Multiple sequence alignment - TraesCS3D01G243000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G243000 chr3D 100.000 3272 0 0 1 3272 338351075 338347804 0.000000e+00 6043.0
1 TraesCS3D01G243000 chr3D 88.525 1037 108 6 1247 2274 338321160 338322194 0.000000e+00 1245.0
2 TraesCS3D01G243000 chr3A 91.106 3227 151 55 107 3272 456701779 456698628 0.000000e+00 4244.0
3 TraesCS3D01G243000 chr3A 89.585 1037 97 7 1247 2274 456452188 456453222 0.000000e+00 1306.0
4 TraesCS3D01G243000 chr3B 94.342 2775 106 25 114 2862 436729189 436726440 0.000000e+00 4207.0
5 TraesCS3D01G243000 chr3B 89.602 1029 100 5 1251 2274 436574737 436575763 0.000000e+00 1301.0
6 TraesCS3D01G243000 chr3B 95.330 364 15 2 2910 3272 436726442 436726080 7.870000e-161 577.0
7 TraesCS3D01G243000 chr3B 95.238 84 4 0 3 86 436729269 436729186 2.050000e-27 134.0
8 TraesCS3D01G243000 chr2D 93.333 135 8 1 1370 1503 536380669 536380803 7.160000e-47 198.0
9 TraesCS3D01G243000 chr2B 92.537 134 10 0 1370 1503 637775928 637776061 3.330000e-45 193.0
10 TraesCS3D01G243000 chr6B 92.308 65 5 0 1699 1763 347591962 347591898 3.480000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G243000 chr3D 338347804 338351075 3271 True 6043.000000 6043 100.000 1 3272 1 chr3D.!!$R1 3271
1 TraesCS3D01G243000 chr3D 338321160 338322194 1034 False 1245.000000 1245 88.525 1247 2274 1 chr3D.!!$F1 1027
2 TraesCS3D01G243000 chr3A 456698628 456701779 3151 True 4244.000000 4244 91.106 107 3272 1 chr3A.!!$R1 3165
3 TraesCS3D01G243000 chr3A 456452188 456453222 1034 False 1306.000000 1306 89.585 1247 2274 1 chr3A.!!$F1 1027
4 TraesCS3D01G243000 chr3B 436726080 436729269 3189 True 1639.333333 4207 94.970 3 3272 3 chr3B.!!$R1 3269
5 TraesCS3D01G243000 chr3B 436574737 436575763 1026 False 1301.000000 1301 89.602 1251 2274 1 chr3B.!!$F1 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 978 1.224069 CCATTCCCTACATCTGCGCG 61.224 60.0 0.0 0.0 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2748 2851 1.065854 GCTACAGGTGAGTTCCATGCT 60.066 52.381 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.673523 GTGCTCCAGCCTCCATGT 59.326 61.111 0.00 0.00 41.18 3.21
49 50 6.367374 TGAGTGGGAATGACAGTATTACAA 57.633 37.500 0.00 0.00 0.00 2.41
83 84 9.786105 AAATTCAAATTTAAAACTGGTGCTTTG 57.214 25.926 0.00 0.00 36.88 2.77
84 85 7.913674 TTCAAATTTAAAACTGGTGCTTTGT 57.086 28.000 0.00 0.00 0.00 2.83
85 86 9.606631 ATTCAAATTTAAAACTGGTGCTTTGTA 57.393 25.926 0.00 0.00 0.00 2.41
86 87 8.413899 TCAAATTTAAAACTGGTGCTTTGTAC 57.586 30.769 0.00 0.00 0.00 2.90
87 88 8.035394 TCAAATTTAAAACTGGTGCTTTGTACA 58.965 29.630 0.00 0.00 0.00 2.90
88 89 8.327429 CAAATTTAAAACTGGTGCTTTGTACAG 58.673 33.333 0.00 0.00 37.01 2.74
89 90 6.518208 TTTAAAACTGGTGCTTTGTACAGT 57.482 33.333 0.00 0.00 45.34 3.55
90 91 7.627298 TTTAAAACTGGTGCTTTGTACAGTA 57.373 32.000 0.00 0.00 42.85 2.74
91 92 7.811117 TTAAAACTGGTGCTTTGTACAGTAT 57.189 32.000 0.00 0.00 42.85 2.12
92 93 8.905660 TTAAAACTGGTGCTTTGTACAGTATA 57.094 30.769 0.00 0.00 42.85 1.47
93 94 7.811117 AAAACTGGTGCTTTGTACAGTATAA 57.189 32.000 0.00 0.00 42.85 0.98
94 95 7.811117 AAACTGGTGCTTTGTACAGTATAAA 57.189 32.000 0.00 2.81 42.85 1.40
95 96 7.811117 AACTGGTGCTTTGTACAGTATAAAA 57.189 32.000 4.27 0.00 42.85 1.52
96 97 7.996098 ACTGGTGCTTTGTACAGTATAAAAT 57.004 32.000 4.27 0.00 41.95 1.82
97 98 7.816640 ACTGGTGCTTTGTACAGTATAAAATG 58.183 34.615 4.27 0.00 41.95 2.32
98 99 7.447238 ACTGGTGCTTTGTACAGTATAAAATGT 59.553 33.333 4.27 0.00 41.95 2.71
99 100 7.589395 TGGTGCTTTGTACAGTATAAAATGTG 58.411 34.615 4.27 0.00 0.00 3.21
100 101 7.445707 TGGTGCTTTGTACAGTATAAAATGTGA 59.554 33.333 4.27 0.00 0.00 3.58
101 102 8.293867 GGTGCTTTGTACAGTATAAAATGTGAA 58.706 33.333 4.27 0.00 0.00 3.18
102 103 9.329913 GTGCTTTGTACAGTATAAAATGTGAAG 57.670 33.333 4.27 0.00 0.00 3.02
103 104 8.511321 TGCTTTGTACAGTATAAAATGTGAAGG 58.489 33.333 4.27 0.00 0.00 3.46
104 105 7.484959 GCTTTGTACAGTATAAAATGTGAAGGC 59.515 37.037 4.27 0.00 0.00 4.35
105 106 6.656314 TGTACAGTATAAAATGTGAAGGCG 57.344 37.500 0.00 0.00 0.00 5.52
140 141 7.083062 AGATCCCTTGATTGCATACTATCAA 57.917 36.000 10.34 10.34 42.97 2.57
450 453 6.643770 TCGAGGTTTTGTATGTCTTACTTGTC 59.356 38.462 0.00 0.00 0.00 3.18
451 454 6.645415 CGAGGTTTTGTATGTCTTACTTGTCT 59.355 38.462 0.00 0.00 0.00 3.41
479 482 4.513692 GTGGCAGTTGTTGTAGTTCATGTA 59.486 41.667 0.00 0.00 0.00 2.29
526 529 6.135290 TGAGAAGATTTGTCTTGTTTGTGG 57.865 37.500 0.00 0.00 0.00 4.17
569 572 6.975196 TCAAATTCAGAAAATGGTCTTGGA 57.025 33.333 0.00 0.00 0.00 3.53
631 661 3.181454 ACTGACGAGGTGTTTTGATCCTT 60.181 43.478 0.00 0.00 0.00 3.36
794 824 4.949856 CCACCAGTTCTAATTTAGCATGGT 59.050 41.667 15.56 15.56 36.60 3.55
795 825 6.069905 TCCACCAGTTCTAATTTAGCATGGTA 60.070 38.462 18.57 0.00 35.36 3.25
804 834 9.982651 TTCTAATTTAGCATGGTATACAGAGAC 57.017 33.333 5.28 0.00 0.00 3.36
938 968 3.553828 CGGAAGCTTAACCATTCCCTA 57.446 47.619 0.00 0.00 39.50 3.53
940 970 3.370103 CGGAAGCTTAACCATTCCCTACA 60.370 47.826 0.00 0.00 39.50 2.74
942 972 4.822350 GGAAGCTTAACCATTCCCTACATC 59.178 45.833 0.00 0.00 37.17 3.06
943 973 5.398012 GGAAGCTTAACCATTCCCTACATCT 60.398 44.000 0.00 0.00 37.17 2.90
944 974 5.041191 AGCTTAACCATTCCCTACATCTG 57.959 43.478 0.00 0.00 0.00 2.90
945 975 3.565902 GCTTAACCATTCCCTACATCTGC 59.434 47.826 0.00 0.00 0.00 4.26
946 976 2.332063 AACCATTCCCTACATCTGCG 57.668 50.000 0.00 0.00 0.00 5.18
948 978 1.224069 CCATTCCCTACATCTGCGCG 61.224 60.000 0.00 0.00 0.00 6.86
950 980 2.383245 ATTCCCTACATCTGCGCGGG 62.383 60.000 17.88 12.39 36.21 6.13
1110 1151 2.671177 CCGCAAGCTGTCCTTCACG 61.671 63.158 0.00 0.00 32.61 4.35
1600 1663 1.722677 GTCGACGATCTCCGCTTCT 59.277 57.895 0.00 0.00 43.32 2.85
2091 2163 4.096003 GGCACTAGCAAGGCCGGA 62.096 66.667 5.05 0.00 44.61 5.14
2187 2259 1.875813 CGATGTCGAGCTGCAGGTC 60.876 63.158 31.39 31.39 43.02 3.85
2345 2422 4.450757 GGTTATTGCCATTGTTGTTGTTCC 59.549 41.667 0.00 0.00 0.00 3.62
2380 2466 1.686115 GGCTGGGGTTAATGATGTGCT 60.686 52.381 0.00 0.00 0.00 4.40
2428 2517 5.672653 TGACATATTGGTTTATACTCCCCCA 59.327 40.000 0.00 0.00 0.00 4.96
2439 2528 7.344134 GTTTATACTCCCCCATCCCATAATAC 58.656 42.308 0.00 0.00 0.00 1.89
2445 2534 5.681381 TCCCCCATCCCATAATACAAGATA 58.319 41.667 0.00 0.00 0.00 1.98
2502 2600 7.854337 TGGGACGGAAGAAGTACTAAATAAAT 58.146 34.615 0.00 0.00 0.00 1.40
2522 2623 5.562506 AATCAGATCTTGTCGAAGTCGTA 57.437 39.130 0.00 0.00 40.80 3.43
2710 2813 6.768381 GGCTTATGGTTTGAATCTAGTTAGCT 59.232 38.462 0.00 0.00 0.00 3.32
2748 2851 1.675007 TGAGAGGGTGGAGAGAGAGA 58.325 55.000 0.00 0.00 0.00 3.10
2749 2852 1.563879 TGAGAGGGTGGAGAGAGAGAG 59.436 57.143 0.00 0.00 0.00 3.20
2775 2878 4.645136 TGGAACTCACCTGTAGCTACTATG 59.355 45.833 23.84 17.86 0.00 2.23
2862 2965 3.756117 ACATCAAAAGGACCTCAGGAAC 58.244 45.455 0.00 0.00 0.00 3.62
2863 2966 3.138283 ACATCAAAAGGACCTCAGGAACA 59.862 43.478 0.00 0.00 0.00 3.18
2868 2971 6.369629 TCAAAAGGACCTCAGGAACAAAATA 58.630 36.000 0.00 0.00 0.00 1.40
2869 2972 6.836527 TCAAAAGGACCTCAGGAACAAAATAA 59.163 34.615 0.00 0.00 0.00 1.40
2870 2973 6.901081 AAAGGACCTCAGGAACAAAATAAG 57.099 37.500 0.00 0.00 0.00 1.73
2871 2974 5.843019 AGGACCTCAGGAACAAAATAAGA 57.157 39.130 0.00 0.00 0.00 2.10
2872 2975 5.810095 AGGACCTCAGGAACAAAATAAGAG 58.190 41.667 0.00 0.00 0.00 2.85
2873 2976 5.310857 AGGACCTCAGGAACAAAATAAGAGT 59.689 40.000 0.00 0.00 0.00 3.24
2874 2977 6.004574 GGACCTCAGGAACAAAATAAGAGTT 58.995 40.000 0.00 0.00 0.00 3.01
2875 2978 6.072452 GGACCTCAGGAACAAAATAAGAGTTG 60.072 42.308 0.00 0.00 0.00 3.16
2876 2979 5.241728 ACCTCAGGAACAAAATAAGAGTTGC 59.758 40.000 0.00 0.00 34.36 4.17
2877 2980 5.474876 CCTCAGGAACAAAATAAGAGTTGCT 59.525 40.000 0.00 0.00 43.32 3.91
2878 2981 6.015940 CCTCAGGAACAAAATAAGAGTTGCTT 60.016 38.462 0.00 0.00 41.11 3.91
2879 2982 6.738114 TCAGGAACAAAATAAGAGTTGCTTG 58.262 36.000 0.00 0.00 41.11 4.01
2880 2983 6.545666 TCAGGAACAAAATAAGAGTTGCTTGA 59.454 34.615 0.00 0.00 41.11 3.02
2881 2984 7.231317 TCAGGAACAAAATAAGAGTTGCTTGAT 59.769 33.333 0.00 0.00 41.11 2.57
2882 2985 8.514594 CAGGAACAAAATAAGAGTTGCTTGATA 58.485 33.333 0.00 0.00 41.11 2.15
2883 2986 9.077885 AGGAACAAAATAAGAGTTGCTTGATAA 57.922 29.630 0.00 0.00 40.33 1.75
2884 2987 9.691362 GGAACAAAATAAGAGTTGCTTGATAAA 57.309 29.630 0.00 0.00 37.42 1.40
2898 3001 7.479352 TGCTTGATAAATTGGAAGATTTGGA 57.521 32.000 0.00 0.00 31.96 3.53
3106 3210 4.527427 GGGAGGGGATACTATGTACACTTC 59.473 50.000 0.00 0.00 0.00 3.01
3128 3232 2.029838 AACATGGCTCCGATGTTCTC 57.970 50.000 0.00 0.00 39.34 2.87
3136 3240 0.178767 TCCGATGTTCTCATGGGCAG 59.821 55.000 4.74 0.00 45.47 4.85
3195 3299 9.733556 TGACTTATTATGAAAGCTTAGTTTGGA 57.266 29.630 0.00 0.00 0.00 3.53
3226 3330 5.743117 AGGCCATATGAATCTAGAGAATGC 58.257 41.667 5.01 0.00 0.00 3.56
3251 3355 6.303054 TGTGGACCTGAAGAATGTTTATCAA 58.697 36.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.626356 TACATGGAGGCTGGAGCACC 61.626 60.000 0.00 4.29 44.36 5.01
1 2 0.471617 ATACATGGAGGCTGGAGCAC 59.528 55.000 0.00 0.00 44.36 4.40
18 19 5.485353 ACTGTCATTCCCACTCAAGAGAATA 59.515 40.000 3.73 0.00 0.00 1.75
58 59 8.955388 ACAAAGCACCAGTTTTAAATTTGAATT 58.045 25.926 11.58 0.00 32.28 2.17
76 77 9.329913 CTTCACATTTTATACTGTACAAAGCAC 57.670 33.333 0.00 0.00 0.00 4.40
82 83 6.399743 TCGCCTTCACATTTTATACTGTACA 58.600 36.000 0.00 0.00 0.00 2.90
83 84 6.897259 TCGCCTTCACATTTTATACTGTAC 57.103 37.500 0.00 0.00 0.00 2.90
84 85 6.537301 CCTTCGCCTTCACATTTTATACTGTA 59.463 38.462 0.00 0.00 0.00 2.74
85 86 5.354234 CCTTCGCCTTCACATTTTATACTGT 59.646 40.000 0.00 0.00 0.00 3.55
86 87 5.584649 TCCTTCGCCTTCACATTTTATACTG 59.415 40.000 0.00 0.00 0.00 2.74
87 88 5.741011 TCCTTCGCCTTCACATTTTATACT 58.259 37.500 0.00 0.00 0.00 2.12
88 89 6.619801 ATCCTTCGCCTTCACATTTTATAC 57.380 37.500 0.00 0.00 0.00 1.47
89 90 7.936847 ACATATCCTTCGCCTTCACATTTTATA 59.063 33.333 0.00 0.00 0.00 0.98
90 91 6.772716 ACATATCCTTCGCCTTCACATTTTAT 59.227 34.615 0.00 0.00 0.00 1.40
91 92 6.119536 ACATATCCTTCGCCTTCACATTTTA 58.880 36.000 0.00 0.00 0.00 1.52
92 93 4.949856 ACATATCCTTCGCCTTCACATTTT 59.050 37.500 0.00 0.00 0.00 1.82
93 94 4.526970 ACATATCCTTCGCCTTCACATTT 58.473 39.130 0.00 0.00 0.00 2.32
94 95 4.156455 ACATATCCTTCGCCTTCACATT 57.844 40.909 0.00 0.00 0.00 2.71
95 96 3.845781 ACATATCCTTCGCCTTCACAT 57.154 42.857 0.00 0.00 0.00 3.21
96 97 3.958147 TCTACATATCCTTCGCCTTCACA 59.042 43.478 0.00 0.00 0.00 3.58
97 98 4.585955 TCTACATATCCTTCGCCTTCAC 57.414 45.455 0.00 0.00 0.00 3.18
98 99 4.220821 GGATCTACATATCCTTCGCCTTCA 59.779 45.833 0.00 0.00 41.99 3.02
99 100 4.382147 GGGATCTACATATCCTTCGCCTTC 60.382 50.000 3.09 0.00 44.27 3.46
100 101 3.515901 GGGATCTACATATCCTTCGCCTT 59.484 47.826 3.09 0.00 44.27 4.35
101 102 3.100671 GGGATCTACATATCCTTCGCCT 58.899 50.000 3.09 0.00 44.27 5.52
102 103 3.100671 AGGGATCTACATATCCTTCGCC 58.899 50.000 3.09 0.00 44.27 5.54
103 104 4.220821 TCAAGGGATCTACATATCCTTCGC 59.779 45.833 3.09 0.00 44.27 4.70
104 105 5.984695 TCAAGGGATCTACATATCCTTCG 57.015 43.478 3.09 0.00 44.27 3.79
105 106 6.597280 GCAATCAAGGGATCTACATATCCTTC 59.403 42.308 3.09 0.00 44.27 3.46
140 141 6.239120 GCAAATTCAATGGTAGCATCTGGTAT 60.239 38.462 8.07 4.53 0.00 2.73
215 216 2.869101 TGCCATGGTGCAAGTTAGTA 57.131 45.000 14.67 0.00 38.56 1.82
450 453 0.466189 ACAACAACTGCCACCTGGAG 60.466 55.000 0.00 0.00 37.39 3.86
451 454 0.840617 TACAACAACTGCCACCTGGA 59.159 50.000 0.00 0.00 37.39 3.86
479 482 1.068333 GCAGTTGCATGAACCGTGATT 60.068 47.619 0.00 0.00 41.59 2.57
526 529 1.821216 TTTCGCCAGATCAAGGGAAC 58.179 50.000 12.21 0.00 35.02 3.62
569 572 4.816392 TCTACATTGCGTGACTGTACATT 58.184 39.130 0.00 0.00 0.00 2.71
631 661 0.537143 AACGCCCAGCAAATCAGTCA 60.537 50.000 0.00 0.00 0.00 3.41
768 798 6.016777 CCATGCTAAATTAGAACTGGTGGATC 60.017 42.308 3.88 0.00 0.00 3.36
794 824 5.066634 CCTGCTTCTTTCTCGTCTCTGTATA 59.933 44.000 0.00 0.00 0.00 1.47
795 825 4.142271 CCTGCTTCTTTCTCGTCTCTGTAT 60.142 45.833 0.00 0.00 0.00 2.29
804 834 2.169832 TGGAACCTGCTTCTTTCTCG 57.830 50.000 0.00 0.00 0.00 4.04
946 976 4.430765 TTCTCGGTTCTCGCCCGC 62.431 66.667 0.00 0.00 45.09 6.13
948 978 2.184579 CCTTCTCGGTTCTCGCCC 59.815 66.667 0.00 0.00 39.05 6.13
950 980 2.881352 CGCCTTCTCGGTTCTCGC 60.881 66.667 0.00 0.00 39.05 5.03
951 981 1.801913 CACGCCTTCTCGGTTCTCG 60.802 63.158 0.00 0.00 40.90 4.04
952 982 1.446272 CCACGCCTTCTCGGTTCTC 60.446 63.158 0.00 0.00 34.25 2.87
1110 1151 3.891366 AGCTAAGAAGATCTCTCCAGCTC 59.109 47.826 13.29 0.00 43.82 4.09
1249 1311 2.029200 TGCATCAACCATCGCAACAAAT 60.029 40.909 0.00 0.00 0.00 2.32
1590 1653 2.665000 CAGGCCAAGAAGCGGAGA 59.335 61.111 5.01 0.00 0.00 3.71
1915 1987 2.431430 CTCGCTCTCGCTGTTGCA 60.431 61.111 0.00 0.00 39.64 4.08
2091 2163 2.224159 AACCACCATCCTCGCCACT 61.224 57.895 0.00 0.00 0.00 4.00
2187 2259 3.179869 TTTGCTGTGGTTGAGCGCG 62.180 57.895 0.00 0.00 39.47 6.86
2339 2416 2.026905 GCAAGGACCCAACAGGAACAA 61.027 52.381 0.00 0.00 39.89 2.83
2476 2574 5.952347 ATTTAGTACTTCTTCCGTCCCAT 57.048 39.130 0.00 0.00 0.00 4.00
2480 2578 9.798994 TCTGATTTATTTAGTACTTCTTCCGTC 57.201 33.333 0.00 0.00 0.00 4.79
2502 2600 4.876679 AGATACGACTTCGACAAGATCTGA 59.123 41.667 5.47 0.00 43.02 3.27
2522 2623 3.264193 TGGAGACACCATGCAAGTTAGAT 59.736 43.478 0.00 0.00 44.64 1.98
2648 2751 4.929211 TCCAATAACTATTCATCCGCGATG 59.071 41.667 8.23 10.03 41.00 3.84
2710 2813 3.948719 GGAACTCGGGGTGCACCA 61.949 66.667 35.78 16.13 42.91 4.17
2748 2851 1.065854 GCTACAGGTGAGTTCCATGCT 60.066 52.381 0.00 0.00 0.00 3.79
2749 2852 1.065854 AGCTACAGGTGAGTTCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
2796 2899 9.269453 GTTGTATGTTACTTTCCTAACTTCAGT 57.731 33.333 0.00 0.00 0.00 3.41
2868 2971 7.765695 TCTTCCAATTTATCAAGCAACTCTT 57.234 32.000 0.00 0.00 34.78 2.85
2869 2972 7.951347 ATCTTCCAATTTATCAAGCAACTCT 57.049 32.000 0.00 0.00 0.00 3.24
2870 2973 8.866956 CAAATCTTCCAATTTATCAAGCAACTC 58.133 33.333 0.00 0.00 0.00 3.01
2871 2974 7.820872 CCAAATCTTCCAATTTATCAAGCAACT 59.179 33.333 0.00 0.00 0.00 3.16
2872 2975 7.818930 TCCAAATCTTCCAATTTATCAAGCAAC 59.181 33.333 0.00 0.00 0.00 4.17
2873 2976 7.905265 TCCAAATCTTCCAATTTATCAAGCAA 58.095 30.769 0.00 0.00 0.00 3.91
2874 2977 7.178983 ACTCCAAATCTTCCAATTTATCAAGCA 59.821 33.333 0.00 0.00 0.00 3.91
2875 2978 7.550712 ACTCCAAATCTTCCAATTTATCAAGC 58.449 34.615 0.00 0.00 0.00 4.01
2876 2979 9.362539 CAACTCCAAATCTTCCAATTTATCAAG 57.637 33.333 0.00 0.00 0.00 3.02
2877 2980 7.818930 GCAACTCCAAATCTTCCAATTTATCAA 59.181 33.333 0.00 0.00 0.00 2.57
2878 2981 7.178983 AGCAACTCCAAATCTTCCAATTTATCA 59.821 33.333 0.00 0.00 0.00 2.15
2879 2982 7.550712 AGCAACTCCAAATCTTCCAATTTATC 58.449 34.615 0.00 0.00 0.00 1.75
2880 2983 7.486407 AGCAACTCCAAATCTTCCAATTTAT 57.514 32.000 0.00 0.00 0.00 1.40
2881 2984 6.916360 AGCAACTCCAAATCTTCCAATTTA 57.084 33.333 0.00 0.00 0.00 1.40
2882 2985 5.813513 AGCAACTCCAAATCTTCCAATTT 57.186 34.783 0.00 0.00 0.00 1.82
2883 2986 5.305128 TCAAGCAACTCCAAATCTTCCAATT 59.695 36.000 0.00 0.00 0.00 2.32
2884 2987 4.834496 TCAAGCAACTCCAAATCTTCCAAT 59.166 37.500 0.00 0.00 0.00 3.16
2885 2988 4.214310 TCAAGCAACTCCAAATCTTCCAA 58.786 39.130 0.00 0.00 0.00 3.53
2898 3001 9.294614 AGAAAGATTAGATTTCTTCAAGCAACT 57.705 29.630 0.00 0.00 42.86 3.16
3106 3210 3.535561 AGAACATCGGAGCCATGTTTAG 58.464 45.455 14.24 0.00 43.16 1.85
3128 3232 2.621998 GAGGATTTGATCACTGCCCATG 59.378 50.000 0.00 0.00 0.00 3.66
3136 3240 8.341173 CAGTAGCATTTTAGAGGATTTGATCAC 58.659 37.037 0.00 0.00 0.00 3.06
3188 3292 0.988063 GGCCTCCTTCTCTCCAAACT 59.012 55.000 0.00 0.00 0.00 2.66
3195 3299 4.501433 AGATTCATATGGCCTCCTTCTCT 58.499 43.478 3.32 0.00 0.00 3.10
3226 3330 5.939883 TGATAAACATTCTTCAGGTCCACAG 59.060 40.000 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.