AutoCloner

Multiple sequence alignment - TraesCS3D01G245100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G245100	chr3D	100.000	4769	0	0	1	4769	340722902	340718134	0.000000e+00	8807.0
1	TraesCS3D01G245100	chr3B	96.013	3787	95	26	585	4344	439466663	439462906	0.000000e+00	6106.0
2	TraesCS3D01G245100	chr3B	87.726	497	43	7	1	497	416567053	416566575	8.960000e-157	564.0
3	TraesCS3D01G245100	chr3B	94.000	350	13	5	4427	4769	439462906	439462558	1.520000e-144	523.0
4	TraesCS3D01G245100	chr3A	95.820	3421	116	8	940	4344	463114533	463117942	0.000000e+00	5500.0
5	TraesCS3D01G245100	chr3A	89.787	470	20	15	495	942	463113967	463114430	1.150000e-160	577.0
6	TraesCS3D01G245100	chr3A	91.077	325	19	8	4451	4767	463117955	463118277	9.480000e-117	431.0
7	TraesCS3D01G245100	chr3A	94.737	95	5	0	4340	4434	620584067	620584161	1.070000e-31	148.0
8	TraesCS3D01G245100	chr1D	96.787	498	16	0	1	498	355104479	355103982	0.000000e+00	832.0
9	TraesCS3D01G245100	chr1D	71.608	479	118	12	1198	1670	443552793	443553259	1.080000e-21	115.0
10	TraesCS3D01G245100	chr4D	96.586	498	17	0	1	498	47663388	47662891	0.000000e+00	826.0
11	TraesCS3D01G245100	chr4D	96.573	496	16	1	1	496	364550048	364549554	0.000000e+00	821.0
12	TraesCS3D01G245100	chr6D	95.582	498	22	0	1	498	331530834	331531331	0.000000e+00	798.0
13	TraesCS3D01G245100	chr6D	90.826	109	6	2	4339	4444	273091448	273091555	4.980000e-30	143.0
14	TraesCS3D01G245100	chrUn	100.000	401	0	0	2485	2885	478689329	478689729	0.000000e+00	741.0
15	TraesCS3D01G245100	chrUn	95.745	94	3	1	4341	4434	99839683	99839775	2.970000e-32	150.0
16	TraesCS3D01G245100	chrUn	94.915	59	2	1	4679	4737	83146535	83146592	1.830000e-14	91.6
17	TraesCS3D01G245100	chrUn	94.915	59	2	1	4679	4737	83175181	83175238	1.830000e-14	91.6
18	TraesCS3D01G245100	chr2A	86.627	501	45	9	1	497	773578752	773578270	7.020000e-148	534.0
19	TraesCS3D01G245100	chr6A	85.629	501	49	6	1	497	97317896	97317415	5.510000e-139	505.0
20	TraesCS3D01G245100	chr6A	96.591	88	3	0	4338	4425	204478641	204478554	3.850000e-31	147.0
21	TraesCS3D01G245100	chr6B	89.840	187	19	0	1	187	172020582	172020396	1.710000e-59	241.0
22	TraesCS3D01G245100	chr7D	98.837	86	1	0	4340	4425	550999487	550999402	2.300000e-33	154.0
23	TraesCS3D01G245100	chr7D	94.915	59	2	1	4679	4737	557951848	557951905	1.830000e-14	91.6
24	TraesCS3D01G245100	chr7D	94.915	59	2	1	4679	4737	574812601	574812544	1.830000e-14	91.6
25	TraesCS3D01G245100	chr5D	98.824	85	1	0	4341	4425	351004129	351004213	8.270000e-33	152.0
26	TraesCS3D01G245100	chr7A	95.604	91	4	0	4335	4425	583874892	583874982	3.850000e-31	147.0
27	TraesCS3D01G245100	chr7A	90.566	106	8	2	4331	4435	57610060	57610164	6.440000e-29	139.0
28	TraesCS3D01G245100	chr7A	94.915	59	2	1	4679	4737	694882672	694882615	1.830000e-14	91.6
29	TraesCS3D01G245100	chr7A	94.915	59	2	1	4679	4737	695036106	695036049	1.830000e-14	91.6
30	TraesCS3D01G245100	chr2D	93.069	101	4	3	4334	4433	476839029	476839127	1.380000e-30	145.0
31	TraesCS3D01G245100	chr4A	94.915	59	2	1	4679	4737	658383375	658383318	1.830000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G245100	chr3D	340718134	340722902	4768	True	8807.000000	8807	100.0000	1	4769	1	chr3D.!!$R1	4768
1	TraesCS3D01G245100	chr3B	439462558	439466663	4105	True	3314.500000	6106	95.0065	585	4769	2	chr3B.!!$R2	4184
2	TraesCS3D01G245100	chr3A	463113967	463118277	4310	False	2169.333333	5500	92.2280	495	4767	3	chr3A.!!$F2	4272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
375	376	0.031994	GAGAGAAGCGAGATCCTGGC	59.968	60.0	0.00	35.46	4.85	F
395	396	0.031994	CAGGTTTGTGCTTTTCCCGG	59.968	55.0	0.00	0.00	5.73	F
407	408	0.179936	TTTCCCGGTGTACCAAACGT	59.820	50.0	0.00	35.14	3.99	F
576	581	0.328258	TTCCTCTGGGGCAAAGTAGC	59.672	55.0	0.00	34.39	3.58	F
3211	3357	0.182775	GTTTCCAGTGGGGTGACAGT	59.817	55.0	9.92	38.11	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2146	2292	0.248784	GCAAATCCGCCTGCATTCTC	60.249	55.000	0.00	0.00	38.48	2.87	R
2318	2464	3.721575	AGGTAATACCAGGATGATTGGCA	59.278	43.478	12.54	0.00	41.95	4.92	R
2483	2629	4.825422	TGTTGTGCATTTTGAAAAGGACA	58.175	34.783	6.49	8.13	36.43	4.02	R
3273	3419	2.837532	ACAAATTGCATGAACCCCAC	57.162	45.000	0.00	0.00	0.00	4.61	R
4408	4566	0.035739	GGCACTCCCTCCGTAAACAA	59.964	55.000	0.00	0.00	0.00	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	9.401058	ACAATAGTGAGGAAAATAATCAGAAGG	57.599	33.333	0.00	0.00	0.00	3.46
40	41	8.348507	CAATAGTGAGGAAAATAATCAGAAGGC	58.651	37.037	0.00	0.00	0.00	4.35
41	42	5.196695	AGTGAGGAAAATAATCAGAAGGCC	58.803	41.667	0.00	0.00	0.00	5.19
42	43	4.339530	GTGAGGAAAATAATCAGAAGGCCC	59.660	45.833	0.00	0.00	0.00	5.80
43	44	4.230502	TGAGGAAAATAATCAGAAGGCCCT	59.769	41.667	0.00	0.00	0.00	5.19
44	45	4.797743	AGGAAAATAATCAGAAGGCCCTC	58.202	43.478	0.00	0.00	0.00	4.30
45	46	3.891977	GGAAAATAATCAGAAGGCCCTCC	59.108	47.826	0.00	0.00	0.00	4.30
46	47	4.536765	GAAAATAATCAGAAGGCCCTCCA	58.463	43.478	0.00	0.00	33.74	3.86
47	48	4.821532	AAATAATCAGAAGGCCCTCCAT	57.178	40.909	0.00	0.00	33.74	3.41
48	49	4.821532	AATAATCAGAAGGCCCTCCATT	57.178	40.909	0.00	0.00	33.74	3.16
49	50	4.821532	ATAATCAGAAGGCCCTCCATTT	57.178	40.909	0.00	0.00	33.74	2.32
50	51	2.744352	ATCAGAAGGCCCTCCATTTC	57.256	50.000	0.00	0.00	33.74	2.17
51	52	0.625849	TCAGAAGGCCCTCCATTTCC	59.374	55.000	0.00	0.00	33.74	3.13
52	53	0.332632	CAGAAGGCCCTCCATTTCCA	59.667	55.000	0.00	0.00	33.74	3.53
53	54	1.084018	AGAAGGCCCTCCATTTCCAA	58.916	50.000	0.00	0.00	33.74	3.53
54	55	1.186200	GAAGGCCCTCCATTTCCAAC	58.814	55.000	0.00	0.00	33.74	3.77
55	56	0.252239	AAGGCCCTCCATTTCCAACC	60.252	55.000	0.00	0.00	33.74	3.77
56	57	2.052104	GGCCCTCCATTTCCAACCG	61.052	63.158	0.00	0.00	0.00	4.44
57	58	1.304134	GCCCTCCATTTCCAACCGT	60.304	57.895	0.00	0.00	0.00	4.83
58	59	1.595093	GCCCTCCATTTCCAACCGTG	61.595	60.000	0.00	0.00	0.00	4.94
59	60	1.595093	CCCTCCATTTCCAACCGTGC	61.595	60.000	0.00	0.00	0.00	5.34
60	61	1.595093	CCTCCATTTCCAACCGTGCC	61.595	60.000	0.00	0.00	0.00	5.01
61	62	1.595093	CTCCATTTCCAACCGTGCCC	61.595	60.000	0.00	0.00	0.00	5.36
62	63	2.566010	CATTTCCAACCGTGCCCG	59.434	61.111	0.00	0.00	0.00	6.13
73	74	4.783621	GTGCCCGGAGCTCATGCA	62.784	66.667	17.19	17.07	44.23	3.96
74	75	4.783621	TGCCCGGAGCTCATGCAC	62.784	66.667	17.19	0.94	44.23	4.57
75	76	4.479993	GCCCGGAGCTCATGCACT	62.480	66.667	17.19	0.00	42.74	4.40
76	77	3.094062	GCCCGGAGCTCATGCACTA	62.094	63.158	17.19	0.00	42.74	2.74
77	78	1.068753	CCCGGAGCTCATGCACTAG	59.931	63.158	17.19	0.00	42.74	2.57
78	79	1.593750	CCGGAGCTCATGCACTAGC	60.594	63.158	17.19	13.03	42.74	3.42
82	83	3.473147	AGCTCATGCACTAGCTTGG	57.527	52.632	16.84	0.00	46.82	3.61
83	84	0.747283	AGCTCATGCACTAGCTTGGC	60.747	55.000	16.84	4.01	46.82	4.52
84	85	1.722636	GCTCATGCACTAGCTTGGCC	61.723	60.000	13.52	0.00	43.82	5.36
85	86	0.107312	CTCATGCACTAGCTTGGCCT	60.107	55.000	3.32	0.00	43.82	5.19
86	87	0.107508	TCATGCACTAGCTTGGCCTC	60.108	55.000	3.32	0.00	43.82	4.70
87	88	0.393402	CATGCACTAGCTTGGCCTCA	60.393	55.000	3.32	0.00	40.97	3.86
88	89	0.329261	ATGCACTAGCTTGGCCTCAA	59.671	50.000	3.32	0.00	42.74	3.02
89	90	0.110295	TGCACTAGCTTGGCCTCAAA	59.890	50.000	3.32	0.00	42.74	2.69
90	91	0.523519	GCACTAGCTTGGCCTCAAAC	59.476	55.000	3.32	0.00	37.91	2.93
91	92	1.896220	CACTAGCTTGGCCTCAAACA	58.104	50.000	3.32	0.00	31.77	2.83
92	93	2.229792	CACTAGCTTGGCCTCAAACAA	58.770	47.619	3.32	0.00	31.77	2.83
93	94	2.227388	CACTAGCTTGGCCTCAAACAAG	59.773	50.000	3.32	0.00	45.19	3.16
94	95	2.106511	ACTAGCTTGGCCTCAAACAAGA	59.893	45.455	3.32	0.00	45.22	3.02
95	96	2.071778	AGCTTGGCCTCAAACAAGAA	57.928	45.000	3.32	0.00	45.22	2.52
96	97	1.959282	AGCTTGGCCTCAAACAAGAAG	59.041	47.619	3.32	0.00	45.22	2.85
97	98	1.956477	GCTTGGCCTCAAACAAGAAGA	59.044	47.619	3.32	0.00	45.22	2.87
98	99	2.362077	GCTTGGCCTCAAACAAGAAGAA	59.638	45.455	3.32	0.00	45.22	2.52
99	100	3.796844	GCTTGGCCTCAAACAAGAAGAAC	60.797	47.826	3.32	0.00	45.22	3.01
100	101	1.946768	TGGCCTCAAACAAGAAGAACG	59.053	47.619	3.32	0.00	0.00	3.95
101	102	1.947456	GGCCTCAAACAAGAAGAACGT	59.053	47.619	0.00	0.00	0.00	3.99
102	103	2.031944	GGCCTCAAACAAGAAGAACGTC	60.032	50.000	0.00	0.00	0.00	4.34
103	104	2.348591	GCCTCAAACAAGAAGAACGTCG	60.349	50.000	0.00	0.00	0.00	5.12
104	105	2.348591	CCTCAAACAAGAAGAACGTCGC	60.349	50.000	0.00	0.00	0.00	5.19
105	106	2.540101	CTCAAACAAGAAGAACGTCGCT	59.460	45.455	0.00	0.00	0.00	4.93
106	107	3.708890	TCAAACAAGAAGAACGTCGCTA	58.291	40.909	0.00	0.00	0.00	4.26
107	108	4.304110	TCAAACAAGAAGAACGTCGCTAT	58.696	39.130	0.00	0.00	0.00	2.97
108	109	5.463286	TCAAACAAGAAGAACGTCGCTATA	58.537	37.500	0.00	0.00	0.00	1.31
109	110	6.097356	TCAAACAAGAAGAACGTCGCTATAT	58.903	36.000	0.00	0.00	0.00	0.86
110	111	7.252708	TCAAACAAGAAGAACGTCGCTATATA	58.747	34.615	0.00	0.00	0.00	0.86
111	112	7.919091	TCAAACAAGAAGAACGTCGCTATATAT	59.081	33.333	0.00	0.00	0.00	0.86
112	113	8.540492	CAAACAAGAAGAACGTCGCTATATATT	58.460	33.333	0.00	0.00	0.00	1.28
113	114	7.624706	ACAAGAAGAACGTCGCTATATATTG	57.375	36.000	0.00	0.00	0.00	1.90
114	115	6.641314	ACAAGAAGAACGTCGCTATATATTGG	59.359	38.462	0.00	0.00	0.00	3.16
115	116	5.162075	AGAAGAACGTCGCTATATATTGGC	58.838	41.667	0.00	0.00	0.00	4.52
116	117	4.785511	AGAACGTCGCTATATATTGGCT	57.214	40.909	0.00	0.00	0.00	4.75
117	118	4.486090	AGAACGTCGCTATATATTGGCTG	58.514	43.478	0.00	0.00	0.00	4.85
118	119	2.607187	ACGTCGCTATATATTGGCTGC	58.393	47.619	0.00	0.00	0.00	5.25
119	120	1.927174	CGTCGCTATATATTGGCTGCC	59.073	52.381	12.87	12.87	0.00	4.85
120	121	2.673893	CGTCGCTATATATTGGCTGCCA	60.674	50.000	19.30	19.30	0.00	4.92
129	130	1.531365	TTGGCTGCCAAACTCTGGG	60.531	57.895	30.60	0.00	46.54	4.45
130	131	2.116125	GGCTGCCAAACTCTGGGT	59.884	61.111	15.17	0.00	46.54	4.51
131	132	1.973812	GGCTGCCAAACTCTGGGTC	60.974	63.158	15.17	0.00	46.54	4.46
132	133	1.073897	GCTGCCAAACTCTGGGTCT	59.926	57.895	0.00	0.00	46.54	3.85
133	134	0.324943	GCTGCCAAACTCTGGGTCTA	59.675	55.000	0.00	0.00	46.54	2.59
134	135	1.065126	GCTGCCAAACTCTGGGTCTAT	60.065	52.381	0.00	0.00	46.54	1.98
135	136	2.619074	GCTGCCAAACTCTGGGTCTATT	60.619	50.000	0.00	0.00	46.54	1.73
136	137	3.012518	CTGCCAAACTCTGGGTCTATTG	58.987	50.000	0.00	0.00	46.54	1.90
137	138	2.375174	TGCCAAACTCTGGGTCTATTGT	59.625	45.455	0.00	0.00	46.54	2.71
138	139	3.010420	GCCAAACTCTGGGTCTATTGTC	58.990	50.000	0.00	0.00	46.54	3.18
139	140	3.262420	CCAAACTCTGGGTCTATTGTCG	58.738	50.000	0.00	0.00	42.17	4.35
140	141	3.306780	CCAAACTCTGGGTCTATTGTCGT	60.307	47.826	0.00	0.00	42.17	4.34
141	142	3.870633	AACTCTGGGTCTATTGTCGTC	57.129	47.619	0.00	0.00	0.00	4.20
142	143	1.743958	ACTCTGGGTCTATTGTCGTCG	59.256	52.381	0.00	0.00	0.00	5.12
143	144	1.743958	CTCTGGGTCTATTGTCGTCGT	59.256	52.381	0.00	0.00	0.00	4.34
144	145	2.941064	CTCTGGGTCTATTGTCGTCGTA	59.059	50.000	0.00	0.00	0.00	3.43
145	146	2.679837	TCTGGGTCTATTGTCGTCGTAC	59.320	50.000	0.00	0.00	0.00	3.67
146	147	1.398041	TGGGTCTATTGTCGTCGTACG	59.602	52.381	9.53	9.53	44.19	3.67
147	148	1.398390	GGGTCTATTGTCGTCGTACGT	59.602	52.381	16.05	0.00	43.14	3.57
148	149	2.159517	GGGTCTATTGTCGTCGTACGTT	60.160	50.000	16.05	0.00	43.14	3.99
149	150	2.842485	GGTCTATTGTCGTCGTACGTTG	59.158	50.000	16.05	9.09	43.14	4.10
150	151	2.842485	GTCTATTGTCGTCGTACGTTGG	59.158	50.000	16.05	5.92	43.14	3.77
151	152	1.580704	CTATTGTCGTCGTACGTTGGC	59.419	52.381	16.05	10.93	43.14	4.52
152	153	0.038892	ATTGTCGTCGTACGTTGGCT	60.039	50.000	16.05	0.00	43.14	4.75
153	154	0.935831	TTGTCGTCGTACGTTGGCTG	60.936	55.000	16.05	0.38	43.14	4.85
154	155	2.429571	TCGTCGTACGTTGGCTGC	60.430	61.111	16.05	0.00	43.14	5.25
155	156	3.475774	CGTCGTACGTTGGCTGCC	61.476	66.667	16.05	12.87	36.74	4.85
156	157	2.356553	GTCGTACGTTGGCTGCCA	60.357	61.111	19.30	19.30	0.00	4.92
157	158	1.740296	GTCGTACGTTGGCTGCCAT	60.740	57.895	24.03	10.60	31.53	4.40
158	159	1.447140	TCGTACGTTGGCTGCCATC	60.447	57.895	24.03	20.50	31.53	3.51
159	160	1.447838	CGTACGTTGGCTGCCATCT	60.448	57.895	24.03	13.34	31.53	2.90
160	161	1.019278	CGTACGTTGGCTGCCATCTT	61.019	55.000	24.03	17.39	31.53	2.40
161	162	0.447801	GTACGTTGGCTGCCATCTTG	59.552	55.000	24.03	14.48	31.53	3.02
162	163	0.036164	TACGTTGGCTGCCATCTTGT	59.964	50.000	24.03	19.18	31.53	3.16
163	164	1.210931	CGTTGGCTGCCATCTTGTG	59.789	57.895	24.03	5.13	31.53	3.33
164	165	1.518056	CGTTGGCTGCCATCTTGTGT	61.518	55.000	24.03	0.00	31.53	3.72
165	166	0.675633	GTTGGCTGCCATCTTGTGTT	59.324	50.000	24.03	0.00	31.53	3.32
166	167	1.885887	GTTGGCTGCCATCTTGTGTTA	59.114	47.619	24.03	0.16	31.53	2.41
167	168	1.533625	TGGCTGCCATCTTGTGTTAC	58.466	50.000	19.30	0.00	0.00	2.50
168	169	1.073763	TGGCTGCCATCTTGTGTTACT	59.926	47.619	19.30	0.00	0.00	2.24
169	170	1.740025	GGCTGCCATCTTGTGTTACTC	59.260	52.381	15.17	0.00	0.00	2.59
170	171	2.616510	GGCTGCCATCTTGTGTTACTCT	60.617	50.000	15.17	0.00	0.00	3.24
171	172	2.675348	GCTGCCATCTTGTGTTACTCTC	59.325	50.000	0.00	0.00	0.00	3.20
172	173	3.265791	CTGCCATCTTGTGTTACTCTCC	58.734	50.000	0.00	0.00	0.00	3.71
173	174	2.906389	TGCCATCTTGTGTTACTCTCCT	59.094	45.455	0.00	0.00	0.00	3.69
174	175	3.055819	TGCCATCTTGTGTTACTCTCCTC	60.056	47.826	0.00	0.00	0.00	3.71
175	176	3.196685	GCCATCTTGTGTTACTCTCCTCT	59.803	47.826	0.00	0.00	0.00	3.69
176	177	4.753233	CCATCTTGTGTTACTCTCCTCTG	58.247	47.826	0.00	0.00	0.00	3.35
177	178	3.944055	TCTTGTGTTACTCTCCTCTGC	57.056	47.619	0.00	0.00	0.00	4.26
178	179	3.501349	TCTTGTGTTACTCTCCTCTGCT	58.499	45.455	0.00	0.00	0.00	4.24
179	180	3.508012	TCTTGTGTTACTCTCCTCTGCTC	59.492	47.826	0.00	0.00	0.00	4.26
180	181	2.876581	TGTGTTACTCTCCTCTGCTCA	58.123	47.619	0.00	0.00	0.00	4.26
181	182	3.230976	TGTGTTACTCTCCTCTGCTCAA	58.769	45.455	0.00	0.00	0.00	3.02
182	183	3.256879	TGTGTTACTCTCCTCTGCTCAAG	59.743	47.826	0.00	0.00	0.00	3.02
183	184	2.232452	TGTTACTCTCCTCTGCTCAAGC	59.768	50.000	0.00	0.00	42.50	4.01
184	185	2.495669	GTTACTCTCCTCTGCTCAAGCT	59.504	50.000	3.32	0.00	42.66	3.74
185	186	1.185315	ACTCTCCTCTGCTCAAGCTC	58.815	55.000	3.32	0.00	42.66	4.09
186	187	0.101040	CTCTCCTCTGCTCAAGCTCG	59.899	60.000	3.32	0.00	42.66	5.03
187	188	1.141449	CTCCTCTGCTCAAGCTCGG	59.859	63.158	3.32	1.60	42.66	4.63
188	189	2.511145	CCTCTGCTCAAGCTCGGC	60.511	66.667	3.32	0.00	42.66	5.54
189	190	2.884685	CTCTGCTCAAGCTCGGCG	60.885	66.667	0.00	0.00	42.66	6.46
214	215	2.719979	GCGAATGGCATCTGCTGG	59.280	61.111	14.52	0.00	42.87	4.85
215	216	2.842256	GCGAATGGCATCTGCTGGG	61.842	63.158	14.52	0.00	42.87	4.45
216	217	2.191513	CGAATGGCATCTGCTGGGG	61.192	63.158	0.00	0.00	41.70	4.96
217	218	1.076485	GAATGGCATCTGCTGGGGT	60.076	57.895	0.00	0.00	41.70	4.95
218	219	1.380785	AATGGCATCTGCTGGGGTG	60.381	57.895	0.00	0.00	41.70	4.61
219	220	2.159101	AATGGCATCTGCTGGGGTGT	62.159	55.000	0.00	0.00	41.70	4.16
220	221	1.281199	ATGGCATCTGCTGGGGTGTA	61.281	55.000	0.00	0.00	41.70	2.90
221	222	1.302949	GGCATCTGCTGGGGTGTAA	59.697	57.895	1.70	0.00	41.70	2.41
222	223	0.749454	GGCATCTGCTGGGGTGTAAG	60.749	60.000	1.70	0.00	41.70	2.34
223	224	0.035056	GCATCTGCTGGGGTGTAAGT	60.035	55.000	0.00	0.00	38.21	2.24
224	225	1.742761	CATCTGCTGGGGTGTAAGTG	58.257	55.000	0.00	0.00	0.00	3.16
225	226	0.035056	ATCTGCTGGGGTGTAAGTGC	60.035	55.000	0.00	0.00	0.00	4.40
226	227	2.031919	TGCTGGGGTGTAAGTGCG	59.968	61.111	0.00	0.00	0.00	5.34
227	228	2.746277	GCTGGGGTGTAAGTGCGG	60.746	66.667	0.00	0.00	0.00	5.69
228	229	2.046314	CTGGGGTGTAAGTGCGGG	60.046	66.667	0.00	0.00	0.00	6.13
229	230	3.622060	CTGGGGTGTAAGTGCGGGG	62.622	68.421	0.00	0.00	0.00	5.73
232	233	4.338710	GGTGTAAGTGCGGGGCCA	62.339	66.667	4.39	0.00	0.00	5.36
233	234	2.281900	GTGTAAGTGCGGGGCCAA	60.282	61.111	4.39	0.00	0.00	4.52
234	235	1.677633	GTGTAAGTGCGGGGCCAAT	60.678	57.895	4.39	0.00	0.00	3.16
235	236	1.677300	TGTAAGTGCGGGGCCAATG	60.677	57.895	4.39	0.00	0.00	2.82
236	237	2.753849	TAAGTGCGGGGCCAATGC	60.754	61.111	4.39	6.80	0.00	3.56
237	238	3.575703	TAAGTGCGGGGCCAATGCA	62.576	57.895	12.54	12.54	40.13	3.96
243	244	3.145551	GGGGCCAATGCAGCAGAG	61.146	66.667	4.39	0.00	40.13	3.35
244	245	2.044650	GGGCCAATGCAGCAGAGA	60.045	61.111	4.39	0.00	40.13	3.10
245	246	2.413142	GGGCCAATGCAGCAGAGAC	61.413	63.158	4.39	0.00	40.13	3.36
246	247	2.413142	GGCCAATGCAGCAGAGACC	61.413	63.158	0.00	0.00	40.13	3.85
247	248	2.758089	GCCAATGCAGCAGAGACCG	61.758	63.158	0.00	0.00	37.47	4.79
248	249	2.110967	CCAATGCAGCAGAGACCGG	61.111	63.158	0.00	0.00	0.00	5.28
249	250	2.110967	CAATGCAGCAGAGACCGGG	61.111	63.158	6.32	0.00	0.00	5.73
250	251	2.293318	AATGCAGCAGAGACCGGGA	61.293	57.895	6.32	0.00	0.00	5.14
251	252	1.841302	AATGCAGCAGAGACCGGGAA	61.841	55.000	6.32	0.00	0.00	3.97
252	253	2.125350	GCAGCAGAGACCGGGAAG	60.125	66.667	6.32	0.00	0.00	3.46
254	255	1.984570	CAGCAGAGACCGGGAAGGA	60.985	63.158	6.32	0.00	45.00	3.36
255	256	1.985116	AGCAGAGACCGGGAAGGAC	60.985	63.158	6.32	0.00	45.00	3.85
256	257	2.283529	GCAGAGACCGGGAAGGACA	61.284	63.158	6.32	0.00	45.00	4.02
257	258	1.592223	CAGAGACCGGGAAGGACAC	59.408	63.158	6.32	0.00	45.00	3.67
258	259	1.977544	AGAGACCGGGAAGGACACG	60.978	63.158	6.32	0.00	45.00	4.49
265	266	3.998672	GGAAGGACACGGCCACGA	61.999	66.667	2.24	0.00	44.60	4.35
266	267	2.737376	GAAGGACACGGCCACGAC	60.737	66.667	2.24	0.00	44.60	4.34
267	268	4.657824	AAGGACACGGCCACGACG	62.658	66.667	2.24	0.00	44.60	5.12
310	311	3.245315	CAGTGCGCGCGTAGGTAC	61.245	66.667	32.35	17.79	0.00	3.34
320	321	2.314256	CGTAGGTACGCGATCCTCA	58.686	57.895	24.20	12.18	43.14	3.86
321	322	0.873054	CGTAGGTACGCGATCCTCAT	59.127	55.000	24.20	9.14	43.14	2.90
322	323	1.399855	CGTAGGTACGCGATCCTCATG	60.400	57.143	24.20	14.40	43.14	3.07
323	324	1.607628	GTAGGTACGCGATCCTCATGT	59.392	52.381	24.20	8.56	35.51	3.21
324	325	0.385751	AGGTACGCGATCCTCATGTG	59.614	55.000	15.93	0.00	0.00	3.21
325	326	1.215655	GGTACGCGATCCTCATGTGC	61.216	60.000	15.93	0.00	0.00	4.57
327	328	2.583319	CGCGATCCTCATGTGCGT	60.583	61.111	0.00	0.00	43.50	5.24
328	329	2.863853	CGCGATCCTCATGTGCGTG	61.864	63.158	0.00	0.00	43.50	5.34
329	330	1.811266	GCGATCCTCATGTGCGTGT	60.811	57.895	0.00	0.00	0.00	4.49
330	331	2.001357	CGATCCTCATGTGCGTGTG	58.999	57.895	0.00	0.00	0.00	3.82
331	332	1.717937	GATCCTCATGTGCGTGTGC	59.282	57.895	0.00	0.00	43.20	4.57
342	343	3.831614	CGTGTGCAAGTACGCGTA	58.168	55.556	16.41	16.41	46.24	4.42
343	344	1.409579	CGTGTGCAAGTACGCGTAC	59.590	57.895	35.97	35.97	46.24	3.67
344	345	1.270110	CGTGTGCAAGTACGCGTACA	61.270	55.000	41.10	25.77	46.24	2.90
345	346	0.160182	GTGTGCAAGTACGCGTACAC	59.840	55.000	41.10	31.82	38.48	2.90
346	347	0.248949	TGTGCAAGTACGCGTACACA	60.249	50.000	41.10	33.60	38.48	3.72
347	348	1.065358	GTGCAAGTACGCGTACACAT	58.935	50.000	41.10	27.67	38.48	3.21
348	349	2.252747	GTGCAAGTACGCGTACACATA	58.747	47.619	41.10	25.78	38.48	2.29
349	350	2.027214	GTGCAAGTACGCGTACACATAC	59.973	50.000	41.10	30.53	38.48	2.39
362	363	5.481200	GTACACATACGCTAGTGAGAGAA	57.519	43.478	10.99	0.00	39.03	2.87
363	364	4.624336	ACACATACGCTAGTGAGAGAAG	57.376	45.455	10.99	0.00	39.03	2.85
364	365	3.181495	ACACATACGCTAGTGAGAGAAGC	60.181	47.826	10.99	0.00	39.03	3.86
370	371	3.268013	GCTAGTGAGAGAAGCGAGATC	57.732	52.381	0.00	0.00	0.00	2.75
371	372	2.031157	GCTAGTGAGAGAAGCGAGATCC	60.031	54.545	0.00	0.00	0.00	3.36
372	373	2.435372	AGTGAGAGAAGCGAGATCCT	57.565	50.000	0.00	0.00	0.00	3.24
373	374	2.023673	AGTGAGAGAAGCGAGATCCTG	58.976	52.381	0.00	0.00	0.00	3.86
374	375	1.066908	GTGAGAGAAGCGAGATCCTGG	59.933	57.143	0.00	0.00	0.00	4.45
375	376	0.031994	GAGAGAAGCGAGATCCTGGC	59.968	60.000	0.00	0.00	35.46	4.85
376	377	1.068921	GAGAAGCGAGATCCTGGCC	59.931	63.158	0.00	0.00	35.84	5.36
377	378	1.680522	GAGAAGCGAGATCCTGGCCA	61.681	60.000	4.71	4.71	35.84	5.36
378	379	1.227497	GAAGCGAGATCCTGGCCAG	60.227	63.158	26.87	26.87	35.84	4.85
387	388	2.203538	CCTGGCCAGGTTTGTGCT	60.204	61.111	39.52	0.00	43.61	4.40
388	389	1.833934	CCTGGCCAGGTTTGTGCTT	60.834	57.895	39.52	0.00	43.61	3.91
389	390	1.402107	CCTGGCCAGGTTTGTGCTTT	61.402	55.000	39.52	0.00	43.61	3.51
390	391	0.465287	CTGGCCAGGTTTGTGCTTTT	59.535	50.000	26.14	0.00	0.00	2.27
391	392	0.463620	TGGCCAGGTTTGTGCTTTTC	59.536	50.000	0.00	0.00	0.00	2.29
392	393	0.249868	GGCCAGGTTTGTGCTTTTCC	60.250	55.000	0.00	0.00	0.00	3.13
393	394	0.249868	GCCAGGTTTGTGCTTTTCCC	60.250	55.000	0.00	0.00	0.00	3.97
394	395	0.031994	CCAGGTTTGTGCTTTTCCCG	59.968	55.000	0.00	0.00	0.00	5.14
395	396	0.031994	CAGGTTTGTGCTTTTCCCGG	59.968	55.000	0.00	0.00	0.00	5.73
396	397	0.396556	AGGTTTGTGCTTTTCCCGGT	60.397	50.000	0.00	0.00	0.00	5.28
397	398	0.249280	GGTTTGTGCTTTTCCCGGTG	60.249	55.000	0.00	0.00	0.00	4.94
398	399	0.458260	GTTTGTGCTTTTCCCGGTGT	59.542	50.000	0.00	0.00	0.00	4.16
399	400	1.677052	GTTTGTGCTTTTCCCGGTGTA	59.323	47.619	0.00	0.00	0.00	2.90
400	401	1.310904	TTGTGCTTTTCCCGGTGTAC	58.689	50.000	0.00	0.00	0.00	2.90
401	402	0.535553	TGTGCTTTTCCCGGTGTACC	60.536	55.000	0.00	0.00	0.00	3.34
402	403	0.535553	GTGCTTTTCCCGGTGTACCA	60.536	55.000	0.00	0.00	35.14	3.25
403	404	0.183014	TGCTTTTCCCGGTGTACCAA	59.817	50.000	0.00	0.00	35.14	3.67
404	405	1.320507	GCTTTTCCCGGTGTACCAAA	58.679	50.000	0.00	0.00	35.14	3.28
405	406	1.001048	GCTTTTCCCGGTGTACCAAAC	60.001	52.381	0.00	0.00	35.14	2.93
406	407	1.264826	CTTTTCCCGGTGTACCAAACG	59.735	52.381	0.00	0.00	35.14	3.60
407	408	0.179936	TTTCCCGGTGTACCAAACGT	59.820	50.000	0.00	0.00	35.14	3.99
408	409	1.043816	TTCCCGGTGTACCAAACGTA	58.956	50.000	0.00	0.00	35.14	3.57
409	410	1.265236	TCCCGGTGTACCAAACGTAT	58.735	50.000	0.00	0.00	35.14	3.06
410	411	1.622811	TCCCGGTGTACCAAACGTATT	59.377	47.619	0.00	0.00	35.14	1.89
411	412	2.038295	TCCCGGTGTACCAAACGTATTT	59.962	45.455	0.00	0.00	35.14	1.40
412	413	3.259374	TCCCGGTGTACCAAACGTATTTA	59.741	43.478	0.00	0.00	35.14	1.40
413	414	3.618150	CCCGGTGTACCAAACGTATTTAG	59.382	47.826	0.00	0.00	35.14	1.85
414	415	3.618150	CCGGTGTACCAAACGTATTTAGG	59.382	47.826	0.00	0.00	35.14	2.69
415	416	3.618150	CGGTGTACCAAACGTATTTAGGG	59.382	47.826	1.50	0.00	35.14	3.53
416	417	4.578871	GGTGTACCAAACGTATTTAGGGT	58.421	43.478	0.00	0.00	35.64	4.34
417	418	5.003160	GGTGTACCAAACGTATTTAGGGTT	58.997	41.667	0.00	0.00	35.64	4.11
418	419	5.122239	GGTGTACCAAACGTATTTAGGGTTC	59.878	44.000	0.00	0.00	35.64	3.62
419	420	4.928615	TGTACCAAACGTATTTAGGGTTCG	59.071	41.667	0.00	0.00	29.36	3.95
420	421	3.337358	ACCAAACGTATTTAGGGTTCGG	58.663	45.455	0.00	0.00	0.00	4.30
421	422	3.007831	ACCAAACGTATTTAGGGTTCGGA	59.992	43.478	0.00	0.00	0.00	4.55
422	423	4.193865	CCAAACGTATTTAGGGTTCGGAT	58.806	43.478	0.00	0.00	0.00	4.18
423	424	5.104982	ACCAAACGTATTTAGGGTTCGGATA	60.105	40.000	0.00	0.00	0.00	2.59
424	425	5.464389	CCAAACGTATTTAGGGTTCGGATAG	59.536	44.000	0.00	0.00	0.00	2.08
425	426	6.275335	CAAACGTATTTAGGGTTCGGATAGA	58.725	40.000	0.00	0.00	0.00	1.98
426	427	6.661304	AACGTATTTAGGGTTCGGATAGAT	57.339	37.500	0.00	0.00	0.00	1.98
427	428	6.661304	ACGTATTTAGGGTTCGGATAGATT	57.339	37.500	0.00	0.00	0.00	2.40
428	429	6.453092	ACGTATTTAGGGTTCGGATAGATTG	58.547	40.000	0.00	0.00	0.00	2.67
429	430	5.867716	CGTATTTAGGGTTCGGATAGATTGG	59.132	44.000	0.00	0.00	0.00	3.16
430	431	4.699925	TTTAGGGTTCGGATAGATTGGG	57.300	45.455	0.00	0.00	0.00	4.12
431	432	2.489528	AGGGTTCGGATAGATTGGGA	57.510	50.000	0.00	0.00	0.00	4.37
432	433	2.991580	AGGGTTCGGATAGATTGGGAT	58.008	47.619	0.00	0.00	0.00	3.85
433	434	2.907042	AGGGTTCGGATAGATTGGGATC	59.093	50.000	0.00	0.00	0.00	3.36
434	435	2.637872	GGGTTCGGATAGATTGGGATCA	59.362	50.000	0.00	0.00	34.60	2.92
435	436	3.307059	GGGTTCGGATAGATTGGGATCAG	60.307	52.174	0.00	0.00	34.60	2.90
436	437	3.578716	GGTTCGGATAGATTGGGATCAGA	59.421	47.826	0.00	0.00	34.60	3.27
437	438	4.040461	GGTTCGGATAGATTGGGATCAGAA	59.960	45.833	0.00	0.00	35.01	3.02
438	439	5.454755	GGTTCGGATAGATTGGGATCAGAAA	60.455	44.000	0.00	0.00	37.79	2.52
439	440	5.474578	TCGGATAGATTGGGATCAGAAAG	57.525	43.478	0.00	0.00	34.60	2.62
440	441	4.284490	TCGGATAGATTGGGATCAGAAAGG	59.716	45.833	0.00	0.00	34.60	3.11
441	442	4.040952	CGGATAGATTGGGATCAGAAAGGT	59.959	45.833	0.00	0.00	34.60	3.50
442	443	5.555966	GGATAGATTGGGATCAGAAAGGTC	58.444	45.833	0.00	0.00	34.60	3.85
443	444	5.072329	GGATAGATTGGGATCAGAAAGGTCA	59.928	44.000	0.00	0.00	34.60	4.02
444	445	4.500499	AGATTGGGATCAGAAAGGTCAG	57.500	45.455	0.00	0.00	34.60	3.51
445	446	3.201708	AGATTGGGATCAGAAAGGTCAGG	59.798	47.826	0.00	0.00	34.60	3.86
446	447	1.289160	TGGGATCAGAAAGGTCAGGG	58.711	55.000	0.00	0.00	0.00	4.45
447	448	1.290134	GGGATCAGAAAGGTCAGGGT	58.710	55.000	0.00	0.00	0.00	4.34
448	449	2.225779	TGGGATCAGAAAGGTCAGGGTA	60.226	50.000	0.00	0.00	0.00	3.69
449	450	2.170817	GGGATCAGAAAGGTCAGGGTAC	59.829	54.545	0.00	0.00	0.00	3.34
450	451	2.838202	GGATCAGAAAGGTCAGGGTACA	59.162	50.000	0.00	0.00	0.00	2.90
451	452	3.118592	GGATCAGAAAGGTCAGGGTACAG	60.119	52.174	0.00	0.00	0.00	2.74
452	453	3.254093	TCAGAAAGGTCAGGGTACAGA	57.746	47.619	0.00	0.00	0.00	3.41
453	454	2.897969	TCAGAAAGGTCAGGGTACAGAC	59.102	50.000	0.00	0.00	34.81	3.51
457	458	3.376082	GGTCAGGGTACAGACCTCA	57.624	57.895	18.70	0.00	46.80	3.86
458	459	1.187087	GGTCAGGGTACAGACCTCAG	58.813	60.000	18.70	0.00	46.80	3.35
459	460	1.272536	GGTCAGGGTACAGACCTCAGA	60.273	57.143	18.70	0.07	46.80	3.27
460	461	2.096248	GTCAGGGTACAGACCTCAGAG	58.904	57.143	0.00	0.00	46.09	3.35
461	462	1.993301	TCAGGGTACAGACCTCAGAGA	59.007	52.381	0.00	0.00	46.09	3.10
462	463	2.583101	TCAGGGTACAGACCTCAGAGAT	59.417	50.000	0.00	0.00	46.09	2.75
463	464	3.011821	TCAGGGTACAGACCTCAGAGATT	59.988	47.826	0.00	0.00	46.09	2.40
464	465	3.772025	CAGGGTACAGACCTCAGAGATTT	59.228	47.826	0.00	0.00	46.09	2.17
465	466	3.772025	AGGGTACAGACCTCAGAGATTTG	59.228	47.826	0.00	0.00	46.09	2.32
466	467	3.118592	GGGTACAGACCTCAGAGATTTGG	60.119	52.174	0.00	0.00	46.09	3.28
467	468	3.769844	GGTACAGACCTCAGAGATTTGGA	59.230	47.826	0.00	0.00	43.16	3.53
468	469	4.142049	GGTACAGACCTCAGAGATTTGGAG	60.142	50.000	0.00	0.00	43.16	3.86
473	474	3.540314	CCTCAGAGATTTGGAGGTGAG	57.460	52.381	0.00	0.00	42.60	3.51
474	475	2.170187	CCTCAGAGATTTGGAGGTGAGG	59.830	54.545	0.00	1.94	43.78	3.86
475	476	3.102972	CTCAGAGATTTGGAGGTGAGGA	58.897	50.000	0.00	0.00	0.00	3.71
476	477	3.710677	CTCAGAGATTTGGAGGTGAGGAT	59.289	47.826	0.00	0.00	0.00	3.24
477	478	4.107072	TCAGAGATTTGGAGGTGAGGATT	58.893	43.478	0.00	0.00	0.00	3.01
478	479	4.537688	TCAGAGATTTGGAGGTGAGGATTT	59.462	41.667	0.00	0.00	0.00	2.17
479	480	5.726308	TCAGAGATTTGGAGGTGAGGATTTA	59.274	40.000	0.00	0.00	0.00	1.40
480	481	6.388100	TCAGAGATTTGGAGGTGAGGATTTAT	59.612	38.462	0.00	0.00	0.00	1.40
481	482	7.059156	CAGAGATTTGGAGGTGAGGATTTATT	58.941	38.462	0.00	0.00	0.00	1.40
482	483	7.559170	CAGAGATTTGGAGGTGAGGATTTATTT	59.441	37.037	0.00	0.00	0.00	1.40
483	484	7.559170	AGAGATTTGGAGGTGAGGATTTATTTG	59.441	37.037	0.00	0.00	0.00	2.32
484	485	7.184862	AGATTTGGAGGTGAGGATTTATTTGT	58.815	34.615	0.00	0.00	0.00	2.83
485	486	6.588719	TTTGGAGGTGAGGATTTATTTGTG	57.411	37.500	0.00	0.00	0.00	3.33
486	487	5.255397	TGGAGGTGAGGATTTATTTGTGT	57.745	39.130	0.00	0.00	0.00	3.72
487	488	5.253330	TGGAGGTGAGGATTTATTTGTGTC	58.747	41.667	0.00	0.00	0.00	3.67
488	489	4.640647	GGAGGTGAGGATTTATTTGTGTCC	59.359	45.833	0.00	0.00	0.00	4.02
489	490	4.261801	AGGTGAGGATTTATTTGTGTCCG	58.738	43.478	0.00	0.00	35.89	4.79
490	491	3.377172	GGTGAGGATTTATTTGTGTCCGG	59.623	47.826	0.00	0.00	35.89	5.14
491	492	3.013921	TGAGGATTTATTTGTGTCCGGC	58.986	45.455	0.00	0.00	35.89	6.13
492	493	3.279434	GAGGATTTATTTGTGTCCGGCT	58.721	45.455	0.00	0.00	35.89	5.52
493	494	3.279434	AGGATTTATTTGTGTCCGGCTC	58.721	45.455	0.00	0.00	35.89	4.70
508	509	1.271840	GGCTCTACCCATGTGGACCA	61.272	60.000	0.00	0.00	37.39	4.02
527	528	7.010552	GTGGACCACATATATGAAAGCGATATC	59.989	40.741	20.14	0.00	34.08	1.63
539	540	7.624360	TGAAAGCGATATCTGGTGTAAATTT	57.376	32.000	0.34	0.00	0.00	1.82
550	551	3.826157	TGGTGTAAATTTCTTGCCTCCAG	59.174	43.478	0.00	0.00	0.00	3.86
554	555	5.183140	GTGTAAATTTCTTGCCTCCAGCTTA	59.817	40.000	0.00	0.00	44.23	3.09
558	563	4.307032	TTTCTTGCCTCCAGCTTATCTT	57.693	40.909	0.00	0.00	44.23	2.40
559	564	3.550437	TCTTGCCTCCAGCTTATCTTC	57.450	47.619	0.00	0.00	44.23	2.87
572	577	3.549794	CTTATCTTCCTCTGGGGCAAAG	58.450	50.000	0.00	0.00	34.39	2.77
573	578	1.376649	ATCTTCCTCTGGGGCAAAGT	58.623	50.000	0.00	0.00	34.39	2.66
574	579	2.038863	TCTTCCTCTGGGGCAAAGTA	57.961	50.000	0.00	0.00	34.39	2.24
576	581	0.328258	TTCCTCTGGGGCAAAGTAGC	59.672	55.000	0.00	0.00	34.39	3.58
684	705	3.134792	ACACGCGTGCCAACCAAA	61.135	55.556	37.35	0.00	0.00	3.28
709	730	2.881352	CGAAGAAGACCGAGCCGC	60.881	66.667	0.00	0.00	0.00	6.53
710	731	2.509561	GAAGAAGACCGAGCCGCC	60.510	66.667	0.00	0.00	0.00	6.13
711	732	4.436998	AAGAAGACCGAGCCGCCG	62.437	66.667	0.00	0.00	0.00	6.46
796	825	0.735632	CCAGCGCAACTCTCAGTCTC	60.736	60.000	11.47	0.00	0.00	3.36
798	827	1.803519	GCGCAACTCTCAGTCTCCG	60.804	63.158	0.30	0.00	0.00	4.63
799	828	1.153939	CGCAACTCTCAGTCTCCGG	60.154	63.158	0.00	0.00	0.00	5.14
827	857	1.542915	CAGATCAGGCCAGTGGTTTTG	59.457	52.381	11.74	7.16	0.00	2.44
866	899	5.384063	ACTACTCAAGATCACACACTGAG	57.616	43.478	0.00	0.00	30.20	3.35
888	921	9.290988	CTGAGAGCAGTATAAGTAGATTCCTAA	57.709	37.037	0.00	0.00	37.37	2.69
938	1076	6.644592	CGTGGTCATAAACAAACAAATGGATT	59.355	34.615	0.00	0.00	0.00	3.01
952	1090	6.355397	CAAATGGATTGTAGCTCAGTACAG	57.645	41.667	0.00	0.00	34.41	2.74
997	1135	3.323775	ACAGGAACCCCACTAAAAGAGA	58.676	45.455	0.00	0.00	33.88	3.10
1151	1297	2.934932	TCCCCATGGCAGAGCACA	60.935	61.111	6.09	0.00	0.00	4.57
1186	1332	3.181482	ACATCTCTGCAAGTAGATCGTGG	60.181	47.826	3.51	0.00	31.46	4.94
1223	1369	2.366916	CTCACCAGACACAACCTTCTCT	59.633	50.000	0.00	0.00	0.00	3.10
1244	1390	2.757099	GGCTTCTACCCGTCCGGA	60.757	66.667	0.00	0.00	37.50	5.14
1248	1394	0.604578	CTTCTACCCGTCCGGAAACA	59.395	55.000	5.23	0.00	37.50	2.83
1283	1429	3.769844	TCTACTTCTCCATCTGGTTCACC	59.230	47.826	0.00	0.00	36.34	4.02
1304	1450	2.280592	GCCACCGACAAGACCGTT	60.281	61.111	0.00	0.00	0.00	4.44
1323	1469	1.218316	GTCTGGACGGCGAATCCTT	59.782	57.895	16.62	0.00	37.13	3.36
1898	2044	0.328258	GTATCACAGGGCAGGGTGTT	59.672	55.000	0.00	0.00	36.43	3.32
2146	2292	2.350522	CAACAAGTCAATCTCCCTCGG	58.649	52.381	0.00	0.00	0.00	4.63
2318	2464	2.369860	TGTCAGTTCAACATCTCCAGCT	59.630	45.455	0.00	0.00	0.00	4.24
3161	3307	3.851098	AGATGTTTACAGCTTCGGAGTC	58.149	45.455	0.00	0.00	40.00	3.36
3211	3357	0.182775	GTTTCCAGTGGGGTGACAGT	59.817	55.000	9.92	0.00	38.11	3.55
3271	3417	1.301677	GCAACAGAAGGCGGAGAAGG	61.302	60.000	0.00	0.00	0.00	3.46
3273	3419	1.842381	AACAGAAGGCGGAGAAGGGG	61.842	60.000	0.00	0.00	0.00	4.79
3299	3445	2.738314	GTTCATGCAATTTGTTCAGGCC	59.262	45.455	0.00	0.00	0.00	5.19
3329	3475	1.153168	GCTCGCTAATGGGGCTGAA	60.153	57.895	0.00	0.00	0.00	3.02
3555	3701	3.933955	CTGAACAAGGCATCAGAAGAGAG	59.066	47.826	0.00	0.00	44.64	3.20
3607	3753	6.986231	TGCAGTGTATACCTTATGTCATGAAG	59.014	38.462	0.00	0.00	0.00	3.02
3639	3785	7.877097	AGATTAGATCCATTCTCCAGATTTTCG	59.123	37.037	0.00	0.00	35.79	3.46
3718	3873	2.911102	GTGCAGCGCAGTATTTTCTTTC	59.089	45.455	11.47	0.00	40.08	2.62
3773	3929	9.586435	GCTATAAATATTTTGATAATGGTGGGC	57.414	33.333	5.91	0.00	0.00	5.36
3991	4147	2.092753	AGTAGCCAGGGAACATGATGTG	60.093	50.000	0.00	0.00	0.00	3.21
4088	4245	6.315393	CGCCAGGTTTATACAAACTGACTTAT	59.685	38.462	11.83	0.00	43.06	1.73
4101	4258	2.623889	CTGACTTATCCCCTGTACCGAG	59.376	54.545	0.00	0.00	0.00	4.63
4207	4365	0.464554	GCTACCAGAGATGGGGCAAC	60.465	60.000	0.00	0.00	33.99	4.17
4209	4367	0.616395	TACCAGAGATGGGGCAACGA	60.616	55.000	0.00	0.00	37.60	3.85
4255	4413	6.874134	AGAATGTTGTAATGTGTGAGACCTAC	59.126	38.462	0.00	0.00	0.00	3.18
4343	4501	7.964604	AATTCTTGACCTAAGTGACTTGTAC	57.035	36.000	8.33	0.00	37.65	2.90
4344	4502	6.726490	TTCTTGACCTAAGTGACTTGTACT	57.274	37.500	8.33	0.00	37.65	2.73
4345	4503	6.328641	TCTTGACCTAAGTGACTTGTACTC	57.671	41.667	8.33	0.00	37.65	2.59
4346	4504	5.243283	TCTTGACCTAAGTGACTTGTACTCC	59.757	44.000	8.33	0.00	37.65	3.85
4347	4505	3.830755	TGACCTAAGTGACTTGTACTCCC	59.169	47.826	8.33	0.00	0.00	4.30
4348	4506	4.087907	GACCTAAGTGACTTGTACTCCCT	58.912	47.826	8.33	0.00	0.00	4.20
4349	4507	4.087907	ACCTAAGTGACTTGTACTCCCTC	58.912	47.826	8.33	0.00	0.00	4.30
4350	4508	4.202695	ACCTAAGTGACTTGTACTCCCTCT	60.203	45.833	8.33	0.00	0.00	3.69
4351	4509	4.158764	CCTAAGTGACTTGTACTCCCTCTG	59.841	50.000	8.33	0.00	0.00	3.35
4352	4510	3.246416	AGTGACTTGTACTCCCTCTGT	57.754	47.619	0.00	0.00	0.00	3.41
4353	4511	4.383931	AGTGACTTGTACTCCCTCTGTA	57.616	45.455	0.00	0.00	0.00	2.74
4354	4512	4.737578	AGTGACTTGTACTCCCTCTGTAA	58.262	43.478	0.00	0.00	0.00	2.41
4355	4513	5.145564	AGTGACTTGTACTCCCTCTGTAAA	58.854	41.667	0.00	0.00	0.00	2.01
4356	4514	5.010820	AGTGACTTGTACTCCCTCTGTAAAC	59.989	44.000	0.00	0.00	0.00	2.01
4357	4515	5.010820	GTGACTTGTACTCCCTCTGTAAACT	59.989	44.000	0.00	0.00	0.00	2.66
4358	4516	6.208204	GTGACTTGTACTCCCTCTGTAAACTA	59.792	42.308	0.00	0.00	0.00	2.24
4359	4517	6.779049	TGACTTGTACTCCCTCTGTAAACTAA	59.221	38.462	0.00	0.00	0.00	2.24
4360	4518	7.453752	TGACTTGTACTCCCTCTGTAAACTAAT	59.546	37.037	0.00	0.00	0.00	1.73
4361	4519	8.890410	ACTTGTACTCCCTCTGTAAACTAATA	57.110	34.615	0.00	0.00	0.00	0.98
4362	4520	9.490083	ACTTGTACTCCCTCTGTAAACTAATAT	57.510	33.333	0.00	0.00	0.00	1.28
4368	4526	9.939424	ACTCCCTCTGTAAACTAATATAAGAGT	57.061	33.333	0.00	0.00	0.00	3.24
4370	4528	9.710818	TCCCTCTGTAAACTAATATAAGAGTGT	57.289	33.333	0.00	0.00	0.00	3.55
4401	4559	6.990546	CACTATTTTAGTGTCCTAAACGCTC	58.009	40.000	6.53	0.00	45.69	5.03
4402	4560	6.812160	CACTATTTTAGTGTCCTAAACGCTCT	59.188	38.462	6.53	0.00	45.69	4.09
4403	4561	7.331193	CACTATTTTAGTGTCCTAAACGCTCTT	59.669	37.037	6.53	0.00	45.69	2.85
4404	4562	8.526147	ACTATTTTAGTGTCCTAAACGCTCTTA	58.474	33.333	0.00	0.00	45.69	2.10
4405	4563	9.530633	CTATTTTAGTGTCCTAAACGCTCTTAT	57.469	33.333	0.00	0.00	45.69	1.73
4408	4566	9.880157	TTTTAGTGTCCTAAACGCTCTTATATT	57.120	29.630	0.00	0.00	45.69	1.28
4409	4567	9.880157	TTTAGTGTCCTAAACGCTCTTATATTT	57.120	29.630	0.00	0.00	45.69	1.40
4410	4568	7.772332	AGTGTCCTAAACGCTCTTATATTTG	57.228	36.000	0.00	0.00	45.69	2.32
4411	4569	7.328737	AGTGTCCTAAACGCTCTTATATTTGT	58.671	34.615	0.00	0.00	45.69	2.83
4412	4570	7.822822	AGTGTCCTAAACGCTCTTATATTTGTT	59.177	33.333	0.00	0.00	45.69	2.83
4413	4571	8.448615	GTGTCCTAAACGCTCTTATATTTGTTT	58.551	33.333	0.00	0.00	35.42	2.83
4414	4572	9.656040	TGTCCTAAACGCTCTTATATTTGTTTA	57.344	29.630	0.00	0.00	32.41	2.01
4415	4573	9.911980	GTCCTAAACGCTCTTATATTTGTTTAC	57.088	33.333	0.00	0.00	32.41	2.01
4416	4574	8.810427	TCCTAAACGCTCTTATATTTGTTTACG	58.190	33.333	0.00	0.00	32.41	3.18
4417	4575	8.060090	CCTAAACGCTCTTATATTTGTTTACGG	58.940	37.037	0.00	0.00	32.41	4.02
4418	4576	7.599630	AAACGCTCTTATATTTGTTTACGGA	57.400	32.000	0.00	0.00	0.00	4.69
4419	4577	6.823678	ACGCTCTTATATTTGTTTACGGAG	57.176	37.500	0.00	0.00	0.00	4.63
4420	4578	5.751990	ACGCTCTTATATTTGTTTACGGAGG	59.248	40.000	0.00	0.00	0.00	4.30
4421	4579	5.176958	CGCTCTTATATTTGTTTACGGAGGG	59.823	44.000	0.00	0.00	0.00	4.30
4422	4580	6.285990	GCTCTTATATTTGTTTACGGAGGGA	58.714	40.000	0.00	0.00	0.00	4.20
4423	4581	6.424207	GCTCTTATATTTGTTTACGGAGGGAG	59.576	42.308	0.00	0.00	0.00	4.30
4424	4582	7.427989	TCTTATATTTGTTTACGGAGGGAGT	57.572	36.000	0.00	0.00	0.00	3.85
4425	4583	7.270047	TCTTATATTTGTTTACGGAGGGAGTG	58.730	38.462	0.00	0.00	0.00	3.51
4738	4903	8.671028	GCAAAATTCAAATTCAGGAGCATTTAT	58.329	29.630	0.00	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	6.658816	TCCTCACTATTGTGTTGTTATGCATT	59.341	34.615	3.54	0.00	44.14	3.56
1	2	6.179756	TCCTCACTATTGTGTTGTTATGCAT	58.820	36.000	3.79	3.79	44.14	3.96
2	3	5.555966	TCCTCACTATTGTGTTGTTATGCA	58.444	37.500	7.18	0.00	44.14	3.96
3	4	6.494893	TTCCTCACTATTGTGTTGTTATGC	57.505	37.500	7.18	0.00	44.14	3.14
8	9	9.295825	TGATTATTTTCCTCACTATTGTGTTGT	57.704	29.630	7.18	0.00	44.14	3.32
9	10	9.778993	CTGATTATTTTCCTCACTATTGTGTTG	57.221	33.333	7.18	2.39	44.14	3.33
10	11	9.739276	TCTGATTATTTTCCTCACTATTGTGTT	57.261	29.630	7.18	0.00	44.14	3.32
11	12	9.739276	TTCTGATTATTTTCCTCACTATTGTGT	57.261	29.630	7.18	0.00	44.14	3.72
13	14	9.401058	CCTTCTGATTATTTTCCTCACTATTGT	57.599	33.333	0.00	0.00	0.00	2.71
14	15	8.348507	GCCTTCTGATTATTTTCCTCACTATTG	58.651	37.037	0.00	0.00	0.00	1.90
15	16	7.503902	GGCCTTCTGATTATTTTCCTCACTATT	59.496	37.037	0.00	0.00	0.00	1.73
16	17	7.001073	GGCCTTCTGATTATTTTCCTCACTAT	58.999	38.462	0.00	0.00	0.00	2.12
17	18	6.357367	GGCCTTCTGATTATTTTCCTCACTA	58.643	40.000	0.00	0.00	0.00	2.74
18	19	5.196695	GGCCTTCTGATTATTTTCCTCACT	58.803	41.667	0.00	0.00	0.00	3.41
19	20	4.339530	GGGCCTTCTGATTATTTTCCTCAC	59.660	45.833	0.84	0.00	0.00	3.51
20	21	4.230502	AGGGCCTTCTGATTATTTTCCTCA	59.769	41.667	0.00	0.00	0.00	3.86
21	22	4.797743	AGGGCCTTCTGATTATTTTCCTC	58.202	43.478	0.00	0.00	0.00	3.71
22	23	4.386873	GGAGGGCCTTCTGATTATTTTCCT	60.387	45.833	15.38	0.00	0.00	3.36
23	24	3.891977	GGAGGGCCTTCTGATTATTTTCC	59.108	47.826	15.38	0.00	0.00	3.13
24	25	4.536765	TGGAGGGCCTTCTGATTATTTTC	58.463	43.478	14.33	0.00	34.31	2.29
25	26	4.608170	TGGAGGGCCTTCTGATTATTTT	57.392	40.909	14.33	0.00	34.31	1.82
26	27	4.821532	ATGGAGGGCCTTCTGATTATTT	57.178	40.909	14.33	0.00	34.31	1.40
27	28	4.821532	AATGGAGGGCCTTCTGATTATT	57.178	40.909	14.33	0.54	34.31	1.40
28	29	4.448347	GGAAATGGAGGGCCTTCTGATTAT	60.448	45.833	14.33	0.00	34.31	1.28
29	30	3.117512	GGAAATGGAGGGCCTTCTGATTA	60.118	47.826	14.33	0.00	34.31	1.75
30	31	2.358615	GGAAATGGAGGGCCTTCTGATT	60.359	50.000	14.33	10.36	34.31	2.57
31	32	1.216427	GGAAATGGAGGGCCTTCTGAT	59.784	52.381	14.33	4.52	34.31	2.90
32	33	0.625849	GGAAATGGAGGGCCTTCTGA	59.374	55.000	14.33	2.08	34.31	3.27
33	34	0.332632	TGGAAATGGAGGGCCTTCTG	59.667	55.000	14.33	0.00	34.31	3.02
34	35	1.084018	TTGGAAATGGAGGGCCTTCT	58.916	50.000	14.33	0.00	34.31	2.85
35	36	1.186200	GTTGGAAATGGAGGGCCTTC	58.814	55.000	7.89	6.03	34.31	3.46
36	37	0.252239	GGTTGGAAATGGAGGGCCTT	60.252	55.000	7.89	0.00	34.31	4.35
37	38	1.388133	GGTTGGAAATGGAGGGCCT	59.612	57.895	5.25	5.25	34.31	5.19
38	39	2.052104	CGGTTGGAAATGGAGGGCC	61.052	63.158	0.00	0.00	0.00	5.80
39	40	1.304134	ACGGTTGGAAATGGAGGGC	60.304	57.895	0.00	0.00	0.00	5.19
40	41	1.595093	GCACGGTTGGAAATGGAGGG	61.595	60.000	0.00	0.00	0.00	4.30
41	42	1.595093	GGCACGGTTGGAAATGGAGG	61.595	60.000	0.00	0.00	0.00	4.30
42	43	1.595093	GGGCACGGTTGGAAATGGAG	61.595	60.000	0.00	0.00	0.00	3.86
43	44	1.605165	GGGCACGGTTGGAAATGGA	60.605	57.895	0.00	0.00	0.00	3.41
44	45	2.969827	GGGCACGGTTGGAAATGG	59.030	61.111	0.00	0.00	0.00	3.16
45	46	2.566010	CGGGCACGGTTGGAAATG	59.434	61.111	0.00	0.00	36.18	2.32
56	57	4.783621	TGCATGAGCTCCGGGCAC	62.784	66.667	16.99	10.73	44.79	5.01
57	58	4.783621	GTGCATGAGCTCCGGGCA	62.784	66.667	16.99	16.99	44.79	5.36
58	59	2.985512	CTAGTGCATGAGCTCCGGGC	62.986	65.000	12.15	12.53	42.74	6.13
59	60	1.068753	CTAGTGCATGAGCTCCGGG	59.931	63.158	12.15	1.35	42.74	5.73
60	61	1.593750	GCTAGTGCATGAGCTCCGG	60.594	63.158	12.15	4.16	42.74	5.14
61	62	1.440893	AGCTAGTGCATGAGCTCCG	59.559	57.895	17.12	3.31	46.08	4.63
65	66	1.722636	GGCCAAGCTAGTGCATGAGC	61.723	60.000	13.43	13.43	39.96	4.26
66	67	0.107312	AGGCCAAGCTAGTGCATGAG	60.107	55.000	5.01	0.00	39.96	2.90
67	68	0.107508	GAGGCCAAGCTAGTGCATGA	60.108	55.000	5.01	0.00	39.96	3.07
68	69	0.393402	TGAGGCCAAGCTAGTGCATG	60.393	55.000	5.01	0.00	42.74	4.06
69	70	0.329261	TTGAGGCCAAGCTAGTGCAT	59.671	50.000	5.01	0.00	42.74	3.96
70	71	0.110295	TTTGAGGCCAAGCTAGTGCA	59.890	50.000	5.01	0.00	42.74	4.57
71	72	0.523519	GTTTGAGGCCAAGCTAGTGC	59.476	55.000	5.01	0.00	40.05	4.40
72	73	1.896220	TGTTTGAGGCCAAGCTAGTG	58.104	50.000	5.01	0.00	35.00	2.74
73	74	2.106511	TCTTGTTTGAGGCCAAGCTAGT	59.893	45.455	5.01	0.00	37.51	2.57
74	75	2.783135	TCTTGTTTGAGGCCAAGCTAG	58.217	47.619	5.01	0.00	38.33	3.42
75	76	2.949177	TCTTGTTTGAGGCCAAGCTA	57.051	45.000	5.01	0.00	38.33	3.32
76	77	1.959282	CTTCTTGTTTGAGGCCAAGCT	59.041	47.619	5.01	0.00	38.33	3.74
77	78	1.956477	TCTTCTTGTTTGAGGCCAAGC	59.044	47.619	5.01	0.00	38.33	4.01
78	79	3.548818	CGTTCTTCTTGTTTGAGGCCAAG	60.549	47.826	5.01	0.00	39.50	3.61
79	80	2.357637	CGTTCTTCTTGTTTGAGGCCAA	59.642	45.455	5.01	0.00	0.00	4.52
80	81	1.946768	CGTTCTTCTTGTTTGAGGCCA	59.053	47.619	5.01	0.00	0.00	5.36
81	82	1.947456	ACGTTCTTCTTGTTTGAGGCC	59.053	47.619	0.00	0.00	0.00	5.19
82	83	2.348591	CGACGTTCTTCTTGTTTGAGGC	60.349	50.000	0.00	0.00	0.00	4.70
83	84	2.348591	GCGACGTTCTTCTTGTTTGAGG	60.349	50.000	0.00	0.00	0.00	3.86
84	85	2.540101	AGCGACGTTCTTCTTGTTTGAG	59.460	45.455	0.00	0.00	0.00	3.02
85	86	2.546778	AGCGACGTTCTTCTTGTTTGA	58.453	42.857	0.00	0.00	0.00	2.69
86	87	4.647291	ATAGCGACGTTCTTCTTGTTTG	57.353	40.909	0.00	0.00	0.00	2.93
87	88	8.540492	CAATATATAGCGACGTTCTTCTTGTTT	58.460	33.333	0.00	0.00	0.00	2.83
88	89	7.169308	CCAATATATAGCGACGTTCTTCTTGTT	59.831	37.037	0.00	0.00	0.00	2.83
89	90	6.641314	CCAATATATAGCGACGTTCTTCTTGT	59.359	38.462	0.00	0.00	0.00	3.16
90	91	6.400091	GCCAATATATAGCGACGTTCTTCTTG	60.400	42.308	0.00	0.00	0.00	3.02
91	92	5.634020	GCCAATATATAGCGACGTTCTTCTT	59.366	40.000	0.00	0.00	0.00	2.52
92	93	5.047943	AGCCAATATATAGCGACGTTCTTCT	60.048	40.000	0.00	0.00	0.00	2.85
93	94	5.061064	CAGCCAATATATAGCGACGTTCTTC	59.939	44.000	0.00	0.00	0.00	2.87
94	95	4.923871	CAGCCAATATATAGCGACGTTCTT	59.076	41.667	0.00	0.00	0.00	2.52
95	96	4.486090	CAGCCAATATATAGCGACGTTCT	58.514	43.478	0.00	0.00	0.00	3.01
96	97	3.060895	GCAGCCAATATATAGCGACGTTC	59.939	47.826	0.00	0.00	0.00	3.95
97	98	2.993899	GCAGCCAATATATAGCGACGTT	59.006	45.455	0.00	0.00	0.00	3.99
98	99	2.607187	GCAGCCAATATATAGCGACGT	58.393	47.619	0.00	0.00	0.00	4.34
99	100	1.927174	GGCAGCCAATATATAGCGACG	59.073	52.381	6.55	0.00	0.00	5.12
100	101	2.972625	TGGCAGCCAATATATAGCGAC	58.027	47.619	13.33	1.90	0.00	5.19
101	102	3.694043	TTGGCAGCCAATATATAGCGA	57.306	42.857	23.88	0.00	38.75	4.93
102	103	3.753272	AGTTTGGCAGCCAATATATAGCG	59.247	43.478	27.89	0.00	43.55	4.26
103	104	5.006386	AGAGTTTGGCAGCCAATATATAGC	58.994	41.667	27.89	7.51	43.55	2.97
104	105	5.413833	CCAGAGTTTGGCAGCCAATATATAG	59.586	44.000	27.89	15.20	43.55	1.31
105	106	5.316167	CCAGAGTTTGGCAGCCAATATATA	58.684	41.667	27.89	9.69	43.55	0.86
106	107	4.147321	CCAGAGTTTGGCAGCCAATATAT	58.853	43.478	27.89	13.54	43.55	0.86
107	108	3.554934	CCAGAGTTTGGCAGCCAATATA	58.445	45.455	27.89	10.51	43.55	0.86
108	109	2.381911	CCAGAGTTTGGCAGCCAATAT	58.618	47.619	27.89	18.63	43.55	1.28
109	110	1.616725	CCCAGAGTTTGGCAGCCAATA	60.617	52.381	27.89	15.32	46.32	1.90
110	111	0.901580	CCCAGAGTTTGGCAGCCAAT	60.902	55.000	27.89	14.19	46.32	3.16
111	112	1.531365	CCCAGAGTTTGGCAGCCAA	60.531	57.895	23.88	23.88	46.32	4.52
112	113	2.115910	CCCAGAGTTTGGCAGCCA	59.884	61.111	11.22	11.22	46.32	4.75
113	114	1.973812	GACCCAGAGTTTGGCAGCC	60.974	63.158	3.66	3.66	46.32	4.85
114	115	0.324943	TAGACCCAGAGTTTGGCAGC	59.675	55.000	0.00	0.00	46.32	5.25
115	116	3.012518	CAATAGACCCAGAGTTTGGCAG	58.987	50.000	0.00	0.00	46.32	4.85
116	117	2.375174	ACAATAGACCCAGAGTTTGGCA	59.625	45.455	0.00	0.00	46.32	4.92
117	118	3.010420	GACAATAGACCCAGAGTTTGGC	58.990	50.000	0.00	0.00	46.32	4.52
119	120	3.926616	ACGACAATAGACCCAGAGTTTG	58.073	45.455	0.00	0.00	0.00	2.93
120	121	3.367087	CGACGACAATAGACCCAGAGTTT	60.367	47.826	0.00	0.00	0.00	2.66
121	122	2.163815	CGACGACAATAGACCCAGAGTT	59.836	50.000	0.00	0.00	0.00	3.01
122	123	1.743958	CGACGACAATAGACCCAGAGT	59.256	52.381	0.00	0.00	0.00	3.24
123	124	1.743958	ACGACGACAATAGACCCAGAG	59.256	52.381	0.00	0.00	0.00	3.35
124	125	1.830279	ACGACGACAATAGACCCAGA	58.170	50.000	0.00	0.00	0.00	3.86
125	126	2.538333	CGTACGACGACAATAGACCCAG	60.538	54.545	10.44	0.00	46.05	4.45
126	127	1.398041	CGTACGACGACAATAGACCCA	59.602	52.381	10.44	0.00	46.05	4.51
127	128	1.398390	ACGTACGACGACAATAGACCC	59.602	52.381	24.41	0.00	46.05	4.46
128	129	2.813779	ACGTACGACGACAATAGACC	57.186	50.000	24.41	0.00	46.05	3.85
129	130	2.842485	CCAACGTACGACGACAATAGAC	59.158	50.000	24.41	0.00	46.05	2.59
130	131	2.728846	GCCAACGTACGACGACAATAGA	60.729	50.000	24.41	0.00	46.05	1.98
131	132	1.580704	GCCAACGTACGACGACAATAG	59.419	52.381	24.41	1.00	46.05	1.73
132	133	1.199789	AGCCAACGTACGACGACAATA	59.800	47.619	24.41	0.00	46.05	1.90
133	134	0.038892	AGCCAACGTACGACGACAAT	60.039	50.000	24.41	0.00	46.05	2.71
134	135	0.935831	CAGCCAACGTACGACGACAA	60.936	55.000	24.41	0.00	46.05	3.18
135	136	1.370778	CAGCCAACGTACGACGACA	60.371	57.895	24.41	0.00	46.05	4.35
136	137	2.713894	GCAGCCAACGTACGACGAC	61.714	63.158	24.41	8.59	46.05	4.34
137	138	2.429571	GCAGCCAACGTACGACGA	60.430	61.111	24.41	0.00	46.05	4.20
139	140	1.693083	GATGGCAGCCAACGTACGAC	61.693	60.000	24.41	8.21	36.95	4.34
140	141	1.447140	GATGGCAGCCAACGTACGA	60.447	57.895	24.41	0.00	36.95	3.43
141	142	1.019278	AAGATGGCAGCCAACGTACG	61.019	55.000	20.84	15.01	36.95	3.67
142	143	0.447801	CAAGATGGCAGCCAACGTAC	59.552	55.000	20.84	7.95	36.95	3.67
143	144	0.036164	ACAAGATGGCAGCCAACGTA	59.964	50.000	20.84	0.00	36.95	3.57
144	145	1.228245	ACAAGATGGCAGCCAACGT	60.228	52.632	20.84	11.88	36.95	3.99
145	146	1.210931	CACAAGATGGCAGCCAACG	59.789	57.895	20.84	9.68	36.95	4.10
146	147	0.675633	AACACAAGATGGCAGCCAAC	59.324	50.000	20.84	17.08	36.95	3.77
147	148	1.885887	GTAACACAAGATGGCAGCCAA	59.114	47.619	20.84	1.43	36.95	4.52
148	149	1.073763	AGTAACACAAGATGGCAGCCA	59.926	47.619	18.99	18.99	38.19	4.75
149	150	1.740025	GAGTAACACAAGATGGCAGCC	59.260	52.381	3.66	3.66	0.00	4.85
150	151	2.675348	GAGAGTAACACAAGATGGCAGC	59.325	50.000	0.00	0.00	0.00	5.25
151	152	3.055530	AGGAGAGTAACACAAGATGGCAG	60.056	47.826	0.00	0.00	0.00	4.85
152	153	2.906389	AGGAGAGTAACACAAGATGGCA	59.094	45.455	0.00	0.00	0.00	4.92
153	154	3.196685	AGAGGAGAGTAACACAAGATGGC	59.803	47.826	0.00	0.00	0.00	4.40
154	155	4.753233	CAGAGGAGAGTAACACAAGATGG	58.247	47.826	0.00	0.00	0.00	3.51
155	156	4.081752	AGCAGAGGAGAGTAACACAAGATG	60.082	45.833	0.00	0.00	0.00	2.90
156	157	4.093011	AGCAGAGGAGAGTAACACAAGAT	58.907	43.478	0.00	0.00	0.00	2.40
157	158	3.501349	AGCAGAGGAGAGTAACACAAGA	58.499	45.455	0.00	0.00	0.00	3.02
158	159	3.256879	TGAGCAGAGGAGAGTAACACAAG	59.743	47.826	0.00	0.00	0.00	3.16
159	160	3.230976	TGAGCAGAGGAGAGTAACACAA	58.769	45.455	0.00	0.00	0.00	3.33
160	161	2.876581	TGAGCAGAGGAGAGTAACACA	58.123	47.619	0.00	0.00	0.00	3.72
161	162	3.843999	CTTGAGCAGAGGAGAGTAACAC	58.156	50.000	0.00	0.00	0.00	3.32
162	163	2.232452	GCTTGAGCAGAGGAGAGTAACA	59.768	50.000	0.00	0.00	41.59	2.41
163	164	2.495669	AGCTTGAGCAGAGGAGAGTAAC	59.504	50.000	5.70	0.00	45.16	2.50
164	165	2.757868	GAGCTTGAGCAGAGGAGAGTAA	59.242	50.000	5.70	0.00	45.16	2.24
165	166	2.374184	GAGCTTGAGCAGAGGAGAGTA	58.626	52.381	5.70	0.00	45.16	2.59
166	167	1.185315	GAGCTTGAGCAGAGGAGAGT	58.815	55.000	5.70	0.00	45.16	3.24
167	168	0.101040	CGAGCTTGAGCAGAGGAGAG	59.899	60.000	5.70	0.00	45.16	3.20
168	169	1.318886	CCGAGCTTGAGCAGAGGAGA	61.319	60.000	1.22	0.00	45.16	3.71
169	170	1.141449	CCGAGCTTGAGCAGAGGAG	59.859	63.158	1.22	0.00	45.16	3.69
170	171	3.011635	GCCGAGCTTGAGCAGAGGA	62.012	63.158	1.22	0.00	45.16	3.71
171	172	2.511145	GCCGAGCTTGAGCAGAGG	60.511	66.667	1.22	6.43	45.16	3.69
172	173	2.884685	CGCCGAGCTTGAGCAGAG	60.885	66.667	1.22	0.00	45.16	3.35
197	198	2.719979	CCAGCAGATGCCATTCGC	59.280	61.111	0.14	0.00	43.38	4.70
198	199	2.191513	CCCCAGCAGATGCCATTCG	61.192	63.158	0.14	0.00	43.38	3.34
199	200	1.076485	ACCCCAGCAGATGCCATTC	60.076	57.895	0.14	0.00	43.38	2.67
200	201	1.380785	CACCCCAGCAGATGCCATT	60.381	57.895	0.14	0.00	43.38	3.16
201	202	1.281199	TACACCCCAGCAGATGCCAT	61.281	55.000	0.14	0.00	43.38	4.40
202	203	1.496444	TTACACCCCAGCAGATGCCA	61.496	55.000	0.14	0.00	43.38	4.92
203	204	0.749454	CTTACACCCCAGCAGATGCC	60.749	60.000	0.14	0.00	43.38	4.40
204	205	0.035056	ACTTACACCCCAGCAGATGC	60.035	55.000	0.00	0.00	42.49	3.91
205	206	1.742761	CACTTACACCCCAGCAGATG	58.257	55.000	0.00	0.00	0.00	2.90
206	207	0.035056	GCACTTACACCCCAGCAGAT	60.035	55.000	0.00	0.00	0.00	2.90
207	208	1.374947	GCACTTACACCCCAGCAGA	59.625	57.895	0.00	0.00	0.00	4.26
208	209	2.034879	CGCACTTACACCCCAGCAG	61.035	63.158	0.00	0.00	0.00	4.24
209	210	2.031919	CGCACTTACACCCCAGCA	59.968	61.111	0.00	0.00	0.00	4.41
210	211	2.746277	CCGCACTTACACCCCAGC	60.746	66.667	0.00	0.00	0.00	4.85
211	212	2.046314	CCCGCACTTACACCCCAG	60.046	66.667	0.00	0.00	0.00	4.45
212	213	3.642503	CCCCGCACTTACACCCCA	61.643	66.667	0.00	0.00	0.00	4.96
215	216	3.853698	TTGGCCCCGCACTTACACC	62.854	63.158	0.00	0.00	0.00	4.16
216	217	1.677633	ATTGGCCCCGCACTTACAC	60.678	57.895	0.00	0.00	0.00	2.90
217	218	1.677300	CATTGGCCCCGCACTTACA	60.677	57.895	0.00	0.00	0.00	2.41
218	219	3.063743	GCATTGGCCCCGCACTTAC	62.064	63.158	0.00	0.00	0.00	2.34
219	220	2.753849	GCATTGGCCCCGCACTTA	60.754	61.111	0.00	0.00	0.00	2.24
220	221	4.992740	TGCATTGGCCCCGCACTT	62.993	61.111	0.00	0.00	40.13	3.16
226	227	3.145551	CTCTGCTGCATTGGCCCC	61.146	66.667	1.31	0.00	40.13	5.80
227	228	2.044650	TCTCTGCTGCATTGGCCC	60.045	61.111	1.31	0.00	40.13	5.80
228	229	2.413142	GGTCTCTGCTGCATTGGCC	61.413	63.158	1.31	6.34	40.13	5.36
229	230	2.758089	CGGTCTCTGCTGCATTGGC	61.758	63.158	1.31	0.00	41.68	4.52
230	231	2.110967	CCGGTCTCTGCTGCATTGG	61.111	63.158	1.31	0.00	0.00	3.16
231	232	2.110967	CCCGGTCTCTGCTGCATTG	61.111	63.158	1.31	0.00	0.00	2.82
232	233	1.841302	TTCCCGGTCTCTGCTGCATT	61.841	55.000	1.31	0.00	0.00	3.56
233	234	2.249413	CTTCCCGGTCTCTGCTGCAT	62.249	60.000	1.31	0.00	0.00	3.96
234	235	2.922503	TTCCCGGTCTCTGCTGCA	60.923	61.111	0.88	0.88	0.00	4.41
235	236	2.125350	CTTCCCGGTCTCTGCTGC	60.125	66.667	0.00	0.00	0.00	5.25
236	237	1.984570	TCCTTCCCGGTCTCTGCTG	60.985	63.158	0.00	0.00	0.00	4.41
237	238	1.985116	GTCCTTCCCGGTCTCTGCT	60.985	63.158	0.00	0.00	0.00	4.24
238	239	2.283529	TGTCCTTCCCGGTCTCTGC	61.284	63.158	0.00	0.00	0.00	4.26
239	240	1.592223	GTGTCCTTCCCGGTCTCTG	59.408	63.158	0.00	0.00	0.00	3.35
240	241	1.977544	CGTGTCCTTCCCGGTCTCT	60.978	63.158	0.00	0.00	0.00	3.10
241	242	2.572284	CGTGTCCTTCCCGGTCTC	59.428	66.667	0.00	0.00	0.00	3.36
242	243	2.995574	CCGTGTCCTTCCCGGTCT	60.996	66.667	0.00	0.00	37.00	3.85
243	244	4.754667	GCCGTGTCCTTCCCGGTC	62.755	72.222	0.00	0.00	43.56	4.79
248	249	3.998672	TCGTGGCCGTGTCCTTCC	61.999	66.667	0.00	0.00	35.01	3.46
249	250	2.737376	GTCGTGGCCGTGTCCTTC	60.737	66.667	0.00	0.00	35.01	3.46
250	251	4.657824	CGTCGTGGCCGTGTCCTT	62.658	66.667	0.00	0.00	35.01	3.36
293	294	3.245315	GTACCTACGCGCGCACTG	61.245	66.667	32.58	17.75	0.00	3.66
294	295	4.824166	CGTACCTACGCGCGCACT	62.824	66.667	32.58	17.87	43.14	4.40
303	304	1.607628	ACATGAGGATCGCGTACCTAC	59.392	52.381	21.78	16.42	38.61	3.18
304	305	1.607148	CACATGAGGATCGCGTACCTA	59.393	52.381	21.78	13.17	38.61	3.08
305	306	0.385751	CACATGAGGATCGCGTACCT	59.614	55.000	21.87	21.87	38.61	3.08
306	307	1.215655	GCACATGAGGATCGCGTACC	61.216	60.000	5.77	11.17	38.61	3.34
307	308	1.540607	CGCACATGAGGATCGCGTAC	61.541	60.000	5.77	0.82	40.99	3.67
308	309	1.299089	CGCACATGAGGATCGCGTA	60.299	57.895	5.77	0.00	40.99	4.42
309	310	2.583319	CGCACATGAGGATCGCGT	60.583	61.111	5.77	0.00	40.99	6.01
311	312	1.811266	ACACGCACATGAGGATCGC	60.811	57.895	0.00	0.00	38.61	4.58
312	313	2.001357	CACACGCACATGAGGATCG	58.999	57.895	0.00	0.00	38.61	3.69
313	314	1.020861	TGCACACGCACATGAGGATC	61.021	55.000	0.00	0.00	45.36	3.36
314	315	1.003476	TGCACACGCACATGAGGAT	60.003	52.632	0.00	0.00	45.36	3.24
315	316	2.425161	TGCACACGCACATGAGGA	59.575	55.556	0.00	0.00	45.36	3.71
325	326	1.270110	TGTACGCGTACTTGCACACG	61.270	55.000	39.69	9.66	41.04	4.49
326	327	0.160182	GTGTACGCGTACTTGCACAC	59.840	55.000	39.69	30.46	35.51	3.82
327	328	0.248949	TGTGTACGCGTACTTGCACA	60.249	50.000	39.69	32.98	38.11	4.57
328	329	1.065358	ATGTGTACGCGTACTTGCAC	58.935	50.000	39.69	31.20	37.00	4.57
329	330	2.252747	GTATGTGTACGCGTACTTGCA	58.747	47.619	39.69	33.60	37.00	4.08
330	331	1.251002	CGTATGTGTACGCGTACTTGC	59.749	52.381	39.69	30.30	46.03	4.01
340	341	5.481200	TTCTCTCACTAGCGTATGTGTAC	57.519	43.478	0.00	0.00	35.82	2.90
341	342	4.035324	GCTTCTCTCACTAGCGTATGTGTA	59.965	45.833	0.00	0.00	35.82	2.90
342	343	3.181495	GCTTCTCTCACTAGCGTATGTGT	60.181	47.826	0.00	0.00	35.82	3.72
343	344	3.367607	GCTTCTCTCACTAGCGTATGTG	58.632	50.000	0.00	0.00	35.68	3.21
344	345	3.701532	GCTTCTCTCACTAGCGTATGT	57.298	47.619	0.00	0.00	0.00	2.29
350	351	2.031157	GGATCTCGCTTCTCTCACTAGC	60.031	54.545	0.00	0.00	0.00	3.42
351	352	3.250762	CAGGATCTCGCTTCTCTCACTAG	59.749	52.174	0.00	0.00	0.00	2.57
352	353	3.210227	CAGGATCTCGCTTCTCTCACTA	58.790	50.000	0.00	0.00	0.00	2.74
353	354	2.023673	CAGGATCTCGCTTCTCTCACT	58.976	52.381	0.00	0.00	0.00	3.41
354	355	1.066908	CCAGGATCTCGCTTCTCTCAC	59.933	57.143	0.00	0.00	0.00	3.51
355	356	1.397672	CCAGGATCTCGCTTCTCTCA	58.602	55.000	0.00	0.00	0.00	3.27
356	357	0.031994	GCCAGGATCTCGCTTCTCTC	59.968	60.000	0.00	0.00	0.00	3.20
357	358	1.398958	GGCCAGGATCTCGCTTCTCT	61.399	60.000	0.00	0.00	0.00	3.10
358	359	1.068921	GGCCAGGATCTCGCTTCTC	59.931	63.158	0.00	0.00	0.00	2.87
359	360	1.684386	CTGGCCAGGATCTCGCTTCT	61.684	60.000	26.14	0.00	0.00	2.85
360	361	1.227497	CTGGCCAGGATCTCGCTTC	60.227	63.158	26.14	0.00	0.00	3.86
361	362	2.906458	CTGGCCAGGATCTCGCTT	59.094	61.111	26.14	0.00	0.00	4.68
371	372	0.465287	AAAAGCACAAACCTGGCCAG	59.535	50.000	26.87	26.87	0.00	4.85
372	373	0.463620	GAAAAGCACAAACCTGGCCA	59.536	50.000	4.71	4.71	0.00	5.36
373	374	0.249868	GGAAAAGCACAAACCTGGCC	60.250	55.000	0.00	0.00	0.00	5.36
374	375	0.249868	GGGAAAAGCACAAACCTGGC	60.250	55.000	0.00	0.00	0.00	4.85
375	376	0.031994	CGGGAAAAGCACAAACCTGG	59.968	55.000	0.00	0.00	0.00	4.45
376	377	0.031994	CCGGGAAAAGCACAAACCTG	59.968	55.000	0.00	0.00	0.00	4.00
377	378	0.396556	ACCGGGAAAAGCACAAACCT	60.397	50.000	6.32	0.00	0.00	3.50
378	379	0.249280	CACCGGGAAAAGCACAAACC	60.249	55.000	6.32	0.00	0.00	3.27
379	380	0.458260	ACACCGGGAAAAGCACAAAC	59.542	50.000	6.32	0.00	0.00	2.93
380	381	1.677052	GTACACCGGGAAAAGCACAAA	59.323	47.619	6.32	0.00	0.00	2.83
381	382	1.310904	GTACACCGGGAAAAGCACAA	58.689	50.000	6.32	0.00	0.00	3.33
382	383	0.535553	GGTACACCGGGAAAAGCACA	60.536	55.000	6.32	0.00	0.00	4.57
383	384	0.535553	TGGTACACCGGGAAAAGCAC	60.536	55.000	6.32	0.00	39.43	4.40
384	385	0.183014	TTGGTACACCGGGAAAAGCA	59.817	50.000	6.32	0.77	39.29	3.91
385	386	1.001048	GTTTGGTACACCGGGAAAAGC	60.001	52.381	6.32	0.00	39.29	3.51
386	387	1.264826	CGTTTGGTACACCGGGAAAAG	59.735	52.381	6.32	0.00	39.29	2.27
387	388	1.307097	CGTTTGGTACACCGGGAAAA	58.693	50.000	6.32	0.00	39.29	2.29
388	389	0.179936	ACGTTTGGTACACCGGGAAA	59.820	50.000	6.32	0.00	39.29	3.13
389	390	1.043816	TACGTTTGGTACACCGGGAA	58.956	50.000	6.32	0.00	39.29	3.97
390	391	1.265236	ATACGTTTGGTACACCGGGA	58.735	50.000	6.32	0.00	39.29	5.14
391	392	2.097680	AATACGTTTGGTACACCGGG	57.902	50.000	6.32	0.00	39.29	5.73
392	393	3.618150	CCTAAATACGTTTGGTACACCGG	59.382	47.826	0.00	0.00	39.29	5.28
393	394	3.618150	CCCTAAATACGTTTGGTACACCG	59.382	47.826	0.00	0.00	39.29	4.94
394	395	4.578871	ACCCTAAATACGTTTGGTACACC	58.421	43.478	0.00	0.00	39.29	4.16
395	396	5.163963	CGAACCCTAAATACGTTTGGTACAC	60.164	44.000	0.00	0.00	39.29	2.90
396	397	4.928615	CGAACCCTAAATACGTTTGGTACA	59.071	41.667	0.00	0.00	32.95	2.90
397	398	4.329801	CCGAACCCTAAATACGTTTGGTAC	59.670	45.833	0.00	0.00	36.62	3.34
398	399	4.221703	TCCGAACCCTAAATACGTTTGGTA	59.778	41.667	0.00	0.00	40.54	3.25
399	400	3.007831	TCCGAACCCTAAATACGTTTGGT	59.992	43.478	0.00	0.00	40.54	3.67
400	401	3.598299	TCCGAACCCTAAATACGTTTGG	58.402	45.455	0.00	0.00	40.89	3.28
401	402	6.275335	TCTATCCGAACCCTAAATACGTTTG	58.725	40.000	0.00	0.00	0.00	2.93
402	403	6.469782	TCTATCCGAACCCTAAATACGTTT	57.530	37.500	0.00	0.00	0.00	3.60
403	404	6.661304	ATCTATCCGAACCCTAAATACGTT	57.339	37.500	0.00	0.00	0.00	3.99
404	405	6.453092	CAATCTATCCGAACCCTAAATACGT	58.547	40.000	0.00	0.00	0.00	3.57
405	406	5.867716	CCAATCTATCCGAACCCTAAATACG	59.132	44.000	0.00	0.00	0.00	3.06
406	407	6.013984	TCCCAATCTATCCGAACCCTAAATAC	60.014	42.308	0.00	0.00	0.00	1.89
407	408	6.086095	TCCCAATCTATCCGAACCCTAAATA	58.914	40.000	0.00	0.00	0.00	1.40
408	409	4.911522	TCCCAATCTATCCGAACCCTAAAT	59.088	41.667	0.00	0.00	0.00	1.40
409	410	4.300345	TCCCAATCTATCCGAACCCTAAA	58.700	43.478	0.00	0.00	0.00	1.85
410	411	3.931317	TCCCAATCTATCCGAACCCTAA	58.069	45.455	0.00	0.00	0.00	2.69
411	412	3.623466	TCCCAATCTATCCGAACCCTA	57.377	47.619	0.00	0.00	0.00	3.53
412	413	2.489528	TCCCAATCTATCCGAACCCT	57.510	50.000	0.00	0.00	0.00	4.34
413	414	2.637872	TGATCCCAATCTATCCGAACCC	59.362	50.000	0.00	0.00	32.75	4.11
414	415	3.578716	TCTGATCCCAATCTATCCGAACC	59.421	47.826	0.00	0.00	32.75	3.62
415	416	4.873746	TCTGATCCCAATCTATCCGAAC	57.126	45.455	0.00	0.00	32.75	3.95
416	417	5.221722	CCTTTCTGATCCCAATCTATCCGAA	60.222	44.000	0.00	0.00	32.75	4.30
417	418	4.284490	CCTTTCTGATCCCAATCTATCCGA	59.716	45.833	0.00	0.00	32.75	4.55
418	419	4.040952	ACCTTTCTGATCCCAATCTATCCG	59.959	45.833	0.00	0.00	32.75	4.18
419	420	5.072329	TGACCTTTCTGATCCCAATCTATCC	59.928	44.000	0.00	0.00	32.75	2.59
420	421	6.179906	TGACCTTTCTGATCCCAATCTATC	57.820	41.667	0.00	0.00	32.75	2.08
421	422	5.072872	CCTGACCTTTCTGATCCCAATCTAT	59.927	44.000	0.00	0.00	32.75	1.98
422	423	4.410228	CCTGACCTTTCTGATCCCAATCTA	59.590	45.833	0.00	0.00	32.75	1.98
423	424	3.201708	CCTGACCTTTCTGATCCCAATCT	59.798	47.826	0.00	0.00	32.75	2.40
424	425	3.549794	CCTGACCTTTCTGATCCCAATC	58.450	50.000	0.00	0.00	0.00	2.67
425	426	2.243221	CCCTGACCTTTCTGATCCCAAT	59.757	50.000	0.00	0.00	0.00	3.16
426	427	1.635487	CCCTGACCTTTCTGATCCCAA	59.365	52.381	0.00	0.00	0.00	4.12
427	428	1.289160	CCCTGACCTTTCTGATCCCA	58.711	55.000	0.00	0.00	0.00	4.37
428	429	1.290134	ACCCTGACCTTTCTGATCCC	58.710	55.000	0.00	0.00	0.00	3.85
429	430	2.838202	TGTACCCTGACCTTTCTGATCC	59.162	50.000	0.00	0.00	0.00	3.36
430	431	3.769844	TCTGTACCCTGACCTTTCTGATC	59.230	47.826	0.00	0.00	0.00	2.92
431	432	3.515901	GTCTGTACCCTGACCTTTCTGAT	59.484	47.826	0.00	0.00	34.46	2.90
432	433	2.897969	GTCTGTACCCTGACCTTTCTGA	59.102	50.000	0.00	0.00	34.46	3.27
433	434	3.320673	GTCTGTACCCTGACCTTTCTG	57.679	52.381	0.00	0.00	34.46	3.02
446	447	4.142049	CCTCCAAATCTCTGAGGTCTGTAC	60.142	50.000	4.59	0.00	40.66	2.90
447	448	4.026744	CCTCCAAATCTCTGAGGTCTGTA	58.973	47.826	4.59	0.00	40.66	2.74
448	449	2.836981	CCTCCAAATCTCTGAGGTCTGT	59.163	50.000	4.59	0.00	40.66	3.41
449	450	3.540314	CCTCCAAATCTCTGAGGTCTG	57.460	52.381	4.59	0.00	40.66	3.51
454	455	3.102972	TCCTCACCTCCAAATCTCTGAG	58.897	50.000	0.00	0.00	0.00	3.35
455	456	3.190383	TCCTCACCTCCAAATCTCTGA	57.810	47.619	0.00	0.00	0.00	3.27
456	457	4.500499	AATCCTCACCTCCAAATCTCTG	57.500	45.455	0.00	0.00	0.00	3.35
457	458	6.838401	ATAAATCCTCACCTCCAAATCTCT	57.162	37.500	0.00	0.00	0.00	3.10
458	459	7.340487	ACAAATAAATCCTCACCTCCAAATCTC	59.660	37.037	0.00	0.00	0.00	2.75
459	460	7.123247	CACAAATAAATCCTCACCTCCAAATCT	59.877	37.037	0.00	0.00	0.00	2.40
460	461	7.093771	ACACAAATAAATCCTCACCTCCAAATC	60.094	37.037	0.00	0.00	0.00	2.17
461	462	6.725834	ACACAAATAAATCCTCACCTCCAAAT	59.274	34.615	0.00	0.00	0.00	2.32
462	463	6.074648	ACACAAATAAATCCTCACCTCCAAA	58.925	36.000	0.00	0.00	0.00	3.28
463	464	5.640147	ACACAAATAAATCCTCACCTCCAA	58.360	37.500	0.00	0.00	0.00	3.53
464	465	5.253330	GACACAAATAAATCCTCACCTCCA	58.747	41.667	0.00	0.00	0.00	3.86
465	466	4.640647	GGACACAAATAAATCCTCACCTCC	59.359	45.833	0.00	0.00	0.00	4.30
466	467	4.332819	CGGACACAAATAAATCCTCACCTC	59.667	45.833	0.00	0.00	0.00	3.85
467	468	4.261801	CGGACACAAATAAATCCTCACCT	58.738	43.478	0.00	0.00	0.00	4.00
468	469	3.377172	CCGGACACAAATAAATCCTCACC	59.623	47.826	0.00	0.00	0.00	4.02
469	470	3.181500	GCCGGACACAAATAAATCCTCAC	60.181	47.826	5.05	0.00	0.00	3.51
470	471	3.013921	GCCGGACACAAATAAATCCTCA	58.986	45.455	5.05	0.00	0.00	3.86
471	472	3.279434	AGCCGGACACAAATAAATCCTC	58.721	45.455	5.05	0.00	0.00	3.71
472	473	3.054361	AGAGCCGGACACAAATAAATCCT	60.054	43.478	5.05	0.00	0.00	3.24
473	474	3.279434	AGAGCCGGACACAAATAAATCC	58.721	45.455	5.05	0.00	0.00	3.01
474	475	4.272748	GGTAGAGCCGGACACAAATAAATC	59.727	45.833	5.05	0.00	0.00	2.17
475	476	4.196971	GGTAGAGCCGGACACAAATAAAT	58.803	43.478	5.05	0.00	0.00	1.40
476	477	3.602483	GGTAGAGCCGGACACAAATAAA	58.398	45.455	5.05	0.00	0.00	1.40
477	478	2.093341	GGGTAGAGCCGGACACAAATAA	60.093	50.000	5.05	0.00	38.44	1.40
478	479	1.483415	GGGTAGAGCCGGACACAAATA	59.517	52.381	5.05	0.00	38.44	1.40
479	480	0.252197	GGGTAGAGCCGGACACAAAT	59.748	55.000	5.05	0.00	38.44	2.32
480	481	1.122632	TGGGTAGAGCCGGACACAAA	61.123	55.000	5.05	0.00	38.44	2.83
481	482	0.907704	ATGGGTAGAGCCGGACACAA	60.908	55.000	5.05	0.00	38.44	3.33
482	483	1.305802	ATGGGTAGAGCCGGACACA	60.306	57.895	5.05	0.59	38.44	3.72
483	484	1.144057	CATGGGTAGAGCCGGACAC	59.856	63.158	5.05	0.00	38.44	3.67
484	485	1.305802	ACATGGGTAGAGCCGGACA	60.306	57.895	5.05	0.00	38.44	4.02
485	486	1.144057	CACATGGGTAGAGCCGGAC	59.856	63.158	5.05	0.00	38.44	4.79
486	487	2.063979	CCACATGGGTAGAGCCGGA	61.064	63.158	5.05	0.00	38.44	5.14
487	488	2.063979	TCCACATGGGTAGAGCCGG	61.064	63.158	0.00	0.00	38.44	6.13
488	489	1.144057	GTCCACATGGGTAGAGCCG	59.856	63.158	0.00	0.00	38.44	5.52
489	490	1.271840	TGGTCCACATGGGTAGAGCC	61.272	60.000	0.00	0.00	33.09	4.70
490	491	0.107654	GTGGTCCACATGGGTAGAGC	60.108	60.000	17.59	0.00	38.11	4.09
491	492	1.275666	TGTGGTCCACATGGGTAGAG	58.724	55.000	21.21	0.00	39.62	2.43
492	493	3.485214	TGTGGTCCACATGGGTAGA	57.515	52.632	21.21	0.00	39.62	2.59
508	509	7.615403	ACACCAGATATCGCTTTCATATATGT	58.385	34.615	12.42	0.00	0.00	2.29
514	515	7.807977	AATTTACACCAGATATCGCTTTCAT	57.192	32.000	0.00	0.00	0.00	2.57
515	516	7.552687	AGAAATTTACACCAGATATCGCTTTCA	59.447	33.333	0.00	0.00	0.00	2.69
527	528	3.826157	TGGAGGCAAGAAATTTACACCAG	59.174	43.478	0.00	0.00	0.00	4.00
539	540	2.171448	GGAAGATAAGCTGGAGGCAAGA	59.829	50.000	0.00	0.00	44.79	3.02
550	551	0.839946	TGCCCCAGAGGAAGATAAGC	59.160	55.000	0.00	0.00	38.24	3.09
554	555	1.376649	ACTTTGCCCCAGAGGAAGAT	58.623	50.000	0.00	0.00	38.24	2.40
558	563	1.562672	GGCTACTTTGCCCCAGAGGA	61.563	60.000	0.00	0.00	46.82	3.71
559	564	1.077429	GGCTACTTTGCCCCAGAGG	60.077	63.158	0.00	0.00	46.82	3.69
576	581	3.803082	CGTGTCGCCAATGCAGGG	61.803	66.667	2.86	2.86	37.32	4.45
684	705	3.683340	GCTCGGTCTTCTTCGGTATTTTT	59.317	43.478	0.00	0.00	0.00	1.94
796	825	0.176680	CCTGATCTGGACAAGACCGG	59.823	60.000	13.18	0.00	37.88	5.28
798	827	0.107459	GGCCTGATCTGGACAAGACC	60.107	60.000	21.91	8.64	37.88	3.85
799	828	0.615331	TGGCCTGATCTGGACAAGAC	59.385	55.000	23.95	4.10	43.18	3.01
827	857	5.243283	TGAGTAGTAACTTTCTCTGACCCAC	59.757	44.000	0.00	0.00	35.56	4.61
866	899	8.566260	TCGTTTAGGAATCTACTTATACTGCTC	58.434	37.037	0.00	0.00	0.00	4.26
876	909	4.201930	CGTCTGCTCGTTTAGGAATCTACT	60.202	45.833	0.00	0.00	0.00	2.57
888	921	0.734253	GATGAGTGCGTCTGCTCGTT	60.734	55.000	0.00	0.00	43.34	3.85
938	1076	5.262009	ACCAGTATTCTGTACTGAGCTACA	58.738	41.667	14.88	0.00	45.69	2.74
952	1090	3.130516	TGTCCATCTCGTGACCAGTATTC	59.869	47.826	0.00	0.00	0.00	1.75
1151	1297	3.276857	CAGAGATGTGCCTGTGCTTATT	58.723	45.455	0.00	0.00	38.71	1.40
1186	1332	0.603569	TGAGACGAGCAGGACTTTCC	59.396	55.000	0.00	0.00	36.58	3.13
1214	1360	0.398318	AGAAGCCGCAAGAGAAGGTT	59.602	50.000	0.00	0.00	43.02	3.50
1244	1390	0.751643	AGAAGGCGTTGGTGCTGTTT	60.752	50.000	0.00	0.00	34.52	2.83
1248	1394	0.396811	AAGTAGAAGGCGTTGGTGCT	59.603	50.000	0.00	0.00	34.52	4.40
1283	1429	3.041940	GTCTTGTCGGTGGCGTGG	61.042	66.667	0.00	0.00	0.00	4.94
1304	1450	1.541310	AAGGATTCGCCGTCCAGACA	61.541	55.000	0.00	0.00	43.43	3.41
1898	2044	3.056588	TGCACATAACACATCTGCTGA	57.943	42.857	0.00	0.00	0.00	4.26
2146	2292	0.248784	GCAAATCCGCCTGCATTCTC	60.249	55.000	0.00	0.00	38.48	2.87
2318	2464	3.721575	AGGTAATACCAGGATGATTGGCA	59.278	43.478	12.54	0.00	41.95	4.92
2483	2629	4.825422	TGTTGTGCATTTTGAAAAGGACA	58.175	34.783	6.49	8.13	36.43	4.02
3161	3307	3.856521	CAGTGACAATCTCTAGAAGCACG	59.143	47.826	0.00	0.00	0.00	5.34
3211	3357	2.950781	AGCCCATCTCATCTTCGTCTA	58.049	47.619	0.00	0.00	0.00	2.59
3271	3417	0.983467	AAATTGCATGAACCCCACCC	59.017	50.000	0.00	0.00	0.00	4.61
3273	3419	2.837532	ACAAATTGCATGAACCCCAC	57.162	45.000	0.00	0.00	0.00	4.61
3299	3445	1.629013	TAGCGAGCATCTGTTTCACG	58.371	50.000	0.00	0.00	0.00	4.35
3329	3475	5.714333	CAGTCTAGCATCCACTATATCCAGT	59.286	44.000	0.00	0.00	0.00	4.00
3491	3637	6.070881	TGGTAAAATGCCATCAAAAGTATGCT	60.071	34.615	0.00	0.00	0.00	3.79
3607	3753	6.595682	TGGAGAATGGATCTAATCTTTCCAC	58.404	40.000	0.00	0.00	42.09	4.02
3754	3910	7.673641	TTTGAGCCCACCATTATCAAAATAT	57.326	32.000	0.00	0.00	37.04	1.28
3756	3912	6.564557	ATTTGAGCCCACCATTATCAAAAT	57.435	33.333	3.13	0.00	41.62	1.82
3770	3926	2.686915	CTCACTGATCCAATTTGAGCCC	59.313	50.000	0.00	0.00	0.00	5.19
3773	3929	6.564709	TCAAACTCACTGATCCAATTTGAG	57.435	37.500	0.00	0.54	39.72	3.02
4088	4245	2.363795	CAGGCTCGGTACAGGGGA	60.364	66.667	0.00	0.00	0.00	4.81
4101	4258	7.436673	GCATAGTGTTATATATAGAGTGCAGGC	59.563	40.741	0.00	0.00	0.00	4.85
4207	4365	4.869861	TCACACATACCTTCATGACATTCG	59.130	41.667	0.00	0.00	0.00	3.34
4209	4367	6.053632	TCTCACACATACCTTCATGACATT	57.946	37.500	0.00	0.00	0.00	2.71
4255	4413	7.007367	CCGAAAATGACACATAATTCAAGAACG	59.993	37.037	0.00	0.00	0.00	3.95
4344	4502	9.710818	ACACTCTTATATTAGTTTACAGAGGGA	57.289	33.333	2.59	0.00	34.50	4.20
4383	4541	9.880157	AAATATAAGAGCGTTTAGGACACTAAA	57.120	29.630	0.00	0.00	44.62	1.85
4384	4542	9.309516	CAAATATAAGAGCGTTTAGGACACTAA	57.690	33.333	0.00	0.00	37.40	2.24
4385	4543	8.472413	ACAAATATAAGAGCGTTTAGGACACTA	58.528	33.333	0.00	0.00	0.00	2.74
4386	4544	7.328737	ACAAATATAAGAGCGTTTAGGACACT	58.671	34.615	0.00	0.00	0.00	3.55
4387	4545	7.535489	ACAAATATAAGAGCGTTTAGGACAC	57.465	36.000	0.00	0.00	0.00	3.67
4388	4546	8.556213	AAACAAATATAAGAGCGTTTAGGACA	57.444	30.769	0.00	0.00	0.00	4.02
4389	4547	9.911980	GTAAACAAATATAAGAGCGTTTAGGAC	57.088	33.333	0.00	0.00	31.53	3.85
4390	4548	8.810427	CGTAAACAAATATAAGAGCGTTTAGGA	58.190	33.333	0.00	0.00	37.09	2.94
4391	4549	8.060090	CCGTAAACAAATATAAGAGCGTTTAGG	58.940	37.037	0.00	0.00	35.81	2.69
4392	4550	8.810427	TCCGTAAACAAATATAAGAGCGTTTAG	58.190	33.333	0.00	0.00	31.53	1.85
4393	4551	8.700722	TCCGTAAACAAATATAAGAGCGTTTA	57.299	30.769	0.00	0.00	0.00	2.01
4394	4552	7.201582	CCTCCGTAAACAAATATAAGAGCGTTT	60.202	37.037	0.00	0.00	0.00	3.60
4395	4553	6.257193	CCTCCGTAAACAAATATAAGAGCGTT	59.743	38.462	0.00	0.00	0.00	4.84
4396	4554	5.751990	CCTCCGTAAACAAATATAAGAGCGT	59.248	40.000	0.00	0.00	0.00	5.07
4397	4555	5.176958	CCCTCCGTAAACAAATATAAGAGCG	59.823	44.000	0.00	0.00	0.00	5.03
4398	4556	6.285990	TCCCTCCGTAAACAAATATAAGAGC	58.714	40.000	0.00	0.00	0.00	4.09
4399	4557	7.438459	CACTCCCTCCGTAAACAAATATAAGAG	59.562	40.741	0.00	0.00	0.00	2.85
4400	4558	7.270047	CACTCCCTCCGTAAACAAATATAAGA	58.730	38.462	0.00	0.00	0.00	2.10
4401	4559	6.018180	GCACTCCCTCCGTAAACAAATATAAG	60.018	42.308	0.00	0.00	0.00	1.73
4402	4560	5.818857	GCACTCCCTCCGTAAACAAATATAA	59.181	40.000	0.00	0.00	0.00	0.98
4403	4561	5.362263	GCACTCCCTCCGTAAACAAATATA	58.638	41.667	0.00	0.00	0.00	0.86
4404	4562	4.196971	GCACTCCCTCCGTAAACAAATAT	58.803	43.478	0.00	0.00	0.00	1.28
4405	4563	3.602483	GCACTCCCTCCGTAAACAAATA	58.398	45.455	0.00	0.00	0.00	1.40
4406	4564	2.433436	GCACTCCCTCCGTAAACAAAT	58.567	47.619	0.00	0.00	0.00	2.32
4407	4565	1.543871	GGCACTCCCTCCGTAAACAAA	60.544	52.381	0.00	0.00	0.00	2.83
4408	4566	0.035739	GGCACTCCCTCCGTAAACAA	59.964	55.000	0.00	0.00	0.00	2.83
4409	4567	1.122632	TGGCACTCCCTCCGTAAACA	61.123	55.000	0.00	0.00	0.00	2.83
4410	4568	0.252197	ATGGCACTCCCTCCGTAAAC	59.748	55.000	0.00	0.00	0.00	2.01
4411	4569	1.868713	TATGGCACTCCCTCCGTAAA	58.131	50.000	0.00	0.00	0.00	2.01
4412	4570	2.097110	ATATGGCACTCCCTCCGTAA	57.903	50.000	0.00	0.00	0.00	3.18
4413	4571	2.097110	AATATGGCACTCCCTCCGTA	57.903	50.000	0.00	0.00	0.00	4.02
4414	4572	1.213296	AAATATGGCACTCCCTCCGT	58.787	50.000	0.00	0.00	0.00	4.69
4415	4573	1.949525	CAAAATATGGCACTCCCTCCG	59.050	52.381	0.00	0.00	0.00	4.63
4416	4574	3.297134	TCAAAATATGGCACTCCCTCC	57.703	47.619	0.00	0.00	0.00	4.30
4417	4575	3.571401	CCATCAAAATATGGCACTCCCTC	59.429	47.826	0.00	0.00	40.07	4.30
4418	4576	3.569491	CCATCAAAATATGGCACTCCCT	58.431	45.455	0.00	0.00	40.07	4.20
4497	4658	6.458210	CAAGGGCATTGTTCACTTTTAGAAT	58.542	36.000	3.26	0.00	33.95	2.40
4576	4737	3.244009	TGCTCCCGAATTTGAATTTTGCA	60.244	39.130	0.00	0.00	0.00	4.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.