Multiple sequence alignment - TraesCS3D01G243800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G243800 chr3D 100.000 3400 0 0 1 3400 339006518 339003119 0.000000e+00 6279.0
1 TraesCS3D01G243800 chr3D 85.759 323 45 1 2053 2375 401028756 401028435 1.170000e-89 340.0
2 TraesCS3D01G243800 chr3D 92.857 42 1 2 155 195 452576509 452576549 3.660000e-05 60.2
3 TraesCS3D01G243800 chr3A 93.460 1835 80 17 796 2626 465817781 465819579 0.000000e+00 2687.0
4 TraesCS3D01G243800 chr3A 94.286 175 6 1 2837 3007 124644215 124644389 7.230000e-67 265.0
5 TraesCS3D01G243800 chr3A 93.785 177 7 1 2835 3007 124625181 124625357 2.600000e-66 263.0
6 TraesCS3D01G243800 chr3A 92.857 84 6 0 3317 3400 365901434 365901517 4.610000e-24 122.0
7 TraesCS3D01G243800 chr3A 76.543 162 30 6 260 414 486922163 486922003 7.820000e-12 82.4
8 TraesCS3D01G243800 chr3B 97.500 1000 21 4 1829 2826 437514580 437513583 0.000000e+00 1705.0
9 TraesCS3D01G243800 chr3B 95.542 987 40 2 797 1780 437515566 437514581 0.000000e+00 1576.0
10 TraesCS3D01G243800 chr3B 85.778 450 33 20 343 767 437516471 437516028 6.690000e-122 448.0
11 TraesCS3D01G243800 chr3B 82.524 309 50 3 2094 2401 526805439 526805134 5.590000e-68 268.0
12 TraesCS3D01G243800 chr4A 92.903 310 18 1 3007 3316 442133865 442134170 6.690000e-122 448.0
13 TraesCS3D01G243800 chr4A 93.382 272 14 1 3007 3278 442125802 442126069 1.900000e-107 399.0
14 TraesCS3D01G243800 chr4A 93.785 177 7 1 2835 3007 233029488 233029664 2.600000e-66 263.0
15 TraesCS3D01G243800 chr4A 93.785 177 7 2 2835 3007 296262039 296262215 2.600000e-66 263.0
16 TraesCS3D01G243800 chr4A 82.639 288 30 15 1113 1391 457483506 457483782 1.580000e-58 237.0
17 TraesCS3D01G243800 chr4A 87.097 93 9 3 562 652 482514378 482514469 6.000000e-18 102.0
18 TraesCS3D01G243800 chr6D 92.605 311 17 4 3007 3316 243970529 243970224 3.110000e-120 442.0
19 TraesCS3D01G243800 chr6D 88.141 312 27 8 3007 3313 411721407 411721713 2.490000e-96 363.0
20 TraesCS3D01G243800 chr6D 93.785 177 7 3 2835 3007 170940333 170940157 2.600000e-66 263.0
21 TraesCS3D01G243800 chr6D 78.423 241 37 9 417 642 763674 763434 3.540000e-30 143.0
22 TraesCS3D01G243800 chr6D 95.062 81 4 0 3320 3400 170939759 170939679 9.900000e-26 128.0
23 TraesCS3D01G243800 chr6D 93.827 81 5 0 3320 3400 243970186 243970106 4.610000e-24 122.0
24 TraesCS3D01G243800 chr6D 79.679 187 22 7 463 642 106046250 106046427 1.660000e-23 121.0
25 TraesCS3D01G243800 chr1D 88.136 354 42 0 2052 2405 470481988 470482341 4.060000e-114 422.0
26 TraesCS3D01G243800 chr1D 89.677 310 19 5 3007 3313 294537507 294537806 1.910000e-102 383.0
27 TraesCS3D01G243800 chr1D 93.785 177 7 1 2835 3007 401873155 401873331 2.600000e-66 263.0
28 TraesCS3D01G243800 chr1D 82.069 290 33 15 1115 1391 470480130 470480413 2.640000e-56 230.0
29 TraesCS3D01G243800 chr1A 88.068 352 41 1 2050 2400 564101956 564102307 1.890000e-112 416.0
30 TraesCS3D01G243800 chr1A 86.834 319 26 14 3007 3314 155428858 155428545 3.250000e-90 342.0
31 TraesCS3D01G243800 chr1A 82.534 292 30 19 1115 1391 564100256 564100541 1.580000e-58 237.0
32 TraesCS3D01G243800 chr1A 75.875 257 47 11 417 659 63088093 63087838 2.140000e-22 117.0
33 TraesCS3D01G243800 chr6A 85.280 428 22 5 3007 3400 394837142 394837562 1.470000e-108 403.0
34 TraesCS3D01G243800 chr6A 94.318 176 6 1 2835 3006 458533590 458533415 2.010000e-67 267.0
35 TraesCS3D01G243800 chr6A 93.785 177 7 1 2835 3007 89362907 89363083 2.600000e-66 263.0
36 TraesCS3D01G243800 chr6A 80.282 284 40 11 1115 1391 8643494 8643220 2.070000e-47 200.0
37 TraesCS3D01G243800 chr6A 93.827 81 3 2 3320 3400 385339649 385339571 1.660000e-23 121.0
38 TraesCS3D01G243800 chr6A 94.444 72 4 0 1320 1391 41427859 41427788 9.970000e-21 111.0
39 TraesCS3D01G243800 chr1B 87.106 349 45 0 2052 2400 653185420 653185768 2.460000e-106 396.0
40 TraesCS3D01G243800 chr1B 86.957 322 34 8 3007 3321 285173307 285172987 4.170000e-94 355.0
41 TraesCS3D01G243800 chr1B 81.849 292 33 15 1115 1391 653183488 653183774 9.490000e-56 228.0
42 TraesCS3D01G243800 chr7D 88.959 317 23 10 3007 3316 134980249 134979938 6.880000e-102 381.0
43 TraesCS3D01G243800 chr7D 88.179 313 28 7 3007 3316 371082307 371082001 6.930000e-97 364.0
44 TraesCS3D01G243800 chr7D 83.471 121 12 8 533 647 613796323 613796441 4.640000e-19 106.0
45 TraesCS3D01G243800 chr7D 83.562 73 9 2 264 336 218053801 218053732 7.880000e-07 65.8
46 TraesCS3D01G243800 chr7D 100.000 31 0 0 9 39 482236188 482236158 1.320000e-04 58.4
47 TraesCS3D01G243800 chr7D 100.000 30 0 0 85 114 613796212 613796241 4.740000e-04 56.5
48 TraesCS3D01G243800 chr5D 82.110 436 28 22 3007 3400 224254046 224253619 9.100000e-86 327.0
49 TraesCS3D01G243800 chr5D 92.593 81 5 1 3320 3400 224262359 224262280 7.710000e-22 115.0
50 TraesCS3D01G243800 chr5A 93.785 177 7 1 2835 3007 96274447 96274623 2.600000e-66 263.0
51 TraesCS3D01G243800 chr5A 82.069 290 27 15 1113 1391 431435823 431435548 1.230000e-54 224.0
52 TraesCS3D01G243800 chr5A 81.272 283 39 10 1115 1391 60680752 60681026 2.050000e-52 217.0
53 TraesCS3D01G243800 chr5A 95.238 84 4 0 3317 3400 96231512 96231595 2.130000e-27 134.0
54 TraesCS3D01G243800 chr5A 94.595 37 2 0 3 39 482360709 482360745 1.320000e-04 58.4
55 TraesCS3D01G243800 chr7A 83.158 285 36 9 1111 1391 161958155 161957879 2.030000e-62 250.0
56 TraesCS3D01G243800 chr7A 82.353 289 25 17 1111 1391 40457774 40457504 9.490000e-56 228.0
57 TraesCS3D01G243800 chr7A 78.414 227 34 9 430 642 14828289 14828514 2.130000e-27 134.0
58 TraesCS3D01G243800 chr7A 93.103 87 6 0 3314 3400 242855573 242855659 9.900000e-26 128.0
59 TraesCS3D01G243800 chr7A 85.149 101 11 4 533 630 705665024 705665123 2.160000e-17 100.0
60 TraesCS3D01G243800 chr7A 79.054 148 23 8 42 184 653516318 653516174 1.000000e-15 95.3
61 TraesCS3D01G243800 chr7A 77.863 131 22 5 57 184 715762717 715762591 1.310000e-09 75.0
62 TraesCS3D01G243800 chr7A 91.489 47 3 1 68 114 644090662 644090707 2.830000e-06 63.9
63 TraesCS3D01G243800 chr2A 81.533 287 35 12 1113 1391 5262977 5262701 1.590000e-53 220.0
64 TraesCS3D01G243800 chr2A 79.870 154 21 9 257 400 53992662 53992815 1.670000e-18 104.0
65 TraesCS3D01G243800 chr4B 75.847 236 45 7 136 359 660929356 660929121 3.590000e-20 110.0
66 TraesCS3D01G243800 chr4B 75.424 236 44 8 138 359 660904056 660903821 6.000000e-18 102.0
67 TraesCS3D01G243800 chr7B 89.024 82 8 1 562 642 599254616 599254697 2.160000e-17 100.0
68 TraesCS3D01G243800 chr7B 86.076 79 6 4 260 336 217783516 217783441 2.810000e-11 80.5
69 TraesCS3D01G243800 chr2D 74.627 268 48 16 138 400 13569919 13570171 2.160000e-17 100.0
70 TraesCS3D01G243800 chrUn 76.744 172 35 5 178 345 15936375 15936205 1.300000e-14 91.6
71 TraesCS3D01G243800 chr4D 82.143 84 9 6 257 336 32072377 32072458 2.190000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G243800 chr3D 339003119 339006518 3399 True 6279.0 6279 100.0000 1 3400 1 chr3D.!!$R1 3399
1 TraesCS3D01G243800 chr3A 465817781 465819579 1798 False 2687.0 2687 93.4600 796 2626 1 chr3A.!!$F4 1830
2 TraesCS3D01G243800 chr3B 437513583 437516471 2888 True 1243.0 1705 92.9400 343 2826 3 chr3B.!!$R2 2483
3 TraesCS3D01G243800 chr1D 470480130 470482341 2211 False 326.0 422 85.1025 1115 2405 2 chr1D.!!$F3 1290
4 TraesCS3D01G243800 chr1A 564100256 564102307 2051 False 326.5 416 85.3010 1115 2400 2 chr1A.!!$F1 1285
5 TraesCS3D01G243800 chr1B 653183488 653185768 2280 False 312.0 396 84.4775 1115 2400 2 chr1B.!!$F1 1285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.027194 CCGCAAGATGCACGAATCTG 59.973 55.0 2.99 0.0 45.36 2.90 F
790 1253 0.253327 GAAAAGCATCCCGGACCTCT 59.747 55.0 0.73 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1773 0.111089 GCACAGACGAGAAAACAGCG 60.111 55.0 0.0 0.0 0.00 5.18 R
2427 4436 0.463620 TTTTGTGCTTCTGCCCAACC 59.536 50.0 0.0 0.0 36.36 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.060326 TTCTTGCACGAGAAGTACGG 57.940 50.000 0.00 0.00 32.19 4.02
20 21 1.241165 TCTTGCACGAGAAGTACGGA 58.759 50.000 0.00 0.00 34.93 4.69
21 22 1.816835 TCTTGCACGAGAAGTACGGAT 59.183 47.619 0.00 0.00 34.93 4.18
22 23 2.230508 TCTTGCACGAGAAGTACGGATT 59.769 45.455 0.00 0.00 34.93 3.01
23 24 2.736144 TGCACGAGAAGTACGGATTT 57.264 45.000 0.00 0.00 34.93 2.17
24 25 2.333926 TGCACGAGAAGTACGGATTTG 58.666 47.619 0.00 0.00 34.93 2.32
25 26 1.060698 GCACGAGAAGTACGGATTTGC 59.939 52.381 0.00 0.00 34.93 3.68
26 27 2.607187 CACGAGAAGTACGGATTTGCT 58.393 47.619 0.00 0.00 34.93 3.91
27 28 2.993899 CACGAGAAGTACGGATTTGCTT 59.006 45.455 0.00 0.00 34.93 3.91
28 29 3.060895 CACGAGAAGTACGGATTTGCTTC 59.939 47.826 0.00 0.00 38.01 3.86
29 30 2.603560 CGAGAAGTACGGATTTGCTTCC 59.396 50.000 0.00 0.00 38.37 3.46
35 36 4.201951 GGATTTGCTTCCGCGAGA 57.798 55.556 8.23 0.00 39.65 4.04
36 37 2.009888 GGATTTGCTTCCGCGAGAG 58.990 57.895 8.23 5.93 39.65 3.20
37 38 1.432270 GGATTTGCTTCCGCGAGAGG 61.432 60.000 8.23 4.88 39.65 3.69
52 53 4.443266 AGGCGCGCCTCTCAGAAC 62.443 66.667 45.60 18.66 44.43 3.01
56 57 3.760035 GCGCCTCTCAGAACGGGA 61.760 66.667 0.00 0.00 0.00 5.14
57 58 2.970639 CGCCTCTCAGAACGGGAA 59.029 61.111 0.00 0.00 0.00 3.97
58 59 1.292223 CGCCTCTCAGAACGGGAAA 59.708 57.895 0.00 0.00 0.00 3.13
59 60 0.320421 CGCCTCTCAGAACGGGAAAA 60.320 55.000 0.00 0.00 0.00 2.29
60 61 1.876416 CGCCTCTCAGAACGGGAAAAA 60.876 52.381 0.00 0.00 0.00 1.94
104 105 4.650754 ATGAGAGGCATGAATTTGCTTC 57.349 40.909 6.20 6.20 46.00 3.86
105 106 2.756760 TGAGAGGCATGAATTTGCTTCC 59.243 45.455 9.83 4.12 46.61 3.46
106 107 1.747355 AGAGGCATGAATTTGCTTCCG 59.253 47.619 9.83 0.00 46.61 4.30
107 108 0.174162 AGGCATGAATTTGCTTCCGC 59.826 50.000 0.00 0.00 42.38 5.54
108 109 0.108709 GGCATGAATTTGCTTCCGCA 60.109 50.000 0.00 0.00 46.24 5.69
117 118 3.458872 TGCTTCCGCAAGAGGTATG 57.541 52.632 0.00 0.00 44.62 2.39
118 119 0.901827 TGCTTCCGCAAGAGGTATGA 59.098 50.000 0.00 0.00 44.62 2.15
119 120 1.291132 GCTTCCGCAAGAGGTATGAC 58.709 55.000 0.00 0.00 43.02 3.06
120 121 1.941325 CTTCCGCAAGAGGTATGACC 58.059 55.000 0.00 0.00 43.02 4.02
121 122 1.207089 CTTCCGCAAGAGGTATGACCA 59.793 52.381 0.00 0.00 41.95 4.02
122 123 1.496060 TCCGCAAGAGGTATGACCAT 58.504 50.000 0.00 0.00 41.95 3.55
123 124 1.138859 TCCGCAAGAGGTATGACCATG 59.861 52.381 0.00 0.00 41.95 3.66
124 125 0.940126 CGCAAGAGGTATGACCATGC 59.060 55.000 9.67 9.67 41.95 4.06
125 126 1.312815 GCAAGAGGTATGACCATGCC 58.687 55.000 8.79 8.79 41.95 4.40
130 131 2.230664 GGTATGACCATGCCTCCCA 58.769 57.895 9.45 0.00 39.99 4.37
131 132 0.109342 GGTATGACCATGCCTCCCAG 59.891 60.000 9.45 0.00 39.99 4.45
132 133 1.131638 GTATGACCATGCCTCCCAGA 58.868 55.000 0.00 0.00 0.00 3.86
133 134 1.490490 GTATGACCATGCCTCCCAGAA 59.510 52.381 0.00 0.00 0.00 3.02
134 135 1.002069 ATGACCATGCCTCCCAGAAA 58.998 50.000 0.00 0.00 0.00 2.52
135 136 0.038166 TGACCATGCCTCCCAGAAAC 59.962 55.000 0.00 0.00 0.00 2.78
136 137 1.002134 ACCATGCCTCCCAGAAACG 60.002 57.895 0.00 0.00 0.00 3.60
137 138 1.299648 CCATGCCTCCCAGAAACGA 59.700 57.895 0.00 0.00 0.00 3.85
138 139 0.322456 CCATGCCTCCCAGAAACGAA 60.322 55.000 0.00 0.00 0.00 3.85
139 140 1.533625 CATGCCTCCCAGAAACGAAA 58.466 50.000 0.00 0.00 0.00 3.46
140 141 1.885887 CATGCCTCCCAGAAACGAAAA 59.114 47.619 0.00 0.00 0.00 2.29
141 142 2.060050 TGCCTCCCAGAAACGAAAAA 57.940 45.000 0.00 0.00 0.00 1.94
164 165 8.431020 AAAACGTGTTATCTTTTTATTCTCGC 57.569 30.769 0.00 0.00 0.00 5.03
165 166 5.782255 ACGTGTTATCTTTTTATTCTCGCG 58.218 37.500 0.00 0.00 0.00 5.87
166 167 5.574055 ACGTGTTATCTTTTTATTCTCGCGA 59.426 36.000 9.26 9.26 0.00 5.87
167 168 6.114288 CGTGTTATCTTTTTATTCTCGCGAG 58.886 40.000 30.03 30.03 0.00 5.03
168 169 6.020916 CGTGTTATCTTTTTATTCTCGCGAGA 60.021 38.462 33.84 33.84 39.12 4.04
178 179 3.973516 TCGCGAGAGGCACGTGTT 61.974 61.111 18.38 5.87 43.84 3.32
179 180 3.036084 CGCGAGAGGCACGTGTTT 61.036 61.111 18.38 5.46 43.84 2.83
180 181 2.551270 GCGAGAGGCACGTGTTTG 59.449 61.111 18.38 5.97 42.87 2.93
181 182 2.551270 CGAGAGGCACGTGTTTGC 59.449 61.111 18.38 1.69 42.18 3.68
182 183 1.956170 CGAGAGGCACGTGTTTGCT 60.956 57.895 18.38 9.57 42.56 3.91
183 184 1.498865 CGAGAGGCACGTGTTTGCTT 61.499 55.000 18.38 0.00 42.56 3.91
184 185 0.235926 GAGAGGCACGTGTTTGCTTC 59.764 55.000 18.38 8.58 46.31 3.86
185 186 1.166531 AGAGGCACGTGTTTGCTTCC 61.167 55.000 18.38 7.73 46.96 3.46
186 187 1.444119 GAGGCACGTGTTTGCTTCCA 61.444 55.000 18.38 0.00 41.54 3.53
187 188 1.299089 GGCACGTGTTTGCTTCCAC 60.299 57.895 18.38 0.00 42.56 4.02
193 194 0.868406 GTGTTTGCTTCCACGAGAGG 59.132 55.000 0.00 0.00 0.00 3.69
215 216 1.508088 GGCCATGCCTCTTGAAACG 59.492 57.895 0.00 0.00 46.69 3.60
216 217 0.960364 GGCCATGCCTCTTGAAACGA 60.960 55.000 0.00 0.00 46.69 3.85
217 218 0.881118 GCCATGCCTCTTGAAACGAA 59.119 50.000 0.00 0.00 0.00 3.85
218 219 1.269448 GCCATGCCTCTTGAAACGAAA 59.731 47.619 0.00 0.00 0.00 3.46
219 220 2.288152 GCCATGCCTCTTGAAACGAAAA 60.288 45.455 0.00 0.00 0.00 2.29
220 221 3.798548 GCCATGCCTCTTGAAACGAAAAA 60.799 43.478 0.00 0.00 0.00 1.94
221 222 3.983344 CCATGCCTCTTGAAACGAAAAAG 59.017 43.478 0.00 0.00 0.00 2.27
222 223 4.261572 CCATGCCTCTTGAAACGAAAAAGA 60.262 41.667 0.00 0.00 0.00 2.52
223 224 4.974368 TGCCTCTTGAAACGAAAAAGAA 57.026 36.364 0.00 0.00 29.93 2.52
224 225 5.317733 TGCCTCTTGAAACGAAAAAGAAA 57.682 34.783 0.00 0.00 29.93 2.52
225 226 5.901552 TGCCTCTTGAAACGAAAAAGAAAT 58.098 33.333 0.00 0.00 29.93 2.17
226 227 5.748152 TGCCTCTTGAAACGAAAAAGAAATG 59.252 36.000 0.00 0.00 29.93 2.32
227 228 5.748630 GCCTCTTGAAACGAAAAAGAAATGT 59.251 36.000 0.00 0.00 29.93 2.71
228 229 6.291796 GCCTCTTGAAACGAAAAAGAAATGTG 60.292 38.462 0.00 0.00 29.93 3.21
229 230 6.751888 CCTCTTGAAACGAAAAAGAAATGTGT 59.248 34.615 0.00 0.00 29.93 3.72
230 231 7.275560 CCTCTTGAAACGAAAAAGAAATGTGTT 59.724 33.333 0.00 0.00 29.93 3.32
231 232 8.527567 TCTTGAAACGAAAAAGAAATGTGTTT 57.472 26.923 0.00 0.00 0.00 2.83
232 233 8.983724 TCTTGAAACGAAAAAGAAATGTGTTTT 58.016 25.926 0.00 0.00 31.87 2.43
233 234 9.592720 CTTGAAACGAAAAAGAAATGTGTTTTT 57.407 25.926 3.24 3.24 41.49 1.94
258 259 9.710979 TTTTCTTACACGAGAAGTACAAAATTG 57.289 29.630 0.00 0.00 37.01 2.32
259 260 6.884187 TCTTACACGAGAAGTACAAAATTGC 58.116 36.000 0.00 0.00 0.00 3.56
260 261 6.704493 TCTTACACGAGAAGTACAAAATTGCT 59.296 34.615 0.00 0.00 0.00 3.91
261 262 5.751243 ACACGAGAAGTACAAAATTGCTT 57.249 34.783 0.00 0.00 0.00 3.91
262 263 5.748592 ACACGAGAAGTACAAAATTGCTTC 58.251 37.500 0.00 5.77 38.01 3.86
263 264 5.147162 CACGAGAAGTACAAAATTGCTTCC 58.853 41.667 0.00 3.07 38.37 3.46
264 265 4.819630 ACGAGAAGTACAAAATTGCTTCCA 59.180 37.500 0.00 0.00 38.37 3.53
265 266 5.147162 CGAGAAGTACAAAATTGCTTCCAC 58.853 41.667 0.00 5.06 38.37 4.02
266 267 5.108385 AGAAGTACAAAATTGCTTCCACG 57.892 39.130 0.00 0.00 38.37 4.94
267 268 4.819630 AGAAGTACAAAATTGCTTCCACGA 59.180 37.500 0.00 0.00 38.37 4.35
268 269 4.749245 AGTACAAAATTGCTTCCACGAG 57.251 40.909 0.00 0.00 0.00 4.18
269 270 4.385825 AGTACAAAATTGCTTCCACGAGA 58.614 39.130 0.00 0.00 0.00 4.04
270 271 3.904136 ACAAAATTGCTTCCACGAGAG 57.096 42.857 0.00 0.00 0.00 3.20
271 272 2.554032 ACAAAATTGCTTCCACGAGAGG 59.446 45.455 0.00 0.00 0.00 3.69
275 276 2.811317 GCTTCCACGAGAGGCACG 60.811 66.667 8.88 0.00 46.54 5.34
276 277 2.962569 CTTCCACGAGAGGCACGA 59.037 61.111 0.00 0.00 34.70 4.35
277 278 1.444553 CTTCCACGAGAGGCACGAC 60.445 63.158 0.00 0.00 34.70 4.34
278 279 2.820767 CTTCCACGAGAGGCACGACC 62.821 65.000 0.00 0.00 39.61 4.79
279 280 4.778415 CCACGAGAGGCACGACCG 62.778 72.222 0.00 0.00 46.52 4.79
280 281 4.039357 CACGAGAGGCACGACCGT 62.039 66.667 0.00 0.00 46.52 4.83
281 282 4.039357 ACGAGAGGCACGACCGTG 62.039 66.667 17.19 17.19 46.52 4.94
289 290 3.733960 CACGACCGTGCCTCTCGA 61.734 66.667 9.69 0.00 39.39 4.04
290 291 2.981909 ACGACCGTGCCTCTCGAA 60.982 61.111 0.00 0.00 0.00 3.71
291 292 2.257371 CGACCGTGCCTCTCGAAA 59.743 61.111 0.00 0.00 0.00 3.46
292 293 2.087009 CGACCGTGCCTCTCGAAAC 61.087 63.158 0.00 0.00 0.00 2.78
293 294 2.049433 ACCGTGCCTCTCGAAACG 60.049 61.111 0.00 0.00 35.85 3.60
294 295 2.257371 CCGTGCCTCTCGAAACGA 59.743 61.111 0.00 0.00 38.27 3.85
295 296 1.372499 CCGTGCCTCTCGAAACGAA 60.372 57.895 0.00 0.00 38.27 3.85
296 297 0.942410 CCGTGCCTCTCGAAACGAAA 60.942 55.000 0.00 0.00 38.27 3.46
297 298 0.856641 CGTGCCTCTCGAAACGAAAA 59.143 50.000 0.00 0.00 38.27 2.29
298 299 1.259507 CGTGCCTCTCGAAACGAAAAA 59.740 47.619 0.00 0.00 38.27 1.94
299 300 2.096417 CGTGCCTCTCGAAACGAAAAAT 60.096 45.455 0.00 0.00 38.27 1.82
300 301 3.122278 CGTGCCTCTCGAAACGAAAAATA 59.878 43.478 0.00 0.00 38.27 1.40
301 302 4.201685 CGTGCCTCTCGAAACGAAAAATAT 60.202 41.667 0.00 0.00 38.27 1.28
302 303 5.022021 GTGCCTCTCGAAACGAAAAATATG 58.978 41.667 0.00 0.00 34.74 1.78
303 304 4.693566 TGCCTCTCGAAACGAAAAATATGT 59.306 37.500 0.00 0.00 34.74 2.29
304 305 5.022021 GCCTCTCGAAACGAAAAATATGTG 58.978 41.667 0.00 0.00 34.74 3.21
305 306 5.390567 GCCTCTCGAAACGAAAAATATGTGT 60.391 40.000 0.00 0.00 34.74 3.72
306 307 6.599437 CCTCTCGAAACGAAAAATATGTGTT 58.401 36.000 0.00 0.00 34.74 3.32
307 308 7.075741 CCTCTCGAAACGAAAAATATGTGTTT 58.924 34.615 0.00 0.00 34.74 2.83
308 309 7.589954 CCTCTCGAAACGAAAAATATGTGTTTT 59.410 33.333 0.00 0.00 34.74 2.43
309 310 8.844441 TCTCGAAACGAAAAATATGTGTTTTT 57.156 26.923 0.00 0.68 42.29 1.94
331 332 6.826893 TTTTTCTTTTTCTTCCGCAAGATG 57.173 33.333 0.00 0.00 38.50 2.90
332 333 3.559238 TCTTTTTCTTCCGCAAGATGC 57.441 42.857 0.00 0.00 38.50 3.91
333 334 2.884012 TCTTTTTCTTCCGCAAGATGCA 59.116 40.909 2.99 0.00 45.36 3.96
334 335 2.704725 TTTTCTTCCGCAAGATGCAC 57.295 45.000 2.99 0.00 45.36 4.57
335 336 0.516877 TTTCTTCCGCAAGATGCACG 59.483 50.000 2.99 0.00 45.36 5.34
336 337 0.320334 TTCTTCCGCAAGATGCACGA 60.320 50.000 2.99 0.00 45.36 4.35
337 338 0.320334 TCTTCCGCAAGATGCACGAA 60.320 50.000 2.99 2.97 45.36 3.85
338 339 0.729116 CTTCCGCAAGATGCACGAAT 59.271 50.000 2.99 0.00 45.36 3.34
339 340 0.726827 TTCCGCAAGATGCACGAATC 59.273 50.000 2.99 0.00 45.36 2.52
340 341 0.108186 TCCGCAAGATGCACGAATCT 60.108 50.000 2.99 0.00 45.36 2.40
341 342 0.027194 CCGCAAGATGCACGAATCTG 59.973 55.000 2.99 0.00 45.36 2.90
342 343 0.588233 CGCAAGATGCACGAATCTGC 60.588 55.000 2.99 0.00 45.36 4.26
343 344 0.731417 GCAAGATGCACGAATCTGCT 59.269 50.000 0.00 0.00 44.26 4.24
344 345 1.131883 GCAAGATGCACGAATCTGCTT 59.868 47.619 0.00 0.00 44.26 3.91
345 346 2.415090 GCAAGATGCACGAATCTGCTTT 60.415 45.455 0.00 0.00 44.26 3.51
346 347 3.423571 CAAGATGCACGAATCTGCTTTC 58.576 45.455 0.00 0.00 36.99 2.62
413 414 2.314647 TTTTTCCGCGAGAGGCACG 61.315 57.895 8.23 0.00 43.84 5.34
415 416 4.717629 TTCCGCGAGAGGCACGTG 62.718 66.667 12.28 12.28 43.84 4.49
422 423 1.862806 GAGAGGCACGTGTTTGCTC 59.137 57.895 18.38 14.38 42.56 4.26
426 427 4.025401 GCACGTGTTTGCTCCCGG 62.025 66.667 18.38 0.00 39.59 5.73
428 429 4.636435 ACGTGTTTGCTCCCGGGG 62.636 66.667 23.50 13.02 0.00 5.73
457 458 0.716108 ATTTGCTTTCGCGAGAGACG 59.284 50.000 28.81 5.43 43.69 4.18
595 599 8.310122 ACCTATTAACACGGGATCTAGTTTTA 57.690 34.615 0.00 0.00 0.00 1.52
602 606 6.807789 ACACGGGATCTAGTTTTAAGATCTC 58.192 40.000 11.65 7.73 45.74 2.75
635 639 3.715618 TCAACGATGAAAACGATTCGG 57.284 42.857 11.29 0.00 34.88 4.30
653 674 3.153130 TCGGGATTTGAGCACATTTTGA 58.847 40.909 0.00 0.00 0.00 2.69
665 686 8.005662 TGAGCACATTTTGAATAAACGAATTG 57.994 30.769 0.00 0.00 0.00 2.32
687 709 6.436843 TGAGAAAGAAGGAAAAACTCACAC 57.563 37.500 0.00 0.00 0.00 3.82
693 715 1.063469 AGGAAAAACTCACACGTTGCG 59.937 47.619 0.00 0.00 0.00 4.85
695 717 2.286772 GGAAAAACTCACACGTTGCGAT 60.287 45.455 0.00 0.00 0.00 4.58
712 734 1.390123 CGATAAGTCACGCCACTTGTG 59.610 52.381 9.34 0.00 37.20 3.33
788 1251 1.078426 CGAAAAGCATCCCGGACCT 60.078 57.895 0.73 0.00 0.00 3.85
789 1252 1.090052 CGAAAAGCATCCCGGACCTC 61.090 60.000 0.73 0.00 0.00 3.85
790 1253 0.253327 GAAAAGCATCCCGGACCTCT 59.747 55.000 0.73 0.00 0.00 3.69
791 1254 0.253327 AAAAGCATCCCGGACCTCTC 59.747 55.000 0.73 0.00 0.00 3.20
792 1255 0.618968 AAAGCATCCCGGACCTCTCT 60.619 55.000 0.73 0.00 0.00 3.10
793 1256 1.045911 AAGCATCCCGGACCTCTCTC 61.046 60.000 0.73 0.00 0.00 3.20
794 1257 1.456705 GCATCCCGGACCTCTCTCT 60.457 63.158 0.73 0.00 0.00 3.10
803 1266 4.263550 CCCGGACCTCTCTCTATCTATGAA 60.264 50.000 0.73 0.00 0.00 2.57
805 1268 5.414454 CCGGACCTCTCTCTATCTATGAAAG 59.586 48.000 0.00 0.00 0.00 2.62
1057 1520 1.725665 CCGTTGCTATCCTCGACGA 59.274 57.895 0.00 0.00 42.31 4.20
1301 1773 4.918583 GTCTTCGATTCGGTATTCCTGATC 59.081 45.833 6.18 0.00 0.00 2.92
1311 1783 4.192317 GGTATTCCTGATCGCTGTTTTCT 58.808 43.478 0.00 0.00 0.00 2.52
1418 2691 4.158579 CCTTTCTCCTCTTATGTTTTGCCC 59.841 45.833 0.00 0.00 0.00 5.36
1468 2741 7.681939 TGGTTCTTTCCTGTACATTACAATC 57.318 36.000 0.00 0.00 38.38 2.67
1510 2783 9.442047 CTTAATTAGCTCCTTTTATCGATCCAT 57.558 33.333 0.00 0.00 0.00 3.41
1726 3021 9.809096 TTACTTCTGATACTTCATTCTGATGTC 57.191 33.333 0.00 0.00 36.38 3.06
1780 3623 2.684943 TCACTACAAGGACTTGGACCA 58.315 47.619 15.72 0.00 44.45 4.02
1801 3644 5.106157 ACCACAAAAGTTCTGTGAGTTCTTG 60.106 40.000 10.98 0.00 45.80 3.02
1813 3656 2.158623 TGAGTTCTTGTTGCCACATCCT 60.159 45.455 0.00 0.00 31.06 3.24
1912 3756 9.058174 TGTGATTTTCCTTTTTCTAATCGTGTA 57.942 29.630 0.00 0.00 0.00 2.90
2195 4204 2.352715 CGTGGAGCAGATGTACACTGAA 60.353 50.000 21.94 7.55 37.54 3.02
2427 4436 2.824936 TGTGGTGGATGCTGGTATTTTG 59.175 45.455 0.00 0.00 0.00 2.44
2487 4496 9.851686 TTAGTATGTTGGATCTTCTAATGCATT 57.148 29.630 17.56 17.56 0.00 3.56
2493 4502 7.011389 TGTTGGATCTTCTAATGCATTAAGACG 59.989 37.037 21.38 16.36 0.00 4.18
2630 4641 4.148174 GCGGTTCTGTTTTGTATCTTTTGC 59.852 41.667 0.00 0.00 0.00 3.68
2638 4649 9.462174 TCTGTTTTGTATCTTTTGCTAATTGTG 57.538 29.630 0.00 0.00 0.00 3.33
2666 4679 3.863041 AGTTCCTCTTACGATTGCCTTC 58.137 45.455 0.00 0.00 0.00 3.46
2715 4728 4.876107 ACTATGGTAACCAGAAGCAATTCG 59.124 41.667 0.00 0.00 36.75 3.34
2758 4771 0.775542 ACTTGGAAGTACCCCAACCC 59.224 55.000 11.94 0.00 38.64 4.11
2760 4773 1.357761 CTTGGAAGTACCCCAACCCAT 59.642 52.381 11.94 0.00 38.64 4.00
2826 4839 2.489938 TTGAGCTAATTTGGCGAGGT 57.510 45.000 0.00 0.00 34.52 3.85
2827 4840 1.737838 TGAGCTAATTTGGCGAGGTG 58.262 50.000 0.00 0.00 34.52 4.00
2828 4841 1.003118 TGAGCTAATTTGGCGAGGTGT 59.997 47.619 0.00 0.00 34.52 4.16
2829 4842 2.235155 TGAGCTAATTTGGCGAGGTGTA 59.765 45.455 0.00 0.00 34.52 2.90
2830 4843 3.267483 GAGCTAATTTGGCGAGGTGTAA 58.733 45.455 0.00 0.00 34.52 2.41
2831 4844 3.007635 AGCTAATTTGGCGAGGTGTAAC 58.992 45.455 0.00 0.00 34.52 2.50
2832 4845 4.178729 AGCTAATTTGGCGAGGTGTAACC 61.179 47.826 0.00 0.00 46.38 2.85
2857 4870 8.923270 CCAAATTTGGGATGTTATACATTAGGT 58.077 33.333 26.87 0.00 44.70 3.08
2891 4904 9.763465 GCATATCATATTTTATTGCATTTTGGC 57.237 29.630 0.00 0.00 0.00 4.52
2895 4908 9.616156 ATCATATTTTATTGCATTTTGGCTTGA 57.384 25.926 0.00 0.00 34.04 3.02
2896 4909 9.616156 TCATATTTTATTGCATTTTGGCTTGAT 57.384 25.926 0.00 0.00 34.04 2.57
2897 4910 9.872757 CATATTTTATTGCATTTTGGCTTGATC 57.127 29.630 0.00 0.00 34.04 2.92
2898 4911 6.740411 TTTTATTGCATTTTGGCTTGATCC 57.260 33.333 0.00 0.00 34.04 3.36
2899 4912 5.680594 TTATTGCATTTTGGCTTGATCCT 57.319 34.783 0.00 0.00 34.04 3.24
2900 4913 6.788598 TTATTGCATTTTGGCTTGATCCTA 57.211 33.333 0.00 0.00 34.04 2.94
2901 4914 4.724074 TTGCATTTTGGCTTGATCCTAG 57.276 40.909 0.00 0.00 34.04 3.02
2902 4915 3.966979 TGCATTTTGGCTTGATCCTAGA 58.033 40.909 0.00 0.00 34.04 2.43
2903 4916 4.343231 TGCATTTTGGCTTGATCCTAGAA 58.657 39.130 0.00 0.00 34.04 2.10
2904 4917 4.771577 TGCATTTTGGCTTGATCCTAGAAA 59.228 37.500 0.00 0.00 34.04 2.52
2905 4918 5.422970 TGCATTTTGGCTTGATCCTAGAAAT 59.577 36.000 0.00 0.00 34.04 2.17
2906 4919 6.070653 TGCATTTTGGCTTGATCCTAGAAATT 60.071 34.615 0.00 0.00 34.04 1.82
2907 4920 6.478016 GCATTTTGGCTTGATCCTAGAAATTC 59.522 38.462 0.00 0.00 0.00 2.17
2908 4921 7.632245 GCATTTTGGCTTGATCCTAGAAATTCT 60.632 37.037 0.00 0.00 0.00 2.40
2909 4922 8.906867 CATTTTGGCTTGATCCTAGAAATTCTA 58.093 33.333 2.44 2.44 0.00 2.10
2910 4923 7.865706 TTTGGCTTGATCCTAGAAATTCTAC 57.134 36.000 0.00 0.00 0.00 2.59
2911 4924 5.601662 TGGCTTGATCCTAGAAATTCTACG 58.398 41.667 0.00 0.00 0.00 3.51
2912 4925 4.449405 GGCTTGATCCTAGAAATTCTACGC 59.551 45.833 0.00 0.00 0.00 4.42
2913 4926 5.050490 GCTTGATCCTAGAAATTCTACGCA 58.950 41.667 0.00 0.00 0.00 5.24
2914 4927 5.523916 GCTTGATCCTAGAAATTCTACGCAA 59.476 40.000 0.00 1.48 0.00 4.85
2915 4928 6.510317 GCTTGATCCTAGAAATTCTACGCAAC 60.510 42.308 0.00 0.00 0.00 4.17
2916 4929 6.222038 TGATCCTAGAAATTCTACGCAACT 57.778 37.500 0.00 0.00 0.00 3.16
2917 4930 6.273825 TGATCCTAGAAATTCTACGCAACTC 58.726 40.000 0.00 0.00 0.00 3.01
2918 4931 5.654603 TCCTAGAAATTCTACGCAACTCA 57.345 39.130 0.00 0.00 0.00 3.41
2919 4932 5.408356 TCCTAGAAATTCTACGCAACTCAC 58.592 41.667 0.00 0.00 0.00 3.51
2920 4933 5.185249 TCCTAGAAATTCTACGCAACTCACT 59.815 40.000 0.00 0.00 0.00 3.41
2921 4934 5.517054 CCTAGAAATTCTACGCAACTCACTC 59.483 44.000 0.00 0.00 0.00 3.51
2922 4935 4.883083 AGAAATTCTACGCAACTCACTCA 58.117 39.130 0.00 0.00 0.00 3.41
2923 4936 5.482908 AGAAATTCTACGCAACTCACTCAT 58.517 37.500 0.00 0.00 0.00 2.90
2924 4937 5.349817 AGAAATTCTACGCAACTCACTCATG 59.650 40.000 0.00 0.00 0.00 3.07
2925 4938 2.654749 TCTACGCAACTCACTCATGG 57.345 50.000 0.00 0.00 0.00 3.66
2926 4939 2.167662 TCTACGCAACTCACTCATGGA 58.832 47.619 0.00 0.00 0.00 3.41
2927 4940 2.164422 TCTACGCAACTCACTCATGGAG 59.836 50.000 0.00 0.00 38.36 3.86
2928 4941 0.969149 ACGCAACTCACTCATGGAGA 59.031 50.000 4.68 0.00 36.26 3.71
2939 4952 2.575921 TCATGGAGAGAGTTGGGGAT 57.424 50.000 0.00 0.00 0.00 3.85
2940 4953 2.850833 TCATGGAGAGAGTTGGGGATT 58.149 47.619 0.00 0.00 0.00 3.01
2941 4954 3.192944 TCATGGAGAGAGTTGGGGATTT 58.807 45.455 0.00 0.00 0.00 2.17
2942 4955 3.593328 TCATGGAGAGAGTTGGGGATTTT 59.407 43.478 0.00 0.00 0.00 1.82
2943 4956 3.439857 TGGAGAGAGTTGGGGATTTTG 57.560 47.619 0.00 0.00 0.00 2.44
2944 4957 2.716424 TGGAGAGAGTTGGGGATTTTGT 59.284 45.455 0.00 0.00 0.00 2.83
2945 4958 3.140144 TGGAGAGAGTTGGGGATTTTGTT 59.860 43.478 0.00 0.00 0.00 2.83
2946 4959 4.352595 TGGAGAGAGTTGGGGATTTTGTTA 59.647 41.667 0.00 0.00 0.00 2.41
2947 4960 5.163034 TGGAGAGAGTTGGGGATTTTGTTAA 60.163 40.000 0.00 0.00 0.00 2.01
2948 4961 5.183331 GGAGAGAGTTGGGGATTTTGTTAAC 59.817 44.000 0.00 0.00 0.00 2.01
2949 4962 5.953571 AGAGAGTTGGGGATTTTGTTAACT 58.046 37.500 7.22 0.00 0.00 2.24
2950 4963 6.373759 AGAGAGTTGGGGATTTTGTTAACTT 58.626 36.000 7.22 0.00 0.00 2.66
2951 4964 6.490381 AGAGAGTTGGGGATTTTGTTAACTTC 59.510 38.462 7.22 0.00 0.00 3.01
2952 4965 6.133356 AGAGTTGGGGATTTTGTTAACTTCA 58.867 36.000 7.22 0.00 0.00 3.02
2953 4966 6.782494 AGAGTTGGGGATTTTGTTAACTTCAT 59.218 34.615 7.22 0.00 0.00 2.57
2954 4967 7.947890 AGAGTTGGGGATTTTGTTAACTTCATA 59.052 33.333 7.22 0.00 0.00 2.15
2955 4968 8.664669 AGTTGGGGATTTTGTTAACTTCATAT 57.335 30.769 7.22 0.00 0.00 1.78
2956 4969 9.100197 AGTTGGGGATTTTGTTAACTTCATATT 57.900 29.630 7.22 0.00 0.00 1.28
2957 4970 9.719355 GTTGGGGATTTTGTTAACTTCATATTT 57.281 29.630 7.22 0.00 0.00 1.40
2958 4971 9.717942 TTGGGGATTTTGTTAACTTCATATTTG 57.282 29.630 7.22 0.00 0.00 2.32
2959 4972 9.094578 TGGGGATTTTGTTAACTTCATATTTGA 57.905 29.630 7.22 0.00 0.00 2.69
2960 4973 9.586435 GGGGATTTTGTTAACTTCATATTTGAG 57.414 33.333 7.22 0.00 32.27 3.02
2984 4997 9.586435 GAGTTTTCTCAAATTTTGAAAAGAGGA 57.414 29.630 20.30 3.40 45.53 3.71
2992 5005 9.275398 TCAAATTTTGAAAAGAGGATCATTTGG 57.725 29.630 9.36 0.00 35.99 3.28
2993 5006 9.059260 CAAATTTTGAAAAGAGGATCATTTGGT 57.941 29.630 2.88 0.00 35.99 3.67
2994 5007 9.631257 AAATTTTGAAAAGAGGATCATTTGGTT 57.369 25.926 0.00 0.00 35.99 3.67
2995 5008 9.631257 AATTTTGAAAAGAGGATCATTTGGTTT 57.369 25.926 0.00 0.00 35.99 3.27
2996 5009 9.631257 ATTTTGAAAAGAGGATCATTTGGTTTT 57.369 25.926 0.00 0.00 35.99 2.43
2997 5010 8.436046 TTTGAAAAGAGGATCATTTGGTTTTG 57.564 30.769 0.00 0.00 35.99 2.44
2998 5011 7.358770 TGAAAAGAGGATCATTTGGTTTTGA 57.641 32.000 0.00 0.00 35.99 2.69
2999 5012 7.965718 TGAAAAGAGGATCATTTGGTTTTGAT 58.034 30.769 0.00 0.00 35.99 2.57
3000 5013 8.431222 TGAAAAGAGGATCATTTGGTTTTGATT 58.569 29.630 0.00 0.00 35.99 2.57
3001 5014 9.927668 GAAAAGAGGATCATTTGGTTTTGATTA 57.072 29.630 0.00 0.00 35.99 1.75
3032 5045 8.924511 AAAATGACTTCTCCAAGTTAGATGAA 57.075 30.769 0.00 0.00 43.37 2.57
3033 5046 8.924511 AAATGACTTCTCCAAGTTAGATGAAA 57.075 30.769 0.00 0.00 43.37 2.69
3034 5047 9.525826 AAATGACTTCTCCAAGTTAGATGAAAT 57.474 29.630 0.00 0.00 43.37 2.17
3100 5113 8.934825 TGGATTTTATTGCATTAGAAAAGTTGC 58.065 29.630 0.00 0.00 35.67 4.17
3101 5114 8.934825 GGATTTTATTGCATTAGAAAAGTTGCA 58.065 29.630 0.00 0.00 42.90 4.08
3102 5115 9.745323 GATTTTATTGCATTAGAAAAGTTGCAC 57.255 29.630 0.00 0.00 44.16 4.57
3103 5116 6.926280 TTATTGCATTAGAAAAGTTGCACG 57.074 33.333 0.00 0.00 44.16 5.34
3104 5117 3.980646 TGCATTAGAAAAGTTGCACGT 57.019 38.095 0.00 0.00 39.98 4.49
3105 5118 4.300189 TGCATTAGAAAAGTTGCACGTT 57.700 36.364 0.00 0.00 39.98 3.99
3106 5119 4.677584 TGCATTAGAAAAGTTGCACGTTT 58.322 34.783 0.00 0.00 39.98 3.60
3107 5120 5.105752 TGCATTAGAAAAGTTGCACGTTTT 58.894 33.333 5.13 5.13 39.98 2.43
3108 5121 5.578727 TGCATTAGAAAAGTTGCACGTTTTT 59.421 32.000 6.64 4.63 39.98 1.94
3109 5122 6.752351 TGCATTAGAAAAGTTGCACGTTTTTA 59.248 30.769 6.64 1.91 39.98 1.52
3110 5123 7.275779 TGCATTAGAAAAGTTGCACGTTTTTAA 59.724 29.630 6.64 8.83 39.98 1.52
3111 5124 8.111224 GCATTAGAAAAGTTGCACGTTTTTAAA 58.889 29.630 6.64 5.40 32.97 1.52
3115 5128 8.873242 AGAAAAGTTGCACGTTTTTAAATTTG 57.127 26.923 0.00 0.00 30.27 2.32
3116 5129 7.480229 AGAAAAGTTGCACGTTTTTAAATTTGC 59.520 29.630 0.00 0.00 30.27 3.68
3117 5130 5.786401 AGTTGCACGTTTTTAAATTTGCA 57.214 30.435 0.00 8.60 37.00 4.08
3118 5131 6.356757 AGTTGCACGTTTTTAAATTTGCAT 57.643 29.167 0.00 0.42 37.93 3.96
3119 5132 6.780127 AGTTGCACGTTTTTAAATTTGCATT 58.220 28.000 0.00 4.59 37.93 3.56
3120 5133 7.247019 AGTTGCACGTTTTTAAATTTGCATTT 58.753 26.923 0.00 0.00 37.93 2.32
3121 5134 7.752686 AGTTGCACGTTTTTAAATTTGCATTTT 59.247 25.926 0.00 0.00 37.93 1.82
3122 5135 9.000018 GTTGCACGTTTTTAAATTTGCATTTTA 58.000 25.926 0.00 0.00 37.93 1.52
3123 5136 8.759260 TGCACGTTTTTAAATTTGCATTTTAG 57.241 26.923 0.00 0.00 35.15 1.85
3124 5137 8.391106 TGCACGTTTTTAAATTTGCATTTTAGT 58.609 25.926 0.00 0.00 35.15 2.24
3125 5138 8.668934 GCACGTTTTTAAATTTGCATTTTAGTG 58.331 29.630 0.00 1.66 34.29 2.74
3126 5139 8.668934 CACGTTTTTAAATTTGCATTTTAGTGC 58.331 29.630 0.00 0.00 45.25 4.40
3127 5140 7.853437 ACGTTTTTAAATTTGCATTTTAGTGCC 59.147 29.630 0.00 0.00 44.43 5.01
3128 5141 7.852945 CGTTTTTAAATTTGCATTTTAGTGCCA 59.147 29.630 0.00 0.00 44.43 4.92
3129 5142 9.508567 GTTTTTAAATTTGCATTTTAGTGCCAA 57.491 25.926 0.00 0.00 44.43 4.52
3130 5143 9.727627 TTTTTAAATTTGCATTTTAGTGCCAAG 57.272 25.926 0.00 0.00 44.43 3.61
3131 5144 8.668510 TTTAAATTTGCATTTTAGTGCCAAGA 57.331 26.923 0.00 0.00 44.43 3.02
3132 5145 8.668510 TTAAATTTGCATTTTAGTGCCAAGAA 57.331 26.923 0.00 0.00 44.43 2.52
3133 5146 7.565323 AAATTTGCATTTTAGTGCCAAGAAA 57.435 28.000 0.00 0.00 44.43 2.52
3134 5147 7.565323 AATTTGCATTTTAGTGCCAAGAAAA 57.435 28.000 0.00 0.00 44.43 2.29
3135 5148 7.748691 ATTTGCATTTTAGTGCCAAGAAAAT 57.251 28.000 0.00 0.00 44.43 1.82
3136 5149 6.542574 TTGCATTTTAGTGCCAAGAAAATG 57.457 33.333 15.79 15.79 46.30 2.32
3137 5150 5.609423 TGCATTTTAGTGCCAAGAAAATGT 58.391 33.333 18.90 0.00 45.74 2.71
3138 5151 6.054295 TGCATTTTAGTGCCAAGAAAATGTT 58.946 32.000 18.90 0.00 45.74 2.71
3139 5152 6.202570 TGCATTTTAGTGCCAAGAAAATGTTC 59.797 34.615 18.90 9.60 45.74 3.18
3140 5153 6.202570 GCATTTTAGTGCCAAGAAAATGTTCA 59.797 34.615 18.90 0.00 45.74 3.18
3141 5154 7.095102 GCATTTTAGTGCCAAGAAAATGTTCAT 60.095 33.333 18.90 0.00 45.74 2.57
3142 5155 8.776470 CATTTTAGTGCCAAGAAAATGTTCATT 58.224 29.630 13.39 0.00 42.00 2.57
3143 5156 8.729805 TTTTAGTGCCAAGAAAATGTTCATTT 57.270 26.923 0.00 5.12 36.09 2.32
3144 5157 8.729805 TTTAGTGCCAAGAAAATGTTCATTTT 57.270 26.923 19.17 19.17 36.09 1.82
3145 5158 6.607735 AGTGCCAAGAAAATGTTCATTTTG 57.392 33.333 22.60 12.49 36.09 2.44
3146 5159 6.114767 AGTGCCAAGAAAATGTTCATTTTGT 58.885 32.000 22.60 17.60 36.09 2.83
3147 5160 6.598850 AGTGCCAAGAAAATGTTCATTTTGTT 59.401 30.769 22.60 21.25 37.45 2.83
3148 5161 6.906678 GTGCCAAGAAAATGTTCATTTTGTTC 59.093 34.615 22.60 15.50 35.64 3.18
3149 5162 6.822676 TGCCAAGAAAATGTTCATTTTGTTCT 59.177 30.769 22.60 13.76 35.64 3.01
3150 5163 7.984050 TGCCAAGAAAATGTTCATTTTGTTCTA 59.016 29.630 22.60 12.73 35.64 2.10
3151 5164 8.825745 GCCAAGAAAATGTTCATTTTGTTCTAA 58.174 29.630 22.60 0.00 35.64 2.10
3185 5198 5.977171 AGACGGTAAAAATTTGTTTTGGC 57.023 34.783 0.00 0.00 0.00 4.52
3186 5199 5.420409 AGACGGTAAAAATTTGTTTTGGCA 58.580 33.333 0.00 0.00 0.00 4.92
3187 5200 6.052360 AGACGGTAAAAATTTGTTTTGGCAT 58.948 32.000 0.00 0.00 0.00 4.40
3188 5201 6.540551 AGACGGTAAAAATTTGTTTTGGCATT 59.459 30.769 0.00 0.00 0.00 3.56
3189 5202 7.066404 AGACGGTAAAAATTTGTTTTGGCATTT 59.934 29.630 0.00 0.00 0.00 2.32
3190 5203 7.539436 ACGGTAAAAATTTGTTTTGGCATTTT 58.461 26.923 0.00 0.00 31.57 1.82
3191 5204 8.029522 ACGGTAAAAATTTGTTTTGGCATTTTT 58.970 25.926 9.55 9.55 40.34 1.94
3192 5205 9.503427 CGGTAAAAATTTGTTTTGGCATTTTTA 57.497 25.926 8.01 8.01 38.87 1.52
3230 5243 8.550710 TTTTTCTAGGATTTATTTTCGTCGGA 57.449 30.769 0.00 0.00 0.00 4.55
3231 5244 8.550710 TTTTCTAGGATTTATTTTCGTCGGAA 57.449 30.769 0.00 0.00 0.00 4.30
3232 5245 7.529880 TTCTAGGATTTATTTTCGTCGGAAC 57.470 36.000 0.00 0.00 0.00 3.62
3262 5275 1.949257 AAAAAGAAGTCAGCGCCCG 59.051 52.632 2.29 0.00 0.00 6.13
3263 5276 0.534203 AAAAAGAAGTCAGCGCCCGA 60.534 50.000 2.29 0.00 0.00 5.14
3264 5277 1.228657 AAAAGAAGTCAGCGCCCGAC 61.229 55.000 17.46 17.46 0.00 4.79
3265 5278 2.100879 AAAGAAGTCAGCGCCCGACT 62.101 55.000 21.03 21.03 45.62 4.18
3266 5279 2.771763 AAGAAGTCAGCGCCCGACTG 62.772 60.000 25.65 8.92 42.90 3.51
3267 5280 4.379243 AAGTCAGCGCCCGACTGG 62.379 66.667 25.65 0.00 42.90 4.00
3332 5345 3.827898 CGACTCCGGGAGACTGCC 61.828 72.222 30.13 2.19 33.32 4.85
3359 5372 2.283894 GGTTGCCCCTCCCCAAAG 60.284 66.667 0.00 0.00 0.00 2.77
3360 5373 2.997315 GTTGCCCCTCCCCAAAGC 60.997 66.667 0.00 0.00 0.00 3.51
3361 5374 4.315264 TTGCCCCTCCCCAAAGCC 62.315 66.667 0.00 0.00 0.00 4.35
3364 5377 4.426313 CCCCTCCCCAAAGCCGAC 62.426 72.222 0.00 0.00 0.00 4.79
3365 5378 4.426313 CCCTCCCCAAAGCCGACC 62.426 72.222 0.00 0.00 0.00 4.79
3366 5379 3.330720 CCTCCCCAAAGCCGACCT 61.331 66.667 0.00 0.00 0.00 3.85
3367 5380 2.269241 CTCCCCAAAGCCGACCTC 59.731 66.667 0.00 0.00 0.00 3.85
3368 5381 3.665675 CTCCCCAAAGCCGACCTCG 62.666 68.421 0.00 0.00 39.44 4.63
3384 5397 4.492303 CGCCCCCTCCCCCTCTTA 62.492 72.222 0.00 0.00 0.00 2.10
3385 5398 2.043941 GCCCCCTCCCCCTCTTAA 59.956 66.667 0.00 0.00 0.00 1.85
3386 5399 1.621514 GCCCCCTCCCCCTCTTAAA 60.622 63.158 0.00 0.00 0.00 1.52
3387 5400 0.999493 GCCCCCTCCCCCTCTTAAAT 60.999 60.000 0.00 0.00 0.00 1.40
3388 5401 1.701238 GCCCCCTCCCCCTCTTAAATA 60.701 57.143 0.00 0.00 0.00 1.40
3389 5402 2.063425 CCCCCTCCCCCTCTTAAATAC 58.937 57.143 0.00 0.00 0.00 1.89
3390 5403 2.063425 CCCCTCCCCCTCTTAAATACC 58.937 57.143 0.00 0.00 0.00 2.73
3391 5404 2.063425 CCCTCCCCCTCTTAAATACCC 58.937 57.143 0.00 0.00 0.00 3.69
3392 5405 1.697982 CCTCCCCCTCTTAAATACCCG 59.302 57.143 0.00 0.00 0.00 5.28
3393 5406 1.071857 CTCCCCCTCTTAAATACCCGC 59.928 57.143 0.00 0.00 0.00 6.13
3394 5407 0.109913 CCCCCTCTTAAATACCCGCC 59.890 60.000 0.00 0.00 0.00 6.13
3395 5408 0.250166 CCCCTCTTAAATACCCGCCG 60.250 60.000 0.00 0.00 0.00 6.46
3396 5409 0.883370 CCCTCTTAAATACCCGCCGC 60.883 60.000 0.00 0.00 0.00 6.53
3397 5410 0.883370 CCTCTTAAATACCCGCCGCC 60.883 60.000 0.00 0.00 0.00 6.13
3398 5411 1.219522 CTCTTAAATACCCGCCGCCG 61.220 60.000 0.00 0.00 0.00 6.46
3399 5412 2.888998 CTTAAATACCCGCCGCCGC 61.889 63.158 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.610038 TCCGTACTTCTCGTGCAAGAA 59.390 47.619 3.39 2.11 34.22 2.52
2 3 2.279582 ATCCGTACTTCTCGTGCAAG 57.720 50.000 0.00 0.00 0.00 4.01
4 5 2.333926 CAAATCCGTACTTCTCGTGCA 58.666 47.619 0.00 0.00 0.00 4.57
5 6 1.060698 GCAAATCCGTACTTCTCGTGC 59.939 52.381 0.00 0.00 0.00 5.34
6 7 2.607187 AGCAAATCCGTACTTCTCGTG 58.393 47.619 0.00 0.00 0.00 4.35
7 8 3.251571 GAAGCAAATCCGTACTTCTCGT 58.748 45.455 0.00 0.00 36.45 4.18
8 9 2.603560 GGAAGCAAATCCGTACTTCTCG 59.396 50.000 0.00 0.00 38.81 4.04
39 40 2.781595 TTTCCCGTTCTGAGAGGCGC 62.782 60.000 0.00 0.00 0.00 6.53
40 41 0.320421 TTTTCCCGTTCTGAGAGGCG 60.320 55.000 2.31 2.31 0.00 5.52
41 42 1.892209 TTTTTCCCGTTCTGAGAGGC 58.108 50.000 0.00 0.00 0.00 4.70
101 102 1.207089 TGGTCATACCTCTTGCGGAAG 59.793 52.381 10.87 10.87 39.58 3.46
102 103 1.271856 TGGTCATACCTCTTGCGGAA 58.728 50.000 0.00 0.00 39.58 4.30
103 104 1.138859 CATGGTCATACCTCTTGCGGA 59.861 52.381 0.00 0.00 39.58 5.54
104 105 1.586422 CATGGTCATACCTCTTGCGG 58.414 55.000 0.00 0.00 39.58 5.69
105 106 0.940126 GCATGGTCATACCTCTTGCG 59.060 55.000 0.00 0.00 39.58 4.85
106 107 1.133976 AGGCATGGTCATACCTCTTGC 60.134 52.381 0.00 9.36 39.58 4.01
107 108 2.486191 GGAGGCATGGTCATACCTCTTG 60.486 54.545 22.52 3.84 46.18 3.02
108 109 1.771255 GGAGGCATGGTCATACCTCTT 59.229 52.381 22.52 0.00 46.18 2.85
109 110 1.428869 GGAGGCATGGTCATACCTCT 58.571 55.000 22.52 0.32 46.18 3.69
110 111 0.398318 GGGAGGCATGGTCATACCTC 59.602 60.000 17.73 17.73 46.20 3.85
111 112 0.327480 TGGGAGGCATGGTCATACCT 60.327 55.000 2.53 2.53 39.58 3.08
112 113 0.109342 CTGGGAGGCATGGTCATACC 59.891 60.000 0.00 0.00 39.22 2.73
113 114 1.131638 TCTGGGAGGCATGGTCATAC 58.868 55.000 0.00 0.00 0.00 2.39
114 115 1.891933 TTCTGGGAGGCATGGTCATA 58.108 50.000 0.00 0.00 0.00 2.15
115 116 1.002069 TTTCTGGGAGGCATGGTCAT 58.998 50.000 0.00 0.00 0.00 3.06
116 117 0.038166 GTTTCTGGGAGGCATGGTCA 59.962 55.000 0.00 0.00 0.00 4.02
117 118 1.026718 CGTTTCTGGGAGGCATGGTC 61.027 60.000 0.00 0.00 0.00 4.02
118 119 1.002134 CGTTTCTGGGAGGCATGGT 60.002 57.895 0.00 0.00 0.00 3.55
119 120 0.322456 TTCGTTTCTGGGAGGCATGG 60.322 55.000 0.00 0.00 0.00 3.66
120 121 1.533625 TTTCGTTTCTGGGAGGCATG 58.466 50.000 0.00 0.00 0.00 4.06
121 122 2.286365 TTTTCGTTTCTGGGAGGCAT 57.714 45.000 0.00 0.00 0.00 4.40
122 123 2.060050 TTTTTCGTTTCTGGGAGGCA 57.940 45.000 0.00 0.00 0.00 4.75
138 139 8.898792 GCGAGAATAAAAAGATAACACGTTTTT 58.101 29.630 0.00 0.00 37.23 1.94
139 140 7.267600 CGCGAGAATAAAAAGATAACACGTTTT 59.732 33.333 0.00 0.00 36.08 2.43
140 141 6.735063 CGCGAGAATAAAAAGATAACACGTTT 59.265 34.615 0.00 0.00 0.00 3.60
141 142 6.089820 TCGCGAGAATAAAAAGATAACACGTT 59.910 34.615 3.71 0.00 37.03 3.99
142 143 5.574055 TCGCGAGAATAAAAAGATAACACGT 59.426 36.000 3.71 0.00 37.03 4.49
143 144 6.016423 TCGCGAGAATAAAAAGATAACACG 57.984 37.500 3.71 0.00 37.03 4.49
144 145 7.218145 TCTCGCGAGAATAAAAAGATAACAC 57.782 36.000 35.16 0.00 41.32 3.32
145 146 6.475727 CCTCTCGCGAGAATAAAAAGATAACA 59.524 38.462 35.84 11.15 41.32 2.41
146 147 6.562455 GCCTCTCGCGAGAATAAAAAGATAAC 60.562 42.308 35.84 11.55 41.32 1.89
147 148 5.462398 GCCTCTCGCGAGAATAAAAAGATAA 59.538 40.000 35.84 12.23 41.32 1.75
148 149 4.982916 GCCTCTCGCGAGAATAAAAAGATA 59.017 41.667 35.84 12.43 41.32 1.98
149 150 3.804873 GCCTCTCGCGAGAATAAAAAGAT 59.195 43.478 35.84 0.00 41.32 2.40
150 151 3.187700 GCCTCTCGCGAGAATAAAAAGA 58.812 45.455 35.84 13.89 41.32 2.52
151 152 2.930040 TGCCTCTCGCGAGAATAAAAAG 59.070 45.455 35.84 23.03 42.08 2.27
152 153 2.671396 GTGCCTCTCGCGAGAATAAAAA 59.329 45.455 35.84 17.53 42.08 1.94
153 154 2.268298 GTGCCTCTCGCGAGAATAAAA 58.732 47.619 35.84 18.84 42.08 1.52
154 155 1.922570 GTGCCTCTCGCGAGAATAAA 58.077 50.000 35.84 20.50 42.08 1.40
155 156 3.642901 GTGCCTCTCGCGAGAATAA 57.357 52.632 35.84 22.18 42.08 1.40
163 164 2.551270 CAAACACGTGCCTCTCGC 59.449 61.111 17.22 0.00 38.31 5.03
164 165 1.498865 AAGCAAACACGTGCCTCTCG 61.499 55.000 17.22 0.00 46.14 4.04
165 166 0.235926 GAAGCAAACACGTGCCTCTC 59.764 55.000 17.22 1.25 46.14 3.20
166 167 1.166531 GGAAGCAAACACGTGCCTCT 61.167 55.000 17.22 4.89 46.14 3.69
167 168 1.282875 GGAAGCAAACACGTGCCTC 59.717 57.895 17.22 0.08 46.14 4.70
168 169 1.453015 TGGAAGCAAACACGTGCCT 60.453 52.632 17.22 4.05 46.14 4.75
169 170 1.299089 GTGGAAGCAAACACGTGCC 60.299 57.895 17.22 7.35 46.14 5.01
170 171 4.302154 GTGGAAGCAAACACGTGC 57.698 55.556 17.22 0.51 45.28 5.34
174 175 0.868406 CCTCTCGTGGAAGCAAACAC 59.132 55.000 0.00 0.00 0.00 3.32
175 176 0.884704 GCCTCTCGTGGAAGCAAACA 60.885 55.000 0.00 0.00 32.03 2.83
176 177 1.869690 GCCTCTCGTGGAAGCAAAC 59.130 57.895 0.00 0.00 32.03 2.93
177 178 1.667830 CGCCTCTCGTGGAAGCAAA 60.668 57.895 0.00 0.00 31.22 3.68
178 179 2.048222 CGCCTCTCGTGGAAGCAA 60.048 61.111 0.00 0.00 31.22 3.91
179 180 4.742201 GCGCCTCTCGTGGAAGCA 62.742 66.667 0.00 0.00 41.07 3.91
198 199 0.881118 TTCGTTTCAAGAGGCATGGC 59.119 50.000 12.14 12.14 0.00 4.40
199 200 3.641437 TTTTCGTTTCAAGAGGCATGG 57.359 42.857 0.00 0.00 0.00 3.66
200 201 4.858935 TCTTTTTCGTTTCAAGAGGCATG 58.141 39.130 0.00 0.00 0.00 4.06
201 202 5.514274 TTCTTTTTCGTTTCAAGAGGCAT 57.486 34.783 0.00 0.00 0.00 4.40
202 203 4.974368 TTCTTTTTCGTTTCAAGAGGCA 57.026 36.364 0.00 0.00 0.00 4.75
203 204 5.748630 ACATTTCTTTTTCGTTTCAAGAGGC 59.251 36.000 0.00 0.00 0.00 4.70
204 205 6.751888 ACACATTTCTTTTTCGTTTCAAGAGG 59.248 34.615 0.00 0.00 0.00 3.69
205 206 7.740519 ACACATTTCTTTTTCGTTTCAAGAG 57.259 32.000 0.00 0.00 0.00 2.85
206 207 8.527567 AAACACATTTCTTTTTCGTTTCAAGA 57.472 26.923 0.00 0.00 0.00 3.02
207 208 9.592720 AAAAACACATTTCTTTTTCGTTTCAAG 57.407 25.926 0.00 0.00 0.00 3.02
232 233 9.710979 CAATTTTGTACTTCTCGTGTAAGAAAA 57.289 29.630 0.00 0.00 34.95 2.29
233 234 7.853929 GCAATTTTGTACTTCTCGTGTAAGAAA 59.146 33.333 0.00 0.00 34.95 2.52
234 235 7.225931 AGCAATTTTGTACTTCTCGTGTAAGAA 59.774 33.333 0.00 0.00 34.22 2.52
235 236 6.704493 AGCAATTTTGTACTTCTCGTGTAAGA 59.296 34.615 0.00 0.00 0.00 2.10
236 237 6.888430 AGCAATTTTGTACTTCTCGTGTAAG 58.112 36.000 0.00 0.00 0.00 2.34
237 238 6.854496 AGCAATTTTGTACTTCTCGTGTAA 57.146 33.333 0.00 0.00 0.00 2.41
238 239 6.073440 GGAAGCAATTTTGTACTTCTCGTGTA 60.073 38.462 0.00 0.00 38.81 2.90
239 240 5.277828 GGAAGCAATTTTGTACTTCTCGTGT 60.278 40.000 0.00 0.00 38.81 4.49
240 241 5.147162 GGAAGCAATTTTGTACTTCTCGTG 58.853 41.667 0.00 0.00 38.81 4.35
241 242 4.819630 TGGAAGCAATTTTGTACTTCTCGT 59.180 37.500 0.00 0.00 38.81 4.18
242 243 5.147162 GTGGAAGCAATTTTGTACTTCTCG 58.853 41.667 0.00 0.00 38.81 4.04
243 244 5.049680 TCGTGGAAGCAATTTTGTACTTCTC 60.050 40.000 0.00 0.00 38.81 2.87
244 245 4.819630 TCGTGGAAGCAATTTTGTACTTCT 59.180 37.500 0.00 0.00 38.81 2.85
245 246 5.049680 TCTCGTGGAAGCAATTTTGTACTTC 60.050 40.000 0.00 0.00 38.22 3.01
246 247 4.819630 TCTCGTGGAAGCAATTTTGTACTT 59.180 37.500 0.00 0.00 0.00 2.24
247 248 4.385825 TCTCGTGGAAGCAATTTTGTACT 58.614 39.130 0.00 0.00 0.00 2.73
248 249 4.378459 CCTCTCGTGGAAGCAATTTTGTAC 60.378 45.833 0.00 0.00 0.00 2.90
249 250 3.751175 CCTCTCGTGGAAGCAATTTTGTA 59.249 43.478 0.00 0.00 0.00 2.41
250 251 2.554032 CCTCTCGTGGAAGCAATTTTGT 59.446 45.455 0.00 0.00 0.00 2.83
251 252 2.669391 GCCTCTCGTGGAAGCAATTTTG 60.669 50.000 0.00 0.00 32.03 2.44
252 253 1.541588 GCCTCTCGTGGAAGCAATTTT 59.458 47.619 0.00 0.00 32.03 1.82
253 254 1.168714 GCCTCTCGTGGAAGCAATTT 58.831 50.000 0.00 0.00 32.03 1.82
254 255 0.036732 TGCCTCTCGTGGAAGCAATT 59.963 50.000 2.93 0.00 38.32 2.32
255 256 0.674895 GTGCCTCTCGTGGAAGCAAT 60.675 55.000 6.14 0.00 42.24 3.56
256 257 1.301716 GTGCCTCTCGTGGAAGCAA 60.302 57.895 6.14 0.00 42.24 3.91
257 258 2.343758 GTGCCTCTCGTGGAAGCA 59.656 61.111 0.00 1.60 38.87 3.91
258 259 2.811317 CGTGCCTCTCGTGGAAGC 60.811 66.667 0.00 0.00 32.35 3.86
259 260 1.444553 GTCGTGCCTCTCGTGGAAG 60.445 63.158 0.00 0.00 0.00 3.46
260 261 2.649034 GTCGTGCCTCTCGTGGAA 59.351 61.111 0.00 0.00 0.00 3.53
261 262 3.371063 GGTCGTGCCTCTCGTGGA 61.371 66.667 0.00 0.00 0.00 4.02
262 263 4.778415 CGGTCGTGCCTCTCGTGG 62.778 72.222 0.00 0.00 34.25 4.94
263 264 4.039357 ACGGTCGTGCCTCTCGTG 62.039 66.667 0.00 0.00 32.60 4.35
264 265 4.039357 CACGGTCGTGCCTCTCGT 62.039 66.667 10.59 0.00 39.39 4.18
273 274 2.558286 TTTCGAGAGGCACGGTCGT 61.558 57.895 0.00 0.00 39.03 4.34
274 275 2.087009 GTTTCGAGAGGCACGGTCG 61.087 63.158 0.00 0.00 39.25 4.79
275 276 2.087009 CGTTTCGAGAGGCACGGTC 61.087 63.158 0.00 0.00 34.60 4.79
276 277 2.049433 CGTTTCGAGAGGCACGGT 60.049 61.111 0.00 0.00 34.60 4.83
277 278 0.942410 TTTCGTTTCGAGAGGCACGG 60.942 55.000 0.00 0.00 37.14 4.94
278 279 0.856641 TTTTCGTTTCGAGAGGCACG 59.143 50.000 0.00 0.00 37.14 5.34
279 280 3.537793 ATTTTTCGTTTCGAGAGGCAC 57.462 42.857 0.00 0.00 37.14 5.01
280 281 4.693566 ACATATTTTTCGTTTCGAGAGGCA 59.306 37.500 0.00 0.00 37.14 4.75
281 282 5.022021 CACATATTTTTCGTTTCGAGAGGC 58.978 41.667 0.00 0.00 37.14 4.70
282 283 6.165659 ACACATATTTTTCGTTTCGAGAGG 57.834 37.500 0.00 0.00 37.14 3.69
283 284 8.488979 AAAACACATATTTTTCGTTTCGAGAG 57.511 30.769 0.00 0.00 37.14 3.20
284 285 8.844441 AAAAACACATATTTTTCGTTTCGAGA 57.156 26.923 0.00 0.00 37.21 4.04
308 309 5.234116 GCATCTTGCGGAAGAAAAAGAAAAA 59.766 36.000 23.62 0.00 41.64 1.94
309 310 4.744631 GCATCTTGCGGAAGAAAAAGAAAA 59.255 37.500 23.62 0.00 41.64 2.29
310 311 4.298332 GCATCTTGCGGAAGAAAAAGAAA 58.702 39.130 23.62 0.00 41.64 2.52
311 312 3.900941 GCATCTTGCGGAAGAAAAAGAA 58.099 40.909 23.62 0.00 41.64 2.52
312 313 3.559238 GCATCTTGCGGAAGAAAAAGA 57.441 42.857 23.62 0.00 41.64 2.52
324 325 0.731417 AGCAGATTCGTGCATCTTGC 59.269 50.000 0.00 0.00 46.60 4.01
325 326 3.423571 GAAAGCAGATTCGTGCATCTTG 58.576 45.455 0.00 0.00 46.60 3.02
326 327 2.094894 CGAAAGCAGATTCGTGCATCTT 59.905 45.455 10.11 2.37 46.60 2.40
327 328 1.662629 CGAAAGCAGATTCGTGCATCT 59.337 47.619 10.11 0.00 46.60 2.90
328 329 2.082733 CGAAAGCAGATTCGTGCATC 57.917 50.000 10.11 7.09 46.60 3.91
342 343 2.972625 TGGTCATACCTCTTGCGAAAG 58.027 47.619 0.00 0.00 39.58 2.62
343 344 3.270027 CATGGTCATACCTCTTGCGAAA 58.730 45.455 0.00 0.00 39.58 3.46
344 345 2.905075 CATGGTCATACCTCTTGCGAA 58.095 47.619 0.00 0.00 39.58 4.70
345 346 1.473257 GCATGGTCATACCTCTTGCGA 60.473 52.381 0.00 0.00 39.58 5.10
346 347 0.940126 GCATGGTCATACCTCTTGCG 59.060 55.000 0.00 0.00 39.58 4.85
413 414 3.961414 TCCCCCGGGAGCAAACAC 61.961 66.667 26.32 0.00 39.76 3.32
426 427 0.688749 AAGCAAATCCATGGCTCCCC 60.689 55.000 6.96 0.00 36.76 4.81
428 429 1.202336 CGAAAGCAAATCCATGGCTCC 60.202 52.381 6.96 0.00 36.76 4.70
457 458 1.471684 CCTCTTGTGGAAGCAATCTGC 59.528 52.381 0.00 0.00 45.46 4.26
562 566 3.995705 CCCGTGTTAATAGGTTTTGACGA 59.004 43.478 0.00 0.00 0.00 4.20
563 567 3.995705 TCCCGTGTTAATAGGTTTTGACG 59.004 43.478 0.00 0.00 0.00 4.35
581 585 6.144175 GTCGAGATCTTAAAACTAGATCCCG 58.856 44.000 9.56 9.56 45.81 5.14
602 606 1.068832 TCGTTGAATTCCTCGCGTCG 61.069 55.000 5.77 0.00 0.00 5.12
630 634 4.220382 TCAAAATGTGCTCAAATCCCGAAT 59.780 37.500 0.00 0.00 0.00 3.34
631 635 3.571828 TCAAAATGTGCTCAAATCCCGAA 59.428 39.130 0.00 0.00 0.00 4.30
633 637 3.574284 TCAAAATGTGCTCAAATCCCG 57.426 42.857 0.00 0.00 0.00 5.14
635 639 7.328249 TCGTTTATTCAAAATGTGCTCAAATCC 59.672 33.333 0.00 0.00 0.00 3.01
665 686 5.064834 ACGTGTGAGTTTTTCCTTCTTTCTC 59.935 40.000 0.00 0.00 0.00 2.87
693 715 1.732259 CCACAAGTGGCGTGACTTATC 59.268 52.381 6.27 0.00 44.73 1.75
695 717 3.299050 CCACAAGTGGCGTGACTTA 57.701 52.632 6.27 0.00 44.73 2.24
728 750 9.713713 GAAGTACTCCTTCTAAAAATCACTTCT 57.286 33.333 0.00 0.00 45.19 2.85
763 810 1.396996 CGGGATGCTTTTCGTCGAAAT 59.603 47.619 20.34 6.26 31.34 2.17
767 814 1.447140 TCCGGGATGCTTTTCGTCG 60.447 57.895 0.00 0.00 0.00 5.12
790 1253 5.066593 TGCGCTCTCTTTCATAGATAGAGA 58.933 41.667 9.73 13.83 41.76 3.10
791 1254 5.369685 TGCGCTCTCTTTCATAGATAGAG 57.630 43.478 9.73 7.80 38.48 2.43
792 1255 5.067805 TGTTGCGCTCTCTTTCATAGATAGA 59.932 40.000 9.73 0.00 30.60 1.98
793 1256 5.284864 TGTTGCGCTCTCTTTCATAGATAG 58.715 41.667 9.73 0.00 31.88 2.08
794 1257 5.262588 TGTTGCGCTCTCTTTCATAGATA 57.737 39.130 9.73 0.00 30.92 1.98
803 1266 1.373570 GCCTATTGTTGCGCTCTCTT 58.626 50.000 9.73 0.00 0.00 2.85
805 1268 1.440145 GGGCCTATTGTTGCGCTCTC 61.440 60.000 9.73 0.00 37.44 3.20
953 1416 4.956582 AGCCTAACCTAACCTAAGGAGAA 58.043 43.478 0.00 0.00 39.15 2.87
1301 1773 0.111089 GCACAGACGAGAAAACAGCG 60.111 55.000 0.00 0.00 0.00 5.18
1311 1783 2.380084 GGAAATACCTGCACAGACGA 57.620 50.000 0.00 0.00 35.41 4.20
1510 2783 4.530710 ACTACCGATGCAGTTGTAAGAA 57.469 40.909 0.00 0.00 0.00 2.52
1726 3021 0.883833 ATGCAAAACAGAGCCTTCGG 59.116 50.000 0.00 0.00 0.00 4.30
1780 3623 6.381801 CAACAAGAACTCACAGAACTTTTGT 58.618 36.000 0.00 0.00 0.00 2.83
1813 3656 2.061848 TGGGTCCCTTCAGATGAAACA 58.938 47.619 10.00 0.00 33.07 2.83
1912 3756 2.129607 GTCGACCACAACATACACGTT 58.870 47.619 3.51 0.00 0.00 3.99
2012 3856 6.645827 TCAGTGCAAAAATAACAATCACATGG 59.354 34.615 0.00 0.00 0.00 3.66
2046 4054 8.616076 GTTCTTCTCAAAGATCTGACAAGAAAA 58.384 33.333 13.41 7.98 40.07 2.29
2427 4436 0.463620 TTTTGTGCTTCTGCCCAACC 59.536 50.000 0.00 0.00 36.36 3.77
2487 4496 6.854496 ATAAGCAACAAAACACTCGTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
2493 4502 8.502161 AACGATAAATAAGCAACAAAACACTC 57.498 30.769 0.00 0.00 0.00 3.51
2630 4641 9.141400 GTAAGAGGAACTACACTTCACAATTAG 57.859 37.037 0.00 0.00 41.55 1.73
2715 4728 4.700213 TGCAACAGCTACCTAAAGAAATCC 59.300 41.667 0.00 0.00 0.00 3.01
2758 4771 8.295288 AGAAAAATGAGAAACAGAGCTGTAATG 58.705 33.333 3.21 0.00 44.13 1.90
2760 4773 7.807977 AGAAAAATGAGAAACAGAGCTGTAA 57.192 32.000 3.21 0.00 44.13 2.41
2826 4839 9.261035 ATGTATAACATCCCAAATTTGGTTACA 57.739 29.630 30.61 23.13 37.67 2.41
2830 4843 8.923270 CCTAATGTATAACATCCCAAATTTGGT 58.077 33.333 30.61 17.26 41.46 3.67
2831 4844 8.923270 ACCTAATGTATAACATCCCAAATTTGG 58.077 33.333 27.46 27.46 42.15 3.28
2865 4878 9.763465 GCCAAAATGCAATAAAATATGATATGC 57.237 29.630 0.00 0.00 0.00 3.14
2869 4882 9.616156 TCAAGCCAAAATGCAATAAAATATGAT 57.384 25.926 0.00 0.00 0.00 2.45
2870 4883 9.616156 ATCAAGCCAAAATGCAATAAAATATGA 57.384 25.926 0.00 0.00 0.00 2.15
2871 4884 9.872757 GATCAAGCCAAAATGCAATAAAATATG 57.127 29.630 0.00 0.00 0.00 1.78
2872 4885 9.059260 GGATCAAGCCAAAATGCAATAAAATAT 57.941 29.630 0.00 0.00 0.00 1.28
2873 4886 8.266473 AGGATCAAGCCAAAATGCAATAAAATA 58.734 29.630 0.00 0.00 0.00 1.40
2874 4887 7.114095 AGGATCAAGCCAAAATGCAATAAAAT 58.886 30.769 0.00 0.00 0.00 1.82
2875 4888 6.474630 AGGATCAAGCCAAAATGCAATAAAA 58.525 32.000 0.00 0.00 0.00 1.52
2876 4889 6.052405 AGGATCAAGCCAAAATGCAATAAA 57.948 33.333 0.00 0.00 0.00 1.40
2877 4890 5.680594 AGGATCAAGCCAAAATGCAATAA 57.319 34.783 0.00 0.00 0.00 1.40
2878 4891 6.128486 TCTAGGATCAAGCCAAAATGCAATA 58.872 36.000 0.00 0.00 0.00 1.90
2879 4892 4.957954 TCTAGGATCAAGCCAAAATGCAAT 59.042 37.500 0.00 0.00 0.00 3.56
2880 4893 4.343231 TCTAGGATCAAGCCAAAATGCAA 58.657 39.130 0.00 0.00 0.00 4.08
2881 4894 3.966979 TCTAGGATCAAGCCAAAATGCA 58.033 40.909 0.00 0.00 0.00 3.96
2882 4895 4.989279 TTCTAGGATCAAGCCAAAATGC 57.011 40.909 0.00 0.00 0.00 3.56
2883 4896 7.779073 AGAATTTCTAGGATCAAGCCAAAATG 58.221 34.615 0.00 0.00 0.00 2.32
2884 4897 7.968014 AGAATTTCTAGGATCAAGCCAAAAT 57.032 32.000 0.00 0.00 0.00 1.82
2885 4898 7.065803 CGTAGAATTTCTAGGATCAAGCCAAAA 59.934 37.037 17.32 0.00 37.10 2.44
2886 4899 6.538742 CGTAGAATTTCTAGGATCAAGCCAAA 59.461 38.462 17.32 0.00 37.10 3.28
2887 4900 6.049149 CGTAGAATTTCTAGGATCAAGCCAA 58.951 40.000 17.32 0.00 37.10 4.52
2888 4901 5.601662 CGTAGAATTTCTAGGATCAAGCCA 58.398 41.667 17.32 0.00 37.10 4.75
2889 4902 4.449405 GCGTAGAATTTCTAGGATCAAGCC 59.551 45.833 23.59 6.25 37.10 4.35
2890 4903 5.050490 TGCGTAGAATTTCTAGGATCAAGC 58.950 41.667 23.59 11.32 37.10 4.01
2891 4904 6.758886 AGTTGCGTAGAATTTCTAGGATCAAG 59.241 38.462 23.59 2.69 37.10 3.02
2892 4905 6.640518 AGTTGCGTAGAATTTCTAGGATCAA 58.359 36.000 23.59 17.13 37.10 2.57
2893 4906 6.127451 TGAGTTGCGTAGAATTTCTAGGATCA 60.127 38.462 23.59 17.90 37.10 2.92
2894 4907 6.199342 GTGAGTTGCGTAGAATTTCTAGGATC 59.801 42.308 23.59 16.26 37.10 3.36
2895 4908 6.043411 GTGAGTTGCGTAGAATTTCTAGGAT 58.957 40.000 23.59 10.22 37.10 3.24
2896 4909 5.185249 AGTGAGTTGCGTAGAATTTCTAGGA 59.815 40.000 23.59 10.26 37.10 2.94
2897 4910 5.411781 AGTGAGTTGCGTAGAATTTCTAGG 58.588 41.667 17.73 17.73 37.76 3.02
2898 4911 6.093404 TGAGTGAGTTGCGTAGAATTTCTAG 58.907 40.000 6.37 3.18 28.01 2.43
2899 4912 6.020971 TGAGTGAGTTGCGTAGAATTTCTA 57.979 37.500 1.90 1.90 0.00 2.10
2900 4913 4.883083 TGAGTGAGTTGCGTAGAATTTCT 58.117 39.130 4.03 4.03 0.00 2.52
2901 4914 5.446473 CCATGAGTGAGTTGCGTAGAATTTC 60.446 44.000 0.00 0.00 0.00 2.17
2902 4915 4.393062 CCATGAGTGAGTTGCGTAGAATTT 59.607 41.667 0.00 0.00 0.00 1.82
2903 4916 3.935203 CCATGAGTGAGTTGCGTAGAATT 59.065 43.478 0.00 0.00 0.00 2.17
2904 4917 3.195610 TCCATGAGTGAGTTGCGTAGAAT 59.804 43.478 0.00 0.00 0.00 2.40
2905 4918 2.560981 TCCATGAGTGAGTTGCGTAGAA 59.439 45.455 0.00 0.00 0.00 2.10
2906 4919 2.164422 CTCCATGAGTGAGTTGCGTAGA 59.836 50.000 0.00 0.00 0.00 2.59
2907 4920 2.164422 TCTCCATGAGTGAGTTGCGTAG 59.836 50.000 0.00 0.00 0.00 3.51
2908 4921 2.164422 CTCTCCATGAGTGAGTTGCGTA 59.836 50.000 0.00 0.00 37.99 4.42
2909 4922 0.969149 TCTCCATGAGTGAGTTGCGT 59.031 50.000 0.00 0.00 0.00 5.24
2910 4923 1.203287 TCTCTCCATGAGTGAGTTGCG 59.797 52.381 0.00 0.00 43.13 4.85
2911 4924 2.891112 CTCTCTCCATGAGTGAGTTGC 58.109 52.381 12.68 0.00 42.09 4.17
2916 4929 2.182827 CCCAACTCTCTCCATGAGTGA 58.817 52.381 0.00 0.00 43.16 3.41
2917 4930 1.209019 CCCCAACTCTCTCCATGAGTG 59.791 57.143 0.00 0.00 43.16 3.51
2918 4931 1.079490 TCCCCAACTCTCTCCATGAGT 59.921 52.381 0.00 0.00 45.55 3.41
2919 4932 1.871418 TCCCCAACTCTCTCCATGAG 58.129 55.000 0.00 0.00 43.96 2.90
2920 4933 2.575921 ATCCCCAACTCTCTCCATGA 57.424 50.000 0.00 0.00 0.00 3.07
2921 4934 3.659183 AAATCCCCAACTCTCTCCATG 57.341 47.619 0.00 0.00 0.00 3.66
2922 4935 3.334881 ACAAAATCCCCAACTCTCTCCAT 59.665 43.478 0.00 0.00 0.00 3.41
2923 4936 2.716424 ACAAAATCCCCAACTCTCTCCA 59.284 45.455 0.00 0.00 0.00 3.86
2924 4937 3.441500 ACAAAATCCCCAACTCTCTCC 57.558 47.619 0.00 0.00 0.00 3.71
2925 4938 6.004574 AGTTAACAAAATCCCCAACTCTCTC 58.995 40.000 8.61 0.00 0.00 3.20
2926 4939 5.953571 AGTTAACAAAATCCCCAACTCTCT 58.046 37.500 8.61 0.00 0.00 3.10
2927 4940 6.264518 TGAAGTTAACAAAATCCCCAACTCTC 59.735 38.462 8.61 0.00 0.00 3.20
2928 4941 6.133356 TGAAGTTAACAAAATCCCCAACTCT 58.867 36.000 8.61 0.00 0.00 3.24
2929 4942 6.399639 TGAAGTTAACAAAATCCCCAACTC 57.600 37.500 8.61 0.00 0.00 3.01
2930 4943 6.994421 ATGAAGTTAACAAAATCCCCAACT 57.006 33.333 8.61 0.00 0.00 3.16
2931 4944 9.719355 AAATATGAAGTTAACAAAATCCCCAAC 57.281 29.630 8.61 0.00 0.00 3.77
2932 4945 9.717942 CAAATATGAAGTTAACAAAATCCCCAA 57.282 29.630 8.61 0.00 0.00 4.12
2933 4946 9.094578 TCAAATATGAAGTTAACAAAATCCCCA 57.905 29.630 8.61 0.00 30.99 4.96
2934 4947 9.586435 CTCAAATATGAAGTTAACAAAATCCCC 57.414 33.333 8.61 0.00 34.49 4.81
2957 4970 9.369904 CCTCTTTTCAAAATTTGAGAAAACTCA 57.630 29.630 19.70 0.00 41.38 3.41
2958 4971 9.586435 TCCTCTTTTCAAAATTTGAGAAAACTC 57.414 29.630 19.70 0.00 41.38 3.01
2966 4979 9.275398 CCAAATGATCCTCTTTTCAAAATTTGA 57.725 29.630 4.03 4.03 38.04 2.69
2967 4980 9.059260 ACCAAATGATCCTCTTTTCAAAATTTG 57.941 29.630 0.00 0.00 0.00 2.32
2968 4981 9.631257 AACCAAATGATCCTCTTTTCAAAATTT 57.369 25.926 0.00 0.00 0.00 1.82
2969 4982 9.631257 AAACCAAATGATCCTCTTTTCAAAATT 57.369 25.926 0.00 0.00 0.00 1.82
2970 4983 9.631257 AAAACCAAATGATCCTCTTTTCAAAAT 57.369 25.926 0.00 0.00 0.00 1.82
2971 4984 8.891720 CAAAACCAAATGATCCTCTTTTCAAAA 58.108 29.630 0.00 0.00 0.00 2.44
2972 4985 8.263640 TCAAAACCAAATGATCCTCTTTTCAAA 58.736 29.630 0.00 0.00 0.00 2.69
2973 4986 7.790027 TCAAAACCAAATGATCCTCTTTTCAA 58.210 30.769 0.00 0.00 0.00 2.69
2974 4987 7.358770 TCAAAACCAAATGATCCTCTTTTCA 57.641 32.000 0.00 0.00 0.00 2.69
2975 4988 8.837788 AATCAAAACCAAATGATCCTCTTTTC 57.162 30.769 0.00 0.00 35.29 2.29
3007 5020 8.924511 TTCATCTAACTTGGAGAAGTCATTTT 57.075 30.769 0.00 0.00 41.87 1.82
3008 5021 8.924511 TTTCATCTAACTTGGAGAAGTCATTT 57.075 30.769 0.00 0.00 41.87 2.32
3074 5087 8.934825 GCAACTTTTCTAATGCAATAAAATCCA 58.065 29.630 0.00 0.00 38.63 3.41
3075 5088 8.934825 TGCAACTTTTCTAATGCAATAAAATCC 58.065 29.630 0.00 0.00 45.04 3.01
3084 5097 3.980646 ACGTGCAACTTTTCTAATGCA 57.019 38.095 0.00 0.00 45.75 3.96
3085 5098 5.635549 AAAACGTGCAACTTTTCTAATGC 57.364 34.783 0.00 0.00 37.30 3.56
3089 5102 9.959775 CAAATTTAAAAACGTGCAACTTTTCTA 57.040 25.926 0.00 0.00 37.30 2.10
3090 5103 7.480229 GCAAATTTAAAAACGTGCAACTTTTCT 59.520 29.630 0.00 0.22 37.30 2.52
3091 5104 7.269297 TGCAAATTTAAAAACGTGCAACTTTTC 59.731 29.630 13.02 0.00 37.30 2.29
3092 5105 7.078228 TGCAAATTTAAAAACGTGCAACTTTT 58.922 26.923 13.02 0.00 40.26 2.27
3093 5106 6.603095 TGCAAATTTAAAAACGTGCAACTTT 58.397 28.000 13.02 0.00 37.79 2.66
3094 5107 6.170675 TGCAAATTTAAAAACGTGCAACTT 57.829 29.167 13.02 0.00 37.79 2.66
3095 5108 5.786401 TGCAAATTTAAAAACGTGCAACT 57.214 30.435 13.02 0.00 37.79 3.16
3096 5109 7.429888 AAATGCAAATTTAAAAACGTGCAAC 57.570 28.000 17.05 0.00 41.46 4.17
3097 5110 9.214953 CTAAAATGCAAATTTAAAAACGTGCAA 57.785 25.926 17.05 5.64 41.46 4.08
3098 5111 8.391106 ACTAAAATGCAAATTTAAAAACGTGCA 58.609 25.926 16.04 16.04 41.98 4.57
3099 5112 8.668934 CACTAAAATGCAAATTTAAAAACGTGC 58.331 29.630 8.76 0.71 33.77 5.34
3100 5113 8.668934 GCACTAAAATGCAAATTTAAAAACGTG 58.331 29.630 14.07 14.07 45.39 4.49
3101 5114 8.760703 GCACTAAAATGCAAATTTAAAAACGT 57.239 26.923 8.76 0.00 45.39 3.99
3111 5124 7.229106 ACATTTTCTTGGCACTAAAATGCAAAT 59.771 29.630 28.86 16.78 46.87 2.32
3112 5125 6.541641 ACATTTTCTTGGCACTAAAATGCAAA 59.458 30.769 28.86 5.26 46.87 3.68
3113 5126 6.054295 ACATTTTCTTGGCACTAAAATGCAA 58.946 32.000 28.86 5.79 46.87 4.08
3114 5127 5.609423 ACATTTTCTTGGCACTAAAATGCA 58.391 33.333 28.86 0.00 46.87 3.96
3115 5128 6.202570 TGAACATTTTCTTGGCACTAAAATGC 59.797 34.615 28.86 20.46 46.87 3.56
3117 5130 8.907222 AATGAACATTTTCTTGGCACTAAAAT 57.093 26.923 11.33 11.33 34.09 1.82
3118 5131 8.729805 AAATGAACATTTTCTTGGCACTAAAA 57.270 26.923 6.91 8.20 37.74 1.52
3119 5132 8.610896 CAAAATGAACATTTTCTTGGCACTAAA 58.389 29.630 18.58 0.00 46.01 1.85
3120 5133 7.768120 ACAAAATGAACATTTTCTTGGCACTAA 59.232 29.630 18.58 0.00 46.01 2.24
3121 5134 7.271511 ACAAAATGAACATTTTCTTGGCACTA 58.728 30.769 18.58 0.00 46.01 2.74
3122 5135 6.114767 ACAAAATGAACATTTTCTTGGCACT 58.885 32.000 18.58 0.00 46.01 4.40
3123 5136 6.362210 ACAAAATGAACATTTTCTTGGCAC 57.638 33.333 18.58 0.00 46.01 5.01
3124 5137 6.822676 AGAACAAAATGAACATTTTCTTGGCA 59.177 30.769 18.58 0.00 46.01 4.92
3125 5138 7.250445 AGAACAAAATGAACATTTTCTTGGC 57.750 32.000 18.58 9.58 46.01 4.52
3159 5172 8.552865 GCCAAAACAAATTTTTACCGTCTAAAT 58.447 29.630 0.00 0.00 35.79 1.40
3160 5173 7.548075 TGCCAAAACAAATTTTTACCGTCTAAA 59.452 29.630 0.00 0.00 35.79 1.85
3161 5174 7.039882 TGCCAAAACAAATTTTTACCGTCTAA 58.960 30.769 0.00 0.00 35.79 2.10
3162 5175 6.570692 TGCCAAAACAAATTTTTACCGTCTA 58.429 32.000 0.00 0.00 35.79 2.59
3163 5176 5.420409 TGCCAAAACAAATTTTTACCGTCT 58.580 33.333 0.00 0.00 35.79 4.18
3164 5177 5.720261 TGCCAAAACAAATTTTTACCGTC 57.280 34.783 0.00 0.00 35.79 4.79
3165 5178 6.685527 AATGCCAAAACAAATTTTTACCGT 57.314 29.167 0.00 0.00 35.79 4.83
3166 5179 7.977490 AAAATGCCAAAACAAATTTTTACCG 57.023 28.000 0.00 0.00 35.79 4.02
3204 5217 9.169592 TCCGACGAAAATAAATCCTAGAAAAAT 57.830 29.630 0.00 0.00 0.00 1.82
3205 5218 8.550710 TCCGACGAAAATAAATCCTAGAAAAA 57.449 30.769 0.00 0.00 0.00 1.94
3206 5219 8.445493 GTTCCGACGAAAATAAATCCTAGAAAA 58.555 33.333 0.00 0.00 0.00 2.29
3207 5220 7.967178 GTTCCGACGAAAATAAATCCTAGAAA 58.033 34.615 0.00 0.00 0.00 2.52
3208 5221 7.529880 GTTCCGACGAAAATAAATCCTAGAA 57.470 36.000 0.00 0.00 0.00 2.10
3244 5257 0.534203 TCGGGCGCTGACTTCTTTTT 60.534 50.000 7.64 0.00 0.00 1.94
3245 5258 1.070786 TCGGGCGCTGACTTCTTTT 59.929 52.632 7.64 0.00 0.00 2.27
3246 5259 1.668151 GTCGGGCGCTGACTTCTTT 60.668 57.895 20.92 0.00 36.86 2.52
3247 5260 2.048127 GTCGGGCGCTGACTTCTT 60.048 61.111 20.92 0.00 36.86 2.52
3248 5261 2.992114 AGTCGGGCGCTGACTTCT 60.992 61.111 23.85 8.38 46.59 2.85
3249 5262 2.811317 CAGTCGGGCGCTGACTTC 60.811 66.667 25.98 7.03 46.59 3.01
3250 5263 4.379243 CCAGTCGGGCGCTGACTT 62.379 66.667 25.98 13.44 46.59 3.01
3315 5328 3.827898 GGCAGTCTCCCGGAGTCG 61.828 72.222 14.36 6.72 0.00 4.18
3316 5329 3.827898 CGGCAGTCTCCCGGAGTC 61.828 72.222 14.36 8.93 41.99 3.36
3343 5356 2.997315 GCTTTGGGGAGGGGCAAC 60.997 66.667 0.00 0.00 0.00 4.17
3344 5357 4.315264 GGCTTTGGGGAGGGGCAA 62.315 66.667 0.00 0.00 0.00 4.52
3347 5360 4.426313 GTCGGCTTTGGGGAGGGG 62.426 72.222 0.00 0.00 0.00 4.79
3348 5361 4.426313 GGTCGGCTTTGGGGAGGG 62.426 72.222 0.00 0.00 0.00 4.30
3349 5362 3.330720 AGGTCGGCTTTGGGGAGG 61.331 66.667 0.00 0.00 0.00 4.30
3350 5363 2.269241 GAGGTCGGCTTTGGGGAG 59.731 66.667 0.00 0.00 0.00 4.30
3351 5364 3.702048 CGAGGTCGGCTTTGGGGA 61.702 66.667 0.00 0.00 35.37 4.81
3367 5380 4.492303 TAAGAGGGGGAGGGGGCG 62.492 72.222 0.00 0.00 0.00 6.13
3368 5381 0.999493 ATTTAAGAGGGGGAGGGGGC 60.999 60.000 0.00 0.00 0.00 5.80
3369 5382 2.063425 GTATTTAAGAGGGGGAGGGGG 58.937 57.143 0.00 0.00 0.00 5.40
3370 5383 2.063425 GGTATTTAAGAGGGGGAGGGG 58.937 57.143 0.00 0.00 0.00 4.79
3371 5384 2.063425 GGGTATTTAAGAGGGGGAGGG 58.937 57.143 0.00 0.00 0.00 4.30
3372 5385 1.697982 CGGGTATTTAAGAGGGGGAGG 59.302 57.143 0.00 0.00 0.00 4.30
3373 5386 1.071857 GCGGGTATTTAAGAGGGGGAG 59.928 57.143 0.00 0.00 0.00 4.30
3374 5387 1.134228 GCGGGTATTTAAGAGGGGGA 58.866 55.000 0.00 0.00 0.00 4.81
3375 5388 0.109913 GGCGGGTATTTAAGAGGGGG 59.890 60.000 0.00 0.00 0.00 5.40
3376 5389 0.250166 CGGCGGGTATTTAAGAGGGG 60.250 60.000 0.00 0.00 0.00 4.79
3377 5390 0.883370 GCGGCGGGTATTTAAGAGGG 60.883 60.000 9.78 0.00 0.00 4.30
3378 5391 0.883370 GGCGGCGGGTATTTAAGAGG 60.883 60.000 9.78 0.00 0.00 3.69
3379 5392 1.219522 CGGCGGCGGGTATTTAAGAG 61.220 60.000 25.36 0.00 0.00 2.85
3380 5393 1.227321 CGGCGGCGGGTATTTAAGA 60.227 57.895 25.36 0.00 0.00 2.10
3381 5394 2.888998 GCGGCGGCGGGTATTTAAG 61.889 63.158 33.02 0.65 0.00 1.85
3382 5395 2.896359 GCGGCGGCGGGTATTTAA 60.896 61.111 33.02 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.