.52
1200 1317 5.800296 TCATCGGATTAACCAGACAAAAGA 58.200 37.500 0.00 0.00 38.90 2.52
1201 1318 6.149474 AGTTCATCGGATTAACCAGACAAAAG 59.851 38.462 10.58 0.00 38.90 2.27
1202 1319 6.001460 AGTTCATCGGATTAACCAGACAAAA 58.999 36.000 10.58 0.00 38.90 2.44
1203 1320 5.411361 CAGTTCATCGGATTAACCAGACAAA 59.589 40.000 10.58 0.00 38.90 2.83
1204 1321 4.935205 CAGTTCATCGGATTAACCAGACAA 59.065 41.667 10.58 0.00 38.90 3.18
1205 1322 4.503910 CAGTTCATCGGATTAACCAGACA 58.496 43.478 10.58 0.00 38.90 3.41
1206 1323 3.309954 GCAGTTCATCGGATTAACCAGAC 59.690 47.826 10.58 0.00 38.90 3.51
1207 1324 3.531538 GCAGTTCATCGGATTAACCAGA 58.468 45.455 10.58 0.00 38.90 3.86
1208 1325 2.285220 CGCAGTTCATCGGATTAACCAG 59.715 50.000 10.58 6.21 38.90 4.00
1209 1326 2.276201 CGCAGTTCATCGGATTAACCA 58.724 47.619 10.58 0.00 38.90 3.67
1210 1327 1.003866 GCGCAGTTCATCGGATTAACC 60.004 52.381 0.30 0.00 0.00 2.85
1211 1328 1.933853 AGCGCAGTTCATCGGATTAAC 59.066 47.619 11.47 6.90 0.00 2.01
1212 1329 2.309528 AGCGCAGTTCATCGGATTAA 57.690 45.000 11.47 0.00 0.00 1.40
1213 1330 2.309528 AAGCGCAGTTCATCGGATTA 57.690 45.000 11.47 0.00 0.00 1.75
1214 1331 1.131126 CAAAGCGCAGTTCATCGGATT 59.869 47.619 11.47 0.00 0.00 3.01
1215 1332 0.729116 CAAAGCGCAGTTCATCGGAT 59.271 50.000 11.47 0.00 0.00 4.18
1216 1333 0.320334 TCAAAGCGCAGTTCATCGGA 60.320 50.000 11.47 0.00 0.00 4.55
1217 1334 0.729116 ATCAAAGCGCAGTTCATCGG 59.271 50.000 11.47 0.00 0.00 4.18
1218 1335 1.662629 AGATCAAAGCGCAGTTCATCG 59.337 47.619 11.47 0.00 0.00 3.84
1219 1336 3.120060 ACAAGATCAAAGCGCAGTTCATC 60.120 43.478 11.47 4.75 0.00 2.92
1220 1337 2.816087 ACAAGATCAAAGCGCAGTTCAT 59.184 40.909 11.47 0.00 0.00 2.57
1221 1338 2.031769 CACAAGATCAAAGCGCAGTTCA 60.032 45.455 11.47 0.00 0.00 3.18
1222 1339 2.031682 ACACAAGATCAAAGCGCAGTTC 60.032 45.455 11.47 3.81 0.00 3.01
1223 1340 1.949525 ACACAAGATCAAAGCGCAGTT 59.050 42.857 11.47 0.00 0.00 3.16
1224 1341 1.597742 ACACAAGATCAAAGCGCAGT 58.402 45.000 11.47 0.00 0.00 4.40
1225 1342 2.693797 AACACAAGATCAAAGCGCAG 57.306 45.000 11.47 0.00 0.00 5.18
1226 1343 3.435105 AAAACACAAGATCAAAGCGCA 57.565 38.095 11.47 0.00 0.00 6.09
1227 1344 7.112148 GCTATATAAAACACAAGATCAAAGCGC 59.888 37.037 0.00 0.00 0.00 5.92
1228 1345 7.318909 CGCTATATAAAACACAAGATCAAAGCG 59.681 37.037 0.00 0.00 39.41 4.68
1229 1346 8.122952 ACGCTATATAAAACACAAGATCAAAGC 58.877 33.333 0.00 0.00 0.00 3.51
1230 1347 9.425893 CACGCTATATAAAACACAAGATCAAAG 57.574 33.333 0.00 0.00 0.00 2.77
1231 1348 8.394877 CCACGCTATATAAAACACAAGATCAAA 58.605 33.333 0.00 0.00 0.00 2.69
1232 1349 7.466725 GCCACGCTATATAAAACACAAGATCAA 60.467 37.037 0.00 0.00 0.00 2.57
1233 1350 6.018262 GCCACGCTATATAAAACACAAGATCA 60.018 38.462 0.00 0.00 0.00 2.92
1234 1351 6.018262 TGCCACGCTATATAAAACACAAGATC 60.018 38.462 0.00 0.00 0.00 2.75
1235 1352 5.820423 TGCCACGCTATATAAAACACAAGAT 59.180 36.000 0.00 0.00 0.00 2.40
1236 1353 5.179533 TGCCACGCTATATAAAACACAAGA 58.820 37.500 0.00 0.00 0.00 3.02
1237 1354 5.478233 TGCCACGCTATATAAAACACAAG 57.522 39.130 0.00 0.00 0.00 3.16
1238 1355 5.586643 TCATGCCACGCTATATAAAACACAA 59.413 36.000 0.00 0.00 0.00 3.33
1239 1356 5.119694 TCATGCCACGCTATATAAAACACA 58.880 37.500 0.00 0.00 0.00 3.72
1240 1357 5.666969 TCATGCCACGCTATATAAAACAC 57.333 39.130 0.00 0.00 0.00 3.32
1241 1358 6.875948 ATTCATGCCACGCTATATAAAACA 57.124 33.333 0.00 0.00 0.00 2.83
1242 1359 7.552848 CAATTCATGCCACGCTATATAAAAC 57.447 36.000 0.00 0.00 0.00 2.43
1259 1376 7.419204 CAAAACTTCAAAACCATGCAATTCAT 58.581 30.769 0.00 0.00 35.31 2.57
1260 1377 6.183360 CCAAAACTTCAAAACCATGCAATTCA 60.183 34.615 0.00 0.00 0.00 2.57
1261 1378 6.038050 TCCAAAACTTCAAAACCATGCAATTC 59.962 34.615 0.00 0.00 0.00 2.17
1262 1379 5.884792 TCCAAAACTTCAAAACCATGCAATT 59.115 32.000 0.00 0.00 0.00 2.32
1263 1380 5.435291 TCCAAAACTTCAAAACCATGCAAT 58.565 33.333 0.00 0.00 0.00 3.56
1264 1381 4.836825 TCCAAAACTTCAAAACCATGCAA 58.163 34.783 0.00 0.00 0.00 4.08
1265 1382 4.478206 TCCAAAACTTCAAAACCATGCA 57.522 36.364 0.00 0.00 0.00 3.96
1266 1383 6.873076 TCATATCCAAAACTTCAAAACCATGC 59.127 34.615 0.00 0.00 0.00 4.06
1267 1384 8.830201 TTCATATCCAAAACTTCAAAACCATG 57.170 30.769 0.00 0.00 0.00 3.66
1268 1385 8.096414 CCTTCATATCCAAAACTTCAAAACCAT 58.904 33.333 0.00 0.00 0.00 3.55
1269 1386 7.288852 TCCTTCATATCCAAAACTTCAAAACCA 59.711 33.333 0.00 0.00 0.00 3.67
1270 1387 7.598869 GTCCTTCATATCCAAAACTTCAAAACC 59.401 37.037 0.00 0.00 0.00 3.27
1271 1388 7.326063 CGTCCTTCATATCCAAAACTTCAAAAC 59.674 37.037 0.00 0.00 0.00 2.43
1272 1389 7.367285 CGTCCTTCATATCCAAAACTTCAAAA 58.633 34.615 0.00 0.00 0.00 2.44
1273 1390 6.569610 GCGTCCTTCATATCCAAAACTTCAAA 60.570 38.462 0.00 0.00 0.00 2.69
1274 1391 5.106317 GCGTCCTTCATATCCAAAACTTCAA 60.106 40.000 0.00 0.00 0.00 2.69
1275 1392 4.394920 GCGTCCTTCATATCCAAAACTTCA 59.605 41.667 0.00 0.00 0.00 3.02
1276 1393 4.494199 CGCGTCCTTCATATCCAAAACTTC 60.494 45.833 0.00 0.00 0.00 3.01
1277 1394 3.374058 CGCGTCCTTCATATCCAAAACTT 59.626 43.478 0.00 0.00 0.00 2.66
1278 1395 2.936498 CGCGTCCTTCATATCCAAAACT 59.064 45.455 0.00 0.00 0.00 2.66
1279 1396 2.933906 TCGCGTCCTTCATATCCAAAAC 59.066 45.455 5.77 0.00 0.00 2.43
1280 1397 3.194861 CTCGCGTCCTTCATATCCAAAA 58.805 45.455 5.77 0.00 0.00 2.44
1281 1398 2.167693 ACTCGCGTCCTTCATATCCAAA 59.832 45.455 5.77 0.00 0.00 3.28
1282 1399 1.754803 ACTCGCGTCCTTCATATCCAA 59.245 47.619 5.77 0.00 0.00 3.53
1283 1400 1.067060 CACTCGCGTCCTTCATATCCA 59.933 52.381 5.77 0.00 0.00 3.41
1284 1401 1.067212 ACACTCGCGTCCTTCATATCC 59.933 52.381 5.77 0.00 0.00 2.59
1285 1402 2.120232 CACACTCGCGTCCTTCATATC 58.880 52.381 5.77 0.00 0.00 1.63
1286 1403 1.749063 TCACACTCGCGTCCTTCATAT 59.251 47.619 5.77 0.00 0.00 1.78
1287 1404 1.170442 TCACACTCGCGTCCTTCATA 58.830 50.000 5.77 0.00 0.00 2.15
1288 1405 0.317160 TTCACACTCGCGTCCTTCAT 59.683 50.000 5.77 0.00 0.00 2.57
1289 1406 0.103390 TTTCACACTCGCGTCCTTCA 59.897 50.000 5.77 0.00 0.00 3.02
1290 1407 0.784778 CTTTCACACTCGCGTCCTTC 59.215 55.000 5.77 0.00 0.00 3.46
1291 1408 0.387929 TCTTTCACACTCGCGTCCTT 59.612 50.000 5.77 0.00 0.00 3.36
1292 1409 0.318784 GTCTTTCACACTCGCGTCCT 60.319 55.000 5.77 0.00 0.00 3.85
1293 1410 1.606350 CGTCTTTCACACTCGCGTCC 61.606 60.000 5.77 0.00 0.00 4.79
1294 1411 0.659417 TCGTCTTTCACACTCGCGTC 60.659 55.000 5.77 0.00 0.00 5.19
1295 1412 0.248743 TTCGTCTTTCACACTCGCGT 60.249 50.000 5.77 0.00 0.00 6.01
1296 1413 0.850217 TTTCGTCTTTCACACTCGCG 59.150 50.000 0.00 0.00 0.00 5.87
1297 1414 4.842139 ATATTTCGTCTTTCACACTCGC 57.158 40.909 0.00 0.00 0.00 5.03
1298 1415 6.019801 CCCTTATATTTCGTCTTTCACACTCG 60.020 42.308 0.00 0.00 0.00 4.18
1299 1416 6.238130 GCCCTTATATTTCGTCTTTCACACTC 60.238 42.308 0.00 0.00 0.00 3.51
1300 1417 5.585047 GCCCTTATATTTCGTCTTTCACACT 59.415 40.000 0.00 0.00 0.00 3.55
1301 1418 5.353123 TGCCCTTATATTTCGTCTTTCACAC 59.647 40.000 0.00 0.00 0.00 3.82
1302 1419 5.492895 TGCCCTTATATTTCGTCTTTCACA 58.507 37.500 0.00 0.00 0.00 3.58
1303 1420 6.619801 ATGCCCTTATATTTCGTCTTTCAC 57.380 37.500 0.00 0.00 0.00 3.18
1304 1421 8.918202 AATATGCCCTTATATTTCGTCTTTCA 57.082 30.769 0.00 0.00 30.98 2.69
1305 1422 8.999431 TGAATATGCCCTTATATTTCGTCTTTC 58.001 33.333 0.00 0.00 34.31 2.62
1306 1423 8.784043 GTGAATATGCCCTTATATTTCGTCTTT 58.216 33.333 0.00 0.00 34.31 2.52
1307 1424 8.157476 AGTGAATATGCCCTTATATTTCGTCTT 58.843 33.333 0.00 0.00 34.31 3.01
1308 1425 7.680730 AGTGAATATGCCCTTATATTTCGTCT 58.319 34.615 0.00 0.00 34.31 4.18
1309 1426 7.064728 GGAGTGAATATGCCCTTATATTTCGTC 59.935 40.741 0.00 0.00 34.31 4.20
1310 1427 6.879458 GGAGTGAATATGCCCTTATATTTCGT 59.121 38.462 0.00 0.00 34.31 3.85
1311 1428 6.036083 CGGAGTGAATATGCCCTTATATTTCG 59.964 42.308 0.00 0.00 34.31 3.46
1312 1429 6.879458 ACGGAGTGAATATGCCCTTATATTTC 59.121 38.462 0.00 0.00 42.51 2.17
1313 1430 6.779860 ACGGAGTGAATATGCCCTTATATTT 58.220 36.000 0.00 0.00 42.51 1.40
1314 1431 6.374417 ACGGAGTGAATATGCCCTTATATT 57.626 37.500 0.00 0.00 42.51 1.28
1332 1449 3.490759 GTGTCGGCATGCACGGAG 61.491 66.667 21.36 5.06 0.00 4.63
1356 1473 4.409588 CTCAAACGTCCGCGCACG 62.410 66.667 22.86 22.86 45.65 5.34
1357 1474 4.072088 CCTCAAACGTCCGCGCAC 62.072 66.667 8.75 0.00 42.83 5.34
1360 1477 3.110178 GACCCTCAAACGTCCGCG 61.110 66.667 0.00 0.00 44.93 6.46
1361 1478 3.110178 CGACCCTCAAACGTCCGC 61.110 66.667 0.00 0.00 0.00 5.54
1362 1479 2.221906 ATCCGACCCTCAAACGTCCG 62.222 60.000 0.00 0.00 0.00 4.79
1363 1480 0.036671 AATCCGACCCTCAAACGTCC 60.037 55.000 0.00 0.00 0.00 4.79
1364 1481 1.463444 CAAATCCGACCCTCAAACGTC 59.537 52.381 0.00 0.00 0.00 4.34
1365 1482 1.519408 CAAATCCGACCCTCAAACGT 58.481 50.000 0.00 0.00 0.00 3.99
1366 1483 0.168128 GCAAATCCGACCCTCAAACG 59.832 55.000 0.00 0.00 0.00 3.60
1367 1484 0.526211 GGCAAATCCGACCCTCAAAC 59.474 55.000 0.00 0.00 0.00 2.93
1368 1485 0.610785 GGGCAAATCCGACCCTCAAA 60.611 55.000 0.00 0.00 40.75 2.69
1369 1486 1.001393 GGGCAAATCCGACCCTCAA 60.001 57.895 0.00 0.00 40.75 3.02
1370 1487 2.674754 GGGCAAATCCGACCCTCA 59.325 61.111 0.00 0.00 40.75 3.86
1387 1504 1.280886 GAGCATCTACAGCCGCATCG 61.281 60.000 0.00 0.00 0.00 3.84
1388 1505 2.526545 GAGCATCTACAGCCGCATC 58.473 57.895 0.00 0.00 0.00 3.91
1389 1506 4.766970 GAGCATCTACAGCCGCAT 57.233 55.556 0.00 0.00 0.00 4.73
1400 1517 1.900585 TTCAACGCGCACAGAGCATC 61.901 55.000 5.73 0.00 46.13 3.91
1401 1518 1.506309 TTTCAACGCGCACAGAGCAT 61.506 50.000 5.73 0.00 46.13 3.79
1402 1519 2.104770 CTTTCAACGCGCACAGAGCA 62.105 55.000 5.73 0.00 46.13 4.26
1403 1520 1.439365 CTTTCAACGCGCACAGAGC 60.439 57.895 5.73 0.00 40.87 4.09
1409 1526 1.003331 CTACAAACCTTTCAACGCGCA 60.003 47.619 5.73 0.00 0.00 6.09
1462 1579 1.203313 AGGTCTCTACAAAGGGAGGCA 60.203 52.381 0.00 0.00 36.07 4.75
1516 1634 0.254178 TTGGAGGGATGAGAAGCAGC 59.746 55.000 0.00 0.00 0.00 5.25
1713 1831 2.361357 AGGAGGGAGACGGTGTCG 60.361 66.667 0.00 0.00 37.67 4.35
2426 2582 3.118454 CCACTGTAGGCGCAACGG 61.118 66.667 10.83 14.59 0.00 4.44
2547 2703 6.716934 TCAATCAGAGAACTATAGGTGACC 57.283 41.667 4.43 0.00 0.00 4.02
2921 3077 2.763902 CCCTCCCAACTTCACCCC 59.236 66.667 0.00 0.00 0.00 4.95
2982 3138 1.074405 AGATGGAAAGTGCTTGGCTCA 59.926 47.619 0.00 0.00 0.00 4.26
3243 3399 3.315142 TAGCTCCCGCTTGTGCAGG 62.315 63.158 0.00 0.00 46.47 4.85
3365 3521 2.939103 GCAACAACTCTCTCACTTGTGT 59.061 45.455 0.46 0.00 0.00 3.72
3382 3538 5.508489 GGAGTTTAAGGGTTTTGGTAGCAAC 60.508 44.000 6.90 0.00 0.00 4.17
3569 3726 8.226448 CAGAAGACACATGACAAGAATAGAAAC 58.774 37.037 0.00 0.00 0.00 2.78
3787 3944 5.104900 ACCAGGAGTCGATAGCTTGTTTTAT 60.105 40.000 0.00 0.00 0.00 1.40
3788 3945 4.222145 ACCAGGAGTCGATAGCTTGTTTTA 59.778 41.667 0.00 0.00 0.00 1.52
3858 4015 8.644216 TCATACCATAACATAGGAACAATACGT 58.356 33.333 0.00 0.00 0.00 3.57
3896 4126 6.267471 GGTTCTCTATCCACAGAATCTCATCT 59.733 42.308 0.00 0.00 31.35 2.90
3907 4137 4.536090 ACTGGAATTGGTTCTCTATCCACA 59.464 41.667 0.00 0.00 33.61 4.17
3919 4149 6.636454 TTCCATAAGTCTACTGGAATTGGT 57.364 37.500 10.57 0.00 42.60 3.67
3945 4175 0.602638 TGGATGCACGTGAACAGGAC 60.603 55.000 22.23 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.