Multiple sequence alignment - TraesCS3D01G245600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G245600 chr3D 100.000 2645 0 0 1 2645 341884767 341887411 0.000000e+00 4885.0
1 TraesCS3D01G245600 chr3B 92.571 1548 75 24 516 2031 440676677 440678216 0.000000e+00 2185.0
2 TraesCS3D01G245600 chr3B 96.945 622 15 4 2023 2642 440678279 440678898 0.000000e+00 1040.0
3 TraesCS3D01G245600 chr3B 88.409 509 43 9 2 506 440676082 440676578 1.350000e-167 599.0
4 TraesCS3D01G245600 chr3A 95.243 1072 46 5 963 2031 461153935 461152866 0.000000e+00 1692.0
5 TraesCS3D01G245600 chr3A 96.242 612 19 3 2035 2645 461152789 461152181 0.000000e+00 1000.0
6 TraesCS3D01G245600 chr3A 83.437 966 71 29 2 928 461160120 461159205 0.000000e+00 815.0
7 TraesCS3D01G245600 chr5D 90.226 133 13 0 1869 2001 446174953 446174821 9.730000e-40 174.0
8 TraesCS3D01G245600 chr5A 90.226 133 13 0 1869 2001 607275568 607275436 9.730000e-40 174.0
9 TraesCS3D01G245600 chr5A 97.059 34 0 1 2612 2645 537122639 537122607 3.680000e-04 56.5
10 TraesCS3D01G245600 chrUn 89.474 133 14 0 1869 2001 346595325 346595457 4.530000e-38 169.0
11 TraesCS3D01G245600 chrUn 89.474 133 14 0 1869 2001 389446205 389446073 4.530000e-38 169.0
12 TraesCS3D01G245600 chrUn 89.474 133 14 0 1869 2001 444245263 444245395 4.530000e-38 169.0
13 TraesCS3D01G245600 chr6D 89.474 133 14 0 1869 2001 135463274 135463406 4.530000e-38 169.0
14 TraesCS3D01G245600 chr1D 89.474 133 14 0 1869 2001 254396941 254397073 4.530000e-38 169.0
15 TraesCS3D01G245600 chr4B 100.000 29 0 0 2615 2643 413735102 413735074 1.000000e-03 54.7
16 TraesCS3D01G245600 chr2B 100.000 29 0 0 2617 2645 30624720 30624692 1.000000e-03 54.7
17 TraesCS3D01G245600 chr2B 96.970 33 0 1 2613 2645 63298417 63298386 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G245600 chr3D 341884767 341887411 2644 False 4885.000000 4885 100.000000 1 2645 1 chr3D.!!$F1 2644
1 TraesCS3D01G245600 chr3B 440676082 440678898 2816 False 1274.666667 2185 92.641667 2 2642 3 chr3B.!!$F1 2640
2 TraesCS3D01G245600 chr3A 461152181 461153935 1754 True 1346.000000 1692 95.742500 963 2645 2 chr3A.!!$R2 1682
3 TraesCS3D01G245600 chr3A 461159205 461160120 915 True 815.000000 815 83.437000 2 928 1 chr3A.!!$R1 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1144 0.106918 AACAAAGAGGACACCGGCAA 60.107 50.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 2565 2.774774 GCGCTCTGCTGAAGTTCG 59.225 61.111 0.0 0.0 41.73 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.987953 AGATCGATGGTGATTGATGTAGTTG 59.012 40.000 0.54 0.00 33.39 3.16
33 34 5.220912 CGATGGTGATTGATGTAGTTGCATT 60.221 40.000 0.00 0.00 0.00 3.56
34 35 6.018016 CGATGGTGATTGATGTAGTTGCATTA 60.018 38.462 0.00 0.00 0.00 1.90
40 41 6.602803 TGATTGATGTAGTTGCATTACCACAT 59.397 34.615 2.74 2.74 33.92 3.21
41 42 6.832520 TTGATGTAGTTGCATTACCACATT 57.167 33.333 4.44 0.00 31.88 2.71
42 43 6.832520 TGATGTAGTTGCATTACCACATTT 57.167 33.333 4.44 0.00 31.88 2.32
117 118 2.096819 ACAAACACGATGAACACACACC 59.903 45.455 0.00 0.00 0.00 4.16
118 119 2.325583 AACACGATGAACACACACCT 57.674 45.000 0.00 0.00 0.00 4.00
135 136 6.648310 CACACACCTATCCTCTGCATAATTAG 59.352 42.308 0.00 0.00 0.00 1.73
140 141 6.962311 ACCTATCCTCTGCATAATTAGGATGA 59.038 38.462 17.94 4.51 46.08 2.92
180 183 4.905866 CACACACAAAAAGATCATGTCGAC 59.094 41.667 9.11 9.11 0.00 4.20
199 202 3.496130 CGACAGAGCAAAGCCATATAAGG 59.504 47.826 0.00 0.00 0.00 2.69
217 220 2.831565 AGGCCAAAATTATGCAAGGGA 58.168 42.857 5.01 0.00 0.00 4.20
261 264 2.262915 CGAAGAGCCTCGTGCCTT 59.737 61.111 0.00 0.95 42.71 4.35
313 319 0.107945 GCCCACTCAGCAACTCTAGG 60.108 60.000 0.00 0.00 0.00 3.02
320 326 0.827368 CAGCAACTCTAGGAGGTCCC 59.173 60.000 0.00 0.00 36.42 4.46
338 344 2.158475 TCCCCAAAAGCACATGAACTCT 60.158 45.455 0.00 0.00 0.00 3.24
345 351 8.562892 CCCAAAAGCACATGAACTCTATAATAG 58.437 37.037 0.00 0.00 0.00 1.73
353 359 6.936900 ACATGAACTCTATAATAGCGCCAATT 59.063 34.615 2.29 7.36 0.00 2.32
422 432 2.579201 CTCGAGTCCGGGCATGTT 59.421 61.111 9.71 0.00 36.24 2.71
423 433 1.079127 CTCGAGTCCGGGCATGTTT 60.079 57.895 9.71 0.00 36.24 2.83
424 434 0.673644 CTCGAGTCCGGGCATGTTTT 60.674 55.000 9.71 0.00 36.24 2.43
425 435 0.250553 TCGAGTCCGGGCATGTTTTT 60.251 50.000 9.71 0.00 36.24 1.94
499 509 7.175641 GGTCCCATGATATGACAGAATTTTAGG 59.824 40.741 0.00 0.00 0.00 2.69
506 516 8.928448 TGATATGACAGAATTTTAGGAGCTACT 58.072 33.333 2.64 2.64 0.00 2.57
587 686 1.822371 AGTGCACTCCAAACCGTTTTT 59.178 42.857 15.25 0.00 0.00 1.94
614 714 4.013050 GGCTGCCTCTTTTTAGAATCTGT 58.987 43.478 12.43 0.00 0.00 3.41
677 794 2.287308 GCACTTGCGTAATCACCACAAA 60.287 45.455 0.00 0.00 0.00 2.83
678 795 3.793801 GCACTTGCGTAATCACCACAAAA 60.794 43.478 0.00 0.00 0.00 2.44
731 849 4.838904 ACTATGGTTCCTTCTGTTACCC 57.161 45.455 0.00 0.00 0.00 3.69
760 900 3.059188 GCTTTTACAACAGCTAGAACGCA 60.059 43.478 0.00 0.00 32.87 5.24
762 902 4.461992 TTTACAACAGCTAGAACGCAAC 57.538 40.909 0.00 0.00 0.00 4.17
763 903 1.948104 ACAACAGCTAGAACGCAACA 58.052 45.000 0.00 0.00 0.00 3.33
764 904 1.867233 ACAACAGCTAGAACGCAACAG 59.133 47.619 0.00 0.00 0.00 3.16
765 905 2.135139 CAACAGCTAGAACGCAACAGA 58.865 47.619 0.00 0.00 0.00 3.41
766 906 2.071688 ACAGCTAGAACGCAACAGAG 57.928 50.000 0.00 0.00 0.00 3.35
767 907 1.613925 ACAGCTAGAACGCAACAGAGA 59.386 47.619 0.00 0.00 0.00 3.10
768 908 2.035961 ACAGCTAGAACGCAACAGAGAA 59.964 45.455 0.00 0.00 0.00 2.87
769 909 3.059884 CAGCTAGAACGCAACAGAGAAA 58.940 45.455 0.00 0.00 0.00 2.52
770 910 3.060602 AGCTAGAACGCAACAGAGAAAC 58.939 45.455 0.00 0.00 0.00 2.78
771 911 3.060602 GCTAGAACGCAACAGAGAAACT 58.939 45.455 0.00 0.00 0.00 2.66
780 920 3.011085 CAGAGAAACTGCAGCACCA 57.989 52.632 15.27 0.00 39.86 4.17
781 921 0.590195 CAGAGAAACTGCAGCACCAC 59.410 55.000 15.27 3.08 39.86 4.16
782 922 0.536006 AGAGAAACTGCAGCACCACC 60.536 55.000 15.27 0.00 0.00 4.61
783 923 0.819259 GAGAAACTGCAGCACCACCA 60.819 55.000 15.27 0.00 0.00 4.17
784 924 0.395586 AGAAACTGCAGCACCACCAA 60.396 50.000 15.27 0.00 0.00 3.67
785 925 0.249031 GAAACTGCAGCACCACCAAC 60.249 55.000 15.27 0.00 0.00 3.77
826 966 0.609131 AAACTGCAACCCAGGATCCG 60.609 55.000 5.98 1.07 46.14 4.18
833 973 1.201429 AACCCAGGATCCGAGCTTGT 61.201 55.000 5.98 0.00 0.00 3.16
850 991 4.036144 AGCTTGTCTTCAGTTTTGCTTCTC 59.964 41.667 0.00 0.00 0.00 2.87
899 1040 2.288666 GCAAATAGAAGCCGATCACCA 58.711 47.619 0.00 0.00 0.00 4.17
922 1063 3.131755 GCTTCATTCCCTTCAAATCCCTG 59.868 47.826 0.00 0.00 0.00 4.45
947 1115 4.899502 ACACATCCTCAAAGACCTGTTAG 58.100 43.478 0.00 0.00 0.00 2.34
967 1135 4.170468 AGAAGGAAGCAAACAAAGAGGA 57.830 40.909 0.00 0.00 0.00 3.71
972 1140 1.308998 AGCAAACAAAGAGGACACCG 58.691 50.000 0.00 0.00 0.00 4.94
976 1144 0.106918 AACAAAGAGGACACCGGCAA 60.107 50.000 0.00 0.00 0.00 4.52
1056 1224 0.883833 CCAACAGAACTGATGGCACC 59.116 55.000 15.87 0.00 44.59 5.01
1057 1225 1.608055 CAACAGAACTGATGGCACCA 58.392 50.000 8.87 0.00 30.86 4.17
1072 1240 0.827089 CACCAACAACATGAGCCCCA 60.827 55.000 0.00 0.00 0.00 4.96
1073 1241 0.827507 ACCAACAACATGAGCCCCAC 60.828 55.000 0.00 0.00 0.00 4.61
1087 1255 1.135315 CCCACGCAGAAAGCAATCG 59.865 57.895 0.00 0.00 46.13 3.34
1206 1374 1.000843 CACTGTGGTGACTTGGATCGA 59.999 52.381 0.00 0.00 45.61 3.59
1224 1392 0.250081 GAATGATGACGGGAGGGCTC 60.250 60.000 0.00 0.00 0.00 4.70
1255 1423 2.291465 TGTGCACTCTCATGCTTTGTTC 59.709 45.455 19.41 0.00 46.28 3.18
1259 1427 4.453478 TGCACTCTCATGCTTTGTTCTTAG 59.547 41.667 0.00 0.00 46.28 2.18
1335 1503 2.755103 GTTCAAGGGATTGTGGGTCATC 59.245 50.000 0.00 0.00 0.00 2.92
1368 1536 0.671472 CTCTTGATCCACACGCTGCA 60.671 55.000 0.00 0.00 0.00 4.41
1384 1552 6.201044 ACACGCTGCAGTTGAATATAAGATAC 59.799 38.462 20.42 0.00 0.00 2.24
1385 1553 6.200854 CACGCTGCAGTTGAATATAAGATACA 59.799 38.462 16.64 0.00 0.00 2.29
1420 1588 1.202794 TCCATGCAACTGTCTCAGCAA 60.203 47.619 0.00 0.00 40.76 3.91
1421 1589 1.068748 CCATGCAACTGTCTCAGCAAC 60.069 52.381 0.00 0.00 40.76 4.17
1425 1593 1.127582 GCAACTGTCTCAGCAACGATC 59.872 52.381 0.00 0.00 34.37 3.69
1443 1611 0.597568 TCTTTGTTGCAATCGCCCTG 59.402 50.000 0.59 0.00 37.32 4.45
1513 1681 4.100529 CACAAAGCAAGTTCTCACAACAG 58.899 43.478 0.00 0.00 0.00 3.16
1551 1719 4.439289 GGAGTTATTGGAAGCATGCTGTTC 60.439 45.833 23.48 16.07 0.00 3.18
1593 1762 0.040058 ATGGCATTGCTTCCCAGTCA 59.960 50.000 8.82 0.00 31.12 3.41
1601 1770 0.108585 GCTTCCCAGTCACTCCACAA 59.891 55.000 0.00 0.00 0.00 3.33
1605 1774 2.902608 TCCCAGTCACTCCACAATAGT 58.097 47.619 0.00 0.00 0.00 2.12
1627 1796 6.573434 AGTTGGGTCTTCAAAAGATTTGTTC 58.427 36.000 3.06 0.00 40.18 3.18
1634 1803 7.012358 GTCTTCAAAAGATTTGTTCGCTCTAG 58.988 38.462 3.06 0.00 40.18 2.43
1656 1825 5.380043 AGTTCCTGTTGATCAAACACAGAT 58.620 37.500 22.17 7.17 43.96 2.90
1659 1828 5.375773 TCCTGTTGATCAAACACAGATTCA 58.624 37.500 22.17 8.13 43.96 2.57
1663 1832 7.168637 CCTGTTGATCAAACACAGATTCAAAAG 59.831 37.037 22.17 4.60 43.96 2.27
1946 2116 0.602638 TGGATGCACGTGAACAGGAC 60.603 55.000 22.23 0.00 0.00 3.85
1972 2142 6.636454 TTCCATAAGTCTACTGGAATTGGT 57.364 37.500 10.57 0.00 42.60 3.67
1984 2154 4.536090 ACTGGAATTGGTTCTCTATCCACA 59.464 41.667 0.00 0.00 33.61 4.17
1995 2165 6.267471 GGTTCTCTATCCACAGAATCTCATCT 59.733 42.308 0.00 0.00 31.35 2.90
2033 2276 8.644216 TCATACCATAACATAGGAACAATACGT 58.356 33.333 0.00 0.00 0.00 3.57
2103 2346 4.222145 ACCAGGAGTCGATAGCTTGTTTTA 59.778 41.667 0.00 0.00 0.00 1.52
2104 2347 5.104900 ACCAGGAGTCGATAGCTTGTTTTAT 60.105 40.000 0.00 0.00 0.00 1.40
2322 2565 8.226448 CAGAAGACACATGACAAGAATAGAAAC 58.774 37.037 0.00 0.00 0.00 2.78
2509 2752 5.508489 GGAGTTTAAGGGTTTTGGTAGCAAC 60.508 44.000 6.90 0.00 0.00 4.17
2526 2770 2.939103 GCAACAACTCTCTCACTTGTGT 59.061 45.455 0.46 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.396450 ACATCAATCACCATCGATCTATCAG 58.604 40.000 0.00 0.00 0.00 2.90
12 13 5.356751 GGTAATGCAACTACATCAATCACCA 59.643 40.000 10.50 0.00 0.00 4.17
91 92 5.176774 TGTGTGTTCATCGTGTTTGTATCTC 59.823 40.000 0.00 0.00 0.00 2.75
104 105 4.437239 CAGAGGATAGGTGTGTGTTCATC 58.563 47.826 0.00 0.00 0.00 2.92
105 106 3.369892 GCAGAGGATAGGTGTGTGTTCAT 60.370 47.826 0.00 0.00 0.00 2.57
117 118 8.316946 TGTTCATCCTAATTATGCAGAGGATAG 58.683 37.037 13.47 9.88 45.20 2.08
118 119 8.097038 GTGTTCATCCTAATTATGCAGAGGATA 58.903 37.037 13.47 1.68 45.20 2.59
135 136 2.778299 TGGTGTTAGCTGTGTTCATCC 58.222 47.619 0.00 0.00 0.00 3.51
140 141 2.422127 GTGTGTTGGTGTTAGCTGTGTT 59.578 45.455 0.00 0.00 0.00 3.32
199 202 3.374988 GCTTTCCCTTGCATAATTTTGGC 59.625 43.478 0.00 0.00 0.00 4.52
255 258 2.496899 TTTCCTCTGATGGAAGGCAC 57.503 50.000 8.07 0.00 45.58 5.01
320 326 8.072567 GCTATTATAGAGTTCATGTGCTTTTGG 58.927 37.037 3.04 0.00 0.00 3.28
338 344 7.222031 CGTAGCATCTAAATTGGCGCTATTATA 59.778 37.037 7.64 0.00 34.73 0.98
345 351 1.069906 CCGTAGCATCTAAATTGGCGC 60.070 52.381 0.00 0.00 0.00 6.53
431 441 5.525012 CCCTTTTCCTTTTTCTCTGCAAAAG 59.475 40.000 1.54 1.54 39.84 2.27
433 443 4.714308 TCCCTTTTCCTTTTTCTCTGCAAA 59.286 37.500 0.00 0.00 0.00 3.68
510 520 9.072294 GCGCAAACTTAGATATTGTAAAATTGT 57.928 29.630 0.30 0.00 0.00 2.71
512 522 8.178964 TCGCGCAAACTTAGATATTGTAAAATT 58.821 29.630 8.75 0.00 0.00 1.82
529 628 0.591236 TCAAAAGCAGTCGCGCAAAC 60.591 50.000 8.75 4.78 45.49 2.93
600 699 9.604626 CAAGCAACTCTAACAGATTCTAAAAAG 57.395 33.333 0.00 0.00 0.00 2.27
614 714 3.007940 TGCCTAAGAGCAAGCAACTCTAA 59.992 43.478 3.90 0.00 43.71 2.10
701 818 8.706322 ACAGAAGGAACCATAGTTTATTTTGT 57.294 30.769 0.00 0.00 35.94 2.83
704 821 9.239551 GGTAACAGAAGGAACCATAGTTTATTT 57.760 33.333 0.00 0.00 35.94 1.40
709 826 4.600111 TGGGTAACAGAAGGAACCATAGTT 59.400 41.667 0.00 0.00 37.30 2.24
731 849 3.434637 AGCTGTTGTAAAAGCACGTTTG 58.565 40.909 9.30 0.00 42.06 2.93
760 900 1.312815 GGTGCTGCAGTTTCTCTGTT 58.687 50.000 16.64 0.00 45.23 3.16
762 902 0.590195 GTGGTGCTGCAGTTTCTCTG 59.410 55.000 16.64 0.00 46.12 3.35
763 903 0.536006 GGTGGTGCTGCAGTTTCTCT 60.536 55.000 16.64 0.00 0.00 3.10
764 904 0.819259 TGGTGGTGCTGCAGTTTCTC 60.819 55.000 16.64 5.81 0.00 2.87
765 905 0.395586 TTGGTGGTGCTGCAGTTTCT 60.396 50.000 16.64 0.00 0.00 2.52
766 906 0.249031 GTTGGTGGTGCTGCAGTTTC 60.249 55.000 16.64 6.01 0.00 2.78
767 907 1.675720 GGTTGGTGGTGCTGCAGTTT 61.676 55.000 16.64 0.00 0.00 2.66
768 908 2.127232 GGTTGGTGGTGCTGCAGTT 61.127 57.895 16.64 0.00 0.00 3.16
769 909 2.519302 GGTTGGTGGTGCTGCAGT 60.519 61.111 16.64 0.00 0.00 4.40
770 910 3.297620 GGGTTGGTGGTGCTGCAG 61.298 66.667 10.11 10.11 0.00 4.41
771 911 4.912395 GGGGTTGGTGGTGCTGCA 62.912 66.667 0.00 0.00 0.00 4.41
826 966 3.978718 AGCAAAACTGAAGACAAGCTC 57.021 42.857 0.00 0.00 0.00 4.09
833 973 6.678900 GCAAGAAAGAGAAGCAAAACTGAAGA 60.679 38.462 0.00 0.00 0.00 2.87
893 1034 2.309755 TGAAGGGAATGAAGCTGGTGAT 59.690 45.455 0.00 0.00 0.00 3.06
899 1040 3.012161 AGGGATTTGAAGGGAATGAAGCT 59.988 43.478 0.00 0.00 0.00 3.74
922 1063 3.265791 CAGGTCTTTGAGGATGTGTAGC 58.734 50.000 0.00 0.00 0.00 3.58
947 1115 3.632145 TGTCCTCTTTGTTTGCTTCCTTC 59.368 43.478 0.00 0.00 0.00 3.46
967 1135 1.795170 GCAGTCATTGTTGCCGGTGT 61.795 55.000 1.90 0.00 34.28 4.16
972 1140 1.879380 TGTGTAGCAGTCATTGTTGCC 59.121 47.619 10.72 1.03 41.17 4.52
996 1164 3.438216 TCCTTCTGCAATTCCATGTCA 57.562 42.857 0.00 0.00 0.00 3.58
1056 1224 1.580942 CGTGGGGCTCATGTTGTTG 59.419 57.895 0.00 0.00 0.00 3.33
1057 1225 2.268076 GCGTGGGGCTCATGTTGTT 61.268 57.895 8.64 0.00 39.11 2.83
1072 1240 0.602638 TGTCCGATTGCTTTCTGCGT 60.603 50.000 0.00 0.00 46.63 5.24
1073 1241 0.095935 CTGTCCGATTGCTTTCTGCG 59.904 55.000 0.00 0.00 46.63 5.18
1087 1255 0.462759 GTGCTCTGGTATGCCTGTCC 60.463 60.000 0.16 0.00 35.49 4.02
1179 1347 4.927782 TCACCACAGTGGCCGTGC 62.928 66.667 20.48 0.00 42.67 5.34
1206 1374 1.832912 GAGCCCTCCCGTCATCATT 59.167 57.895 0.00 0.00 0.00 2.57
1245 1413 5.065914 TCTGTGAAGCTAAGAACAAAGCAT 58.934 37.500 0.00 0.00 41.32 3.79
1259 1427 2.169352 TCCCTGAAGCTATCTGTGAAGC 59.831 50.000 0.00 0.00 39.08 3.86
1335 1503 3.868757 TCAAGAGTAACTCCACCATCG 57.131 47.619 0.00 0.00 0.00 3.84
1384 1552 7.869429 AGTTGCATGGAAAAAGTCTAGAAATTG 59.131 33.333 0.00 0.00 0.00 2.32
1385 1553 7.869429 CAGTTGCATGGAAAAAGTCTAGAAATT 59.131 33.333 0.00 0.00 0.00 1.82
1420 1588 1.135689 GGCGATTGCAACAAAGATCGT 60.136 47.619 16.56 0.00 45.35 3.73
1421 1589 1.538276 GGCGATTGCAACAAAGATCG 58.462 50.000 12.32 12.32 45.35 3.69
1425 1593 0.314935 ACAGGGCGATTGCAACAAAG 59.685 50.000 0.00 0.00 45.35 2.77
1443 1611 2.821969 AGATGCCACATTCTGGTCAAAC 59.178 45.455 0.00 0.00 42.99 2.93
1551 1719 0.958876 GGGTGGTTGGGAAGCTAACG 60.959 60.000 0.00 0.00 0.00 3.18
1593 1762 3.650942 TGAAGACCCAACTATTGTGGAGT 59.349 43.478 0.00 0.00 0.00 3.85
1601 1770 7.839680 ACAAATCTTTTGAAGACCCAACTAT 57.160 32.000 6.96 0.00 41.01 2.12
1605 1774 5.587289 CGAACAAATCTTTTGAAGACCCAA 58.413 37.500 6.96 0.00 41.01 4.12
1627 1796 3.510388 TGATCAACAGGAACTAGAGCG 57.490 47.619 0.00 0.00 36.02 5.03
1634 1803 5.695851 ATCTGTGTTTGATCAACAGGAAC 57.304 39.130 20.63 11.82 46.49 3.62
1656 1825 1.253100 CCGCTTAAGGGGCTTTTGAA 58.747 50.000 24.03 0.00 41.34 2.69
1739 1908 5.065859 ACACAAAACATGTTCATGTCGAAGA 59.934 36.000 20.91 0.00 41.46 2.87
1946 2116 4.730949 TTCCAGTAGACTTATGGAACGG 57.269 45.455 14.13 0.00 45.76 4.44
1972 2142 9.241919 GATAGATGAGATTCTGTGGATAGAGAA 57.758 37.037 0.00 0.00 40.08 2.87
2322 2565 2.774774 GCGCTCTGCTGAAGTTCG 59.225 61.111 0.00 0.00 41.73 3.95
2509 2752 4.058817 GGGTTACACAAGTGAGAGAGTTG 58.941 47.826 7.28 0.00 40.42 3.16
2526 2770 3.075283 ACACTTGTTCCATCATGGGGTTA 59.925 43.478 3.05 0.00 38.32 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.