Multiple sequence alignment - TraesCS3D01G242900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G242900 chr3D 100.000 3226 0 0 1 3226 338319967 338323192 0.000000e+00 5958.0
1 TraesCS3D01G242900 chr3D 88.525 1037 108 6 1194 2228 338349829 338348802 0.000000e+00 1245.0
2 TraesCS3D01G242900 chr3A 93.896 2310 106 16 1 2284 456450978 456453278 0.000000e+00 3452.0
3 TraesCS3D01G242900 chr3A 88.602 1044 103 9 1189 2228 456700657 456699626 0.000000e+00 1254.0
4 TraesCS3D01G242900 chr3A 86.985 607 39 17 2279 2857 456460686 456461280 0.000000e+00 647.0
5 TraesCS3D01G242900 chr3A 94.920 374 18 1 2853 3226 456492204 456492576 4.640000e-163 584.0
6 TraesCS3D01G242900 chr3B 94.537 1922 79 15 782 2698 436574329 436576229 0.000000e+00 2944.0
7 TraesCS3D01G242900 chr3B 88.900 1027 104 5 1204 2228 436728044 436727026 0.000000e+00 1256.0
8 TraesCS3D01G242900 chr3B 95.266 507 24 0 2720 3226 436578442 436578948 0.000000e+00 804.0
9 TraesCS3D01G242900 chr3B 86.501 563 59 6 1 546 436570668 436571230 1.280000e-168 603.0
10 TraesCS3D01G242900 chr3B 95.122 41 2 0 2410 2450 63390414 63390454 7.470000e-07 65.8
11 TraesCS3D01G242900 chr3B 97.143 35 1 0 2410 2444 580190512 580190546 3.480000e-05 60.2
12 TraesCS3D01G242900 chr2D 86.567 134 17 1 1319 1451 536380670 536380803 2.590000e-31 147.0
13 TraesCS3D01G242900 chr6B 92.857 56 4 0 1651 1706 347591958 347591903 7.420000e-12 82.4
14 TraesCS3D01G242900 chr1D 93.478 46 2 1 2410 2455 234058367 234058323 2.080000e-07 67.6
15 TraesCS3D01G242900 chr5A 94.872 39 2 0 2412 2450 651526608 651526570 9.660000e-06 62.1
16 TraesCS3D01G242900 chr2B 97.143 35 1 0 2416 2450 799024993 799024959 3.480000e-05 60.2
17 TraesCS3D01G242900 chr6A 90.698 43 3 1 2402 2444 418538706 418538665 4.500000e-04 56.5
18 TraesCS3D01G242900 chr7B 92.105 38 3 0 2416 2453 20063937 20063900 2.000000e-03 54.7
19 TraesCS3D01G242900 chr2A 100.000 28 0 0 2388 2415 776909992 776909965 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G242900 chr3D 338319967 338323192 3225 False 5958.000000 5958 100.000000 1 3226 1 chr3D.!!$F1 3225
1 TraesCS3D01G242900 chr3D 338348802 338349829 1027 True 1245.000000 1245 88.525000 1194 2228 1 chr3D.!!$R1 1034
2 TraesCS3D01G242900 chr3A 456450978 456453278 2300 False 3452.000000 3452 93.896000 1 2284 1 chr3A.!!$F1 2283
3 TraesCS3D01G242900 chr3A 456699626 456700657 1031 True 1254.000000 1254 88.602000 1189 2228 1 chr3A.!!$R1 1039
4 TraesCS3D01G242900 chr3A 456460686 456461280 594 False 647.000000 647 86.985000 2279 2857 1 chr3A.!!$F2 578
5 TraesCS3D01G242900 chr3B 436570668 436578948 8280 False 1450.333333 2944 92.101333 1 3226 3 chr3B.!!$F3 3225
6 TraesCS3D01G242900 chr3B 436727026 436728044 1018 True 1256.000000 1256 88.900000 1204 2228 1 chr3B.!!$R1 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 2407 0.106268 TGTCATGGCAACTGTTGGGT 60.106 50.0 21.01 0.0 37.61 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 5527 0.251341 AAACCATGGTGTCTCAGGCC 60.251 55.0 20.6 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.202770 AGCTCCCGTAAGTGCAAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
77 78 6.043327 TCAATAATACGATTTTGACGCTGG 57.957 37.500 0.00 0.00 0.00 4.85
87 88 0.319211 TTGACGCTGGTCGGTTACAG 60.319 55.000 0.00 0.00 46.49 2.74
91 93 1.001633 ACGCTGGTCGGTTACAGAAAT 59.998 47.619 0.00 0.00 43.86 2.17
104 106 5.513267 GGTTACAGAAATAGGGATGGCCTAG 60.513 48.000 3.32 0.00 0.00 3.02
117 119 1.244019 GGCCTAGTTGCAACCACTGG 61.244 60.000 25.62 20.96 0.00 4.00
185 187 6.042777 TCAAATGTCGCTACTTGATTAGAGG 58.957 40.000 0.00 0.00 0.00 3.69
254 256 1.799181 CGATTGAGCCATCGTCGACTT 60.799 52.381 14.70 0.00 38.00 3.01
279 281 4.081642 GTGAAGACTTGGTGGAGCACTATA 60.082 45.833 0.00 0.00 34.40 1.31
302 304 1.153647 CTAGGATGACGCAACCGCA 60.154 57.895 1.66 0.00 38.40 5.69
348 350 1.541379 TCGTCTCGTGGGAAATCTGA 58.459 50.000 0.00 0.00 0.00 3.27
405 423 2.691011 GGTGCCTGTTGGTGTTTAGAAA 59.309 45.455 0.00 0.00 35.27 2.52
455 473 6.302313 GTGCTAAACATTTGTGTAACGTGATC 59.698 38.462 0.00 0.00 42.39 2.92
474 492 5.760253 GTGATCCCACGAGAATGATGTATTT 59.240 40.000 0.00 0.00 33.10 1.40
480 498 7.773224 TCCCACGAGAATGATGTATTTTATGTT 59.227 33.333 0.00 0.00 0.00 2.71
488 506 9.585099 GAATGATGTATTTTATGTTGCCTTTGA 57.415 29.630 0.00 0.00 0.00 2.69
503 521 3.321968 GCCTTTGACCTTTTGGAATCTGT 59.678 43.478 0.00 0.00 44.07 3.41
532 584 9.449719 TGAACCTCTAAAACTCCTTATTCAATC 57.550 33.333 0.00 0.00 0.00 2.67
611 669 5.600898 TCCACTTCATCCTGGTATCGATAAA 59.399 40.000 6.72 0.00 0.00 1.40
614 672 8.094548 CCACTTCATCCTGGTATCGATAAATTA 58.905 37.037 6.72 0.00 0.00 1.40
640 699 5.115480 GTTTTTGGGAGTGCAGATGAAAAA 58.885 37.500 0.00 0.00 0.00 1.94
641 700 4.320608 TTTGGGAGTGCAGATGAAAAAC 57.679 40.909 0.00 0.00 0.00 2.43
644 703 3.703556 TGGGAGTGCAGATGAAAAACAAA 59.296 39.130 0.00 0.00 0.00 2.83
646 705 4.051237 GGAGTGCAGATGAAAAACAAACC 58.949 43.478 0.00 0.00 0.00 3.27
647 706 4.441356 GGAGTGCAGATGAAAAACAAACCA 60.441 41.667 0.00 0.00 0.00 3.67
648 707 5.083533 AGTGCAGATGAAAAACAAACCAA 57.916 34.783 0.00 0.00 0.00 3.67
649 708 5.673514 AGTGCAGATGAAAAACAAACCAAT 58.326 33.333 0.00 0.00 0.00 3.16
652 711 7.768120 AGTGCAGATGAAAAACAAACCAATTTA 59.232 29.630 0.00 0.00 0.00 1.40
691 756 3.330701 AGTTTGATGGCCAAAGTAGAGGA 59.669 43.478 10.96 0.00 44.30 3.71
699 764 4.142038 GGCCAAAGTAGAGGACTGAAAAA 58.858 43.478 0.00 0.00 38.87 1.94
761 2407 0.106268 TGTCATGGCAACTGTTGGGT 60.106 50.000 21.01 0.00 37.61 4.51
838 3726 2.224523 TGAGAAAGAATCAGGTGCCGTT 60.225 45.455 0.00 0.00 0.00 4.44
1032 3923 1.299976 GCCAGACCAGAAATCCGGT 59.700 57.895 0.00 0.00 38.56 5.28
1125 4016 3.798548 GCTGGAAAGATCTCCTTAGCTCG 60.799 52.174 0.00 0.00 36.35 5.03
1143 4034 3.206964 CTCGAGCTGGTCAGTATACTCA 58.793 50.000 1.26 0.00 0.00 3.41
1147 4038 3.742433 GCTGGTCAGTATACTCAGCAT 57.258 47.619 27.62 0.00 46.92 3.79
1162 4053 5.793817 ACTCAGCATATTTACACTCACACA 58.206 37.500 0.00 0.00 0.00 3.72
1163 4054 5.639506 ACTCAGCATATTTACACTCACACAC 59.360 40.000 0.00 0.00 0.00 3.82
1164 4055 4.625311 TCAGCATATTTACACTCACACACG 59.375 41.667 0.00 0.00 0.00 4.49
1165 4056 3.370978 AGCATATTTACACTCACACACGC 59.629 43.478 0.00 0.00 0.00 5.34
1170 4061 0.104120 TACACTCACACACGCTTGCT 59.896 50.000 0.00 0.00 0.00 3.91
1202 4093 5.880887 CCTCTGGGAATTACTGGAAGTTTAC 59.119 44.000 0.00 0.00 41.37 2.01
1211 4103 1.398390 CTGGAAGTTTACTGCGATGGC 59.602 52.381 0.00 0.00 40.52 4.40
1354 4246 1.962306 GGCGCCCGTTCAAGTACAA 60.962 57.895 18.11 0.00 0.00 2.41
1376 4268 4.148825 GCCCAGGTGCTCGTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
1985 4877 3.181967 CACTACAGCGACGCAGCC 61.182 66.667 23.70 0.00 38.01 4.85
2261 5153 1.540267 TACCCGGGAGCAACAAAATG 58.460 50.000 32.02 0.00 0.00 2.32
2298 5190 3.586100 AAAATGCAAATGTCCGGGTAC 57.414 42.857 0.00 0.00 0.00 3.34
2379 5271 6.642707 AAATTACTCCCATGTCAAAAACGA 57.357 33.333 0.00 0.00 0.00 3.85
2506 5400 2.290071 CGGTACACCCTTTGAGGTCAAT 60.290 50.000 0.00 0.00 38.39 2.57
2517 5411 1.123928 GAGGTCAATCTGGGATCGGT 58.876 55.000 0.00 0.00 0.00 4.69
2541 5435 2.011947 GGTTGATACGGGTTTAGTGGC 58.988 52.381 0.00 0.00 0.00 5.01
2592 5486 5.438761 AGGCTTAATCGGTTTAATGATGC 57.561 39.130 0.00 0.00 0.00 3.91
2593 5487 5.133221 AGGCTTAATCGGTTTAATGATGCT 58.867 37.500 0.00 0.00 0.00 3.79
2630 5524 0.312729 GCGGGTTGACCATTTTTCGT 59.687 50.000 2.12 0.00 40.22 3.85
2631 5525 1.269361 GCGGGTTGACCATTTTTCGTT 60.269 47.619 2.12 0.00 40.22 3.85
2632 5526 2.657184 CGGGTTGACCATTTTTCGTTC 58.343 47.619 2.12 0.00 40.22 3.95
2633 5527 2.657184 GGGTTGACCATTTTTCGTTCG 58.343 47.619 2.12 0.00 39.85 3.95
2643 5538 0.105224 TTTTCGTTCGGCCTGAGACA 59.895 50.000 0.00 0.00 0.00 3.41
2646 5541 2.741092 GTTCGGCCTGAGACACCA 59.259 61.111 0.00 0.00 0.00 4.17
2673 5568 6.374565 TTTCAACCTGCAAAATTGAAATGG 57.625 33.333 20.31 4.51 43.74 3.16
2741 7828 4.260132 GCATCAGCATGTAGACTTCTTTCG 60.260 45.833 0.00 0.00 41.58 3.46
2781 7868 5.109903 AGTGTAGCATTATTGACCGAAGAC 58.890 41.667 0.00 0.00 0.00 3.01
2831 7918 0.684805 TTCTCCTTCTCTCGAGGCCC 60.685 60.000 13.56 0.00 34.17 5.80
2846 7933 1.300233 GCCCGAGCATAACTCTCCG 60.300 63.158 0.00 0.00 43.85 4.63
2891 7978 1.227674 CTAGGGTTCCATGCTCGCC 60.228 63.158 0.00 0.00 0.00 5.54
2892 7979 2.978452 CTAGGGTTCCATGCTCGCCG 62.978 65.000 0.00 0.00 0.00 6.46
2934 8021 2.028385 ACGGGTGATTCAACTAGTCCAC 60.028 50.000 0.99 0.19 0.00 4.02
3083 8170 6.875076 ACGAGTAGCCTATTAACACATTTCT 58.125 36.000 0.00 0.00 0.00 2.52
3141 8228 7.827729 GGAATAGGTTTCTTGCTACCTAAGAAA 59.172 37.037 8.38 8.38 46.89 2.52
3146 8233 6.963049 TTTCTTGCTACCTAAGAAACGATC 57.037 37.500 8.38 0.00 44.66 3.69
3155 8242 7.329717 GCTACCTAAGAAACGATCAGATATTGG 59.670 40.741 0.00 0.00 0.00 3.16
3178 8265 2.454336 TGCCTTCGATCCTAGGAGAA 57.546 50.000 18.34 14.56 33.13 2.87
3212 8299 6.899089 TCATGACCAAGTATTGTATCCATGT 58.101 36.000 0.00 0.00 46.99 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.396811 AACTTGCACTTACGGGAGCT 59.603 50.000 0.00 0.00 0.00 4.09
37 38 6.647334 TTATTGATGACAAGCCAAGTGAAA 57.353 33.333 0.00 0.00 39.46 2.69
77 78 4.377897 CCATCCCTATTTCTGTAACCGAC 58.622 47.826 0.00 0.00 0.00 4.79
87 88 3.149981 GCAACTAGGCCATCCCTATTTC 58.850 50.000 5.01 0.00 45.11 2.17
91 93 1.211949 GTTGCAACTAGGCCATCCCTA 59.788 52.381 22.36 0.00 44.08 3.53
104 106 3.615709 GGGGCCAGTGGTTGCAAC 61.616 66.667 21.59 21.59 0.00 4.17
117 119 0.601046 GAACTTGCTTGCAAAGGGGC 60.601 55.000 9.39 0.32 46.35 5.80
185 187 0.179129 CGCTTTGATCATGCCCCAAC 60.179 55.000 13.37 0.00 0.00 3.77
254 256 0.108585 GCTCCACCAAGTCTTCACCA 59.891 55.000 0.00 0.00 0.00 4.17
302 304 0.984995 AAGAGAGGTTAGCGGCCTTT 59.015 50.000 0.00 0.00 36.29 3.11
348 350 6.409810 GGAATACCCTAGCATTCCTCTCTTTT 60.410 42.308 16.17 0.00 44.56 2.27
405 423 0.968393 AGGCACCACAACACCGTTTT 60.968 50.000 0.00 0.00 0.00 2.43
408 426 2.118404 CAAGGCACCACAACACCGT 61.118 57.895 0.00 0.00 0.00 4.83
412 430 3.215568 CGGCAAGGCACCACAACA 61.216 61.111 0.00 0.00 0.00 3.33
455 473 7.496529 ACATAAAATACATCATTCTCGTGGG 57.503 36.000 0.00 0.00 0.00 4.61
464 482 7.981225 GGTCAAAGGCAACATAAAATACATCAT 59.019 33.333 0.00 0.00 41.41 2.45
474 492 4.651503 TCCAAAAGGTCAAAGGCAACATAA 59.348 37.500 0.00 0.00 41.41 1.90
480 498 3.321682 CAGATTCCAAAAGGTCAAAGGCA 59.678 43.478 0.00 0.00 0.00 4.75
488 506 4.584743 GGTTCAGAACAGATTCCAAAAGGT 59.415 41.667 15.36 0.00 35.18 3.50
496 514 7.118535 GGAGTTTTAGAGGTTCAGAACAGATTC 59.881 40.741 15.36 6.88 34.78 2.52
503 521 8.656806 TGAATAAGGAGTTTTAGAGGTTCAGAA 58.343 33.333 0.00 0.00 0.00 3.02
557 609 6.492254 AGTAGTCGCCACTTTGTTTTTAAAG 58.508 36.000 0.00 0.00 42.09 1.85
559 611 6.259638 CAAGTAGTCGCCACTTTGTTTTTAA 58.740 36.000 0.00 0.00 33.99 1.52
560 612 5.220892 CCAAGTAGTCGCCACTTTGTTTTTA 60.221 40.000 0.00 0.00 33.99 1.52
566 624 0.517316 GCCAAGTAGTCGCCACTTTG 59.483 55.000 0.00 0.00 33.99 2.77
569 627 0.037232 GAAGCCAAGTAGTCGCCACT 60.037 55.000 0.00 0.00 36.55 4.00
611 669 3.886505 TCTGCACTCCCAAAAACGTTAAT 59.113 39.130 0.00 0.00 0.00 1.40
614 672 1.757682 TCTGCACTCCCAAAAACGTT 58.242 45.000 0.00 0.00 0.00 3.99
699 764 5.488262 CAAACTGAATTTGGGGGATCTTT 57.512 39.130 0.00 0.00 43.52 2.52
761 2407 0.522705 GAGACGAGCGCACACGATTA 60.523 55.000 23.27 0.00 43.93 1.75
838 3726 1.118965 TCGTCTCCAGTCAGGGCAAA 61.119 55.000 0.00 0.00 38.24 3.68
876 3764 1.060122 GTGCGACGGGACTTTTTATCG 59.940 52.381 0.00 0.00 0.00 2.92
974 3865 0.179215 CGCGTGAAATCAAGAGCACC 60.179 55.000 0.00 0.00 0.00 5.01
1059 3950 3.521560 GCCATACACATGAAACTCGAGA 58.478 45.455 21.68 0.00 33.67 4.04
1125 4016 3.363341 GCTGAGTATACTGACCAGCTC 57.637 52.381 26.29 7.43 44.75 4.09
1143 4034 3.370978 GCGTGTGTGAGTGTAAATATGCT 59.629 43.478 0.00 0.00 0.00 3.79
1147 4038 3.185594 GCAAGCGTGTGTGAGTGTAAATA 59.814 43.478 0.59 0.00 0.00 1.40
1162 4053 3.044305 GGCGAACTGAGCAAGCGT 61.044 61.111 0.00 0.00 36.08 5.07
1163 4054 2.734673 GAGGCGAACTGAGCAAGCG 61.735 63.158 0.00 0.00 36.08 4.68
1164 4055 1.375268 AGAGGCGAACTGAGCAAGC 60.375 57.895 0.00 0.00 36.08 4.01
1165 4056 1.018226 CCAGAGGCGAACTGAGCAAG 61.018 60.000 10.02 0.00 37.54 4.01
1170 4061 0.984230 AATTCCCAGAGGCGAACTGA 59.016 50.000 10.02 0.00 37.54 3.41
1202 4093 3.023118 CTGCATCAGCCATCGCAG 58.977 61.111 0.00 0.00 45.17 5.18
1211 4103 0.674581 TGGCGTTCTTCCTGCATCAG 60.675 55.000 0.00 0.00 0.00 2.90
1431 4323 1.203052 GAACGGGATGTAGTCGGACAA 59.797 52.381 11.27 0.00 31.83 3.18
1536 4428 2.154074 AGGCCAGGAAACGGAGGTT 61.154 57.895 5.01 0.00 38.22 3.50
1544 4436 3.170362 CTGTCCCAGGCCAGGAAA 58.830 61.111 17.38 10.27 34.43 3.13
1866 4758 1.525995 CACTTTCACTGTGGCCGGT 60.526 57.895 8.11 0.00 0.00 5.28
2261 5153 5.580297 TGCATTTTTAAATGGAATCGGAAGC 59.420 36.000 14.97 0.00 42.56 3.86
2298 5190 6.148948 TCATTAAAAATTCTCCACGCACAAG 58.851 36.000 0.00 0.00 0.00 3.16
2332 5224 7.428282 TTGCATTCGTTCTATCACAAAACTA 57.572 32.000 0.00 0.00 0.00 2.24
2506 5400 1.537889 AACCCACACCGATCCCAGA 60.538 57.895 0.00 0.00 0.00 3.86
2517 5411 2.638855 ACTAAACCCGTATCAACCCACA 59.361 45.455 0.00 0.00 0.00 4.17
2541 5435 6.465781 CACTGACATCGAAAATAAAATCCACG 59.534 38.462 0.00 0.00 0.00 4.94
2592 5486 0.321298 CCCCAGACCACACCGTTTAG 60.321 60.000 0.00 0.00 0.00 1.85
2593 5487 1.756024 CCCCAGACCACACCGTTTA 59.244 57.895 0.00 0.00 0.00 2.01
2623 5517 1.223187 GTCTCAGGCCGAACGAAAAA 58.777 50.000 0.00 0.00 0.00 1.94
2630 5524 1.296392 CATGGTGTCTCAGGCCGAA 59.704 57.895 0.00 0.00 0.00 4.30
2631 5525 2.659063 CCATGGTGTCTCAGGCCGA 61.659 63.158 2.57 0.00 0.00 5.54
2632 5526 2.124983 CCATGGTGTCTCAGGCCG 60.125 66.667 2.57 0.00 0.00 6.13
2633 5527 0.251341 AAACCATGGTGTCTCAGGCC 60.251 55.000 20.60 0.00 0.00 5.19
2673 5568 3.871594 AGTGTAGCATTATTGTCTTCGGC 59.128 43.478 0.00 0.00 0.00 5.54
2739 7826 5.165676 ACACTTACGCAATGAATTCTACGA 58.834 37.500 7.05 0.00 0.00 3.43
2741 7828 6.035650 TGCTACACTTACGCAATGAATTCTAC 59.964 38.462 7.05 0.00 0.00 2.59
2834 7921 0.107654 ACAAGGGCGGAGAGTTATGC 60.108 55.000 0.00 0.00 0.00 3.14
2891 7978 2.468831 CTAGAGCTCTTAGCCAAAGCG 58.531 52.381 23.84 0.00 43.77 4.68
2892 7979 2.209273 GCTAGAGCTCTTAGCCAAAGC 58.791 52.381 23.84 18.52 43.77 3.51
2934 8021 5.181748 CACTTTTGATCTCCTACCAGAAGG 58.818 45.833 0.00 0.00 42.21 3.46
2999 8086 2.175878 ACTTGCAGTCAGCCTTACAG 57.824 50.000 0.00 0.00 44.83 2.74
3001 8088 2.347731 GGTACTTGCAGTCAGCCTTAC 58.652 52.381 0.00 0.00 44.83 2.34
3060 8147 6.978659 TCAGAAATGTGTTAATAGGCTACTCG 59.021 38.462 0.00 0.00 0.00 4.18
3155 8242 1.139058 TCCTAGGATCGAAGGCAAAGC 59.861 52.381 7.62 0.00 32.55 3.51
3178 8265 2.894126 ACTTGGTCATGAGTCTTCGACT 59.106 45.455 0.00 0.00 46.42 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.