Multiple sequence alignment - TraesCS3D01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G244200 chr3D 100.000 5379 0 0 1 5379 339302499 339307877 0.000000e+00 9934.0
1 TraesCS3D01G244200 chr3D 96.224 662 24 1 1 662 311637064 311636404 0.000000e+00 1083.0
2 TraesCS3D01G244200 chr3D 76.716 335 77 1 4984 5317 104391172 104390838 9.200000e-43 185.0
3 TraesCS3D01G244200 chr3D 83.562 73 12 0 1499 1571 170659625 170659697 9.670000e-08 69.4
4 TraesCS3D01G244200 chr3D 85.938 64 9 0 3936 3999 600820254 600820191 9.670000e-08 69.4
5 TraesCS3D01G244200 chr3B 91.700 1241 54 26 656 1871 437908766 437909982 0.000000e+00 1676.0
6 TraesCS3D01G244200 chr3B 95.024 824 26 6 3579 4389 437913846 437914667 0.000000e+00 1280.0
7 TraesCS3D01G244200 chr3B 87.254 863 85 15 4527 5369 437914858 437915715 0.000000e+00 961.0
8 TraesCS3D01G244200 chr3B 88.259 494 30 11 2874 3360 437911503 437911975 2.810000e-157 566.0
9 TraesCS3D01G244200 chr3B 89.531 277 15 7 2173 2435 437910360 437910636 6.670000e-89 339.0
10 TraesCS3D01G244200 chr3B 90.455 220 9 2 1958 2177 437910124 437910331 4.100000e-71 279.0
11 TraesCS3D01G244200 chr3B 90.000 150 5 3 3356 3495 437913679 437913828 9.200000e-43 185.0
12 TraesCS3D01G244200 chr3B 98.936 94 0 1 2431 2523 437910793 437910886 3.330000e-37 167.0
13 TraesCS3D01G244200 chr3B 92.308 117 2 3 4414 4523 437914655 437914771 5.580000e-35 159.0
14 TraesCS3D01G244200 chr3B 90.179 112 4 1 3356 3460 437913297 437913408 7.260000e-29 139.0
15 TraesCS3D01G244200 chr3B 88.889 54 6 0 1521 1574 245964014 245963961 3.480000e-07 67.6
16 TraesCS3D01G244200 chr4D 97.447 666 15 2 1 665 449856441 449857105 0.000000e+00 1134.0
17 TraesCS3D01G244200 chr2D 96.828 662 16 1 1 662 43345347 43344691 0.000000e+00 1101.0
18 TraesCS3D01G244200 chr5D 96.131 672 19 1 1 665 503075420 503074749 0.000000e+00 1090.0
19 TraesCS3D01G244200 chr5D 83.495 103 17 0 1474 1576 393801823 393801721 4.430000e-16 97.1
20 TraesCS3D01G244200 chr5A 95.556 675 27 2 1 672 640396306 640395632 0.000000e+00 1077.0
21 TraesCS3D01G244200 chr5A 95.665 669 24 4 1 665 631638550 631637883 0.000000e+00 1070.0
22 TraesCS3D01G244200 chr5A 95.652 667 24 2 1 662 264075363 264074697 0.000000e+00 1066.0
23 TraesCS3D01G244200 chr6A 95.796 666 26 2 1 665 615301176 615300512 0.000000e+00 1074.0
24 TraesCS3D01G244200 chr6A 95.000 40 2 0 3960 3999 24049445 24049484 4.500000e-06 63.9
25 TraesCS3D01G244200 chr6A 92.500 40 3 0 3959 3998 23951603 23951564 2.090000e-04 58.4
26 TraesCS3D01G244200 chr1A 95.665 669 27 2 1 667 551668366 551667698 0.000000e+00 1074.0
27 TraesCS3D01G244200 chr5B 84.615 104 14 2 1474 1576 473638675 473638573 9.530000e-18 102.0
28 TraesCS3D01G244200 chr7B 85.106 94 12 2 1499 1591 216679687 216679595 1.590000e-15 95.3
29 TraesCS3D01G244200 chr7B 85.075 67 6 4 3922 3986 504440102 504440166 1.250000e-06 65.8
30 TraesCS3D01G244200 chr7B 85.075 67 6 4 3922 3986 504456767 504456831 1.250000e-06 65.8
31 TraesCS3D01G244200 chr7D 84.946 93 12 2 1499 1590 241097506 241097415 5.740000e-15 93.5
32 TraesCS3D01G244200 chr7A 85.393 89 11 2 1499 1586 257358445 257358532 2.060000e-14 91.6
33 TraesCS3D01G244200 chr7A 80.000 95 15 4 3894 3986 516514347 516514255 3.480000e-07 67.6
34 TraesCS3D01G244200 chr3A 89.062 64 7 0 3936 3999 730656234 730656171 4.470000e-11 80.5
35 TraesCS3D01G244200 chr3A 83.562 73 12 0 1499 1571 208222074 208222146 9.670000e-08 69.4
36 TraesCS3D01G244200 chr6D 92.500 40 3 0 3959 3998 25826833 25826794 2.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G244200 chr3D 339302499 339307877 5378 False 9934.0 9934 100.0000 1 5379 1 chr3D.!!$F2 5378
1 TraesCS3D01G244200 chr3D 311636404 311637064 660 True 1083.0 1083 96.2240 1 662 1 chr3D.!!$R2 661
2 TraesCS3D01G244200 chr3B 437908766 437915715 6949 False 575.1 1676 91.3646 656 5369 10 chr3B.!!$F1 4713
3 TraesCS3D01G244200 chr4D 449856441 449857105 664 False 1134.0 1134 97.4470 1 665 1 chr4D.!!$F1 664
4 TraesCS3D01G244200 chr2D 43344691 43345347 656 True 1101.0 1101 96.8280 1 662 1 chr2D.!!$R1 661
5 TraesCS3D01G244200 chr5D 503074749 503075420 671 True 1090.0 1090 96.1310 1 665 1 chr5D.!!$R2 664
6 TraesCS3D01G244200 chr5A 640395632 640396306 674 True 1077.0 1077 95.5560 1 672 1 chr5A.!!$R3 671
7 TraesCS3D01G244200 chr5A 631637883 631638550 667 True 1070.0 1070 95.6650 1 665 1 chr5A.!!$R2 664
8 TraesCS3D01G244200 chr5A 264074697 264075363 666 True 1066.0 1066 95.6520 1 662 1 chr5A.!!$R1 661
9 TraesCS3D01G244200 chr6A 615300512 615301176 664 True 1074.0 1074 95.7960 1 665 1 chr6A.!!$R2 664
10 TraesCS3D01G244200 chr1A 551667698 551668366 668 True 1074.0 1074 95.6650 1 667 1 chr1A.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 929 0.391793 CCCTCCTTTCTCCTTCACGC 60.392 60.0 0.00 0.0 0.00 5.34 F
1615 1644 0.033503 CTAAACCCCCTCCCGCAATT 60.034 55.0 0.00 0.0 0.00 2.32 F
1665 1694 0.168128 GTTCGCCCGAAAATCCACAG 59.832 55.0 4.52 0.0 35.75 3.66 F
1885 1927 0.308376 GGGCGCGTCACAAAACTTTA 59.692 50.0 14.93 0.0 0.00 1.85 F
3495 5866 0.401356 TCACAAAGCTCATGAGGGCA 59.599 50.0 23.89 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2444 0.095935 CGCATGCGAAAGAAGAGTGG 59.904 55.000 35.82 0.00 42.83 4.00 R
3455 5826 0.034574 TTTCGCCCATGTAGCATGGT 60.035 50.000 22.09 1.62 37.48 3.55 R
3511 5882 0.403271 ACAACAAGCCCTCATGAGCT 59.597 50.000 17.76 10.47 42.40 4.09 R
3512 5883 1.068055 CAACAACAAGCCCTCATGAGC 60.068 52.381 17.76 8.07 0.00 4.26 R
5185 7676 0.108186 CCTTGTGCATGCGGAGACTA 60.108 55.000 14.09 1.51 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 244 2.884012 CTCAGTATGCGTCAGGAGATCT 59.116 50.000 0.00 0.00 34.76 2.75
337 343 6.033831 GCCGTGTGATGAAATATGAGTTTTTG 59.966 38.462 0.00 0.00 0.00 2.44
524 531 3.020984 GGCCCTTTATTCACCGAAATGA 58.979 45.455 0.00 0.00 0.00 2.57
639 648 1.859998 GCGATTTTTATGCGTCCTGGC 60.860 52.381 0.00 0.00 0.00 4.85
717 735 2.427506 ACAGTTAAGCAGGCTAAGTGC 58.572 47.619 13.42 0.00 41.54 4.40
725 743 0.870393 CAGGCTAAGTGCACTGTGTG 59.130 55.000 22.49 11.78 45.15 3.82
734 752 4.720127 CACTGTGTGCCATAGCCA 57.280 55.556 0.00 0.00 38.69 4.75
735 753 3.179925 CACTGTGTGCCATAGCCAT 57.820 52.632 0.00 0.00 38.69 4.40
737 755 2.642427 CACTGTGTGCCATAGCCATAA 58.358 47.619 0.00 0.00 38.69 1.90
738 756 3.016031 CACTGTGTGCCATAGCCATAAA 58.984 45.455 0.00 0.00 38.69 1.40
739 757 3.065786 CACTGTGTGCCATAGCCATAAAG 59.934 47.826 0.00 0.00 38.69 1.85
740 758 3.054434 ACTGTGTGCCATAGCCATAAAGA 60.054 43.478 0.07 0.00 38.69 2.52
741 759 3.947196 CTGTGTGCCATAGCCATAAAGAA 59.053 43.478 0.00 0.00 38.69 2.52
742 760 4.339748 TGTGTGCCATAGCCATAAAGAAA 58.660 39.130 0.00 0.00 38.69 2.52
743 761 4.769488 TGTGTGCCATAGCCATAAAGAAAA 59.231 37.500 0.00 0.00 38.69 2.29
744 762 5.105797 TGTGTGCCATAGCCATAAAGAAAAG 60.106 40.000 0.00 0.00 38.69 2.27
768 786 3.470645 AAAACTCTGGCGTGTTCTACT 57.529 42.857 0.00 0.00 0.00 2.57
769 787 2.726832 AACTCTGGCGTGTTCTACTC 57.273 50.000 0.00 0.00 0.00 2.59
809 827 1.293498 CGGGTGAGCAGTACAGCTT 59.707 57.895 14.51 0.00 46.75 3.74
880 899 2.107950 TTGTCCGGATTACCTGCAAG 57.892 50.000 7.81 0.00 0.00 4.01
901 921 2.554462 GCAAACAACTCCCTCCTTTCTC 59.446 50.000 0.00 0.00 0.00 2.87
903 923 2.424684 ACAACTCCCTCCTTTCTCCT 57.575 50.000 0.00 0.00 0.00 3.69
908 928 1.205893 CTCCCTCCTTTCTCCTTCACG 59.794 57.143 0.00 0.00 0.00 4.35
909 929 0.391793 CCCTCCTTTCTCCTTCACGC 60.392 60.000 0.00 0.00 0.00 5.34
950 979 3.576550 GGAGATAAGCCAAGCTAGCTACT 59.423 47.826 19.70 13.17 40.49 2.57
1018 1047 1.382522 CATGACAATGGGTTCCTCCG 58.617 55.000 0.00 0.00 37.00 4.63
1037 1066 2.437359 AGGCATCTGCTTCCGCAC 60.437 61.111 1.70 0.00 42.25 5.34
1045 1074 2.032681 GCTTCCGCACCCTTGTCT 59.967 61.111 0.00 0.00 35.78 3.41
1068 1097 4.883300 CTCGTCGCGTACCTCGGC 62.883 72.222 5.77 0.26 40.26 5.54
1276 1305 2.922503 TGCTCCGCCTCTTCCACA 60.923 61.111 0.00 0.00 0.00 4.17
1317 1346 0.591170 GTAAGCAAAGCTCCAACGCA 59.409 50.000 0.00 0.00 38.25 5.24
1318 1347 0.591170 TAAGCAAAGCTCCAACGCAC 59.409 50.000 0.00 0.00 38.25 5.34
1319 1348 1.103398 AAGCAAAGCTCCAACGCACT 61.103 50.000 0.00 0.00 38.25 4.40
1348 1377 3.010624 GCATTTGCATACACACACACA 57.989 42.857 0.00 0.00 41.59 3.72
1349 1378 3.577667 GCATTTGCATACACACACACAT 58.422 40.909 0.00 0.00 41.59 3.21
1350 1379 3.989167 GCATTTGCATACACACACACATT 59.011 39.130 0.00 0.00 41.59 2.71
1351 1380 4.143284 GCATTTGCATACACACACACATTG 60.143 41.667 0.00 0.00 41.59 2.82
1354 1383 1.605500 CATACACACACACATTGCGC 58.394 50.000 0.00 0.00 0.00 6.09
1355 1384 1.069364 CATACACACACACATTGCGCA 60.069 47.619 5.66 5.66 0.00 6.09
1357 1386 0.385029 ACACACACACATTGCGCAAT 59.615 45.000 29.36 29.36 0.00 3.56
1358 1387 1.202394 ACACACACACATTGCGCAATT 60.202 42.857 32.13 20.07 0.00 2.32
1359 1388 1.452773 CACACACACATTGCGCAATTC 59.547 47.619 32.13 0.00 0.00 2.17
1360 1389 1.062258 CACACACATTGCGCAATTCC 58.938 50.000 32.13 0.00 0.00 3.01
1362 1391 0.244450 CACACATTGCGCAATTCCCT 59.756 50.000 32.13 10.41 0.00 4.20
1363 1392 0.527565 ACACATTGCGCAATTCCCTC 59.472 50.000 32.13 0.00 0.00 4.30
1364 1393 0.527113 CACATTGCGCAATTCCCTCA 59.473 50.000 32.13 4.47 0.00 3.86
1365 1394 0.527565 ACATTGCGCAATTCCCTCAC 59.472 50.000 32.13 0.00 0.00 3.51
1366 1395 0.527113 CATTGCGCAATTCCCTCACA 59.473 50.000 32.13 2.73 0.00 3.58
1367 1396 0.527565 ATTGCGCAATTCCCTCACAC 59.472 50.000 29.36 0.00 0.00 3.82
1368 1397 0.821301 TTGCGCAATTCCCTCACACA 60.821 50.000 21.02 0.00 0.00 3.72
1369 1398 0.821301 TGCGCAATTCCCTCACACAA 60.821 50.000 8.16 0.00 0.00 3.33
1370 1399 0.313672 GCGCAATTCCCTCACACAAA 59.686 50.000 0.30 0.00 0.00 2.83
1371 1400 1.067635 GCGCAATTCCCTCACACAAAT 60.068 47.619 0.30 0.00 0.00 2.32
1409 1438 2.027605 CCATACTGATCGCGCCGT 59.972 61.111 0.00 0.00 0.00 5.68
1593 1622 1.334054 GTGCAACTGGTACGTACGAG 58.666 55.000 29.27 29.27 37.93 4.18
1612 1641 3.723922 GCTAAACCCCCTCCCGCA 61.724 66.667 0.00 0.00 0.00 5.69
1615 1644 0.033503 CTAAACCCCCTCCCGCAATT 60.034 55.000 0.00 0.00 0.00 2.32
1627 1656 4.823989 CCTCCCGCAATTATCATCTTCTTT 59.176 41.667 0.00 0.00 0.00 2.52
1650 1679 2.394545 GGAAAAGGTGTTTCCGTTCG 57.605 50.000 2.27 0.00 38.62 3.95
1652 1681 0.382873 AAAAGGTGTTTCCGTTCGCC 59.617 50.000 0.00 0.00 41.99 5.54
1665 1694 0.168128 GTTCGCCCGAAAATCCACAG 59.832 55.000 4.52 0.00 35.75 3.66
1692 1721 4.002906 CTGTGCAAGGACAGTAGGTTTA 57.997 45.455 12.83 0.00 38.88 2.01
1693 1722 4.385825 CTGTGCAAGGACAGTAGGTTTAA 58.614 43.478 12.83 0.00 38.88 1.52
1743 1781 2.262292 CCCGCCATGGCAAAACTG 59.738 61.111 34.93 17.95 42.06 3.16
1768 1806 2.124612 TCGCATGCAGGGACCATG 60.125 61.111 19.57 0.56 42.23 3.66
1769 1807 3.214123 CGCATGCAGGGACCATGG 61.214 66.667 19.57 11.19 40.24 3.66
1788 1830 4.074526 GAGGCGACCTGCTCTGCA 62.075 66.667 2.98 0.00 45.43 4.41
1790 1832 3.123620 GGCGACCTGCTCTGCAAG 61.124 66.667 0.00 0.00 45.43 4.01
1881 1923 2.051345 CAGGGCGCGTCACAAAAC 60.051 61.111 14.93 0.00 0.00 2.43
1882 1924 2.203153 AGGGCGCGTCACAAAACT 60.203 55.556 14.93 0.00 0.00 2.66
1883 1925 1.822186 AGGGCGCGTCACAAAACTT 60.822 52.632 14.93 0.00 0.00 2.66
1884 1926 1.065109 GGGCGCGTCACAAAACTTT 59.935 52.632 14.93 0.00 0.00 2.66
1885 1927 0.308376 GGGCGCGTCACAAAACTTTA 59.692 50.000 14.93 0.00 0.00 1.85
1886 1928 1.662026 GGGCGCGTCACAAAACTTTAG 60.662 52.381 14.93 0.00 0.00 1.85
1887 1929 1.003223 GGCGCGTCACAAAACTTTAGT 60.003 47.619 5.47 0.00 0.00 2.24
1888 1930 2.540157 GGCGCGTCACAAAACTTTAGTT 60.540 45.455 5.47 0.00 40.50 2.24
1909 1951 9.771534 TTAGTTTTAGTTTAGCCAATTTTGCAT 57.228 25.926 0.00 0.00 0.00 3.96
1912 1954 9.805966 GTTTTAGTTTAGCCAATTTTGCATTAC 57.194 29.630 0.00 0.00 0.00 1.89
1914 1956 5.167845 AGTTTAGCCAATTTTGCATTACGG 58.832 37.500 0.00 0.00 0.00 4.02
1920 1962 5.105554 AGCCAATTTTGCATTACGGTTATCA 60.106 36.000 0.00 0.00 0.00 2.15
1922 1964 6.292274 GCCAATTTTGCATTACGGTTATCATG 60.292 38.462 0.00 0.00 0.00 3.07
1951 1993 2.743126 CGTACGGGCAGAATGGTAAAAA 59.257 45.455 7.57 0.00 35.86 1.94
1952 1994 3.375922 CGTACGGGCAGAATGGTAAAAAT 59.624 43.478 7.57 0.00 35.86 1.82
1955 1997 5.986501 ACGGGCAGAATGGTAAAAATAAA 57.013 34.783 0.00 0.00 35.86 1.40
1957 1999 5.105513 ACGGGCAGAATGGTAAAAATAAAGG 60.106 40.000 0.00 0.00 35.86 3.11
1958 2000 5.116180 GGGCAGAATGGTAAAAATAAAGGC 58.884 41.667 0.00 0.00 35.86 4.35
1959 2001 5.104941 GGGCAGAATGGTAAAAATAAAGGCT 60.105 40.000 0.00 0.00 35.86 4.58
1960 2002 5.812127 GGCAGAATGGTAAAAATAAAGGCTG 59.188 40.000 0.00 0.00 35.86 4.85
2008 2127 2.939022 GTGACTGACACGGCTTGC 59.061 61.111 0.00 0.00 39.78 4.01
2009 2128 2.661537 TGACTGACACGGCTTGCG 60.662 61.111 0.00 0.00 0.00 4.85
2010 2129 4.077188 GACTGACACGGCTTGCGC 62.077 66.667 0.00 0.00 0.00 6.09
2011 2130 4.908687 ACTGACACGGCTTGCGCA 62.909 61.111 5.66 5.66 38.10 6.09
2018 2137 4.101790 CGGCTTGCGCACGGAAAT 62.102 61.111 11.12 0.00 38.10 2.17
2060 2179 4.193090 GCGATCTAGCTAGGCAGATAGTA 58.807 47.826 20.58 0.00 40.85 1.82
2068 2187 2.327200 AGGCAGATAGTAAAACGGCC 57.673 50.000 0.00 0.00 43.13 6.13
2084 2203 1.078143 GCCAGCTTGGAGATTCGGT 60.078 57.895 6.40 0.00 40.96 4.69
2120 2239 2.280797 GTCACAGGACGCCAAGCA 60.281 61.111 0.00 0.00 33.68 3.91
2213 2365 0.798776 GTCGTGTTCTTGCTCCATGG 59.201 55.000 4.97 4.97 0.00 3.66
2259 2415 4.020617 TCAAGCGTCCTGGCTGGG 62.021 66.667 10.79 0.45 43.93 4.45
2320 2477 1.377725 CATGCGGGGTGCTCTTTCT 60.378 57.895 0.00 0.00 46.63 2.52
2337 2494 1.561643 TCTGGACCACTCTTGCCTAG 58.438 55.000 0.00 0.00 0.00 3.02
2343 2508 1.078989 ACCACTCTTGCCTAGGTAGGT 59.921 52.381 11.31 6.27 45.42 3.08
2346 2511 2.166664 CACTCTTGCCTAGGTAGGTCAC 59.833 54.545 11.31 0.00 45.42 3.67
2383 2549 3.117794 TGTAGTAAATCATACGGCGCAC 58.882 45.455 10.83 0.00 0.00 5.34
2409 2575 1.134965 AGCTCGTCATCTTTTCCGAGG 60.135 52.381 9.58 0.00 45.12 4.63
2416 2582 3.312697 GTCATCTTTTCCGAGGGTAATGC 59.687 47.826 0.00 0.00 0.00 3.56
2435 2601 7.545265 GGTAATGCATTCTCAAGCAACAATTTA 59.455 33.333 16.86 0.00 44.88 1.40
2438 2604 9.826574 AATGCATTCTCAAGCAACAATTTATAT 57.173 25.926 5.99 0.00 44.88 0.86
2534 2908 4.582701 TCAAAAATTGCAAGACCGATGT 57.417 36.364 4.94 0.00 0.00 3.06
2535 2909 4.297510 TCAAAAATTGCAAGACCGATGTG 58.702 39.130 4.94 0.00 0.00 3.21
2536 2910 4.050553 CAAAAATTGCAAGACCGATGTGT 58.949 39.130 4.94 0.00 0.00 3.72
2537 2911 2.995466 AATTGCAAGACCGATGTGTG 57.005 45.000 4.94 0.00 0.00 3.82
2539 2913 2.535012 TTGCAAGACCGATGTGTGTA 57.465 45.000 0.00 0.00 0.00 2.90
2540 2914 1.790755 TGCAAGACCGATGTGTGTAC 58.209 50.000 0.00 0.00 0.00 2.90
2609 3248 8.761575 AAATGCACATGAAATTACGAAGAAAT 57.238 26.923 0.00 0.00 0.00 2.17
2944 3590 9.950680 CATGTAAGAAAAAGTAGACATGTGTTT 57.049 29.630 1.15 0.00 39.39 2.83
2982 3628 3.442273 AGACACGGCAAAGAAACAAAAGA 59.558 39.130 0.00 0.00 0.00 2.52
2985 3631 4.082463 ACACGGCAAAGAAACAAAAGAAGA 60.082 37.500 0.00 0.00 0.00 2.87
2989 3635 4.869861 GGCAAAGAAACAAAAGAAGAAGCA 59.130 37.500 0.00 0.00 0.00 3.91
3017 3663 3.844804 ACCAAGTAAACCCAAAAACCCAA 59.155 39.130 0.00 0.00 0.00 4.12
3019 3665 4.447290 CAAGTAAACCCAAAAACCCAAGG 58.553 43.478 0.00 0.00 0.00 3.61
3025 3671 3.455849 ACCCAAAAACCCAAGGAAGAAA 58.544 40.909 0.00 0.00 0.00 2.52
3036 3682 3.069586 CCAAGGAAGAAACAGGGAAAACC 59.930 47.826 0.00 0.00 40.67 3.27
3040 3686 4.405680 AGGAAGAAACAGGGAAAACCAAAG 59.594 41.667 0.00 0.00 43.89 2.77
3048 3694 9.602568 GAAACAGGGAAAACCAAAGTATAAAAA 57.397 29.630 0.00 0.00 43.89 1.94
3133 3783 8.958119 AGGAAAAAGAATAACCAAAGAAAACC 57.042 30.769 0.00 0.00 0.00 3.27
3152 3803 7.600752 AGAAAACCGACAGAAAAACAATGAAAA 59.399 29.630 0.00 0.00 0.00 2.29
3153 3804 6.641176 AACCGACAGAAAAACAATGAAAAC 57.359 33.333 0.00 0.00 0.00 2.43
3156 3807 7.193595 ACCGACAGAAAAACAATGAAAACTAG 58.806 34.615 0.00 0.00 0.00 2.57
3216 3869 5.237344 AGAGAAAACCAAACTGAACTGATCG 59.763 40.000 0.00 0.00 0.00 3.69
3277 3930 2.421739 CAGCTAATAGGCCGGCGT 59.578 61.111 26.70 26.70 0.00 5.68
3287 3940 3.259751 GCCGGCGTGTAATCGTCC 61.260 66.667 12.58 0.00 31.35 4.79
3288 3941 2.952783 CCGGCGTGTAATCGTCCG 60.953 66.667 6.01 12.17 43.80 4.79
3289 3942 3.613702 CGGCGTGTAATCGTCCGC 61.614 66.667 0.00 0.00 45.05 5.54
3291 3944 3.259751 GCGTGTAATCGTCCGCCC 61.260 66.667 0.00 0.00 40.25 6.13
3292 3945 2.952783 CGTGTAATCGTCCGCCCG 60.953 66.667 0.00 0.00 0.00 6.13
3293 3946 2.182537 GTGTAATCGTCCGCCCGT 59.817 61.111 0.00 0.00 0.00 5.28
3324 3977 4.917040 TCCTATAAGGAATTGGTATGGGCA 59.083 41.667 0.00 0.00 42.51 5.36
3333 3986 5.376625 GAATTGGTATGGGCAAGACATAGA 58.623 41.667 0.00 0.00 31.92 1.98
3342 3995 1.001268 GCAAGACATAGATCTCGCGGA 60.001 52.381 6.13 2.40 0.00 5.54
3343 3996 2.656085 CAAGACATAGATCTCGCGGAC 58.344 52.381 6.13 0.00 0.00 4.79
3348 4001 1.000827 CATAGATCTCGCGGACTTGCT 60.001 52.381 6.13 0.00 0.00 3.91
3383 5362 3.639162 TTGCAACGTTTCAGCAAGG 57.361 47.368 17.56 0.00 42.71 3.61
3417 5403 7.041780 CCGGATGTGACTTTAAGATTGGATAAG 60.042 40.741 0.00 0.00 0.00 1.73
3455 5826 2.802719 GGTCAGGCCTACCAAAAATGA 58.197 47.619 20.38 4.32 39.06 2.57
3495 5866 0.401356 TCACAAAGCTCATGAGGGCA 59.599 50.000 23.89 0.00 0.00 5.36
3496 5867 1.202915 TCACAAAGCTCATGAGGGCAA 60.203 47.619 23.89 0.00 0.00 4.52
3497 5868 1.201647 CACAAAGCTCATGAGGGCAAG 59.798 52.381 23.89 8.02 0.00 4.01
3498 5869 1.202976 ACAAAGCTCATGAGGGCAAGT 60.203 47.619 23.89 8.59 0.00 3.16
3499 5870 1.471684 CAAAGCTCATGAGGGCAAGTC 59.528 52.381 23.89 5.54 0.00 3.01
3500 5871 0.990374 AAGCTCATGAGGGCAAGTCT 59.010 50.000 23.89 7.82 0.00 3.24
3501 5872 1.871418 AGCTCATGAGGGCAAGTCTA 58.129 50.000 23.89 0.00 0.00 2.59
3502 5873 2.191400 AGCTCATGAGGGCAAGTCTAA 58.809 47.619 23.89 0.00 0.00 2.10
3503 5874 2.573462 AGCTCATGAGGGCAAGTCTAAA 59.427 45.455 23.89 0.00 0.00 1.85
3504 5875 3.009473 AGCTCATGAGGGCAAGTCTAAAA 59.991 43.478 23.89 0.00 0.00 1.52
3505 5876 3.758554 GCTCATGAGGGCAAGTCTAAAAA 59.241 43.478 23.89 0.00 0.00 1.94
3537 5908 3.971245 TGAGGGCTTGTTGTTGTTTTT 57.029 38.095 0.00 0.00 0.00 1.94
3546 5917 6.796552 GGCTTGTTGTTGTTTTTCTCAAAAAG 59.203 34.615 0.00 0.00 40.71 2.27
3559 5930 6.995511 TTCTCAAAAAGAAAACGAAGAGGA 57.004 33.333 0.00 0.00 41.10 3.71
3560 5931 6.604735 TCTCAAAAAGAAAACGAAGAGGAG 57.395 37.500 0.00 0.00 0.00 3.69
3561 5932 6.346096 TCTCAAAAAGAAAACGAAGAGGAGA 58.654 36.000 0.00 0.00 0.00 3.71
3562 5933 6.480320 TCTCAAAAAGAAAACGAAGAGGAGAG 59.520 38.462 0.00 0.00 0.00 3.20
3563 5934 5.007724 TCAAAAAGAAAACGAAGAGGAGAGC 59.992 40.000 0.00 0.00 0.00 4.09
3564 5935 4.344359 AAAGAAAACGAAGAGGAGAGCT 57.656 40.909 0.00 0.00 0.00 4.09
3565 5936 3.586100 AGAAAACGAAGAGGAGAGCTC 57.414 47.619 5.27 5.27 0.00 4.09
3577 5948 2.767505 GGAGAGCTCCGAAAAAGTTCA 58.232 47.619 10.93 0.00 40.36 3.18
3578 5949 3.139077 GGAGAGCTCCGAAAAAGTTCAA 58.861 45.455 10.93 0.00 40.36 2.69
3579 5950 3.564225 GGAGAGCTCCGAAAAAGTTCAAA 59.436 43.478 10.93 0.00 40.36 2.69
3580 5951 4.036380 GGAGAGCTCCGAAAAAGTTCAAAA 59.964 41.667 10.93 0.00 40.36 2.44
3581 5952 5.449999 GGAGAGCTCCGAAAAAGTTCAAAAA 60.450 40.000 10.93 0.00 40.36 1.94
3619 5990 6.753107 AAGGAGAACTTCGAAAAGAACAAA 57.247 33.333 0.00 0.00 32.85 2.83
3621 5992 6.552629 AGGAGAACTTCGAAAAGAACAAAAC 58.447 36.000 0.00 0.00 36.30 2.43
3635 6006 9.803315 AAAAGAACAAAACTAAATGAAGAGGAC 57.197 29.630 0.00 0.00 0.00 3.85
3637 6008 9.847224 AAGAACAAAACTAAATGAAGAGGACTA 57.153 29.630 0.00 0.00 0.00 2.59
3684 6055 9.277565 CGTCCTAAATTACTTGTCATTGATTTG 57.722 33.333 0.00 0.00 0.00 2.32
3695 6066 8.035394 ACTTGTCATTGATTTGTCTAGATACGT 58.965 33.333 0.00 0.00 0.00 3.57
3696 6067 7.755582 TGTCATTGATTTGTCTAGATACGTG 57.244 36.000 0.00 0.00 0.00 4.49
3697 6068 7.543756 TGTCATTGATTTGTCTAGATACGTGA 58.456 34.615 0.00 0.00 0.00 4.35
3698 6069 7.702348 TGTCATTGATTTGTCTAGATACGTGAG 59.298 37.037 0.00 0.00 0.00 3.51
3699 6070 6.697455 TCATTGATTTGTCTAGATACGTGAGC 59.303 38.462 0.00 0.00 0.00 4.26
3701 6072 5.961272 TGATTTGTCTAGATACGTGAGCAA 58.039 37.500 0.00 0.00 0.00 3.91
3702 6073 6.036470 TGATTTGTCTAGATACGTGAGCAAG 58.964 40.000 0.00 0.00 0.00 4.01
3703 6074 4.371855 TTGTCTAGATACGTGAGCAAGG 57.628 45.455 0.00 0.00 0.00 3.61
3708 6089 1.003118 AGATACGTGAGCAAGGCCAAA 59.997 47.619 5.01 0.00 0.00 3.28
3728 6109 6.667370 CCAAAATTGCCTCCACAAATTTAAC 58.333 36.000 0.00 0.00 32.32 2.01
3811 6192 0.112995 ATTTTGTGCAGGCAGGAGGA 59.887 50.000 0.00 0.00 0.00 3.71
4036 6417 4.424566 TACGACTTCCGCGGCACC 62.425 66.667 23.51 8.45 43.32 5.01
4063 6444 2.264794 GACCCGTTCATGGACGCT 59.735 61.111 21.52 7.85 41.50 5.07
4378 6759 3.533606 ATCTGTAGCCAGCACTTGTAG 57.466 47.619 0.00 0.00 38.66 2.74
4379 6760 2.248248 TCTGTAGCCAGCACTTGTAGT 58.752 47.619 0.00 0.00 38.66 2.73
4380 6761 3.427573 TCTGTAGCCAGCACTTGTAGTA 58.572 45.455 0.00 0.00 38.66 1.82
4381 6762 3.830178 TCTGTAGCCAGCACTTGTAGTAA 59.170 43.478 0.00 0.00 38.66 2.24
4382 6763 4.082190 TCTGTAGCCAGCACTTGTAGTAAG 60.082 45.833 0.00 0.00 38.66 2.34
4383 6764 3.576982 TGTAGCCAGCACTTGTAGTAAGT 59.423 43.478 0.00 0.00 0.00 2.24
4384 6765 4.768448 TGTAGCCAGCACTTGTAGTAAGTA 59.232 41.667 0.00 0.00 0.00 2.24
4385 6766 4.457834 AGCCAGCACTTGTAGTAAGTAG 57.542 45.455 0.00 0.00 0.00 2.57
4386 6767 4.087182 AGCCAGCACTTGTAGTAAGTAGA 58.913 43.478 0.00 0.00 0.00 2.59
4387 6768 4.712337 AGCCAGCACTTGTAGTAAGTAGAT 59.288 41.667 0.00 0.00 0.00 1.98
4388 6769 5.187967 AGCCAGCACTTGTAGTAAGTAGATT 59.812 40.000 0.00 0.00 0.00 2.40
4389 6770 5.520649 GCCAGCACTTGTAGTAAGTAGATTC 59.479 44.000 0.00 0.00 0.00 2.52
4390 6771 6.043411 CCAGCACTTGTAGTAAGTAGATTCC 58.957 44.000 0.00 0.00 0.00 3.01
4391 6772 6.043411 CAGCACTTGTAGTAAGTAGATTCCC 58.957 44.000 0.00 0.00 0.00 3.97
4392 6773 5.128991 AGCACTTGTAGTAAGTAGATTCCCC 59.871 44.000 0.00 0.00 0.00 4.81
4393 6774 5.128991 GCACTTGTAGTAAGTAGATTCCCCT 59.871 44.000 0.00 0.00 0.00 4.79
4394 6775 6.683360 GCACTTGTAGTAAGTAGATTCCCCTC 60.683 46.154 0.00 0.00 0.00 4.30
4395 6776 6.380274 CACTTGTAGTAAGTAGATTCCCCTCA 59.620 42.308 0.00 0.00 0.00 3.86
4396 6777 6.958192 ACTTGTAGTAAGTAGATTCCCCTCAA 59.042 38.462 0.00 0.00 0.00 3.02
4397 6778 7.456902 ACTTGTAGTAAGTAGATTCCCCTCAAA 59.543 37.037 0.00 0.00 0.00 2.69
4398 6779 7.801893 TGTAGTAAGTAGATTCCCCTCAAAA 57.198 36.000 0.00 0.00 0.00 2.44
4399 6780 7.848128 TGTAGTAAGTAGATTCCCCTCAAAAG 58.152 38.462 0.00 0.00 0.00 2.27
4400 6781 7.676893 TGTAGTAAGTAGATTCCCCTCAAAAGA 59.323 37.037 0.00 0.00 0.00 2.52
4401 6782 7.569599 AGTAAGTAGATTCCCCTCAAAAGAA 57.430 36.000 0.00 0.00 0.00 2.52
4402 6783 7.985589 AGTAAGTAGATTCCCCTCAAAAGAAA 58.014 34.615 0.00 0.00 0.00 2.52
4403 6784 8.445588 AGTAAGTAGATTCCCCTCAAAAGAAAA 58.554 33.333 0.00 0.00 0.00 2.29
4404 6785 9.074576 GTAAGTAGATTCCCCTCAAAAGAAAAA 57.925 33.333 0.00 0.00 0.00 1.94
4508 6895 4.982241 TGTTCAGAGTTCAGAAGGGATT 57.018 40.909 0.00 0.00 0.00 3.01
4520 6907 4.041691 TCAGAAGGGATTTCGTTTCCTCTT 59.958 41.667 0.00 0.00 40.86 2.85
4523 6910 6.430000 CAGAAGGGATTTCGTTTCCTCTTTTA 59.570 38.462 0.00 0.00 40.86 1.52
4524 6911 7.002276 AGAAGGGATTTCGTTTCCTCTTTTAA 58.998 34.615 0.00 0.00 40.86 1.52
4525 6912 7.504574 AGAAGGGATTTCGTTTCCTCTTTTAAA 59.495 33.333 0.00 0.00 40.86 1.52
4560 7031 2.322081 GCGCGTGCCGGTTTATAC 59.678 61.111 10.56 0.00 37.44 1.47
4577 7048 2.758770 TACAAGCACGCACGTCTCCC 62.759 60.000 0.00 0.00 0.00 4.30
4618 7089 8.778059 ACCTCCTATTTGTTTGATAATGGTAGA 58.222 33.333 0.00 0.00 0.00 2.59
4621 7092 9.627123 TCCTATTTGTTTGATAATGGTAGAAGG 57.373 33.333 0.00 0.00 0.00 3.46
4622 7093 9.627123 CCTATTTGTTTGATAATGGTAGAAGGA 57.373 33.333 0.00 0.00 0.00 3.36
4625 7096 7.786178 TTGTTTGATAATGGTAGAAGGATCG 57.214 36.000 0.00 0.00 0.00 3.69
4626 7097 6.288294 TGTTTGATAATGGTAGAAGGATCGG 58.712 40.000 0.00 0.00 0.00 4.18
4627 7098 6.099125 TGTTTGATAATGGTAGAAGGATCGGA 59.901 38.462 0.00 0.00 0.00 4.55
4628 7099 6.935240 TTGATAATGGTAGAAGGATCGGAT 57.065 37.500 0.00 0.00 0.00 4.18
4629 7100 6.935240 TGATAATGGTAGAAGGATCGGATT 57.065 37.500 0.00 0.00 0.00 3.01
4631 7102 2.910688 TGGTAGAAGGATCGGATTGC 57.089 50.000 0.00 0.00 0.00 3.56
4634 7105 2.103263 GGTAGAAGGATCGGATTGCAGT 59.897 50.000 0.00 0.00 0.00 4.40
4635 7106 2.322355 AGAAGGATCGGATTGCAGTG 57.678 50.000 0.00 0.00 0.00 3.66
4636 7107 1.556911 AGAAGGATCGGATTGCAGTGT 59.443 47.619 0.00 0.00 0.00 3.55
4637 7108 1.936547 GAAGGATCGGATTGCAGTGTC 59.063 52.381 0.00 0.00 0.00 3.67
4638 7109 1.198713 AGGATCGGATTGCAGTGTCT 58.801 50.000 0.00 0.00 0.00 3.41
4640 7111 1.134699 GGATCGGATTGCAGTGTCTGA 60.135 52.381 9.03 9.03 32.44 3.27
4643 7134 1.069978 TCGGATTGCAGTGTCTGAACA 59.930 47.619 0.66 0.00 32.44 3.18
4651 7142 5.070770 TGCAGTGTCTGAACATTTGTTTT 57.929 34.783 0.66 0.00 38.56 2.43
4657 7148 4.869297 TGTCTGAACATTTGTTTTTGCTGG 59.131 37.500 0.00 0.00 38.56 4.85
4671 7162 6.591062 TGTTTTTGCTGGCATTCTTAATGATC 59.409 34.615 3.86 0.00 41.46 2.92
4715 7206 4.906618 TCAAAGAAGAAAATACGAGCCCT 58.093 39.130 0.00 0.00 0.00 5.19
4716 7207 5.313712 TCAAAGAAGAAAATACGAGCCCTT 58.686 37.500 0.00 0.00 0.00 3.95
4755 7246 6.061441 TGTCTTCTTAAAGCATCTCCAACAA 58.939 36.000 0.00 0.00 32.18 2.83
4758 7249 5.947228 TCTTAAAGCATCTCCAACAACAG 57.053 39.130 0.00 0.00 0.00 3.16
4804 7295 8.422577 AACTTTTAGAGTAAAATTGGAGGCAT 57.577 30.769 0.00 0.00 37.72 4.40
4805 7296 8.056407 ACTTTTAGAGTAAAATTGGAGGCATC 57.944 34.615 0.00 0.00 37.07 3.91
4806 7297 7.669722 ACTTTTAGAGTAAAATTGGAGGCATCA 59.330 33.333 0.00 0.00 37.07 3.07
4819 7310 7.961325 TTGGAGGCATCAAAAATTACTTTTC 57.039 32.000 0.00 0.00 34.91 2.29
4821 7312 5.062183 GGAGGCATCAAAAATTACTTTTCGC 59.938 40.000 0.00 0.00 34.91 4.70
4823 7314 4.384547 GGCATCAAAAATTACTTTTCGCGT 59.615 37.500 5.77 0.00 34.91 6.01
4824 7315 5.569823 GGCATCAAAAATTACTTTTCGCGTA 59.430 36.000 5.77 0.00 34.91 4.42
4827 7318 7.479291 GCATCAAAAATTACTTTTCGCGTACTA 59.521 33.333 5.77 0.00 34.91 1.82
4828 7319 9.320406 CATCAAAAATTACTTTTCGCGTACTAA 57.680 29.630 5.77 0.00 34.91 2.24
4892 7383 7.157347 TGGCACTTCAAACATGCAAATAATTA 58.843 30.769 0.00 0.00 41.27 1.40
4893 7384 7.117523 TGGCACTTCAAACATGCAAATAATTAC 59.882 33.333 0.00 0.00 41.27 1.89
4916 7407 6.581712 ACTTTTTAACATCCAAACACTGCAT 58.418 32.000 0.00 0.00 0.00 3.96
4926 7417 4.887071 TCCAAACACTGCATAGTTCACTTT 59.113 37.500 4.61 0.00 34.07 2.66
4930 7421 6.639632 AACACTGCATAGTTCACTTTGAAT 57.360 33.333 1.95 0.00 38.79 2.57
4960 7451 6.152932 AGTTTTGAACATCTGAACATTGCT 57.847 33.333 0.00 0.00 0.00 3.91
4965 7456 6.486253 TGAACATCTGAACATTGCTTAGAC 57.514 37.500 0.00 0.00 0.00 2.59
4971 7462 7.119846 ACATCTGAACATTGCTTAGACTAAACC 59.880 37.037 0.00 0.00 0.00 3.27
4995 7486 5.263968 ACATCCAAACTACTAGATCACCG 57.736 43.478 0.00 0.00 0.00 4.94
4996 7487 4.710375 ACATCCAAACTACTAGATCACCGT 59.290 41.667 0.00 0.00 0.00 4.83
5007 7498 9.618890 ACTACTAGATCACCGTAACATTACTAA 57.381 33.333 0.00 0.00 0.00 2.24
5018 7509 6.017275 CCGTAACATTACTAAGATCGACTCCT 60.017 42.308 0.00 0.00 0.00 3.69
5052 7543 1.156736 GGTTGTCCCAGTCAATGTCG 58.843 55.000 0.00 0.00 0.00 4.35
5061 7552 1.080093 GTCAATGTCGCCGGACTCA 60.080 57.895 5.05 0.00 43.79 3.41
5070 7561 1.657751 CGCCGGACTCATCACTCTCA 61.658 60.000 5.05 0.00 0.00 3.27
5072 7563 1.269517 GCCGGACTCATCACTCTCATC 60.270 57.143 5.05 0.00 0.00 2.92
5074 7565 1.673400 CGGACTCATCACTCTCATCGT 59.327 52.381 0.00 0.00 0.00 3.73
5078 7569 3.092301 ACTCATCACTCTCATCGTTGGA 58.908 45.455 0.00 0.00 0.00 3.53
5092 7583 0.680061 GTTGGACTCAACCTCCTCGT 59.320 55.000 0.00 0.00 45.50 4.18
5149 7640 0.759346 ATCCTCCGTATTGTGCTCCC 59.241 55.000 0.00 0.00 0.00 4.30
5153 7644 0.912487 TCCGTATTGTGCTCCCCCTT 60.912 55.000 0.00 0.00 0.00 3.95
5159 7650 2.747855 GTGCTCCCCCTTCTTGCG 60.748 66.667 0.00 0.00 0.00 4.85
5162 7653 2.124942 CTCCCCCTTCTTGCGCTC 60.125 66.667 9.73 0.00 0.00 5.03
5165 7656 2.815647 CCCCTTCTTGCGCTCGTC 60.816 66.667 9.73 0.00 0.00 4.20
5184 7675 0.463833 CGCCCTCTTCCATAACCACC 60.464 60.000 0.00 0.00 0.00 4.61
5185 7676 0.919710 GCCCTCTTCCATAACCACCT 59.080 55.000 0.00 0.00 0.00 4.00
5230 7721 1.942677 TTTTTCACAGCGAACCTCGA 58.057 45.000 0.00 0.00 43.74 4.04
5231 7722 2.163818 TTTTCACAGCGAACCTCGAT 57.836 45.000 0.00 0.00 43.74 3.59
5234 7725 3.520290 TTCACAGCGAACCTCGATATT 57.480 42.857 0.00 0.00 43.74 1.28
5248 7739 1.639298 GATATTGCCGCCTCATCGCC 61.639 60.000 0.00 0.00 0.00 5.54
5266 7757 3.571748 CCTCGTGGGTGTCTCTCTA 57.428 57.895 0.00 0.00 0.00 2.43
5270 7761 1.096416 CGTGGGTGTCTCTCTACTCC 58.904 60.000 0.00 0.00 33.22 3.85
5275 7766 2.091555 GGGTGTCTCTCTACTCCAGGAT 60.092 54.545 0.00 0.00 35.22 3.24
5280 7771 3.255642 GTCTCTCTACTCCAGGATGATGC 59.744 52.174 0.00 0.00 39.69 3.91
5324 7815 3.425659 GAGCTGAAAGGACATTTCCCTT 58.574 45.455 9.90 0.00 45.74 3.95
5329 7820 5.760131 CTGAAAGGACATTTCCCTTCCTAT 58.240 41.667 9.90 0.00 45.74 2.57
5337 7828 6.345096 ACATTTCCCTTCCTATGTGTTTTG 57.655 37.500 0.00 0.00 30.51 2.44
5339 7830 4.463050 TTCCCTTCCTATGTGTTTTGGT 57.537 40.909 0.00 0.00 0.00 3.67
5361 7852 5.915758 GGTGTTTATGACAACGCAATTTACA 59.084 36.000 0.06 0.00 40.65 2.41
5369 7860 5.524281 TGACAACGCAATTTACAGACTAACA 59.476 36.000 0.00 0.00 0.00 2.41
5370 7861 5.985781 ACAACGCAATTTACAGACTAACAG 58.014 37.500 0.00 0.00 0.00 3.16
5371 7862 5.526111 ACAACGCAATTTACAGACTAACAGT 59.474 36.000 0.00 0.00 0.00 3.55
5372 7863 5.591643 ACGCAATTTACAGACTAACAGTG 57.408 39.130 0.00 0.00 0.00 3.66
5373 7864 5.054477 ACGCAATTTACAGACTAACAGTGT 58.946 37.500 0.00 0.00 0.00 3.55
5374 7865 5.050363 ACGCAATTTACAGACTAACAGTGTG 60.050 40.000 0.00 2.21 44.20 3.82
5375 7866 5.147162 GCAATTTACAGACTAACAGTGTGC 58.853 41.667 0.00 0.00 42.61 4.57
5376 7867 5.049405 GCAATTTACAGACTAACAGTGTGCT 60.049 40.000 0.00 0.00 42.61 4.40
5377 7868 6.147164 GCAATTTACAGACTAACAGTGTGCTA 59.853 38.462 0.00 0.00 42.61 3.49
5378 7869 7.510630 CAATTTACAGACTAACAGTGTGCTAC 58.489 38.462 0.00 0.00 42.61 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.031807 CAGCAAATCGAGATTGGAGCAG 59.968 50.000 13.66 7.86 0.00 4.24
243 244 1.126948 TGATGCACCTGTGGGTCTCA 61.127 55.000 0.00 0.00 45.41 3.27
524 531 0.178924 ATTGGCCCACTTTTCAGCCT 60.179 50.000 0.00 0.00 45.94 4.58
582 589 4.750460 GATACAATCGGCGCTGGA 57.250 55.556 17.88 10.44 0.00 3.86
639 648 2.436646 ATCTTCAGCCGTTGCCCG 60.437 61.111 0.00 0.00 38.69 6.13
756 774 2.223135 GGTACGTAGAGTAGAACACGCC 60.223 54.545 0.00 0.00 37.92 5.68
768 786 3.773667 TGAAGAGAGAGGAGGTACGTAGA 59.226 47.826 0.00 0.00 0.00 2.59
769 787 3.872771 GTGAAGAGAGAGGAGGTACGTAG 59.127 52.174 0.00 0.00 0.00 3.51
809 827 1.005294 GCTAAGTTGGACGAACGCGA 61.005 55.000 15.93 0.00 39.80 5.87
880 899 2.554462 GAGAAAGGAGGGAGTTGTTTGC 59.446 50.000 0.00 0.00 0.00 3.68
908 928 1.729470 TAGTCTCTAGCGCTGGCAGC 61.729 60.000 29.22 29.22 43.41 5.25
909 929 0.310543 CTAGTCTCTAGCGCTGGCAG 59.689 60.000 22.90 16.13 43.41 4.85
950 979 1.306141 AGTGGAGATGGCCGGAAGA 60.306 57.895 5.05 0.00 0.00 2.87
1037 1066 0.390472 GACGAGGAGCAAGACAAGGG 60.390 60.000 0.00 0.00 0.00 3.95
1045 1074 2.177531 GTACGCGACGAGGAGCAA 59.822 61.111 15.93 0.00 0.00 3.91
1155 1184 0.803117 CGTAGAAGTCCAGCGACAGA 59.197 55.000 0.00 0.00 41.87 3.41
1342 1371 0.038343 GGGAATTGCGCAATGTGTGT 60.038 50.000 34.48 19.65 0.00 3.72
1344 1373 0.527565 GAGGGAATTGCGCAATGTGT 59.472 50.000 34.48 20.43 0.00 3.72
1345 1374 0.527113 TGAGGGAATTGCGCAATGTG 59.473 50.000 34.48 0.00 0.00 3.21
1347 1376 0.527113 TGTGAGGGAATTGCGCAATG 59.473 50.000 34.48 0.00 0.00 2.82
1348 1377 0.527565 GTGTGAGGGAATTGCGCAAT 59.472 50.000 29.36 29.36 0.00 3.56
1349 1378 0.821301 TGTGTGAGGGAATTGCGCAA 60.821 50.000 27.24 27.24 0.00 4.85
1350 1379 0.821301 TTGTGTGAGGGAATTGCGCA 60.821 50.000 5.66 5.66 0.00 6.09
1351 1380 0.313672 TTTGTGTGAGGGAATTGCGC 59.686 50.000 0.00 0.00 0.00 6.09
1354 1383 4.037803 TGTGACATTTGTGTGAGGGAATTG 59.962 41.667 0.00 0.00 0.00 2.32
1355 1384 4.214310 TGTGACATTTGTGTGAGGGAATT 58.786 39.130 0.00 0.00 0.00 2.17
1357 1386 3.213506 CTGTGACATTTGTGTGAGGGAA 58.786 45.455 0.00 0.00 0.00 3.97
1358 1387 2.487086 CCTGTGACATTTGTGTGAGGGA 60.487 50.000 0.00 0.00 0.00 4.20
1359 1388 1.881973 CCTGTGACATTTGTGTGAGGG 59.118 52.381 0.00 0.00 0.00 4.30
1360 1389 1.881973 CCCTGTGACATTTGTGTGAGG 59.118 52.381 0.00 0.00 0.00 3.86
1362 1391 1.133823 AGCCCTGTGACATTTGTGTGA 60.134 47.619 0.00 0.00 0.00 3.58
1363 1392 1.001048 CAGCCCTGTGACATTTGTGTG 60.001 52.381 0.00 0.00 0.00 3.82
1364 1393 1.321474 CAGCCCTGTGACATTTGTGT 58.679 50.000 0.00 0.00 0.00 3.72
1365 1394 0.038892 GCAGCCCTGTGACATTTGTG 60.039 55.000 0.00 0.00 0.00 3.33
1366 1395 1.518056 CGCAGCCCTGTGACATTTGT 61.518 55.000 2.78 0.00 43.32 2.83
1367 1396 1.210931 CGCAGCCCTGTGACATTTG 59.789 57.895 2.78 0.00 43.32 2.32
1368 1397 1.073025 TCGCAGCCCTGTGACATTT 59.927 52.632 7.41 0.00 44.22 2.32
1369 1398 2.749682 TCGCAGCCCTGTGACATT 59.250 55.556 7.41 0.00 44.22 2.71
1567 1596 3.869473 TACCAGTTGCACGGCGTCC 62.869 63.158 10.85 0.00 0.00 4.79
1579 1608 2.099141 TAGCACTCGTACGTACCAGT 57.901 50.000 18.70 18.70 0.00 4.00
1588 1617 1.188863 GAGGGGGTTTAGCACTCGTA 58.811 55.000 0.00 0.00 0.00 3.43
1591 1620 1.608154 GGGAGGGGGTTTAGCACTC 59.392 63.158 0.00 0.00 0.00 3.51
1593 1622 2.271173 CGGGAGGGGGTTTAGCAC 59.729 66.667 0.00 0.00 0.00 4.40
1612 1641 8.897752 CCTTTTCCGAGAAAGAAGATGATAATT 58.102 33.333 10.76 0.00 38.60 1.40
1615 1644 6.818644 CACCTTTTCCGAGAAAGAAGATGATA 59.181 38.462 10.76 0.00 38.60 2.15
1650 1679 0.960364 TGCTCTGTGGATTTTCGGGC 60.960 55.000 0.00 0.00 0.00 6.13
1652 1681 2.095567 CAGTTGCTCTGTGGATTTTCGG 60.096 50.000 2.20 0.00 39.17 4.30
1692 1721 2.963101 GCCCTTTTTACTGTCCCAGTTT 59.037 45.455 1.74 0.00 42.59 2.66
1693 1722 2.594131 GCCCTTTTTACTGTCCCAGTT 58.406 47.619 1.74 0.00 42.59 3.16
1743 1781 4.465512 CTGCATGCGACGGTTGGC 62.466 66.667 14.09 0.00 0.00 4.52
1788 1830 3.053896 GCGCGCCTTTACCCACTT 61.054 61.111 23.24 0.00 0.00 3.16
1882 1924 9.601217 TGCAAAATTGGCTAAACTAAAACTAAA 57.399 25.926 0.00 0.00 0.00 1.85
1883 1925 9.771534 ATGCAAAATTGGCTAAACTAAAACTAA 57.228 25.926 0.00 0.00 0.00 2.24
1884 1926 9.771534 AATGCAAAATTGGCTAAACTAAAACTA 57.228 25.926 0.00 0.00 0.00 2.24
1885 1927 8.675705 AATGCAAAATTGGCTAAACTAAAACT 57.324 26.923 0.00 0.00 0.00 2.66
1886 1928 9.805966 GTAATGCAAAATTGGCTAAACTAAAAC 57.194 29.630 0.00 0.00 0.00 2.43
1887 1929 8.704234 CGTAATGCAAAATTGGCTAAACTAAAA 58.296 29.630 0.00 0.00 0.00 1.52
1888 1930 7.329717 CCGTAATGCAAAATTGGCTAAACTAAA 59.670 33.333 0.00 0.00 0.00 1.85
1889 1931 6.809196 CCGTAATGCAAAATTGGCTAAACTAA 59.191 34.615 0.00 0.00 0.00 2.24
1890 1932 6.071840 ACCGTAATGCAAAATTGGCTAAACTA 60.072 34.615 0.00 0.00 0.00 2.24
1891 1933 5.167845 CCGTAATGCAAAATTGGCTAAACT 58.832 37.500 0.00 0.00 0.00 2.66
1892 1934 4.926832 ACCGTAATGCAAAATTGGCTAAAC 59.073 37.500 0.00 0.00 0.00 2.01
1893 1935 5.140747 ACCGTAATGCAAAATTGGCTAAA 57.859 34.783 0.00 0.00 0.00 1.85
1894 1936 4.792521 ACCGTAATGCAAAATTGGCTAA 57.207 36.364 0.00 0.00 0.00 3.09
1895 1937 4.792521 AACCGTAATGCAAAATTGGCTA 57.207 36.364 0.00 0.00 0.00 3.93
1896 1938 3.676291 AACCGTAATGCAAAATTGGCT 57.324 38.095 0.00 0.00 0.00 4.75
1897 1939 5.105752 TGATAACCGTAATGCAAAATTGGC 58.894 37.500 0.00 0.00 0.00 4.52
1898 1940 6.756074 ACATGATAACCGTAATGCAAAATTGG 59.244 34.615 0.00 0.00 0.00 3.16
1899 1941 7.487509 TGACATGATAACCGTAATGCAAAATTG 59.512 33.333 0.00 0.00 0.00 2.32
1900 1942 7.487829 GTGACATGATAACCGTAATGCAAAATT 59.512 33.333 0.00 0.00 0.00 1.82
1901 1943 6.972328 GTGACATGATAACCGTAATGCAAAAT 59.028 34.615 0.00 0.00 0.00 1.82
1902 1944 6.318628 GTGACATGATAACCGTAATGCAAAA 58.681 36.000 0.00 0.00 0.00 2.44
1903 1945 5.446607 CGTGACATGATAACCGTAATGCAAA 60.447 40.000 0.00 0.00 0.00 3.68
1904 1946 4.033472 CGTGACATGATAACCGTAATGCAA 59.967 41.667 0.00 0.00 0.00 4.08
1909 1951 4.142708 ACGTACGTGACATGATAACCGTAA 60.143 41.667 22.14 0.00 33.26 3.18
1912 1954 2.789208 ACGTACGTGACATGATAACCG 58.211 47.619 22.14 0.00 0.00 4.44
1914 1956 4.901312 CGTACGTACGTGACATGATAAC 57.099 45.455 33.95 15.59 44.13 1.89
1937 1979 6.630071 TCAGCCTTTATTTTTACCATTCTGC 58.370 36.000 0.00 0.00 0.00 4.26
1938 1980 6.753744 GCTCAGCCTTTATTTTTACCATTCTG 59.246 38.462 0.00 0.00 0.00 3.02
1939 1981 6.665248 AGCTCAGCCTTTATTTTTACCATTCT 59.335 34.615 0.00 0.00 0.00 2.40
1941 1983 6.857437 AGCTCAGCCTTTATTTTTACCATT 57.143 33.333 0.00 0.00 0.00 3.16
1943 1985 7.954666 ATTAGCTCAGCCTTTATTTTTACCA 57.045 32.000 0.00 0.00 0.00 3.25
1951 1993 5.126061 CCACAACAATTAGCTCAGCCTTTAT 59.874 40.000 0.00 0.00 0.00 1.40
1952 1994 4.458989 CCACAACAATTAGCTCAGCCTTTA 59.541 41.667 0.00 0.00 0.00 1.85
1955 1997 2.224867 ACCACAACAATTAGCTCAGCCT 60.225 45.455 0.00 0.00 0.00 4.58
1957 1999 3.375299 CCTACCACAACAATTAGCTCAGC 59.625 47.826 0.00 0.00 0.00 4.26
1958 2000 4.579869 ACCTACCACAACAATTAGCTCAG 58.420 43.478 0.00 0.00 0.00 3.35
1959 2001 4.634012 ACCTACCACAACAATTAGCTCA 57.366 40.909 0.00 0.00 0.00 4.26
1960 2002 5.959618 AAACCTACCACAACAATTAGCTC 57.040 39.130 0.00 0.00 0.00 4.09
1988 2107 0.249447 CAAGCCGTGTCAGTCACTGA 60.249 55.000 2.36 2.36 44.16 3.41
2004 2123 1.154225 GGTGATTTCCGTGCGCAAG 60.154 57.895 14.00 15.67 43.44 4.01
2005 2124 2.950673 GGTGATTTCCGTGCGCAA 59.049 55.556 14.00 0.00 0.00 4.85
2006 2125 3.418913 CGGTGATTTCCGTGCGCA 61.419 61.111 5.66 5.66 44.77 6.09
2018 2137 1.434555 CCAAACAATCTACGCGGTGA 58.565 50.000 12.47 8.59 0.00 4.02
2060 2179 0.251341 ATCTCCAAGCTGGCCGTTTT 60.251 50.000 0.00 0.00 37.47 2.43
2068 2187 2.428890 AGAGTACCGAATCTCCAAGCTG 59.571 50.000 0.00 0.00 0.00 4.24
2084 2203 6.246163 TGTGACAGTAAGATCCAAGAGAGTA 58.754 40.000 0.00 0.00 0.00 2.59
2113 2232 2.268298 CTTGCATCAAATCTGCTTGGC 58.732 47.619 0.00 0.00 40.34 4.52
2119 2238 3.431922 AATCGCCTTGCATCAAATCTG 57.568 42.857 0.00 0.00 0.00 2.90
2120 2239 4.037208 CCTAAATCGCCTTGCATCAAATCT 59.963 41.667 0.00 0.00 0.00 2.40
2229 2384 1.961394 ACGCTTGACTTGTGGTAGAGA 59.039 47.619 0.00 0.00 0.00 3.10
2230 2385 2.329379 GACGCTTGACTTGTGGTAGAG 58.671 52.381 0.00 0.00 0.00 2.43
2259 2415 3.730715 GTGCTACACAACAATGCAAAGAC 59.269 43.478 0.00 0.00 35.34 3.01
2288 2444 0.095935 CGCATGCGAAAGAAGAGTGG 59.904 55.000 35.82 0.00 42.83 4.00
2320 2477 0.178903 ACCTAGGCAAGAGTGGTCCA 60.179 55.000 9.30 0.00 0.00 4.02
2360 2526 4.033129 GTGCGCCGTATGATTTACTACAAA 59.967 41.667 4.18 0.00 0.00 2.83
2362 2528 3.117794 GTGCGCCGTATGATTTACTACA 58.882 45.455 4.18 0.00 0.00 2.74
2383 2549 1.284657 AAAGATGACGAGCTGATGCG 58.715 50.000 0.00 0.00 45.42 4.73
2409 2575 4.439305 TGTTGCTTGAGAATGCATTACC 57.561 40.909 12.97 7.72 39.07 2.85
2440 2606 8.518430 TGAAATTTATATAAGCTGGTCTGCAA 57.482 30.769 0.00 0.00 34.99 4.08
2441 2607 8.518430 TTGAAATTTATATAAGCTGGTCTGCA 57.482 30.769 0.00 0.00 34.99 4.41
2534 2908 2.747989 TGCACAACCTTTTTCGTACACA 59.252 40.909 0.00 0.00 0.00 3.72
2535 2909 3.408288 TGCACAACCTTTTTCGTACAC 57.592 42.857 0.00 0.00 0.00 2.90
2536 2910 4.640789 ATTGCACAACCTTTTTCGTACA 57.359 36.364 0.00 0.00 0.00 2.90
2537 2911 7.452630 TTTAATTGCACAACCTTTTTCGTAC 57.547 32.000 0.00 0.00 0.00 3.67
2539 2913 6.969828 TTTTAATTGCACAACCTTTTTCGT 57.030 29.167 0.00 0.00 0.00 3.85
2582 3221 9.684448 TTTCTTCGTAATTTCATGTGCATTTTA 57.316 25.926 0.00 0.00 0.00 1.52
2670 3315 9.748708 CTTGTGAGGATTTTTCTAAAATGTGAA 57.251 29.630 2.37 0.00 0.00 3.18
2958 3604 3.414549 TTGTTTCTTTGCCGTGTCTTC 57.585 42.857 0.00 0.00 0.00 2.87
2965 3611 4.026558 GCTTCTTCTTTTGTTTCTTTGCCG 60.027 41.667 0.00 0.00 0.00 5.69
2982 3628 7.147637 TGGGTTTACTTGGTTTATTTGCTTCTT 60.148 33.333 0.00 0.00 0.00 2.52
2985 3631 6.487299 TGGGTTTACTTGGTTTATTTGCTT 57.513 33.333 0.00 0.00 0.00 3.91
2989 3635 7.556996 GGGTTTTTGGGTTTACTTGGTTTATTT 59.443 33.333 0.00 0.00 0.00 1.40
3017 3663 3.680777 TGGTTTTCCCTGTTTCTTCCT 57.319 42.857 0.00 0.00 39.73 3.36
3019 3665 5.339008 ACTTTGGTTTTCCCTGTTTCTTC 57.661 39.130 0.00 0.00 39.73 2.87
3055 3701 9.689976 CAATGGTTTTCTTTGGTTTTTCTTTTT 57.310 25.926 0.00 0.00 0.00 1.94
3056 3702 9.072375 TCAATGGTTTTCTTTGGTTTTTCTTTT 57.928 25.926 0.00 0.00 33.05 2.27
3057 3703 8.628630 TCAATGGTTTTCTTTGGTTTTTCTTT 57.371 26.923 0.00 0.00 33.05 2.52
3058 3704 8.628630 TTCAATGGTTTTCTTTGGTTTTTCTT 57.371 26.923 0.00 0.00 33.05 2.52
3092 3738 6.588373 TCTTTTTCCTTCTGTTTTCGGTTTTG 59.412 34.615 0.00 0.00 0.00 2.44
3133 3783 7.908082 TGTCTAGTTTTCATTGTTTTTCTGTCG 59.092 33.333 0.00 0.00 0.00 4.35
3152 3803 9.921637 TTTTCATTTTCTGTTGTTTTGTCTAGT 57.078 25.926 0.00 0.00 0.00 2.57
3156 3807 9.745323 CTCTTTTTCATTTTCTGTTGTTTTGTC 57.255 29.630 0.00 0.00 0.00 3.18
3277 3930 1.727511 CCTACGGGCGGACGATTACA 61.728 60.000 0.00 0.00 37.61 2.41
3313 3966 4.660303 AGATCTATGTCTTGCCCATACCAA 59.340 41.667 0.00 0.00 0.00 3.67
3314 3967 4.234550 AGATCTATGTCTTGCCCATACCA 58.765 43.478 0.00 0.00 0.00 3.25
3324 3977 2.577700 AGTCCGCGAGATCTATGTCTT 58.422 47.619 8.23 0.00 0.00 3.01
3333 3986 1.736586 CCTAGCAAGTCCGCGAGAT 59.263 57.895 8.23 0.00 36.83 2.75
3342 3995 3.416156 CTTTTCTTCTGGCCTAGCAAGT 58.584 45.455 3.32 0.00 30.42 3.16
3343 3996 2.751806 CCTTTTCTTCTGGCCTAGCAAG 59.248 50.000 3.32 0.53 0.00 4.01
3348 4001 2.158534 TGCAACCTTTTCTTCTGGCCTA 60.159 45.455 3.32 0.00 0.00 3.93
3417 5403 5.532779 CCTGACCTAAGATTAATGGGCTTTC 59.467 44.000 0.00 0.00 0.00 2.62
3455 5826 0.034574 TTTCGCCCATGTAGCATGGT 60.035 50.000 22.09 1.62 37.48 3.55
3507 5878 2.601905 ACAAGCCCTCATGAGCTTTTT 58.398 42.857 17.76 6.05 46.99 1.94
3508 5879 2.298163 CAACAAGCCCTCATGAGCTTTT 59.702 45.455 17.76 9.62 46.99 2.27
3509 5880 1.891150 CAACAAGCCCTCATGAGCTTT 59.109 47.619 17.76 7.85 46.99 3.51
3511 5882 0.403271 ACAACAAGCCCTCATGAGCT 59.597 50.000 17.76 10.47 42.40 4.09
3512 5883 1.068055 CAACAACAAGCCCTCATGAGC 60.068 52.381 17.76 8.07 0.00 4.26
3513 5884 2.233271 ACAACAACAAGCCCTCATGAG 58.767 47.619 16.24 16.24 0.00 2.90
3514 5885 2.363306 ACAACAACAAGCCCTCATGA 57.637 45.000 0.00 0.00 0.00 3.07
3515 5886 3.457610 AAACAACAACAAGCCCTCATG 57.542 42.857 0.00 0.00 0.00 3.07
3516 5887 4.162131 AGAAAAACAACAACAAGCCCTCAT 59.838 37.500 0.00 0.00 0.00 2.90
3517 5888 3.513515 AGAAAAACAACAACAAGCCCTCA 59.486 39.130 0.00 0.00 0.00 3.86
3518 5889 4.112634 GAGAAAAACAACAACAAGCCCTC 58.887 43.478 0.00 0.00 0.00 4.30
3519 5890 3.513515 TGAGAAAAACAACAACAAGCCCT 59.486 39.130 0.00 0.00 0.00 5.19
3520 5891 3.855858 TGAGAAAAACAACAACAAGCCC 58.144 40.909 0.00 0.00 0.00 5.19
3521 5892 5.854431 TTTGAGAAAAACAACAACAAGCC 57.146 34.783 0.00 0.00 0.00 4.35
3522 5893 7.571892 TCTTTTTGAGAAAAACAACAACAAGC 58.428 30.769 0.00 0.00 35.57 4.01
3537 5908 6.346096 TCTCCTCTTCGTTTTCTTTTTGAGA 58.654 36.000 0.00 0.00 0.00 3.27
3546 5917 2.612604 GGAGCTCTCCTCTTCGTTTTC 58.387 52.381 14.64 0.00 46.16 2.29
3557 5928 2.767505 TGAACTTTTTCGGAGCTCTCC 58.232 47.619 14.64 5.85 46.18 3.71
3558 5929 4.813296 TTTGAACTTTTTCGGAGCTCTC 57.187 40.909 14.64 2.76 34.04 3.20
3559 5930 5.576447 TTTTTGAACTTTTTCGGAGCTCT 57.424 34.783 14.64 0.00 34.04 4.09
3596 5967 6.753107 TTTGTTCTTTTCGAAGTTCTCCTT 57.247 33.333 0.00 0.00 35.59 3.36
3603 5974 9.849166 TTCATTTAGTTTTGTTCTTTTCGAAGT 57.151 25.926 0.00 0.00 30.85 3.01
3607 5978 8.958043 CCTCTTCATTTAGTTTTGTTCTTTTCG 58.042 33.333 0.00 0.00 0.00 3.46
3676 6047 6.573434 TGCTCACGTATCTAGACAAATCAAT 58.427 36.000 0.00 0.00 0.00 2.57
3684 6055 2.544069 GGCCTTGCTCACGTATCTAGAC 60.544 54.545 0.00 0.00 0.00 2.59
3695 6066 3.610637 GCAATTTTGGCCTTGCTCA 57.389 47.368 17.70 0.00 43.41 4.26
3708 6089 6.705825 GTCTTGTTAAATTTGTGGAGGCAATT 59.294 34.615 0.00 0.00 0.00 2.32
3728 6109 6.351286 CCCTCCCTTCCAAATTATTTGTCTTG 60.351 42.308 15.40 1.88 38.98 3.02
3742 6123 5.698369 ATATTAGTACTCCCTCCCTTCCA 57.302 43.478 0.00 0.00 0.00 3.53
3747 6128 5.192176 CCGACTATATTAGTACTCCCTCCC 58.808 50.000 0.00 0.00 39.59 4.30
3781 6162 3.306019 CCTGCACAAAATTACCACCTTCC 60.306 47.826 0.00 0.00 0.00 3.46
3811 6192 3.354467 CTTCTTCACCTCGTAGTAGGGT 58.646 50.000 0.00 0.00 41.32 4.34
4043 6424 2.125269 GTCCATGAACGGGTCCGG 60.125 66.667 14.25 0.00 44.69 5.14
4378 6759 8.631480 TTTTCTTTTGAGGGGAATCTACTTAC 57.369 34.615 0.00 0.00 0.00 2.34
4401 6782 9.433153 GCCATCTACTTAGTAGTACAAGTTTTT 57.567 33.333 17.69 6.08 37.41 1.94
4402 6783 8.039538 GGCCATCTACTTAGTAGTACAAGTTTT 58.960 37.037 17.69 6.32 37.41 2.43
4403 6784 7.554211 GGCCATCTACTTAGTAGTACAAGTTT 58.446 38.462 17.69 6.55 37.41 2.66
4404 6785 6.183360 CGGCCATCTACTTAGTAGTACAAGTT 60.183 42.308 17.69 4.16 37.41 2.66
4405 6786 5.298777 CGGCCATCTACTTAGTAGTACAAGT 59.701 44.000 17.69 16.87 37.41 3.16
4406 6787 5.278364 CCGGCCATCTACTTAGTAGTACAAG 60.278 48.000 17.69 6.95 37.41 3.16
4407 6788 4.581824 CCGGCCATCTACTTAGTAGTACAA 59.418 45.833 17.69 0.52 37.41 2.41
4408 6789 4.139786 CCGGCCATCTACTTAGTAGTACA 58.860 47.826 17.69 0.87 37.41 2.90
4409 6790 4.140536 ACCGGCCATCTACTTAGTAGTAC 58.859 47.826 17.69 7.10 37.41 2.73
4410 6791 4.392940 GACCGGCCATCTACTTAGTAGTA 58.607 47.826 17.69 6.64 37.41 1.82
4411 6792 3.220940 GACCGGCCATCTACTTAGTAGT 58.779 50.000 17.69 4.36 37.41 2.73
4412 6793 2.225963 CGACCGGCCATCTACTTAGTAG 59.774 54.545 12.85 12.85 37.47 2.57
4413 6794 2.224606 CGACCGGCCATCTACTTAGTA 58.775 52.381 0.00 0.00 0.00 1.82
4414 6795 1.030457 CGACCGGCCATCTACTTAGT 58.970 55.000 0.00 0.00 0.00 2.24
4445 6826 5.128991 TGAACAGAAGAGATCAGCTCATCAT 59.871 40.000 0.00 0.00 46.45 2.45
4446 6827 4.465305 TGAACAGAAGAGATCAGCTCATCA 59.535 41.667 0.00 0.00 46.45 3.07
4452 6833 2.266554 CCGTGAACAGAAGAGATCAGC 58.733 52.381 0.00 0.00 0.00 4.26
4453 6834 2.094286 AGCCGTGAACAGAAGAGATCAG 60.094 50.000 0.00 0.00 0.00 2.90
4508 6895 5.163733 ACGCACTTTTAAAAGAGGAAACGAA 60.164 36.000 29.97 0.00 39.31 3.85
4520 6907 3.860536 GCCTGTTGAAACGCACTTTTAAA 59.139 39.130 0.00 0.00 0.00 1.52
4523 6910 1.797348 CGCCTGTTGAAACGCACTTTT 60.797 47.619 0.00 0.00 0.00 2.27
4524 6911 0.248458 CGCCTGTTGAAACGCACTTT 60.248 50.000 0.00 0.00 0.00 2.66
4525 6912 1.355210 CGCCTGTTGAAACGCACTT 59.645 52.632 0.00 0.00 0.00 3.16
4560 7031 3.414700 GGGAGACGTGCGTGCTTG 61.415 66.667 0.67 0.00 0.00 4.01
4577 7048 1.003233 GGAGGTCACCCACTTAACAGG 59.997 57.143 0.00 0.00 0.00 4.00
4618 7089 1.556911 AGACACTGCAATCCGATCCTT 59.443 47.619 0.00 0.00 0.00 3.36
4620 7091 1.134699 TCAGACACTGCAATCCGATCC 60.135 52.381 0.00 0.00 0.00 3.36
4621 7092 2.299993 TCAGACACTGCAATCCGATC 57.700 50.000 0.00 0.00 0.00 3.69
4622 7093 2.289631 TGTTCAGACACTGCAATCCGAT 60.290 45.455 0.00 0.00 0.00 4.18
4623 7094 1.069978 TGTTCAGACACTGCAATCCGA 59.930 47.619 0.00 0.00 0.00 4.55
4624 7095 1.511850 TGTTCAGACACTGCAATCCG 58.488 50.000 0.00 0.00 0.00 4.18
4625 7096 4.232221 CAAATGTTCAGACACTGCAATCC 58.768 43.478 0.00 0.00 38.91 3.01
4626 7097 4.863491 ACAAATGTTCAGACACTGCAATC 58.137 39.130 0.00 0.00 38.91 2.67
4627 7098 4.924305 ACAAATGTTCAGACACTGCAAT 57.076 36.364 0.00 0.00 38.91 3.56
4628 7099 4.717233 AACAAATGTTCAGACACTGCAA 57.283 36.364 0.00 0.00 38.91 4.08
4629 7100 4.717233 AAACAAATGTTCAGACACTGCA 57.283 36.364 0.00 0.00 38.91 4.41
4631 7102 5.577945 AGCAAAAACAAATGTTCAGACACTG 59.422 36.000 0.00 0.00 38.91 3.66
4634 7105 4.869297 CCAGCAAAAACAAATGTTCAGACA 59.131 37.500 0.00 0.00 40.71 3.41
4635 7106 4.260334 GCCAGCAAAAACAAATGTTCAGAC 60.260 41.667 0.00 0.00 37.25 3.51
4636 7107 3.870419 GCCAGCAAAAACAAATGTTCAGA 59.130 39.130 0.00 0.00 37.25 3.27
4637 7108 3.622163 TGCCAGCAAAAACAAATGTTCAG 59.378 39.130 0.00 0.00 37.25 3.02
4638 7109 3.603532 TGCCAGCAAAAACAAATGTTCA 58.396 36.364 0.00 0.00 37.25 3.18
4640 7111 4.883006 AGAATGCCAGCAAAAACAAATGTT 59.117 33.333 0.00 0.00 40.50 2.71
4643 7134 7.444792 TCATTAAGAATGCCAGCAAAAACAAAT 59.555 29.630 0.00 0.00 38.77 2.32
4651 7142 5.066893 GTCAGATCATTAAGAATGCCAGCAA 59.933 40.000 0.00 0.00 38.77 3.91
4657 7148 7.441760 AGACTCATGTCAGATCATTAAGAATGC 59.558 37.037 0.00 0.00 45.20 3.56
4671 7162 5.850557 AGTCCAGAATAGACTCATGTCAG 57.149 43.478 0.00 0.00 40.61 3.51
4694 7185 5.629079 AAGGGCTCGTATTTTCTTCTTTG 57.371 39.130 0.00 0.00 0.00 2.77
4695 7186 6.004574 AGAAAGGGCTCGTATTTTCTTCTTT 58.995 36.000 0.00 0.00 36.72 2.52
4730 7221 6.240894 TGTTGGAGATGCTTTAAGAAGACAT 58.759 36.000 0.00 0.00 34.71 3.06
4741 7232 1.251251 GGCTGTTGTTGGAGATGCTT 58.749 50.000 0.00 0.00 0.00 3.91
4742 7233 0.610232 GGGCTGTTGTTGGAGATGCT 60.610 55.000 0.00 0.00 0.00 3.79
4758 7249 4.545208 TTTTTGGTGCCTAAAATAGGGC 57.455 40.909 5.62 0.00 46.32 5.19
4776 7267 9.542462 GCCTCCAATTTTACTCTAAAAGTTTTT 57.458 29.630 6.10 0.00 40.58 1.94
4797 7288 5.062183 GCGAAAAGTAATTTTTGATGCCTCC 59.938 40.000 17.63 0.00 39.06 4.30
4801 7292 5.494863 ACGCGAAAAGTAATTTTTGATGC 57.505 34.783 15.93 11.18 39.06 3.91
4804 7295 9.713740 TTTTAGTACGCGAAAAGTAATTTTTGA 57.286 25.926 15.93 0.00 39.06 2.69
4828 7319 2.896685 TGGGGATGAACATTCGCTTTTT 59.103 40.909 10.61 0.00 31.13 1.94
4833 7324 1.173043 TGTTGGGGATGAACATTCGC 58.827 50.000 3.63 3.63 0.00 4.70
4834 7325 2.819608 AGTTGTTGGGGATGAACATTCG 59.180 45.455 0.00 0.00 33.41 3.34
4835 7326 3.573967 ACAGTTGTTGGGGATGAACATTC 59.426 43.478 0.00 0.00 33.41 2.67
4892 7383 5.971763 TGCAGTGTTTGGATGTTAAAAAGT 58.028 33.333 0.00 0.00 0.00 2.66
4893 7384 7.867403 ACTATGCAGTGTTTGGATGTTAAAAAG 59.133 33.333 0.00 0.00 38.43 2.27
4900 7391 4.216257 GTGAACTATGCAGTGTTTGGATGT 59.784 41.667 8.25 0.00 38.43 3.06
4911 7402 9.844790 TTTCAATATTCAAAGTGAACTATGCAG 57.155 29.630 0.00 0.00 39.45 4.41
4949 7440 6.801539 TGGTTTAGTCTAAGCAATGTTCAG 57.198 37.500 8.51 0.00 33.02 3.02
4950 7441 6.544197 TGTTGGTTTAGTCTAAGCAATGTTCA 59.456 34.615 8.51 1.88 44.40 3.18
4960 7451 8.434392 AGTAGTTTGGATGTTGGTTTAGTCTAA 58.566 33.333 0.00 0.00 0.00 2.10
4965 7456 9.099454 GATCTAGTAGTTTGGATGTTGGTTTAG 57.901 37.037 0.00 0.00 0.00 1.85
4971 7462 5.520288 CGGTGATCTAGTAGTTTGGATGTTG 59.480 44.000 0.00 0.00 0.00 3.33
4995 7486 8.008844 CGTAGGAGTCGATCTTAGTAATGTTAC 58.991 40.741 0.00 0.00 0.00 2.50
4996 7487 8.081208 CGTAGGAGTCGATCTTAGTAATGTTA 57.919 38.462 0.00 0.00 0.00 2.41
5041 7532 1.078759 GAGTCCGGCGACATTGACTG 61.079 60.000 18.13 0.00 41.87 3.51
5052 7543 0.749649 ATGAGAGTGATGAGTCCGGC 59.250 55.000 0.00 0.00 0.00 6.13
5061 7552 3.092301 TGAGTCCAACGATGAGAGTGAT 58.908 45.455 0.00 0.00 0.00 3.06
5074 7565 0.966920 GACGAGGAGGTTGAGTCCAA 59.033 55.000 0.00 0.00 36.43 3.53
5078 7569 1.074423 TCCGACGAGGAGGTTGAGT 59.926 57.895 0.00 0.00 45.98 3.41
5092 7583 2.089201 TGTGATAAAGCTCGAGTCCGA 58.911 47.619 15.13 0.00 43.35 4.55
5130 7621 0.759346 GGGAGCACAATACGGAGGAT 59.241 55.000 0.00 0.00 0.00 3.24
5149 7640 3.181967 CGACGAGCGCAAGAAGGG 61.182 66.667 11.47 0.00 43.02 3.95
5162 7653 0.529992 GGTTATGGAAGAGGGCGACG 60.530 60.000 0.00 0.00 0.00 5.12
5165 7656 0.463833 GGTGGTTATGGAAGAGGGCG 60.464 60.000 0.00 0.00 0.00 6.13
5184 7675 1.284657 CTTGTGCATGCGGAGACTAG 58.715 55.000 14.09 7.99 0.00 2.57
5185 7676 0.108186 CCTTGTGCATGCGGAGACTA 60.108 55.000 14.09 1.51 0.00 2.59
5210 7701 2.489971 TCGAGGTTCGCTGTGAAAAAT 58.510 42.857 5.05 0.00 40.21 1.82
5230 7721 3.972227 GCGATGAGGCGGCAATAT 58.028 55.556 13.08 1.53 0.00 1.28
5248 7739 1.096416 GTAGAGAGACACCCACGAGG 58.904 60.000 0.00 0.00 43.78 4.63
5252 7743 2.096248 CTGGAGTAGAGAGACACCCAC 58.904 57.143 0.00 0.00 29.64 4.61
5253 7744 1.006043 CCTGGAGTAGAGAGACACCCA 59.994 57.143 0.00 0.00 29.64 4.51
5261 7752 2.234143 CGCATCATCCTGGAGTAGAGA 58.766 52.381 1.52 0.00 0.00 3.10
5266 7757 1.690219 GACCCGCATCATCCTGGAGT 61.690 60.000 1.52 0.00 0.00 3.85
5298 7789 2.436824 GTCCTTTCAGCTCCGCCC 60.437 66.667 0.00 0.00 0.00 6.13
5301 7792 1.740025 GGAAATGTCCTTTCAGCTCCG 59.260 52.381 0.00 0.00 44.29 4.63
5314 7805 5.245977 CCAAAACACATAGGAAGGGAAATGT 59.754 40.000 0.00 0.00 32.91 2.71
5324 7815 6.773200 TGTCATAAACACCAAAACACATAGGA 59.227 34.615 0.00 0.00 31.20 2.94
5329 7820 5.096169 CGTTGTCATAAACACCAAAACACA 58.904 37.500 0.00 0.00 37.70 3.72
5337 7828 5.915758 TGTAAATTGCGTTGTCATAAACACC 59.084 36.000 0.00 0.00 37.70 4.16
5339 7830 6.853872 GTCTGTAAATTGCGTTGTCATAAACA 59.146 34.615 0.00 0.00 35.59 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.